Pregenerated sensors for TMEM35B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070737Ensembl transcript IDs: ENSMUST00000094712.5, ENSMUST00000106097.9
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCAGGAGAGGGTGCCAGATCCTCTGAAACCAGATGTAGAGGGTTATaGGCCGCCATGAGGATGCTGGGAACTGAACCCAGGCCCTTTGCA | + |
|
Preference number: 1 (lower is better) Translates to: PGEGARSSETRCRGL*AAMRMLGTEPRPFA Trigger: TGCAAAGGGCCTGGGTTCAGTTCCCAGCATCCTCATGGCGGCTCATAACCCTCTACATCTGGTTTCAGAGGATCTGGCACCCTCTCCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| 3UTR TCA 90 bp | GTGCCAGATCCTCTGAAACCAGATGTAGAGGGTTATGAGCCGCCATaGGGATGCTGGGAACTGAACCCAGGCCCTTTGCACAAGCAGCAA | + |
|
Preference number: 1 (lower is better) Translates to: VPDPLKPDVEGYEPP*GCWELNPGPLHKQQ Trigger: TTGCTGCTTGTGCAAAGGGCCTGGGTTCAGTTCCCAGCATCCTCATGGCGGCTCATAACCCTCTACATCTGGTTTCAGAGGATCTGGCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| 3UTR CCA 90 bp | CGTTTATTTTATGTGCATAAGTGCTTTGCATACTATGAGCATGTCTaGTGCTCCAAAAGGCCAGGAGAGGGTGCCAGATCCTCTGAAACC | + |
|
Preference number: 1 (lower is better) Translates to: RLFYVHKCFAYYEHV*CSKRPGEGARSSET Trigger: GGTTTCAGAGGATCTGGCACCCTCTCCTGGCCTTTTGGAGCACCAGACATGCTCATAGTATGCAAAGCACTTATGCACATAAAATAAACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| 3UTR GCA 90 bp | TTATTTTATGTGCATAAGTGCTTTGCATACTATGAGCATGTCTGGTaGTCCAAAAGGCCAGGAGAGGGTGCCAGATCCTCTGAAACCAGA | + |
|
Preference number: 1 (lower is better) Translates to: LFYVHKCFAYYEHVW*SKRPGEGARSSETR Trigger: TCTGGTTTCAGAGGATCTGGCACCCTCTCCTGGCCTTTTGGAGCACCAGACATGCTCATAGTATGCAAAGCACTTATGCACATAAAATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| 3UTR-3UTR TCA 90 bp | CATGTCTGGTGCTCCAAAAGGCCAGGAGAGGGTGCCAGATCCTCTGAAACCAGAGAGGATGCTGGGAACTaGACCCAGGCCCTTTGCACA | + |
|
Preference number: 2 (lower is better) Translates to: HVWCSKRPGEGARSSETREDAGN*TQALCT Trigger: TGTGCAAAGGGCCTGGGTTCAGTTCCCAGCATCCTC...TCTGGTTTCAGAGGATCTGGCACCCTCTCCTGGCCTTTTGGAGCACCAGACATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| 3UTR-3UTR TCA 90 bp | CATGTCTGGTGCTCCAAAAGGCCAGGAGAGGGTGCCAGATCCTCTGAAACCAGAACAGCTCTTTTACACTaGATGACTGTGGACCTGACA | + |
|
Preference number: 2 (lower is better) Translates to: HVWCSKRPGEGARSSETRTALLH*MTVDLT Trigger: TGTCAGGTCCACAGTCATTCAGTGTAAAAGAGCTGT...TCTGGTTTCAGAGGATCTGGCACCCTCTCCTGGCCTTTTGGAGCACCAGACATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| 3UTR-3UTR TCA 90 bp | CATGTCTGGTGCTCCAAAAGGCCAGGAGAGGGTGCCAGATCCTCTGAAACCAGAGTCACACCAAAACATTaGGAAGATTACTCATGGGGC | + |
|
Preference number: 2 (lower is better) Translates to: HVWCSKRPGEGARSSETRVTPKH*EDYSWG Trigger: GCCCCATGAGTAATCTTCTCAATGTTTTGGTGTGAC...TCTGGTTTCAGAGGATCTGGCACCCTCTCCTGGCCTTTTGGAGCACCAGACATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| 3UTR-3UTR TCA 90 bp | GCTCCAAAAGGCCAGGAGAGGGTGCCAGATCCTCTGAAACCAGATGTAGAGGGTGTCACACCAAAACATTaGGAAGATTACTCATGGGGC | + |
