Pregenerated sensors for TMEM41A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022856Ensembl transcript IDs: ENSMUST00000023562.9, ENSMUST00000232635.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GACCAGCAGCACAGTCCGGGCCCTGTAAACACAGAACCCACATCATaGGTCCTTCCTGCGGTCTGGGTGGCCGATGTCGCTTGTTTCACT | + |
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Preference number: 1 (lower is better) Translates to: DQQHSPGPVNTEPTS*VLPAVWVADVACFT Trigger: AGTGAAACAAGCGACATCGGCCACCCAGACCGCAGGAAGGACGCATGATGTGGGTTCTGTGTTTACAGGGCCCGGACTGTGCTGCTGGTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232635.2 |
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| 3UTR TCA 90 bp | CCACCTTCTTCTGCAGCAGGGCCACTTTATCAGGAAAGTAGGAGATaGCCAGCTGTTTGCCGAAAAGACTGGAAAGCAGGTAGCAGCCTG | + |
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Preference number: 1 (lower is better) Translates to: PPSSAAGPLYQESRR*PAVCRKDWKAGSSL Trigger: CAGGCTGCTACCTGCTTTCCAGTCTTTTCGGCAAACAGCTGGTCATCTCCTACTTTCCTGATAAAGTGGCCCTGCTGCAGAAGAAGGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232635.2 |
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| 3UTR-3UTR GCA 90 bp | ATGCTGCGTGTAAGACCTACGCAGCCCGTCATGTTTCCCTTGGCTTATGGAGAGATCATGCGTCCTTCCTaGGGTCTGGGTGGCCGATGT | + |
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Preference number: 2 (lower is better) Translates to: MLRVRPTQPVMFPLAYGEIMRPS*GLGGRC Trigger: ACATCGGCCACCCAGACCGCAGGAAGGACGCATGAT...CTCTCCATAAGCCAAGGGAAACATGACGGGCTGCGTAGGTCTTACACGCAGCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232635.2 |
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| 3UTR-3UTR TCA 90 bp | CCAAAAAGGCCACCAGCATCATCTTCCAAGACATCTCAGGGTCCAGCAAGAGGCTCATGGGGAAGAGTCTaGGGAACAGCAGGAAAAAGA | + |
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Preference number: 2 (lower is better) Translates to: PKRPPASSSKTSQGPARGSWGRV*GTAGKR Trigger: TCTTTTTCCTGCTGTTCCTCAGACTCTTCCCCATGA...GCCTCTTGCTGGACCCTGAGATGTCTTGGAAGATGATGCTGGTGGCCTTTTTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000232635.2 |
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| 3UTR-3UTR GCA 90 bp | GATCAGCAGCAGAAAGGTAGAGAGGACACTCTTCAACAGAGTCACAGAGGACACTCCTCCACCTTCTTCTaGAGCAGGGCCACTTTATCA | + |
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Preference number: 2 (lower is better) Translates to: DQQQKGREDTLQQSHRGHSSTFF*SRATLS Trigger: TGATAAAGTGGCCCTGCTGCAGAAGAAGGTGGAGGA...GTGTCCTCTGTGACTCTGTTGAAGAGTGTCCTCTCTACCTTTCTGCTGCTGATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232635.2 |
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| 3UTR-3UTR CCA 90 bp | CAAAAAGGCCACCAGCATCATCTTCCAAGACATCTCAGGGTCCAGCAAGAGGCAGTTTCCCTTGGCTTATaGAGAGGTAGATCAGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: QKGHQHHLPRHLRVQQEAVSLGL*RGRSAA Trigger: TGCTGCTGATCTACCTCTCCATAAGCCAAGGGAAAC...TGCCTCTTGCTGGACCCTGAGATGTCTTGGAAGATGATGCTGGTGGCCTTTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023562.9 ENSMUST00000232635.2 |
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| 3UTR-3UTR CCA 90 bp | AGACCTACGCAGCCCGTCATGTTTCCCTTGGCTTATGGAGAGGTAGATCAGCAGAGAAAAACTGCACAATaGGGATGTTCAGAATCGGGG | + |
