Pregenerated sensors for TMEM40 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059900Ensembl transcript IDs: ENSMUST00000072933.13, ENSMUST00000112946.8, ENSMUST00000166254.7, ENSMUST00000170625.8
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTCCGCAGCTTTGGTCCCCAGCGTCTTACCTGCAACAAGTTCCCCTaGGAACCCAGCCTGGTAGCTCCCTGCCTCAGAATGGCTGTCCCA | + |
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Preference number: 1 (lower is better) Translates to: VRSFGPQRLTCNKFP*EPSLVAPCLRMAVP Trigger: TGGGACAGCCATTCTGAGGCAGGGAGCTACCAGGCTGGGTTCCCAGGGGAACTTGTTGCAGGTAAGACGCTGGGGACCAAAGCTGCGGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR CCA 90 bp | TGTCTTCCAGCGCGTCGTTCTGTCTTCTGGGCTCAGGCATGGCAGTaGTTACAGTGGTCACATTGGGGACTGGCTCAGCTGCTGTCAGGC | + |
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Preference number: 1 (lower is better) Translates to: CLPARRSVFWAQAWQ*LQWSHWGLAQLLSG Trigger: GCCTGACAGCAGCTGAGCCAGTCCCCAATGTGACCACTGTAACCACTGCCATGCCTGAGCCCAGAAGACAGAACGACGCGCTGGAAGACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR CCA 90 bp | GTCCAAGGGCAACAGGGTTGGTCAGCTATGATGGGTCCGCAGCTTTaGTCCCCAGCGTCTTACCTGCAACAAGTTCCCCTGGGAACCCAG | + |
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Preference number: 1 (lower is better) Translates to: VQGQQGWSAMMGPQL*SPASYLQQVPLGTQ Trigger: CTGGGTTCCCAGGGGAACTTGTTGCAGGTAAGACGCTGGGGACCAAAGCTGCGGACCCATCATAGCTGACCAACCCTGTTGCCCTTGGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR GCA 90 bp | CTTACCTGCAACAAGTTCCCCTGGGAACCCAGCCTGGTAGCTCCCTaGCTCAGAATGGCTGTCCCAAGAAGGCTCTGCAGGAACTGTGAG | + |
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Preference number: 1 (lower is better) Translates to: LTCNKFPWEPSLVAP*LRMAVPRRLCRNCE Trigger: CTCACAGTTCCTGCAGAGCCTTCTTGGGACAGCCATTCTGAGGCAGGGAGCTACCAGGCTGGGTTCCCAGGGGAACTTGTTGCAGGTAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR CCA 90 bp | GTGCCGACACTCAGATCACGTGGAAGGAAAGAGCTCTTTATTGTGTaGCCTTCTGGTGTCTTCCAGCGCGTCGTTCTGTCTTCTGGGCTC | + |
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Preference number: 1 (lower is better) Translates to: VPTLRSRGRKELFIV*PSGVFQRVVLSSGL Trigger: GAGCCCAGAAGACAGAACGACGCGCTGGAAGACACCAGAAGGCCACACAATAAAGAGCTCTTTCCTTCCACGTGATCTGAGTGTCGGCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR CCA 90 bp | ACTCAGATCACGTGGAAGGAAAGAGCTCTTTATTGTGTGGCCTTCTaGTGTCTTCCAGCGCGTCGTTCTGTCTTCTGGGCTCAGGCATGG | + |
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Preference number: 1 (lower is better) Translates to: TQITWKERALYCVAF*CLPARRSVFWAQAW Trigger: CCATGCCTGAGCCCAGAAGACAGAACGACGCGCTGGAAGACACCAGAAGGCCACACAATAAAGAGCTCTTTCCTTCCACGTGATCTGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR-3UTR TCA 90 bp | CTTTGGTCCCCAGCGTCTTACCTGCAACAAGTTCCCCTGGGAACCCAGCCTGGTCTCCTGGGCATGGCCTaGGGACACCAGAGAGACCCA | + |
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Preference number: 2 (lower is better) Translates to: LWSPASYLQQVPLGTQPGLLGMA*GHQRDP Trigger: TGGGTCTCTCTGGTGTCCTCAGGCCATGCCCAGGAG...ACCAGGCTGGGTTCCCAGGGGAACTTGTTGCAGGTAAGACGCTGGGGACCAAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR-3UTR CCA 90 bp | CCTGGTAGCTCCCTGCCTCAGAATGGCTGTCCCAAGAAGGCTCTGCAGGAACTGGGTCACATTGGGGACTaGCTCAGCTGCTGTCAGGCA | + |
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Preference number: 2 (lower is better) Translates to: PGSSLPQNGCPKKALQELGHIGD*LSCCQA Trigger: TGCCTGACAGCAGCTGAGCCAGTCCCCAATGTGACC...CAGTTCCTGCAGAGCCTTCTTGGGACAGCCATTCTGAGGCAGGGAGCTACCAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR-3UTR CCA 90 bp | GCAATGGCATCCCAGCTCCTCCGTGCTGACCCGACGCTATCCCCTCTTCTCTTCTGGCAGTGGTTACAGTaGTCACATTGGGGACTGGCT | + |