|
Preference number: 2 (lower is better) Translates to: APKGQERVPDPLKPDVEGVTPKH*EDYSWG Trigger: GCCCCATGAGTAATCTTCTCAATGTTTTGGTGTGAC...ACCCTCTACATCTGGTTTCAGAGGATCTGGCACCCTCTCCTGGCCTTTTGGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| 3UTR-3UTR CCA 90 bp | GCTCCAAAAGGCCAGGAGAGGGTGCCAGATCCTCTGAAACCAGATGTAGAGGGTCATGTTAAAGAACTCTaGATCTTAACGGTGGACAAT | + |
|
Preference number: 2 (lower is better) Translates to: APKGQERVPDPLKPDVEGHVKEL*ILTVDN Trigger: ATTGTCCACCGTTAAGATCCAGAGTTCTTTAACATG...ACCCTCTACATCTGGTTTCAGAGGATCTGGCACCCTCTCCTGGCCTTTTGGAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| 3UTR-3UTR CCA 90 bp | TCCAAAAGGCCAGGAGAGGGTGCCAGATCCTCTGAAACCAGATGTAGAGGGTTATGGGGCATTAGAATTTaGAGTGGTTTTAGCTTCTTT | + |
|
Preference number: 2 (lower is better) Translates to: SKRPGEGARSSETRCRGLWGIRI*SGFSFF Trigger: AAAGAAGCTAAAACCACTCCAAATTCTAATGCCCCA...TAACCCTCTACATCTGGTTTCAGAGGATCTGGCACCCTCTCCTGGCCTTTTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| 3UTR-3UTR TCA 90 bp | AACGTTTATTTTATGTGCATAAGTGCTTTGCATACTATGAGCATGTCTGGTGCTGGTTATGAGCCGCCATaGGGATGCTGGGAACTGAAC | + |
|
Preference number: 2 (lower is better) Translates to: NVYFMCISALHTMSMSGAGYEPP*GCWELN Trigger: GTTCAGTTCCCAGCATCCTCATGGCGGCTCATAACC...AGCACCAGACATGCTCATAGTATGCAAAGCACTTATGCACATAAAATAAACGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| 3UTR-3UTR CCA 90 bp | CATCTTTATATAATCATAGAAAAAGATGGCGAGGCACAGTCACACCAAAACATTTGGGGCATTAGAATTTaGAGTGGTTTTAGCTTCTTT | + |
|
Preference number: 2 (lower is better) Translates to: HLYIIIEKDGEAQSHQNIWGIRI*SGFSFF Trigger: AAAGAAGCTAAAACCACTCCAAATTCTAATGCCCCA...AATGTTTTGGTGTGACTGTGCCTCGCCATCTTTTTCTATGATTATATAAAGATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| 3UTR TCA 72 bp | GGTGCCAGATCCTCTGAAACCAGATGTAGAGGGTTATaGGCCGCCATGAGGATGCTGGGAACTGAACCCAGG | + |
|
Preference number: 3 (lower is better) Translates to: GARSSETRCRGL*AAMRMLGTEPR Trigger: CCTGGGTTCAGTTCCCAGCATCCTCATGGCGGCTCATAACCCTCTACATCTGGTTTCAGAGGATCTGGCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| 3UTR-3UTR CAA 90 bp | TCCAAAAGGCCAGGAGAGGGTGCCAGATCCTCTGAAACCAGATGTAGAGGGTTACTGAACCCAGGCCCTTaGCACAAGCAGCAAGTGCTC | + |
|
Preference number: 3 (lower is better) Translates to: SKRPGEGARSSETRCRGLLNPGP*HKQQVL Trigger: GAGCACTTGCTGCTTGTGCAAAGGGCCTGGGTTCAG...TAACCCTCTACATCTGGTTTCAGAGGATCTGGCACCCTCTCCTGGCCTTTTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| 3UTR-3UTR CAA 90 bp | TGGGAACTGAACCCAGGCCCTTTGCACAAGCAGCAAGTGCTCCTAGCGCTTCAGAGTCACACCAAAACATaGAGAAGATTACTCATGGGG | + |