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Preference number: 2 (lower is better) Translates to: RPTQPVMFPLAYGEVDQQRKTAQ*GCSESG Trigger: CCCCGATTCTGAACATCCCCATTGTGCAGTTTTTCT...CTGCTGATCTACCTCTCCATAAGCCAAGGGAAACATGACGGGCTGCGTAGGTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232635.2 |
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| 3UTR-3UTR CCA 90 bp | AGCAGAAAGGTAGAGAGGACACTCTTCAACAGAGTCACAGAGGACACACAGCTTGTTTGCCGAAAAGACTaGAAAGCAGGTAGCAGCCTG | + |
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Preference number: 2 (lower is better) Translates to: SRKVERTLFNRVTEDTQLVCRKD*KAGSSL Trigger: CAGGCTGCTACCTGCTTTCCAGTCTTTTCGGCAAAC...AAGCTGTGTGTCCTCTGTGACTCTGTTGAAGAGTGTCCTCTCTACCTTTCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232635.2 |
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| 3UTR-3UTR CCA 90 bp | CATCATCTTCCAAGACATCTCAGGGTCCAGCAAGAGGCAAGCCCGACAGATAACCAAGGAGCTTCAACATaGATAGAAGTATCTGTGAAC | + |
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Preference number: 2 (lower is better) Translates to: HHLPRHLRVQQEASPTDNQGAST*IEVSVN Trigger: GTTCACAGATACTTCTATCCATGTTGAAGCTCCTTG...GTTATCTGTCGGGCTTGCCTCTTGCTGGACCCTGAGATGTCTTGGAAGATGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023562.9 ENSMUST00000232635.2 |
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| 3UTR-3UTR TCA 90 bp | AAAGGTAGAGAGGACACTCTTCAACAGAGTCACAGAGGACACACAGCTTGTCCACAAACCGATGAGCACTaGGAAGAAAAACTGCACAAT | + |
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Preference number: 2 (lower is better) Translates to: KGREDTLQQSHRGHTACPQTDEH*EEKLHN Trigger: ATTGTGCAGTTTTTCTTCTCAGTGCTCATCGGTTTG...TGGACAAGCTGTGTGTCCTCTGTGACTCTGTTGAAGAGTGTCCTCTCTACCTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232635.2 |
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| 3UTR CCA 72 bp | CAGAACCCACATCATGCGTCCTTCCTGCGGTCTGGGTaGCCGATGTCGCTTGTTTCACTCAGCGCCAGGCGC | + |
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Preference number: 3 (lower is better) Translates to: QNPHHASFLRSG*PMSLVSLSARR Trigger: GCGCCTGGCGCTGAGTGAAACAAGCGACATCGGCCACCCAGACCGCAGGAAGGACGCATGATGTGGGTTCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232635.2 |
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| 3UTR GCA 72 bp | CACAGTCCGGGCCCTGTAAACACAGAACCCACATCATaGGTCCTTCCTGCGGTCTGGGTGGCCGATGTCGCT | + |
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Preference number: 3 (lower is better) Translates to: HSPGPVNTEPTS*VLPAVWVADVA Trigger: AGCGACATCGGCCACCCAGACCGCAGGAAGGACGCATGATGTGGGTTCTGTGTTTACAGGGCCCGGACTGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232635.2 |
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| 3UTR CCA 72 bp | AACACAGAACCCACATCATGCGTCCTTCCTGCGGTCTaGGTGGCCGATGTCGCTTGTTTCACTCAGCGCCAG | + |
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Preference number: 3 (lower is better) Translates to: NTEPTSCVLPAV*VADVACFTQRQ Trigger: CTGGCGCTGAGTGAAACAAGCGACATCGGCCACCCAGACCGCAGGAAGGACGCATGATGTGGGTTCTGTGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232635.2 |