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Preference number: 2 (lower is better) Translates to: AMASQLLRADPTLSPLLFWQWLQ*SHWGLA Trigger: AGCCAGTCCCCAATGTGACCACTGTAACCACTGCCA...GAAGAGAAGAGGGGATAGCGTCGGGTCAGCACGGAGGAGCTGGGATGCCATTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR-3UTR GCA 90 bp | ACCTGCAACAAGTTCCCCTGGGAACCCAGCCTGGTAGCTCCCTGCCTCAGAATGGACTGCGTGTTAATCTaGAGAGCAAGAGCCTGCCCA | + |
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Preference number: 2 (lower is better) Translates to: TCNKFPWEPSLVAPCLRMDCVLI*RARACP Trigger: TGGGCAGGCTCTTGCTCTGCAGATTAACACGCAGTC...CATTCTGAGGCAGGGAGCTACCAGGCTGGGTTCCCAGGGGAACTTGTTGCAGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR-3UTR CCA 90 bp | AGCCTGGTAGCTCCCTGCCTCAGAATGGCTGTCCCAAGAAGGCTCTGCAGGAACTATTGTGTGGCCTTCTaGTGTCTTCCAGCGCGTCGT | + |
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Preference number: 2 (lower is better) Translates to: SLVAPCLRMAVPRRLCRNYCVAF*CLPARR Trigger: ACGACGCGCTGGAAGACACCAGAAGGCCACACAATA...GTTCCTGCAGAGCCTTCTTGGGACAGCCATTCTGAGGCAGGGAGCTACCAGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR-3UTR TCA 90 bp | AACAAGTTCCCCTGGGAACCCAGCCTGGTAGCTCCCTGCCTCAGAATGGCTGTCATTCATGTTGACCTATaGGCAATGGCATCCCAGCTC | + |
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Preference number: 2 (lower is better) Translates to: NKFPWEPSLVAPCLRMAVIHVDL*AMASQL Trigger: GAGCTGGGATGCCATTGCTCATAGGTCAACATGAAT...GACAGCCATTCTGAGGCAGGGAGCTACCAGGCTGGGTTCCCAGGGGAACTTGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR-3UTR CCA 90 bp | GTGGAAGGAAAGAGCTCTTTATTGTGTGGCCTTCTGGTGTCTTCCAGCGCGTCGTTCTGGGCTCAGGCATaGCAGTGGTTACAGTGGTCA | + |
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Preference number: 2 (lower is better) Translates to: VEGKSSLLCGLLVSSSASFWAQA*QWLQWS Trigger: TGACCACTGTAACCACTGCCATGCCTGAGCCCAGAA...CGACGCGCTGGAAGACACCAGAAGGCCACACAATAAAGAGCTCTTTCCTTCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR-3UTR CCA 90 bp | CCACTGGTGCCGACACTCAGATCACGTGGAAGGAAAGAGCTCTTTATTGTGTGGTTCTGGGCTCAGGCATaGCAGTGGTTACAGTGGTCA | + |
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Preference number: 2 (lower is better) Translates to: PLVPTLRSRGRKELFIVWFWAQA*QWLQWS Trigger: TGACCACTGTAACCACTGCCATGCCTGAGCCCAGAA...CCACACAATAAAGAGCTCTTTCCTTCCACGTGATCTGAGTGTCGGCACCAGTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR-3UTR CCA 90 bp | CAGAAAATTTATTTGGATTTTAGGAGTCCAAGGGCAACAGGGTTGGTCAGCTATGTGAGCTCCTGGGCATaGCCTGAGGACACCAGAGAG | + |
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Preference number: 2 (lower is better) Translates to: QKIYLDFRSPRATGLVSYVSSWA*PEDTRE Trigger: CTCTCTGGTGTCCTCAGGCCATGCCCAGGAGCTCAC...ATAGCTGACCAACCCTGTTGCCCTTGGACTCCTAAAATCCAAATAAATTTTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR-3UTR GCA 90 bp | CAGAAAATTTATTTGGATTTTAGGAGTCCAAGGGCAACAGGGTTGGTCAGCTATGTCCCAAGAAGGCTCTaGAGGAACTGTGAGCTCCTG | + |
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Preference number: 2 (lower is better) Translates to: QKIYLDFRSPRATGLVSYVPRRL*RNCELL Trigger: CAGGAGCTCACAGTTCCTGCAGAGCCTTCTTGGGAC...ATAGCTGACCAACCCTGTTGCCCTTGGACTCCTAAAATCCAAATAAATTTTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR-3UTR GCA 90 bp | AAATTTATTTGGATTTTAGGAGTCCAAGGGCAACAGGGTTGGTCAGCTATGATGCTTCCCCACGGAGACTaGGTGTTAATCTGCAGAGCA | + |
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Preference number: 2 (lower is better) Translates to: KFIWILGVQGQQGWSAMMLPHGD*VLICRA Trigger: TGCTCTGCAGATTAACACGCAGTCTCCGTGGGGAAG...CATCATAGCTGACCAACCCTGTTGCCCTTGGACTCCTAAAATCCAAATAAATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR-3UTR GCA 90 bp | AAAATTTATTTGGATTTTAGGAGTCCAAGGGCAACAGGGTTGGTCAGCTATGATGACTGCGTGTTAATCTaGAGAGCAAGAGCCTGCCCA | + |