|
Preference number: 3 (lower is better) Translates to: WELNPGPLHKQQVLLALQSHTKT*RRLLMG Trigger: CCCCATGAGTAATCTTCTCAATGTTTTGGTGTGACT...CTGAAGCGCTAGGAGCACTTGCTGCTTGTGCAAAGGGCCTGGGTTCAGTTCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| 3UTR GCA 72 bp | GTGCATAAGTGCTTTGCATACTATGAGCATGTCTGGTaGTCCAAAAGGCCAGGAGAGGGTGCCAGATCCTCT | + |
|
Preference number: 3 (lower is better) Translates to: VHKCFAYYEHVW*SKRPGEGARSS Trigger: AGAGGATCTGGCACCCTCTCCTGGCCTTTTGGAGCACCAGACATGCTCATAGTATGCAAAGCACTTATGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| 3UTR CCA 72 bp | TATGTGCATAAGTGCTTTGCATACTATGAGCATGTCTaGTGCTCCAAAAGGCCAGGAGAGGGTGCCAGATCC | + |
|
Preference number: 3 (lower is better) Translates to: YVHKCFAYYEHV*CSKRPGEGARS Trigger: GGATCTGGCACCCTCTCCTGGCCTTTTGGAGCACCAGACATGCTCATAGTATGCAAAGCACTTATGCACATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| CDS-3UTR CCA 90 bp | CATGTCTGGTGCTCCAAAAGGCCAGGAGAGGGTGCCAGATCCTCTGAAACCAGAGTACGAGCTAAGAAGTaGCAGGAATCCAGCAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: HVWCSKRPGEGARSSETRVRAKK*QESSSS Trigger: GCTGCTGCTGGATTCCTGCCACTTCTTAGCTCGTAC...TCTGGTTTCAGAGGATCTGGCACCCTCTCCTGGCCTTTTGGAGCACCAGACATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| CDS-3UTR GCA 90 bp | TGGGAACTGAACCCAGGCCCTTTGCACAAGCAGCAAGTGCTCCTAGCGCTTCAGAACACCTCAGCAAACTaGTCGAACAAGGCTCTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: WELNPGPLHKQQVLLALQNTSAN*SNKALS Trigger: AGAGAGAGCCTTGTTCGAGCAGTTTGCTGAGGTGTT...CTGAAGCGCTAGGAGCACTTGCTGCTTGTGCAAAGGGCCTGGGTTCAGTTCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106097.9 |
||
| CDS-3UTR TCA 90 bp | CAGTCACACCAAAACATTGAGAAGATTACTCATGGGGCATTAGAATTTGGAGTGACGGGGGCCGAGACCTaGAAGAGCTTGGCAGCCCCG | + |
|
Preference number: 4 (lower is better) Translates to: QSHQNIEKITHGALEFGVTGAET*KSLAAP Trigger: CGGGGCTGCCAAGCTCTTTCAGGTCTCGGCCCCCGT...CACTCCAAATTCTAATGCCCCATGAGTAATCTTCTCAATGTTTTGGTGTGACTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000094712.5 |
||
| CDS-3UTR CCA 90 bp | CATGTCTGGTGCTCCAAAAGGCCAGGAGAGGGTGCCAGATCCTCTGAAACCAGAGCCGAACACCTTCAATaGAAACACCTCAGCAAACTG | + |
|
Preference number: 4 (lower is better) Translates to: HVWCSKRPGEGARSSETRAEHLQ*KHLSKL Trigger: CAGTTTGCTGAGGTGTTTCCATTGAAGGTGTTCGGC...TCTGGTTTCAGAGGATCTGGCACCCTCTCCTGGCCTTTTGGAGCACCAGACATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| CDS-3UTR TCA 90 bp | TCCAAAAGGCCAGGAGAGGGTGCCAGATCCTCTGAAACCAGATGTAGAGGGTTATCAAGAGCACGTTACTaGTCTCCTGTAGCACAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: SKRPGEGARSSETRCRGLSRARY*SPVAQV Trigger: CACCTGTGCTACAGGAGATCAGTAACGTGCTCTTGA...TAACCCTCTACATCTGGTTTCAGAGGATCTGGCACCCTCTCCTGGCCTTTTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| CDS-3UTR CCA 90 bp | TCCAAAAGGCCAGGAGAGGGTGCCAGATCCTCTGAAACCAGATGTAGAGGGTTAGCCGAACACCTTCAATaGAAACACCTCAGCAAACTG | + |