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| 3UTR GCA 72 bp | CCCTGTAAACACAGAACCCACATCATGCGTCCTTCCTaGGGTCTGGGTGGCCGATGTCGCTTGTTTCACTCA | + |
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Preference number: 3 (lower is better) Translates to: PCKHRTHIMRPS*GLGGRCRLFHS Trigger: TGAGTGAAACAAGCGACATCGGCCACCCAGACCGCAGGAAGGACGCATGATGTGGGTTCTGTGTTTACAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232635.2 |
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| 3UTR CCA 72 bp | GTTCAGAATCGGGGCCGAGAGGTTCAAGAACCAGTTTaGTGTCATGGGGAAGAGTCTGAGGAACAGCAGGAA | + |
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Preference number: 3 (lower is better) Translates to: VQNRGREVQEPV*CHGEESEEQQE Trigger: TTCCTGCTGTTCCTCAGACTCTTCCCCATGACACCAAACTGGTTCTTGAACCTCTCGGCCCCGATTCTGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232635.2 |
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| 3UTR-3UTR CAA 90 bp | CCAAAAAGGCCACCAGCATCATCTTCCAAGACATCTCAGGGTCCAGCAAGAGGCGAGATGACCAGCTGTTaGCCGAAAAGACTGGAAAGC | + |
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Preference number: 3 (lower is better) Translates to: PKRPPASSSKTSQGPARGEMTSC*PKRLES Trigger: GCTTTCCAGTCTTTTCGGCAAACAGCTGGTCATCTC...GCCTCTTGCTGGACCCTGAGATGTCTTGGAAGATGATGCTGGTGGCCTTTTTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000232635.2 |
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| 3UTR-3UTR CAA 90 bp | CGTGTAAGACCTACGCAGCCCGTCATGTTTCCCTTGGCTTATGGAGAGGTAGATGGTTCAAGAACCAGTTaGGTGTCATGGGGAAGAGTC | + |
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Preference number: 3 (lower is better) Translates to: RVRPTQPVMFPLAYGEVDGSRTS*VSWGRV Trigger: GACTCTTCCCCATGACACCAAACTGGTTCTTGAACC...ATCTACCTCTCCATAAGCCAAGGGAAACATGACGGGCTGCGTAGGTCTTACACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232635.2 |
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| 3UTR TCA 72 bp | GCAGATGAAATTGTAAGGGATCAAACCGATGAGCACTaGGAAGAAAAACTGCACAATGGGGATGTTCAGAAT | + |
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Preference number: 3 (lower is better) Translates to: ADEIVRDQTDEH*EEKLHNGDVQN Trigger: ATTCTGAACATCCCCATTGTGCAGTTTTTCTTCTCAGTGCTCATCGGTTTGATCCCTTACAATTTCATCTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000232635.2 |
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| CDS-3UTR CCA 90 bp | CCAGCATCATCTTCCAAGACATCTCAGGGTCCAGCAAGAGGCAAGCCCGACAGACAAAAGTCCCAGCCATaGCCCGAACAAGGCACCAGC | + |
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Preference number: 4 (lower is better) Translates to: PASSSKTSQGPARGKPDRQKSQP*PEQGTS Trigger: GCTGGTGCCTTGTTCGGGCCATGGCTGGGACTTTTG...TCTGTCGGGCTTGCCTCTTGCTGGACCCTGAGATGTCTTGGAAGATGATGCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023562.9 ENSMUST00000232635.2 |
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| CDS-3UTR CCA 90 bp | ACCAGCATCATCTTCCAAGACATCTCAGGGTCCAGCAAGAGGCAAGCCCGACAGAGCTGGAGCCAGGGATaGCAAAGCCCTGCTTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: TSIIFQDISGSSKRQARQSWSQG*QSPACR Trigger: TCTACAAGCAGGGCTTTGCCATCCCTGGCTCCAGCT...CTGTCGGGCTTGCCTCTTGCTGGACCCTGAGATGTCTTGGAAGATGATGCTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS-3UTR GCA 90 bp | AGCAGAAAGGTAGAGAGGACACTCTTCAACAGAGTCACAGAGGACACACAGCTTGAGCTCCCGCAGCTCTaGCAGATCGGAGGGGAACCA | + |