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Preference number: 2 (lower is better) Translates to: KIYLDFRSPRATGLVSYDDCVLI*RARACP Trigger: TGGGCAGGCTCTTGCTCTGCAGATTAACACGCAGTC...ATCATAGCTGACCAACCCTGTTGCCCTTGGACTCCTAAAATCCAAATAAATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR-3UTR CCA 90 bp | AAAATTTATTTGGATTTTAGGAGTCCAAGGGCAACAGGGTTGGTCAGCTATGATGCTCAGGCATGGCAGTaGTTACAGTGGTCACATTGG | + |
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Preference number: 2 (lower is better) Translates to: KIYLDFRSPRATGLVSYDAQAWQ*LQWSHW Trigger: CCAATGTGACCACTGTAACCACTGCCATGCCTGAGC...ATCATAGCTGACCAACCCTGTTGCCCTTGGACTCCTAAAATCCAAATAAATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR-3UTR TCA 90 bp | AAATTTATTTGGATTTTAGGAGTCCAAGGGCAACAGGGTTGGTCAGCTATGATGACCCAGGATTCATGTTaGCCTATGAGCAATGGCATC | + |
|
Preference number: 2 (lower is better) Translates to: KFIWILGVQGQQGWSAMMTQDSC*PMSNGI Trigger: GATGCCATTGCTCATAGGTCAACATGAATCCTGGGT...CATCATAGCTGACCAACCCTGTTGCCCTTGGACTCCTAAAATCCAAATAAATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR TCA 72 bp | AGGCTCTGCAGGAACTGTGAGCTCCTGGGCATGGCCTaGGGACACCAGAGAGACCCAGGCCCGCAGATGCCA | + |
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Preference number: 3 (lower is better) Translates to: RLCRNCELLGMA*GHQRDPGPQMP Trigger: TGGCATCTGCGGGCCTGGGTCTCTCTGGTGTCCTCAGGCCATGCCCAGGAGCTCACAGTTCCTGCAGAGCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR GCA 72 bp | CCCTCTTCTCTTCCCCACGGAGACTGCGTGTTAATCTaGAGAGCAAGAGCCTGCCCACTGGTGCCGACACTC | + |
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Preference number: 3 (lower is better) Translates to: PSSLPHGDCVLI*RARACPLVPTL Trigger: GAGTGTCGGCACCAGTGGGCAGGCTCTTGCTCTGCAGATTAACACGCAGTCTCCGTGGGGAAGAGAAGAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR GCA 72 bp | CCCGACGCTATCCCCTCTTCTCTTCCCCACGGAGACTaGGTGTTAATCTGCAGAGCAAGAGCCTGCCCACTG | + |
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Preference number: 3 (lower is better) Translates to: PDAIPSSLPHGD*VLICRARACPL Trigger: CAGTGGGCAGGCTCTTGCTCTGCAGATTAACACGCAGTCTCCGTGGGGAAGAGAAGAGGGGATAGCGTCGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR GCA 72 bp | AACAAGTTCCCCTGGGAACCCAGCCTGGTAGCTCCCTaGCTCAGAATGGCTGTCCCAAGAAGGCTCTGCAGG | + |
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Preference number: 3 (lower is better) Translates to: NKFPWEPSLVAP*LRMAVPRRLCR Trigger: CCTGCAGAGCCTTCTTGGGACAGCCATTCTGAGGCAGGGAGCTACCAGGCTGGGTTCCCAGGGGAACTTGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR CCA 72 bp | GCGCGTCGTTCTGTCTTCTGGGCTCAGGCATGGCAGTaGTTACAGTGGTCACATTGGGGACTGGCTCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: ARRSVFWAQAWQ*LQWSHWGLAQL Trigger: CAGCTGAGCCAGTCCCCAATGTGACCACTGTAACCACTGCCATGCCTGAGCCCAGAAGACAGAACGACGCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 ENSMUST00000170625.8 |
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| 3UTR TCA 72 bp | TGCCAGCCTGCAGAACCCAGGATTCATGTTGACCTATaGGCAATGGCATCCCAGCTCCTCCGTGCTGACCCG | + |
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Preference number: 3 (lower is better) Translates to: CQPAEPRIHVDL*AMASQLLRADP Trigger: CGGGTCAGCACGGAGGAGCTGGGATGCCATTGCTCATAGGTCAACATGAATCCTGGGTTCTGCAGGCTGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR TCA 72 bp | CCGCAGATGCCAGCCTGCAGAACCCAGGATTCATGTTaGCCTATGAGCAATGGCATCCCAGCTCCTCCGTGC | + |
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Preference number: 3 (lower is better) Translates to: PQMPACRTQDSC*PMSNGIPAPPC Trigger: GCACGGAGGAGCTGGGATGCCATTGCTCATAGGTCAACATGAATCCTGGGTTCTGCAGGCTGGCATCTGCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR CCA 72 bp | CTTCCAGCGCGTCGTTCTGTCTTCTGGGCTCAGGCATaGCAGTGGTTACAGTGGTCACATTGGGGACTGGCT | + |