|
Preference number: 4 (lower is better) Translates to: SKRPGEGARSSETRCRGLAEHLQ*KHLSKL Trigger: CAGTTTGCTGAGGTGTTTCCATTGAAGGTGTTCGGC...TAACCCTCTACATCTGGTTTCAGAGGATCTGGCACCCTCTCCTGGCCTTTTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| CDS-3UTR GCA 90 bp | CAGTCACACCAAAACATTGAGAAGATTACTCATGGGGCATTAGAATTTGGAGTGAACACCTCAGCAAACTaGTCGAACAAGGCTCTCATC | + |
|
Preference number: 4 (lower is better) Translates to: QSHQNIEKITHGALEFGVNTSAN*SNKALI Trigger: GATGAGAGCCTTGTTCGAGCAGTTTGCTGAGGTGTT...CACTCCAAATTCTAATGCCCCATGAGTAATCTTCTCAATGTTTTGGTGTGACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094712.5 |
||
| CDS-3UTR TCA 90 bp | AACGTTTATTTTATGTGCATAAGTGCTTTGCATACTATGAGCATGTCTGGTGCTTCAAGAGCACGTTACTaGTCTCCTGTAGCACAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: NVYFMCISALHTMSMSGASRARY*SPVAQV Trigger: CACCTGTGCTACAGGAGATCAGTAACGTGCTCTTGA...AGCACCAGACATGCTCATAGTATGCAAAGCACTTATGCACATAAAATAAACGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| CDS-3UTR CCA 90 bp | TATTTTATGTGCATAAGTGCTTTGCATACTATGAGCATGTCTGGTGCTCCAAAAGACGTAAGTACTCAGTaGCTCTTTCAGAACCACCAG | + |
|
Preference number: 4 (lower is better) Translates to: YFMCISALHTMSMSGAPKDVSTQ*LFQNHQ Trigger: CTGGTGGTTCTGAAAGAGCCACTGAGTACTTACGTC...TTTTGGAGCACCAGACATGCTCATAGTATGCAAAGCACTTATGCACATAAAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| CDS-3UTR CCA 90 bp | AAACGTTTATTTTATGTGCATAAGTGCTTTGCATACTATGAGCATGTCTGGTGCGACGTAAGTACTCAGTaGCTCTTTCAGAACCACCAG | + |
|
Preference number: 4 (lower is better) Translates to: KRLFYVHKCFAYYEHVWCDVSTQ*LFQNHQ Trigger: CTGGTGGTTCTGAAAGAGCCACTGAGTACTTACGTC...GCACCAGACATGCTCATAGTATGCAAAGCACTTATGCACATAAAATAAACGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| CDS TCA 90 bp | GTTGTGACACGGGGGCCGAGACCTGAAAGAGCTTGGCAGCCCCGGTaGGCGCGAAGAAGACGCCAAGCAGAACCCGCAACACGCCTACCC | + |
|
Preference number: 5 (lower is better) Translates to: VVTRGPRPERAWQPR*ARRRRQAEPATRLP Trigger: GGGTAGGCGTGTTGCGGGTTCTGCTTGGCGTCTTCTTCGCGCTCACCGGGGCTGCCAAGCTCTTTCAGGTCTCGGCCCCCGTGTCACAAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094712.5 |
||
| CDS TCA 90 bp | TGCTCGAACAAGGCTCTCATCTGTTGTGACACGGGGGCCGAGACCTaGAAGAGCTTGGCAGCCCCGGTGAGCGCGAAGAAGACGCCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: CSNKALICCDTGAET*KSLAAPVSAKKTPS Trigger: GCTTGGCGTCTTCTTCGCGCTCACCGGGGCTGCCAAGCTCTTTCAGGTCTCGGCCCCCGTGTCACAACAGATGAGAGCCTTGTTCGAGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094712.5 |
||
| CDS CCA 90 bp | CAGCAGTTCCAGCCATCCCACAGCTGTCTGGTAGCTTATAGGGTCTaGCTGGTAGCCGAACACCTTCAATGGAAACACCTCAGCAAACTG | + |