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Preference number: 4 (lower is better) Translates to: SRKVERTLFNRVTEDTQLELPQL*QIGGEP Trigger: TGGTTCCCCTCCGATCTGGCAGAGCTGCGGGAGCTC...AAGCTGTGTGTCCTCTGTGACTCTGTTGAAGAGTGTCCTCTCTACCTTTCTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS-3UTR CCA 90 bp | AGCATCATCTTCCAAGACATCTCAGGGTCCAGCAAGAGGCAAGCCCGACAGATACCAAGGGCAGCCGCGTaGAGAGCAGGTATAATGCGA | + |
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Preference number: 4 (lower is better) Translates to: SIIFQDISGSSKRQARQIPRAAA*RAGIMR Trigger: TCGCATTATACCTGCTCTCCACGCGGCTGCCCTTGG...TATCTGTCGGGCTTGCCTCTTGCTGGACCCTGAGATGTCTTGGAAGATGATGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023562.9 ENSMUST00000232635.2 |
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| CDS-3UTR CCA 90 bp | AAGACCTACGCAGCCCGTCATGTTTCCCTTGGCTTATGGAGAGGTAGATCAGCAGCAGGTAGCAGCCTGTaGCACCCACGGATGTCAACA | + |
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Preference number: 4 (lower is better) Translates to: KTYAARHVSLGLWRGRSAAGSSL*HPRMST Trigger: TGTTGACATCCGTGGGTGCCACAGGCTGCTACCTGC...TGCTGATCTACCTCTCCATAAGCCAAGGGAAACATGACGGGCTGCGTAGGTCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS-3UTR CCA 90 bp | GAGGACACTCTTCAACAGAGTCACAGAGGACACACAGCTTGTCCAAAAAGGCCACCAAGGGCAGCCGCGTaGAGAGCAGGTATAATGCGA | + |
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Preference number: 4 (lower is better) Translates to: EDTLQQSHRGHTACPKRPPRAAA*RAGIMR Trigger: TCGCATTATACCTGCTCTCCACGCGGCTGCCCTTGG...TGGCCTTTTTGGACAAGCTGTGTGTCCTCTGTGACTCTGTTGAAGAGTGTCCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023562.9 ENSMUST00000232635.2 |
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| CDS-3UTR CCA 90 bp | CCAGCATCATCTTCCAAGACATCTCAGGGTCCAGCAAGAGGCAAGCCCGACAGAAAACATTCAGGAAGCTaGAGCCAGGGATGGCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: PASSSKTSQGPARGKPDRKHSGS*SQGWQS Trigger: GCTTTGCCATCCCTGGCTCCAGCTTCCTGAATGTTT...TCTGTCGGGCTTGCCTCTTGCTGGACCCTGAGATGTCTTGGAAGATGATGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| 3UTR CAA 72 bp | CTGCGTGTAAGACCTACGCAGCCCGTCATGTTTCCCTaGGCTTATGGAGAGGTAGATCAGCAGCAGAAAGGT | + |
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Preference number: 4 (lower is better) Translates to: LRVRPTQPVMFP*AYGEVDQQQKG Trigger: ACCTTTCTGCTGCTGATCTACCTCTCCATAAGCCAAGGGAAACATGACGGGCTGCGTAGGTCTTACACGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023562.9 ENSMUST00000232635.2 |
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| CDS-3UTR GCA 90 bp | ACACTCTTCAACAGAGTCACAGAGGACACACAGCTTGTCCAAAAAGGCCACCAGTCCTCCACCTTCTTCTaGAGCAGGGCCACTTTATCA | + |