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Preference number: 3 (lower is better) Translates to: LPARRSVFWAQA*QWLQWSHWGLA Trigger: AGCCAGTCCCCAATGTGACCACTGTAACCACTGCCATGCCTGAGCCCAGAAGACAGAACGACGCGCTGGAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 ENSMUST00000170625.8 |
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| 3UTR CCA 72 bp | TTTGGTCCCCAGCGTCTTACCTGCAACAAGTTCCCCTaGGAACCCAGCCTGGTAGCTCCCTGCCTCAGAATG | + |
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Preference number: 3 (lower is better) Translates to: FGPQRLTCNKFP*EPSLVAPCLRM Trigger: CATTCTGAGGCAGGGAGCTACCAGGCTGGGTTCCCAGGGGAACTTGTTGCAGGTAAGACGCTGGGGACCAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR CCA 72 bp | CAACAGGGTTGGTCAGCTATGATGGGTCCGCAGCTTTaGTCCCCAGCGTCTTACCTGCAACAAGTTCCCCTG | + |
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Preference number: 3 (lower is better) Translates to: QQGWSAMMGPQL*SPASYLQQVPL Trigger: CAGGGGAACTTGTTGCAGGTAAGACGCTGGGGACCAAAGCTGCGGACCCATCATAGCTGACCAACCCTGTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR CCA 72 bp | AAGAGCCTGCCCACTGGTGCCGACACTCAGATCACGTaGAAGGAAAGAGCTCTTTATTGTGTGGCCTTCTGG | + |
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Preference number: 3 (lower is better) Translates to: KSLPTGADTQIT*KERALYCVAFW Trigger: CCAGAAGGCCACACAATAAAGAGCTCTTTCCTTCCACGTGATCTGAGTGTCGGCACCAGTGGGCAGGCTCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR CCA 72 bp | ACGTGGAAGGAAAGAGCTCTTTATTGTGTGGCCTTCTaGTGTCTTCCAGCGCGTCGTTCTGTCTTCTGGGCT | + |
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Preference number: 3 (lower is better) Translates to: TWKERALYCVAF*CLPARRSVFWA Trigger: AGCCCAGAAGACAGAACGACGCGCTGGAAGACACCAGAAGGCCACACAATAAAGAGCTCTTTCCTTCCACGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR CCA 72 bp | CTCAGATCACGTGGAAGGAAAGAGCTCTTTATTGTGTaGCCTTCTGGTGTCTTCCAGCGCGTCGTTCTGTCT | + |
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Preference number: 3 (lower is better) Translates to: LRSRGRKELFIV*PSGVFQRVVLS Trigger: AGACAGAACGACGCGCTGGAAGACACCAGAAGGCCACACAATAAAGAGCTCTTTCCTTCCACGTGATCTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS-3UTR TCA 90 bp | GCAATGGCATCCCAGCTCCTCCGTGCTGACCCGACGCTATCCCCTCTTCTCTTCAGGGGGATGAAGCCCTaGAGCACGCTGTGGATCCGG | + |
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Preference number: 4 (lower is better) Translates to: AMASQLLRADPTLSPLLFRGMKP*STLWIR Trigger: CCGGATCCACAGCGTGCTTCAGGGCTTCATCCCCCT...GAAGAGAAGAGGGGATAGCGTCGGGTCAGCACGGAGGAGCTGGGATGCCATTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS-3UTR TCA 90 bp | AGGCATGGCAGTGGTTACAGTGGTCACATTGGGGACTGGCTCAGCTGCTGTCAGCGAGAGAAGCAAAGGTaGGCAGGCCGACCCCGAGGG | + |
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Preference number: 4 (lower is better) Translates to: RHGSGYSGHIGDWLSCCQREKQR*AGRPRG Trigger: CCCTCGGGGTCGGCCTGCTCACCTTTGCTTCTCTCG...CTGACAGCAGCTGAGCCAGTCCCCAATGTGACCACTGTAACCACTGCCATGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 ENSMUST00000170625.8 |
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| CDS-3UTR TCA 90 bp | GAGGACACCAGAGAGACCCAGGCCCGCAGATGCCAGCCTGCAGAACCCAGGATTTCTGAAGGAGGGGGATaGAGCCCTGAAGCACGCTGT | + |
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Preference number: 4 (lower is better) Translates to: EDTRETQARRCQPAEPRISEGGG*SPEARC Trigger: ACAGCGTGCTTCAGGGCTTCATCCCCCTCCTTCAGA...AATCCTGGGTTCTGCAGGCTGGCATCTGCGGGCCTGGGTCTCTCTGGTGTCCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS-3UTR CCA 90 bp | GCGTCTTACCTGCAACAAGTTCCCCTGGGAACCCAGCCTGGTAGCTCCCTGCCTGTTTCCTGGGACCTCTaGAGGGCTGGTCCTCATCGC | + |
