Pregenerated sensors for TMEM38B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028420Ensembl transcript IDs: ENSMUST00000030127.13, ENSMUST00000144167.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GTGAAGACTATCTCTCTCCAGCTGGTGACACAAAACAGCCCAGGTTCCAACCACACTACACCGCTAGCCTaGCACGGTGGCCCGGACCCA | + |
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Preference number: 2 (lower is better) Translates to: VKTISLQLVTQNSPGSNHTTPLA*HGGPDP Trigger: TGGGTCCGGGCCACCGTGCCAGGCTAGCGGTGTAGT...GTGGTTGGAACCTGGGCTGTTTTGTGTCACCAGCTGGAGAGAGATAGTCTTCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| 3UTR-3UTR TCA 90 bp | TCACTTAAGTGCTTCTTAACCAACCAAAAATGCCTAACACAGACGGCAGGCCCAAGCGAGCGGTGTCCCTaGACCAAAGCACTTCCTCTT | + |
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Preference number: 2 (lower is better) Translates to: SLKCFLTNQKCLTQTAGPSERCP*TKALPL Trigger: AAGAGGAAGTGCTTTGGTTCAGGGACACCGCTCGCT...TGGGCCTGCCGTCTGTGTTAGGCATTTTTGGTTGGTTAAGAAGCACTTAAGTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| 3UTR-3UTR TCA 90 bp | TCACTTAAGTGCTTCTTAACCAACCAAAAATGCCTAACACAGACGGCAGGCCCACAGCACTTTGGAAGCTaGGGTAGAAGGTCTGTGGCC | + |
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Preference number: 2 (lower is better) Translates to: SLKCFLTNQKCLTQTAGPQHFGS*GRRSVA Trigger: GGCCACAGACCTTCTACCTCAGCTTCCAAAGTGCTG...TGGGCCTGCCGTCTGTGTTAGGCATTTTTGGTTGGTTAAGAAGCACTTAAGTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| 3UTR-3UTR TCA 90 bp | GTGGCCCGGACCCATAATCCCAGCACTTTGGAAGCTGAGGTAGAAGGTCTGTGGAAAAATAAATTCACATaGTACACTCGTGACCCCAAG | + |
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Preference number: 2 (lower is better) Translates to: VARTHNPSTLEAEVEGLWKNKFT*YTRDPK Trigger: CTTGGGGTCACGAGTGTATCATGTGAATTTATTTTT...CCACAGACCTTCTACCTCAGCTTCCAAAGTGCTGGGATTATGGGTCCGGGCCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| 3UTR-3UTR TCA 90 bp | TCACTTAAGTGCTTCTTAACCAACCAAAAATGCCTAACACAGACGGCAGGCCCAAGTCCTCAGGAGAGCTaGGCATTTTCACAGGAAAAC | + |
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Preference number: 2 (lower is better) Translates to: SLKCFLTNQKCLTQTAGPSPQES*AFSQEN Trigger: GTTTTCCTGTGAAAATGCTCAGCTCTCCTGAGGACT...TGGGCCTGCCGTCTGTGTTAGGCATTTTTGGTTGGTTAAGAAGCACTTAAGTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| 3UTR-3UTR GCA 90 bp | TCACTTAAGTGCTTCTTAACCAACCAAAAATGCCTAACACAGACGGCAGGCCCACTCAGTCAAGTAGTCTaGCACATAAGGTTAGGTTCT | + |
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Preference number: 2 (lower is better) Translates to: SLKCFLTNQKCLTQTAGPLSQVV*HIRLGS Trigger: AGAACCTAACCTTATGTGGCAGACTACTTGACTGAG...TGGGCCTGCCGTCTGTGTTAGGCATTTTTGGTTGGTTAAGAAGCACTTAAGTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| 3UTR-3UTR GCA 90 bp | TCACTTAAGTGCTTCTTAACCAACCAAAAATGCCTAACACAGACGGCAGGCCCAAGCAGAGATACCAAATaGAAACTTGCAAGAAGAGAC | + |
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Preference number: 2 (lower is better) Translates to: SLKCFLTNQKCLTQTAGPSRDTK*KLARRD Trigger: GTCTCTTCTTGCAAGTTTGCATTTGGTATCTCTGCT...TGGGCCTGCCGTCTGTGTTAGGCATTTTTGGTTGGTTAAGAAGCACTTAAGTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| 3UTR CAA 90 bp | TGCTTGCTTGCTTTTTACTTTGTCCACGAGACAGCAGGTTTAATGTaGTATTGTCTCAGTCAAGTAGTCTGCCACATAAGGTTAGGTTCT | + |