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Preference number: 4 (lower is better) Translates to: TLFNRVTEDTQLVQKGHQSSTFF*SRATLS Trigger: TGATAAAGTGGCCCTGCTGCAGAAGAAGGTGGAGGA...CTGGTGGCCTTTTTGGACAAGCTGTGTGTCCTCTGTGACTCTGTTGAAGAGTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS-3UTR CCA 90 bp | TTGTCCAAAAAGGCCACCAGCATCATCTTCCAAGACATCTCAGGGTCCAGCAAGGTTTGCCGAAAAGACTaGAAAGCAGGTAGCAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: LSKKATSIIFQDISGSSKVCRKD*KAGSSL Trigger: CAGGCTGCTACCTGCTTTCCAGTCTTTTCGGCAAAC...CTTGCTGGACCCTGAGATGTCTTGGAAGATGATGCTGGTGGCCTTTTTGGACAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS-3UTR CCA 90 bp | CAGCATCATCTTCCAAGACATCTCAGGGTCCAGCAAGAGGCAAGCCCGACAGATAGAAAAACTGCACAATaGGGATGTTCAGAATCGGGG | + |
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Preference number: 4 (lower is better) Translates to: QHHLPRHLRVQQEASPTDRKTAQ*GCSESG Trigger: CCCCGATTCTGAACATCCCCATTGTGCAGTTTTTCT...ATCTGTCGGGCTTGCCTCTTGCTGGACCCTGAGATGTCTTGGAAGATGATGCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| 3UTR CAA 72 bp | GGACACTCTTCAACAGAGTCACAGAGGACACACAGCTaGTCCAAAAAGGCCACCAGCATCATCTTCCAAGAC | + |
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Preference number: 4 (lower is better) Translates to: GHSSTESQRTHS*SKKATSIIFQD Trigger: GTCTTGGAAGATGATGCTGGTGGCCTTTTTGGACAAGCTGTGTGTCCTCTGTGACTCTGTTGAAGAGTGTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023562.9 ENSMUST00000232635.2 |
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| CDS-3UTR TCA 90 bp | GGAGAGGTAGATCAGCAGCAGAAAGGTAGAGAGGACACTCTTCAACAGAGTCACTCATGGGGAAGAGTCTaGGGAACAGCAGGAAAAAGA | + |
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Preference number: 4 (lower is better) Translates to: GEVDQQQKGREDTLQQSHSWGRV*GTAGKR Trigger: TCTTTTTCCTGCTGTTCCTCAGACTCTTCCCCATGA...GTGACTCTGTTGAAGAGTGTCCTCTCTACCTTTCTGCTGCTGATCTACCTCTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS-3UTR TCA 90 bp | GAGGACACTCTTCAACAGAGTCACAGAGGACACACAGCTTGTCCAAAAAGGCCACAAACCGATGAGCACTaGGAAGAAAAACTGCACAAT | + |
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Preference number: 4 (lower is better) Translates to: EDTLQQSHRGHTACPKRPQTDEH*EEKLHN Trigger: ATTGTGCAGTTTTTCTTCTCAGTGCTCATCGGTTTG...TGGCCTTTTTGGACAAGCTGTGTGTCCTCTGTGACTCTGTTGAAGAGTGTCCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS-3UTR GCA 90 bp | AGGACACACAGCTTGTCCAAAAAGGCCACCAGCATCATCTTCCAAGACATCTCATGTAGAGGTAGGCACTaGAAAAGAGCAGGAACACAT | + |
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Preference number: 4 (lower is better) Translates to: RTHSLSKKATSIIFQDISCRGRH*KRAGTH Trigger: ATGTGTTCCTGCTCTTTTGCAGTGCCTACCTCTACA...TGAGATGTCTTGGAAGATGATGCTGGTGGCCTTTTTGGACAAGCTGTGTGTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS-3UTR CCA 90 bp | AGGACACACAGCTTGTCCAAAAAGGCCACCAGCATCATCTTCCAAGACATCTCAGTTCAAGAACCAGTTTaGTGTCATGGGGAAGAGTCT | + |
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Preference number: 4 (lower is better) Translates to: RTHSLSKKATSIIFQDISVQEPV*CHGEES Trigger: AGACTCTTCCCCATGACACCAAACTGGTTCTTGAAC...TGAGATGTCTTGGAAGATGATGCTGGTGGCCTTTTTGGACAAGCTGTGTGTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS GCA 90 bp | CTCTTTCCGGTACTCTCGAAGAACTTCAGAGAGCTCCCGCAGCTCTaGCAGATCGGAGGGGAACCACAGCGACCGGCCTTCGGGCTCCCC | + |
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Preference number: 5 (lower is better) Translates to: LFPVLSKNFRELPQL*QIGGEPQRPAFGLP Trigger: GGGGAGCCCGAAGGCCGGTCGCTGTGGTTCCCCTCCGATCTGGCAGAGCTGCGGGAGCTCTCTGAAGTTCTTCGAGAGTACCGGAAAGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS CCA 90 bp | GGCACCCACGGATGTCAACACGCAGCACAGCAAAAGTCCCAGCCATaGCCCGAACAAGGCACCAGCCAAAACATTCAGGAAGCTGGAGCC | + |