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Preference number: 4 (lower is better) Translates to: ASYLQQVPLGTQPGSSLPVSWDL*RAGPHR Trigger: GCGATGAGGACCAGCCCTCCAGAGGTCCCAGGAAAC...AGGCAGGGAGCTACCAGGCTGGGTTCCCAGGGGAACTTGTTGCAGGTAAGACGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS-3UTR TCA 90 bp | CTTTGGTCCCCAGCGTCTTACCTGCAACAAGTTCCCCTGGGAACCCAGCCTGGTTCCCGGGCCTTCCCATaGTGCTTGTGGAGCTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: LWSPASYLQQVPLGTQPGSRAFP*CLWSSV Trigger: GACAGAGCTCCACAAGCATCATGGGAAGGCCCGGGA...ACCAGGCTGGGTTCCCAGGGGAACTTGTTGCAGGTAAGACGCTGGGGACCAAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS-3UTR TCA 90 bp | AGTGGTTACAGTGGTCACATTGGGGACTGGCTCAGCTGCTGTCAGGCAGTGATCCGAGAGAAGCAAAGGTaGGCAGGCCGACCCCGAGGG | + |
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Preference number: 4 (lower is better) Translates to: SGYSGHIGDWLSCCQAVIREKQR*AGRPRG Trigger: CCCTCGGGGTCGGCCTGCTCACCTTTGCTTCTCTCG...GATCACTGCCTGACAGCAGCTGAGCCAGTCCCCAATGTGACCACTGTAACCACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 ENSMUST00000170625.8 |
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| CDS-3UTR TCA 90 bp | AGGCATGGCAGTGGTTACAGTGGTCACATTGGGGACTGGCTCAGCTGCTGTCAGAGGGGGATGAAGCCCTaGAGCACGCTGTGGATCCGG | + |
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Preference number: 4 (lower is better) Translates to: RHGSGYSGHIGDWLSCCQRGMKP*STLWIR Trigger: CCGGATCCACAGCGTGCTTCAGGGCTTCATCCCCCT...CTGACAGCAGCTGAGCCAGTCCCCAATGTGACCACTGTAACCACTGCCATGCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 ENSMUST00000170625.8 |
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| CDS-3UTR TCA 90 bp | GGTCCCCAGCGTCTTACCTGCAACAAGTTCCCCTGGGAACCCAGCCTGGTAGCTTCTGAAGGAGGGGGATaGAGCCCTGAAGCACGCTGT | + |
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Preference number: 4 (lower is better) Translates to: GPQRLTCNKFPWEPSLVASEGGG*SPEARC Trigger: ACAGCGTGCTTCAGGGCTTCATCCCCCTCCTTCAGA...AGCTACCAGGCTGGGTTCCCAGGGGAACTTGTTGCAGGTAAGACGCTGGGGACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS-3UTR TCA 90 bp | TGGCAGTGGTTACAGTGGTCACATTGGGGACTGGCTCAGCTGCTGTCAGGCAGTGGCAGCCGGAACTTCTaGAGGAGGGGGATGAAGCCC | + |
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Preference number: 4 (lower is better) Translates to: WQWLQWSHWGLAQLLSGSGSRNF*RRGMKP Trigger: GGGCTTCATCCCCCTCCTTCAGAAGTTCCGGCTGCC...ACTGCCTGACAGCAGCTGAGCCAGTCCCCAATGTGACCACTGTAACCACTGCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 ENSMUST00000170625.8 |
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| CDS-3UTR TCA 90 bp | GTAGCTCCCTGCCTCAGAATGGCTGTCCCAAGAAGGCTCTGCAGGAACTGTGAGGGCAGCCGGAACTTCTaGAGGAGGGGGATGAAGCCC | + |
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Preference number: 4 (lower is better) Translates to: VAPCLRMAVPRRLCRNCEGSRNF*RRGMKP Trigger: GGGCTTCATCCCCCTCCTTCAGAAGTTCCGGCTGCC...CTCACAGTTCCTGCAGAGCCTTCTTGGGACAGCCATTCTGAGGCAGGGAGCTAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS-3UTR TCA 90 bp | CTCAGGCATGGCAGTGGTTACAGTGGTCACATTGGGGACTGGCTCAGCTGCTGTGGCAGCCGGAACTTCTaGAGGAGGGGGATGAAGCCC | + |
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Preference number: 4 (lower is better) Translates to: LRHGSGYSGHIGDWLSCCGSRNF*RRGMKP Trigger: GGGCTTCATCCCCCTCCTTCAGAAGTTCCGGCTGCC...ACAGCAGCTGAGCCAGTCCCCAATGTGACCACTGTAACCACTGCCATGCCTGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 ENSMUST00000170625.8 |
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| CDS-3UTR TCA 90 bp | GGCATGGCAGTGGTTACAGTGGTCACATTGGGGACTGGCTCAGCTGCTGTCAGGTCTGAAGGAGGGGGATaGAGCCCTGAAGCACGCTGT | + |
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Preference number: 4 (lower is better) Translates to: GMAVVTVVTLGTGSAAVRSEGGG*SPEARC Trigger: ACAGCGTGCTTCAGGGCTTCATCCCCCTCCTTCAGA...CCTGACAGCAGCTGAGCCAGTCCCCAATGTGACCACTGTAACCACTGCCATGCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 ENSMUST00000170625.8 |