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Preference number: 2 (lower is better) Translates to: CLLAFYFVHETAGLM*YCLSQVVCHIRLGS Trigger: AGAACCTAACCTTATGTGGCAGACTACTTGACTGAGACAATACAACATTAAACCTGCTGTCTCGTGGACAAAGTAAAAAGCAAGCAAGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| 3UTR CAA 90 bp | AGTTATGCACCAAATCGAGCAAATAGAATCTATCACTTAGTATGTTaGCTTGCTTGCTTTTTACTTTGTCCACGAGACAGCAGGTTTAAT | + |
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Preference number: 2 (lower is better) Translates to: SYAPNRANRIYHLVC*LACFLLCPRDSRFN Trigger: ATTAAACCTGCTGTCTCGTGGACAAAGTAAAAAGCAAGCAAGCAAACATACTAAGTGATAGATTCTATTTGCTCGATTTGGTGCATAACT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| 3UTR GCA 72 bp | GCGGTCTCCCATCCAAGTACTAACCAGGCCCGACCCTaGTTAGCTCCAGAGATCAGACAAGATCGGGCGTGT | + |
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Preference number: 3 (lower is better) Translates to: AVSHPSTNQARP*LAPEIRQDRAC Trigger: ACACGCCCGATCTTGTCTGATCTCTGGAGCTAAGCAGGGTCGGGCCTGGTTAGTACTTGGATGGGAGACCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| 3UTR CCA 72 bp | ATTAACAATAAAAACTACACCGCTAGCCTGGCACGGTaGCCCGGACCCATAATCCCAGCACTTTGGAAGCTG | + |
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Preference number: 3 (lower is better) Translates to: INNKNYTASLAR*PGPIIPALWKL Trigger: CAGCTTCCAAAGTGCTGGGATTATGGGTCCGGGCCACCGTGCCAGGCTAGCGGTGTAGTTTTTATTGTTAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| 3UTR TCA 72 bp | TGCAAGAAGAGACAGTCAAATAAACTCGTGAAGCAATaGTCGCCGGAAGAGGTGCAGGACACCGTTTCAGCC | + |
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Preference number: 3 (lower is better) Translates to: CKKRQSNKLVKQ*SPEEVQDTVSA Trigger: GGCTGAAACGGTGTCCTGCACCTCTTCCGGCGATCATTGCTTCACGAGTTTATTTGACTGTCTCTTCTTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| 3UTR TCA 72 bp | GTCACAGAGACATGCCACCAGCCTGTTCAGACCAACTaGGTCAGGAGAAACATACAACATGTGAAGACTATC | + |
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Preference number: 3 (lower is better) Translates to: VTETCHQPVQTN*VRRNIQHVKTI Trigger: GATAGTCTTCACATGTTGTATGTTTCTCCTGACTCAGTTGGTCTGAACAGGCTGGTGGCATGTCTCTGTGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| 3UTR GCA 72 bp | CACATATCTATTGAGCAGAGATACCAAATGCAAACTTaGAAGAAGAGACAGTCAAATAAACTCGTGAAGCAA | + |
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Preference number: 3 (lower is better) Translates to: HISIEQRYQMQT*KKRQSNKLVKQ Trigger: TTGCTTCACGAGTTTATTTGACTGTCTCTTCTTGCAAGTTTGCATTTGGTATCTCTGCTCAATAGATATGTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| 3UTR GCA 72 bp | AATACACGCACATATCTATTGAGCAGAGATACCAAATaGAAACTTGCAAGAAGAGACAGTCAAATAAACTCG | + |
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Preference number: 3 (lower is better) Translates to: NTRTYLLSRDTK*KLARRDSQINS Trigger: CGAGTTTATTTGACTGTCTCTTCTTGCAAGTTTGCATTTGGTATCTCTGCTCAATAGATATGTGCGTGTATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR CCA 90 bp | GTGAAGACTATCTCTCTCCAGCTGGTGACACAAAACAGCCCAGGTTCCAACCACCGCCGCCACTGCTCCTaGCCGCTGCTTCAGCGCCAT | + |
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Preference number: 4 (lower is better) Translates to: VKTISLQLVTQNSPGSNHRRHCS*PLLQRH Trigger: ATGGCGCTGAAGCAGCGGCCAGGAGCAGTGGCGGCG...GTGGTTGGAACCTGGGCTGTTTTGTGTCACCAGCTGGAGAGAGATAGTCTTCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR GCA 90 bp | GTGAAGACTATCTCTCTCCAGCTGGTGACACAAAACAGCCCAGGTTCCAACCACACCACCCGAAGGCTCTaGTCCCCGCTTCGATGCACT | + |