|
Preference number: 5 (lower is better) Translates to: QQFQPSHSCLVAYRV*LVAEHLQWKHLSKL Trigger: CAGTTTGCTGAGGTGTTTCCATTGAAGGTGTTCGGCTACCAGCCAGACCCTATAAGCTACCAGACAGCTGTGGGATGGCTGGAACTGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| CDS CCA 90 bp | TGTCTGGTAGCTTATAGGGTCTGGCTGGTAGCCGAACACCTTCAATaGAAACACCTCAGCAAACTGCTCGAACAAGGCTCTCATCTGTTG | + |
|
Preference number: 5 (lower is better) Translates to: CLVAYRVWLVAEHLQ*KHLSKLLEQGSHLL Trigger: CAACAGATGAGAGCCTTGTTCGAGCAGTTTGCTGAGGTGTTTCCATTGAAGGTGTTCGGCTACCAGCCAGACCCTATAAGCTACCAGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094712.5 |
||
| CDS-3UTR CAA 90 bp | CAGTCACACCAAAACATTGAGAAGATTACTCATGGGGCATTAGAATTTGGAGTGGCAGGAGGAATCTTCTaGCTCGGGCATCTGACCGCT | + |
|
Preference number: 5 (lower is better) Translates to: QSHQNIEKITHGALEFGVAGGIF*LGHLTA Trigger: AGCGGTCAGATGCCCGAGCAAGAAGATTCCTCCTGC...CACTCCAAATTCTAATGCCCCATGAGTAATCTTCTCAATGTTTTGGTGTGACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||
| CDS-3UTR CAA 90 bp | CATCTTTATATAATCATAGAAAAAGATGGCGAGGCACAGTCACACCAAAACATTGGTTGGCCTGGTCTCTaGGGGAACTCCGTAAACAAG | + |
|
Preference number: 5 (lower is better) Translates to: HLYIIIEKDGEAQSHQNIGWPGL*GNSVNK Trigger: CTTGTTTACGGAGTTCCCCAAGAGACCAGGCCAACC...AATGTTTTGGTGTGACTGTGCCTCGCCATCTTTTTCTATGATTATATAAAGATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000106097.9 |
||
| CDS TCA 72 bp | CGGGGGCCGAGACCTGAAAGAGCTTGGCAGCCCCGGTaGGCGCGAAGAAGACGCCAAGCAGAACCCGCAACA | + |
|
Preference number: 6 (lower is better) Translates to: RGPRPERAWQPR*ARRRRQAEPAT Trigger: TGTTGCGGGTTCTGCTTGGCGTCTTCTTCGCGCTCACCGGGGCTGCCAAGCTCTTTCAGGTCTCGGCCCCCG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094712.5 |
||
| CDS TCA 72 bp | CTCAGCAAACTGCTCGAACAAGGCTCTCATCTGTTGTaGCACGGGGGCCGAGACCTGAAAGAGCTTGGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: LSKLLEQGSHLL*HGGRDLKELGS Trigger: GCTGCCAAGCTCTTTCAGGTCTCGGCCCCCGTGTCACAACAGATGAGAGCCTTGTTCGAGCAGTTTGCTGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094712.5 |
||
| CDS CCA 72 bp | ACCTCAGCAAACTGCTCGAACAAGGCTCTCTCTAACTaGTGTACTGGGACAAGTGGGTTGGCCTGGTCTCTT | + |
|
Preference number: 6 (lower is better) Translates to: TSANCSNKALSN*CTGTSGLAWSL Trigger: AAGAGACCAGGCCAACCCACTTGTCCCAGTACACCAGTTAGAGAGAGCCTTGTTCGAGCAGTTTGCTGAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106097.9 |
||
| CDS CCA 72 bp | GCTTATAGGGTCTGGCTGGTAGCCGAACACCTTCAATaGAAACACCTCAGCAAACTGCTCGAACAAGGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: AYRVWLVAEHLQ*KHLSKLLEQGS Trigger: AGAGCCTTGTTCGAGCAGTTTGCTGAGGTGTTTCCATTGAAGGTGTTCGGCTACCAGCCAGACCCTATAAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094712.5 ENSMUST00000106097.9 |
||