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| CDS-3UTR TCA 90 bp | CTGGTGCCGACACTCAGATCACGTGGAAGGAAAGAGCTCTTTATTGTGTGGCCTGAGGCCATGGCACCGTaGCAGCAGAGGGCGGGGCAA | + |
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Preference number: 4 (lower is better) Translates to: LVPTLRSRGRKELFIVWPEAMAP*QQRAGQ Trigger: TTGCCCCGCCCTCTGCTGTCACGGTGCCATGGCCTC...AGGCCACACAATAAAGAGCTCTTTCCTTCCACGTGATCTGAGTGTCGGCACCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112946.8 |
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| CDS-3UTR CCA 90 bp | ATGGCAGTGGTTACAGTGGTCACATTGGGGACTGGCTCAGCTGCTGTCAGGCAGGTTTCCTGGGACCTCTaGAGGGCTGGTCCTCATCGC | + |
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Preference number: 4 (lower is better) Translates to: MAVVTVVTLGTGSAAVRQVSWDL*RAGPHR Trigger: GCGATGAGGACCAGCCCTCCAGAGGTCCCAGGAAAC...CTGCCTGACAGCAGCTGAGCCAGTCCCCAATGTGACCACTGTAACCACTGCCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS-3UTR TCA 90 bp | CGTCTTACCTGCAACAAGTTCCCCTGGGAACCCAGCCTGGTAGCTCCCTGCCTCCTGGGAAGAAGATCCTaGAGCCTCCATGACTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: RLTCNKFPWEPSLVAPCLLGRRS*SLHDFP Trigger: GGGAAAGTCATGGAGGCTTCAGGATCTTCTTCCCAG...GAGGCAGGGAGCTACCAGGCTGGGTTCCCAGGGGAACTTGTTGCAGGTAAGACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112946.8 |
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| CDS-3UTR GCA 90 bp | TGGCAGTGGTTACAGTGGTCACATTGGGGACTGGCTCAGCTGCTGTCAGGCAGTGCTGGTCCTCATCGCTaGTGTCTGAGGAGGAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: WQWLQWSHWGLAQLLSGSAGPHR*CLRRRK Trigger: CTTCCTCCTCCTCAGACAGCAGCGATGAGGACCAGC...ACTGCCTGACAGCAGCTGAGCCAGTCCCCAATGTGACCACTGTAACCACTGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS-3UTR CCA 90 bp | GGCATGGCAGTGGTTACAGTGGTCACATTGGGGACTGGCTCAGCTGCTGTCAGGTCCTTCTGTGTTTCCTaGGACCTCTGGAGGGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: GMAVVTVVTLGTGSAAVRSFCVS*DLWRAG Trigger: ACCAGCCCTCCAGAGGTCCCAGGAAACACAGAAGGA...CCTGACAGCAGCTGAGCCAGTCCCCAATGTGACCACTGTAACCACTGCCATGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR CAA 72 bp | CCCGCAGATGCCAGCCTGCAGAACCCAGGATTCATGTaGACCTATGAGCAATGGCATCCCAGCTCCTCCGTG | + |
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Preference number: 4 (lower is better) Translates to: PADASLQNPGFM*TYEQWHPSSSV Trigger: CACGGAGGAGCTGGGATGCCATTGCTCATAGGTCAACATGAATCCTGGGTTCTGCAGGCTGGCATCTGCGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS-3UTR CCA 90 bp | CTCAGGCATGGCAGTGGTTACAGTGGTCACATTGGGGACTGGCTCAGCTGCTGTTCCTTCTGTGTTTCCTaGGACCTCTGGAGGGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: LRHGSGYSGHIGDWLSCCSFCVS*DLWRAG Trigger: ACCAGCCCTCCAGAGGTCCCAGGAAACACAGAAGGA...ACAGCAGCTGAGCCAGTCCCCAATGTGACCACTGTAACCACTGCCATGCCTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS-3UTR TCA 90 bp | CCTGGTAGCTCCCTGCCTCAGAATGGCTGTCCCAAGAAGGCTCTGCAGGAACTGACTCCACCACTGTCTTaGGACTGGGAAGAAGATCCT | + |
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Preference number: 4 (lower is better) Translates to: PGSSLPQNGCPKKALQELTPPLS*DWEEDP Trigger: AGGATCTTCTTCCCAGTCTCAAGACAGTGGTGGAGT...CAGTTCCTGCAGAGCCTTCTTGGGACAGCCATTCTGAGGCAGGGAGCTACCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS-3UTR TCA 90 bp | AGTGGTTACAGTGGTCACATTGGGGACTGGCTCAGCTGCTGTCAGGCAGTGATCATCCTGAAGCCTCCATaGCTTTCCCTGGAGTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: SGYSGHIGDWLSCCQAVIILKPP*LSLESL Trigger: CAGGGACTCCAGGGAAAGTCATGGAGGCTTCAGGAT...GATCACTGCCTGACAGCAGCTGAGCCAGTCCCCAATGTGACCACTGTAACCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112946.8 |
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| CDS-3UTR TCA 90 bp | CTCAGGCATGGCAGTGGTTACAGTGGTCACATTGGGGACTGGCTCAGCTGCTGTACTCCACCACTGTCTTaGGACTGGGAAGAAGATCCT | + |