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Preference number: 4 (lower is better) Translates to: VKTISLQLVTQNSPGSNHTTRRL*SPLRCT Trigger: AGTGCATCGAAGCGGGGAGCAGAGCCTTCGGGTGGT...GTGGTTGGAACCTGGGCTGTTTTGTGTCACCAGCTGGAGAGAGATAGTCTTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR GCA 90 bp | CATCATTCACAGAACCACGGGCACACTCTGAGAGAAGTAACTCCTCCTCCTGCCTTTGAGATCGCCAGGTaGCTGGTGTGCTGGAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: HHSQNHGHTLREVTPPPAFEIAR*LVCWKV Trigger: CACCTTCCAGCACACCAGGCACCTGGCGATCTCAAA...GGCAGGAGGAGGAGTTACTTCTCTCAGAGTGTGCCCGTGGTTCTGTGAATGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR GCA 90 bp | CATCATTCACAGAACCACGGGCACACTCTGAGAGAAGTAACTCCTCCTCCTGCCAGGGAAACATGGACGTaGGGGAAAAGGCCAGAGTCA | + |
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Preference number: 4 (lower is better) Translates to: HHSQNHGHTLREVTPPPARETWT*GKRPES Trigger: TGACTCTGGCCTTTTCCCGCACGTCCATGTTTCCCT...GGCAGGAGGAGGAGTTACTTCTCTCAGAGTGTGCCCGTGGTTCTGTGAATGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR GCA 90 bp | GTGAAGACTATCTCTCTCCAGCTGGTGACACAAAACAGCCCAGGTTCCAACCACGATGAAAACTGCTGCTaGTGCCGCCGGCCAAAAAGC | + |
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Preference number: 4 (lower is better) Translates to: VKTISLQLVTQNSPGSNHDENCC*CRRPKS Trigger: GCTTTTTGGCCGGCGGCAGCAGCAGCAGTTTTCATC...GTGGTTGGAACCTGGGCTGTTTTGTGTCACCAGCTGGAGAGAGATAGTCTTCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR TCA 90 bp | CATCATTCACAGAACCACGGGCACACTCTGAGAGAAGTAACTCCTCCTCCTGCCTTTCTTTTCACTCGATaGAAACTGCTGCTGCTGCCG | + |
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Preference number: 4 (lower is better) Translates to: HHSQNHGHTLREVTPPPAFLFTR*KLLLLP Trigger: CGGCAGCAGCAGCAGTTTTCATCGAGTGAAAAGAAA...GGCAGGAGGAGGAGTTACTTCTCTCAGAGTGTGCCCGTGGTTCTGTGAATGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR GCA 90 bp | TCACTTAAGTGCTTCTTAACCAACCAAAAATGCCTAACACAGACGGCAGGCCCATCACTCGATGAAAACTaGTGCTGCTGCCGCCGGCCA | + |
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Preference number: 4 (lower is better) Translates to: SLKCFLTNQKCLTQTAGPSLDEN*CCCRRP Trigger: TGGCCGGCGGCAGCAGCAGCAGTTTTCATCGAGTGA...TGGGCCTGCCGTCTGTGTTAGGCATTTTTGGTTGGTTAAGAAGCACTTAAGTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR TCA 90 bp | TATTCCCAGGCGGTCTCCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTCATTGGAAGACGGTTTaGCTTCAGTTTTCTTTTCAC | + |
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Preference number: 4 (lower is better) Translates to: YSQAVSHPSTNQARPCLAHWKTV*LQFSFH Trigger: GTGAAAAGAAAACTGAAGTCAAACCGTCTTCCAATG...AGCTAAGCAGGGTCGGGCCTGGTTAGTACTTGGATGGGAGACCGCCTGGGAATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR GCA 90 bp | ACATCATTCACAGAACCACGGGCACACTCTGAGAGAAGTAACTCCTCCTCCTGCCCAGCAGGGTTATCTTaGAAGGGAAGGACATCTTCA | + |