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Preference number: 5 (lower is better) Translates to: GTHGCQHAAQQKSQP*PEQGTSQNIQEAGA Trigger: GGCTCCAGCTTCCTGAATGTTTTGGCTGGTGCCTTGTTCGGGCCATGGCTGGGACTTTTGCTGTGCTGCGTGTTGACATCCGTGGGTGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS-3UTR CAA 90 bp | CAAAAAGGCCACCAGCATCATCTTCCAAGACATCTCAGGGTCCAGCAAGAGGCAGGTGGCCGATGTCGCTaGTTTCACTCAGCGCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: QKGHQHHLPRHLRVQQEAGGRCR*FHSAPG Trigger: GCCTGGCGCTGAGTGAAACAAGCGACATCGGCCACC...TGCCTCTTGCTGGACCCTGAGATGTCTTGGAAGATGATGCTGGTGGCCTTTTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS CCA 90 bp | CGAACAAGGCACCAGCCAAAACATTCAGGAAGCTGGAGCCAGGGATaGCAAAGCCCTGCTTGTAGAGGTAGGCACTGCAAAAGAGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: RTRHQPKHSGSWSQG*QSPACRGRHCKRAG Trigger: TCCTGCTCTTTTGCAGTGCCTACCTCTACAAGCAGGGCTTTGCCATCCCTGGCTCCAGCTTCCTGAATGTTTTGGCTGGTGCCTTGTTCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS-3UTR CAA 90 bp | CACTCTTCAACAGAGTCACAGAGGACACACAGCTTGTCCAAAAAGGCCACCAGCGGTTCAAGAACCAGTTaGGTGTCATGGGGAAGAGTC | + |
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Preference number: 5 (lower is better) Translates to: HSSTESQRTHSLSKKATSGSRTS*VSWGRV Trigger: GACTCTTCCCCATGACACCAAACTGGTTCTTGAACC...GCTGGTGGCCTTTTTGGACAAGCTGTGTGTCCTCTGTGACTCTGTTGAAGAGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS-3UTR CAA 90 bp | AGCAGAAAGGTAGAGAGGACACTCTTCAACAGAGTCACAGAGGACACACAGCTTGAGATGACCAGCTGTTaGCCGAAAAGACTGGAAAGC | + |
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Preference number: 5 (lower is better) Translates to: SRKVERTLFNRVTEDTQLEMTSC*PKRLES Trigger: GCTTTCCAGTCTTTTCGGCAAACAGCTGGTCATCTC...AAGCTGTGTGTCCTCTGTGACTCTGTTGAAGAGTGTCCTCTCTACCTTTCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS GCA 72 bp | CAGGGATGGCAAAGCCCTGCTTGTAGAGGTAGGCACTaGAAAAGAGCAGGAACACATAGGCCTGGTGCTCTT | + |
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Preference number: 6 (lower is better) Translates to: QGWQSPACRGRH*KRAGTHRPGAL Trigger: AAGAGCACCAGGCCTATGTGTTCCTGCTCTTTTGCAGTGCCTACCTCTACAAGCAGGGCTTTGCCATCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS CCA 72 bp | GGATGTCAACACGCAGCACAGCAAAAGTCCCAGCCATaGCCCGAACAAGGCACCAGCCAAAACATTCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: GCQHAAQQKSQP*PEQGTSQNIQE Trigger: TTCCTGAATGTTTTGGCTGGTGCCTTGTTCGGGCCATGGCTGGGACTTTTGCTGTGCTGCGTGTTGACATCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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| CDS CCA 72 bp | GTTTGCCGAAAAGACTGGAAAGCAGGTAGCAGCCTGTaGCACCCACGGATGTCAACACGCAGCACAGCAAAA | + |
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Preference number: 6 (lower is better) Translates to: VCRKDWKAGSSL*HPRMSTRSTAK Trigger: TTTTGCTGTGCTGCGTGTTGACATCCGTGGGTGCCACAGGCTGCTACCTGCTTTCCAGTCTTTTCGGCAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023562.9 |
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