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Preference number: 4 (lower is better) Translates to: LRHGSGYSGHIGDWLSCCTPPLS*DWEEDP Trigger: AGGATCTTCTTCCCAGTCTCAAGACAGTGGTGGAGT...ACAGCAGCTGAGCCAGTCCCCAATGTGACCACTGTAACCACTGCCATGCCTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 ENSMUST00000170625.8 |
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| CDS-3UTR TCA 90 bp | CAGGCATGGCAGTGGTTACAGTGGTCACATTGGGGACTGGCTCAGCTGCTGTCAACTCCACCACTGTCTTaGGACTGGGAAGAAGATCCT | + |
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Preference number: 4 (lower is better) Translates to: QAWQWLQWSHWGLAQLLSTPPLS*DWEEDP Trigger: AGGATCTTCTTCCCAGTCTCAAGACAGTGGTGGAGT...TGACAGCAGCTGAGCCAGTCCCCAATGTGACCACTGTAACCACTGCCATGCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 ENSMUST00000170625.8 |
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| CDS-3UTR TCA 90 bp | TGCCGACACTCAGATCACGTGGAAGGAAAGAGCTCTTTATTGTGTGGCCTTCTGTCCCGGGCCTTCCCATaGTGCTTGTGGAGCTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: CRHSDHVEGKSSLLCGLLSRAFP*CLWSSV Trigger: GACAGAGCTCCACAAGCATCATGGGAAGGCCCGGGA...CAGAAGGCCACACAATAAAGAGCTCTTTCCTTCCACGTGATCTGAGTGTCGGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS-3UTR TCA 90 bp | ACTCAGATCACGTGGAAGGAAAGAGCTCTTTATTGTGTGGCCTTCTGGTGTCTTAGGGGGATGAAGCCCTaGAGCACGCTGTGGATCCGG | + |
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Preference number: 4 (lower is better) Translates to: TQITWKERALYCVAFWCLRGMKP*STLWIR Trigger: CCGGATCCACAGCGTGCTTCAGGGCTTCATCCCCCT...AAGACACCAGAAGGCCACACAATAAAGAGCTCTTTCCTTCCACGTGATCTGAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR CAA 72 bp | CGACACTCAGATCACGTGGAAGGAAAGAGCTCTTTATaGTGTGGCCTTCTGGTGTCTTCCAGCGCGTCGTTC | + |
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Preference number: 4 (lower is better) Translates to: RHSDHVEGKSSL*CGLLVSSSASF Trigger: GAACGACGCGCTGGAAGACACCAGAAGGCCACACAATAAAGAGCTCTTTCCTTCCACGTGATCTGAGTGTCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS-3UTR GCA 90 bp | ACTCAGATCACGTGGAAGGAAAGAGCTCTTTATTGTGTGGCCTTCTGGTGTCTTGCTGGTCCTCATCGCTaGTGTCTGAGGAGGAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: TQITWKERALYCVAFWCLAGPHR*CLRRRK Trigger: CTTCCTCCTCCTCAGACAGCAGCGATGAGGACCAGC...AAGACACCAGAAGGCCACACAATAAAGAGCTCTTTCCTTCCACGTGATCTGAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS-3UTR CCA 90 bp | TGCCGACACTCAGATCACGTGGAAGGAAAGAGCTCTTTATTGTGTGGCCTTCTGCCAGCAAGGCTCCGATaGCAAAGCAGAGAAGGACAA | + |
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Preference number: 4 (lower is better) Translates to: CRHSDHVEGKSSLLCGLLPARLR*QSREGQ Trigger: TTGTCCTTCTCTGCTTTGCCATCGGAGCCTTGCTGG...CAGAAGGCCACACAATAAAGAGCTCTTTCCTTCCACGTGATCTGAGTGTCGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| 3UTR CAA 72 bp | ATTTATTTGGATTTTAGGAGTCCAAGGGCAACAGGGTaGGTCAGCTATGATGGGTCCGCAGCTTTGGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: IYLDFRSPRATG*VSYDGSAALVP Trigger: GGGGACCAAAGCTGCGGACCCATCATAGCTGACCAACCCTGTTGCCCTTGGACTCCTAAAATCCAAATAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS GCA 90 bp | TCCTTCTGTGTTTCCTGGGACCTCTGGAGGGCTGGTCCTCATCGCTaGTGTCTGAGGAGGAGGAAGAAGATGAGGAGGAAGAGGAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: SFCVSWDLWRAGPHR*CLRRRKKMRRKRRK Trigger: CTTCCTCCTCTTCCTCCTCATCTTCTTCCTCCTCCTCAGACAGCAGCGATGAGGACCAGCCCTCCAGAGGTCCCAGGAAACACAGAAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 ENSMUST00000166254.7 |
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| CDS TCA 90 bp | TTCCCTGTGGACTCCACCACTGTCTTGAGACTGGGAAGAAGATCCTaGAGCCTCCATGACTTTCCCTGGAGTCCCTGGGCTCATGTGAGC | + |
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Preference number: 5 (lower is better) Translates to: FPVDSTTVLRLGRRS*SLHDFPWSPWAHVS Trigger: GCTCACATGAGCCCAGGGACTCCAGGGAAAGTCATGGAGGCTTCAGGATCTTCTTCCCAGTCTCAAGACAGTGGTGGAGTCCACAGGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112946.8 |