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Preference number: 4 (lower is better) Translates to: TSFTEPRAHSERSNSSSCPAGLS*KGRTSS Trigger: TGAAGATGTCCTTCCCTTGCAAGATAACCCTGCTGG...GCAGGAGGAGGAGTTACTTCTCTCAGAGTGTGCCCGTGGTTCTGTGAATGATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR GCA 90 bp | GTGAAGACTATCTCTCTCCAGCTGGTGACACAAAACAGCCCAGGTTCCAACCACAGGAACATGAGATCATaGTTTGAGATCGCCAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: VKTISLQLVTQNSPGSNHRNMRS*FEIARC Trigger: GCACCTGGCGATCTCAAAGCATGATCTCATGTTCCT...GTGGTTGGAACCTGGGCTGTTTTGTGTCACCAGCTGGAGAGAGATAGTCTTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR CCA 90 bp | GTGGCCCGGACCCATAATCCCAGCACTTTGGAAGCTGAGGTAGAAGGTCTGTGGTGTAAGAAACTTCAATaGAGACTCTGCAAGCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: VARTHNPSTLEAEVEGLWCKKLQ*RLCKQH Trigger: ATGCTGCTTGCAGAGTCTCCATTGAAGTTTCTTACA...CCACAGACCTTCTACCTCAGCTTCCAAAGTGCTGGGATTATGGGTCCGGGCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR CCA 90 bp | GTGGCCCGGACCCATAATCCCAGCACTTTGGAAGCTGAGGTAGAAGGTCTGTGGCCTTTGTCATCATCATaGTTACCTTTATGGTCACGA | + |
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Preference number: 4 (lower is better) Translates to: VARTHNPSTLEAEVEGLWPLSSS*LPLWSR Trigger: TCGTGACCATAAAGGTAACCATGATGATGACAAAGG...CCACAGACCTTCTACCTCAGCTTCCAAAGTGCTGGGATTATGGGTCCGGGCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR TCA 90 bp | ACATCATTCACAGAACCACGGGCACACTCTGAGAGAAGTAACTCCTCCTCCTGCGAAGGTGAACATAATTaGCCCCAGCAGGGTTATCTT | + |
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Preference number: 4 (lower is better) Translates to: TSFTEPRAHSERSNSSSCEGEHN*PQQGYL Trigger: AAGATAACCCTGCTGGGGTCAATTATGTTCACCTTC...GCAGGAGGAGGAGTTACTTCTCTCAGAGTGTGCCCGTGGTTCTGTGAATGATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR GCA 90 bp | TCACTTAAGTGCTTCTTAACCAACCAAAAATGCCTAACACAGACGGCAGGCCCAGCCAGGTGCCTGGTGTaGTGGAAGGTGAACATAATT | + |
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Preference number: 4 (lower is better) Translates to: SLKCFLTNQKCLTQTAGPARCLV*WKVNII Trigger: AATTATGTTCACCTTCCAGCACACCAGGCACCTGGC...TGGGCCTGCCGTCTGTGTTAGGCATTTTTGGTTGGTTAAGAAGCACTTAAGTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| 3UTR CAA 72 bp | TTACTTTGTCCACGAGACAGCAGGTTTAATGTTGTATaGTCTCAGTCAAGTAGTCTGCCACATAAGGTTAGG | + |
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Preference number: 4 (lower is better) Translates to: LLCPRDSRFNVV*SQSSSLPHKVR Trigger: CCTAACCTTATGTGGCAGACTACTTGACTGAGACAATACAACATTAAACCTGCTGTCTCGTGGACAAAGTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| 3UTR CAA 72 bp | GCTTTTTACTTTGTCCACGAGACAGCAGGTTTAATGTaGTATTGTCTCAGTCAAGTAGTCTGCCACATAAGG | + |
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Preference number: 4 (lower is better) Translates to: AFYFVHETAGLM*YCLSQVVCHIR Trigger: CCTTATGTGGCAGACTACTTGACTGAGACAATACAACATTAAACCTGCTGTCTCGTGGACAAAGTAAAAAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS CCA 90 bp | CAGCCAGCTAGCCAGGGGGTTATTCCAGGCCGCCGCCACTGCTCCTaGCCGCTGCTTCAGCGCCATCACCGACACCAGGTAGTGGGCGAT | + |
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Preference number: 5 (lower is better) Translates to: QPASQGVIPGRRHCS*PLLQRHHRHQVVGD Trigger: ATCGCCCACTACCTGGTGTCGGTGATGGCGCTGAAGCAGCGGCCAGGAGCAGTGGCGGCGGCCTGGAATAACCCCCTGGCTAGCTGGCTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR CAA 90 bp | TATTCCCAGGCGGTCTCCCATCCAAGTACTAACCAGGCCCGACCCTGCTTAGCTCCCAGCAGGGTTATCTaGCAAGGGAAGGACATCTTC | + |
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Preference number: 5 (lower is better) Translates to: YSQAVSHPSTNQARPCLAPSRVI*QGKDIF Trigger: GAAGATGTCCTTCCCTTGCAAGATAACCCTGCTGGG...AGCTAAGCAGGGTCGGGCCTGGTTAGTACTTGGATGGGAGACCGCCTGGGAATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS TCA 90 bp | CACCTTCTGGTTTCCAGTCTCCTTTTAACAACTGTTCACAAGCTGTaGCGACAGCACCACCTGCACCTCGGGCCCATCCAACAACTATCA | + |
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Preference number: 5 (lower is better) Translates to: HLLVSSLLLTTVHKL*RQHHLHLGPIQQLS Trigger: TGATAGTTGTTGGATGGGCCCGAGGTGCAGGTGGTGCTGTCGTCACAGCTTGTGAACAGTTGTTAAAAGGAGACTGGAAACCAGAAGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030127.13 ENSMUST00000144167.2 |
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| CDS TCA 90 bp | GCCGCCGGCCAAAAAGCATCCGAGTCAGGGTGTCCTCAAAGGGAGTaGGAGTCACAGCAGTATCCTTTGTCATCATCATGGTTACCTTTA | + |
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Preference number: 5 (lower is better) Translates to: AAGQKASESGCPQRE*ESQQYPLSSSWLPL Trigger: TAAAGGTAACCATGATGATGACAAAGGATACTGCTGTGACTCTCACTCCCTTTGAGGACACCCTGACTCGGATGCTTTTTGGCCGGCGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR CAA 90 bp | ACATCATTCACAGAACCACGGGCACACTCTGAGAGAAGTAACTCCTCCTCCTGCCCATTGGAAGACGGTTaGACTTCAGTTTTCTTTTCA | + |
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Preference number: 5 (lower is better) Translates to: TSFTEPRAHSERSNSSSCPLEDG*TSVFFS Trigger: TGAAAAGAAAACTGAAGTCAAACCGTCTTCCAATGG...GCAGGAGGAGGAGTTACTTCTCTCAGAGTGTGCCCGTGGTTCTGTGAATGATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS-3UTR CAA 90 bp | AGAAATACACGCACATATCTATTGAGCAGAGATACCAAATGCAAACTTGCAAGACCCGCTTCGATGCACTaGAGGCAGAACCATTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: RNTRTYLLSRDTKCKLARPASMH*RQNHWK Trigger: CTTCCAATGGTTCTGCCTCAAGTGCATCGAAGCGGG...TCTTGCAAGTTTGCATTTGGTATCTCTGCTCAATAGATATGTGCGTGTATTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS CCA 72 bp | AGCCAGGGGGTTATTCCAGGCCGCCGCCACTGCTCCTaGCCGCTGCTTCAGCGCCATCACCGACACCAGGTA | + |
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Preference number: 6 (lower is better) Translates to: SQGVIPGRRHCS*PLLQRHHRHQV Trigger: TACCTGGTGTCGGTGATGGCGCTGAAGCAGCGGCCAGGAGCAGTGGCGGCGGCCTGGAATAACCCCCTGGCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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| CDS TCA 72 bp | GTTTCCAGTCTCCTTTTAACAACTGTTCACAAGCTGTaGCGACAGCACCACCTGCACCTCGGGCCCATCCAA | + |
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Preference number: 6 (lower is better) Translates to: VSSLLLTTVHKL*RQHHLHLGPIQ Trigger: TTGGATGGGCCCGAGGTGCAGGTGGTGCTGTCGTCACAGCTTGTGAACAGTTGTTAAAAGGAGACTGGAAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030127.13 ENSMUST00000144167.2 |
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| CDS TCA 72 bp | CAAAAAGCATCCGAGTCAGGGTGTCCTCAAAGGGAGTaGGAGTCACAGCAGTATCCTTTGTCATCATCATGG | + |
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Preference number: 6 (lower is better) Translates to: QKASESGCPQRE*ESQQYPLSSSW Trigger: CCATGATGATGACAAAGGATACTGCTGTGACTCTCACTCCCTTTGAGGACACCCTGACTCGGATGCTTTTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030127.13 |
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