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| CDS-3UTR CAA 90 bp | ATGTTGACCTATGAGCAATGGCATCCCAGCTCCTCCGTGCTGACCCGACGCTATGACTCCACCACTGTCTaGAGACTGGGAAGAAGATCC | + |
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Preference number: 5 (lower is better) Translates to: MLTYEQWHPSSSVLTRRYDSTTV*RLGRRS Trigger: GGATCTTCTTCCCAGTCTCAAGACAGTGGTGGAGTC...ATAGCGTCGGGTCAGCACGGAGGAGCTGGGATGCCATTGCTCATAGGTCAACAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS-3UTR CAA 90 bp | CAGTGGTTACAGTGGTCACATTGGGGACTGGCTCAGCTGCTGTCAGGCAGTGATGACTCCACCACTGTCTaGAGACTGGGAAGAAGATCC | + |
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Preference number: 5 (lower is better) Translates to: QWLQWSHWGLAQLLSGSDDSTTV*RLGRRS Trigger: GGATCTTCTTCCCAGTCTCAAGACAGTGGTGGAGTC...ATCACTGCCTGACAGCAGCTGAGCCAGTCCCCAATGTGACCACTGTAACCACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 ENSMUST00000170625.8 |
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| CDS-3UTR CAA 90 bp | ACAAGGAACAGAAAATTTATTTGGATTTTAGGAGTCCAAGGGCAACAGGGTTGGGACTCCACCACTGTCTaGAGACTGGGAAGAAGATCC | + |
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Preference number: 5 (lower is better) Translates to: TRNRKFIWILGVQGQQGWDSTTV*RLGRRS Trigger: GGATCTTCTTCCCAGTCTCAAGACAGTGGTGGAGTC...CCAACCCTGTTGCCCTTGGACTCCTAAAATCCAAATAAATTTTCTGTTCCTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 |
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| CDS GCA 72 bp | CCAGTTCCCCATGGTCGGCACCACGCAAGCTGTCCCTaGGGGGCCTCCTTCTGTGTTTCCTGGGACCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: PVPHGRHHASCP*GASFCVSWDLW Trigger: CCAGAGGTCCCAGGAAACACAGAAGGAGGCCCCGCAGGGACAGCTTGCGTGGTGCCGACCATGGGGAACTGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 ENSMUST00000166254.7 |
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| CDS CCA 72 bp | CCCTGCGGGGCCTCCTTCTGTGTTTCCTGGGACCTCTaGAGGGCTGGTCCTCATCGCTGCTGTCTGAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: PCGASFCVSWDL*RAGPHRCCLRR Trigger: CCTCCTCAGACAGCAGCGATGAGGACCAGCCCTCCAGAGGTCCCAGGAAACACAGAAGGAGGCCCCGCAGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 ENSMUST00000166254.7 |
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| CDS CCA 72 bp | GGCCTCCTTCTGTGTTTCCTGGGACCTCTGGAGGGCTaGTCCTCATCGCTGCTGTCTGAGGAGGAGGAAGAA | + |
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Preference number: 6 (lower is better) Translates to: GLLLCFLGPLEG*SSSLLSEEEEE Trigger: TTCTTCCTCCTCCTCAGACAGCAGCGATGAGGACCAGCCCTCCAGAGGTCCCAGGAAACACAGAAGGAGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 ENSMUST00000166254.7 |
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| CDS TCA 72 bp | GTAGGCACCATTTCCCCAGCAGCACCTCCGCAGAGCTaGAGCTCGTCCTTTAGCACTTCCAGTTCCCCATGG | + |
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Preference number: 6 (lower is better) Translates to: VGTISPAAPPQS*SSSFSTSSSPW Trigger: CCATGGGGAACTGGAAGTGCTAAAGGACGAGCTTCAGCTCTGCGGAGGTGCTGCTGGGGAAATGGTGCCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000072933.13 ENSMUST00000112946.8 ENSMUST00000166254.7 ENSMUST00000170625.8 |
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| CDS TCA 72 bp | GACTCCACCACTGTCTTGAGACTGGGAAGAAGATCCTaGAGCCTCCATGACTTTCCCTGGAGTCCCTGGGCT | + |
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Preference number: 6 (lower is better) Translates to: DSTTVLRLGRRS*SLHDFPWSPWA Trigger: AGCCCAGGGACTCCAGGGAAAGTCATGGAGGCTTCAGGATCTTCTTCCCAGTCTCAAGACAGTGGTGGAGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112946.8 |
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