RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMEM30B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034435

Ensembl transcript IDs: ENSMUST00000042975.7

Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTCCCTGCTCCTCTGTGCCTCTGCGGGCAATCAGCGGGTATCATTTaGCATCCCAACACTTCCCCGCCCCATCTGATATCTCCCTCCCAG +
Preference number: 1 (lower is better)
Translates to: FPAPLCLCGQSAGII*HPNTSPPHLISPSQ
Trigger: CTGGGAGGGAGATATCAGATGGGGCGGGGAAGTGTTGGGATGGCAAATGATACCCGCTGATTGCCCGCAGAGGCACAGAGGAGCAGGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR GCA 90 bp CGGTCCCTCAGGGTTGCAAGGAAACTGCTTCCCACTAAGATCATTTaGAGTCGGGTTTCTCAGGTTAAAACACTTGCCCCTGAGCCATGC +
Preference number: 1 (lower is better)
Translates to: RSLRVARKLLPTKII*SRVSQVKTLAPEPC
Trigger: GCATGGCTCAGGGGCAAGTGTTTTAACCTGAGAAACCCGACTGCAAATGATCTTAGTGGGAAGCAGTTTCCTTGCAACCCTGAGGGACCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR GCA 90 bp GACTTAAATCTTAACCAATATGCTTTCCCTGCTCCTCTGTGCCTCTaGGGGCAATCAGCGGGTATCATTTGCCATCCCAACACTTCCCCG +
Preference number: 1 (lower is better)
Translates to: DLNLNQYAFPAPLCL*GQSAGIICHPNTSP
Trigger: CGGGGAAGTGTTGGGATGGCAAATGATACCCGCTGATTGCCCGCAGAGGCACAGAGGAGCAGGGAAAGCATATTGGTTAAGATTTAAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR CCA 90 bp AATCTTAAGGACCTGGCGTGTCAAGTCGGTAAGCCATGGAGAAGATaGGGAAAATGGCAAGATGTGTCACTCTGCAGTCCAGAACCTGAG +
Preference number: 1 (lower is better)
Translates to: NLKDLACQVGKPWRR*GKWQDVSLCSPEPE
Trigger: CTCAGGTTCTGGACTGCAGAGTGACACATCTTGCCATTTTCCCCATCTTCTCCATGGCTTACCGACTTGACACGCCAGGTCCTTAAGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR CCA 90 bp CAATCCAGGAATCTTAAGGACCTGGCGTGTCAAGTCGGTAAGCCATaGAGAAGATGGGGAAAATGGCAAGATGTGTCACTCTGCAGTCCA +
Preference number: 1 (lower is better)
Translates to: QSRNLKDLACQVGKP*RRWGKWQDVSLCSP
Trigger: TGGACTGCAGAGTGACACATCTTGCCATTTTCCCCATCTTCTCCATGGCTTACCGACTTGACACGCCAGGTCCTTAAGATTCCTGGATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR GCA 90 bp GTCATCGACTTAAATCTTAACCAATATGCTTTCCCTGCTCCTCTGTaGCTCTGCGGGCAATCAGCGGGTATCATTTGCCATCCCAACACT +
Preference number: 1 (lower is better)
Translates to: VIDLNLNQYAFPAPL*LCGQSAGIICHPNT
Trigger: AGTGTTGGGATGGCAAATGATACCCGCTGATTGCCCGCAGAGGCACAGAGGAGCAGGGAAAGCATATTGGTTAAGATTTAAGTCGATGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR CCA 90 bp ACAAATGAGTTAAATTATTCCCTTCAGCATGATTCAAGGTGGGGGTaGGGTGTTGAGAAAGAAGGCAAAACTCGGTCCCTCAGGGTTGCA +
Preference number: 1 (lower is better)
Translates to: TNELNYSLQHDSRWG*GVEKEGKTRSLRVA
Trigger: TGCAACCCTGAGGGACCGAGTTTTGCCTTCTTTCTCAACACCCCACCCCCACCTTGAATCATGCTGAAGGGAATAATTTAACTCATTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR CCA 90 bp GTGCCTAGAGGAAGGAACAAAAGTTTAGGCTCAAAATCGGGATCCTaGCTGTTGGTCTTAATGAGTTCCAATCCAGGAATCTTAAGGACC +
Preference number: 1 (lower is better)
Translates to: VPRGRNKSLGSKSGS*LLVLMSSNPGILRT
Trigger: GGTCCTTAAGATTCCTGGATTGGAACTCATTAAGACCAACAGCCAGGATCCCGATTTTGAGCCTAAACTTTTGTTCCTTCCTCTAGGCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR GCA 90 bp TGCACTTTCCTAGACCTAGCAAGTTTTCTTGCTCATTCCACAAATTaGCAGCTTCCTTCCTATGTGTTTAGGACCAAACAGGAGCACTAT +
Preference number: 1 (lower is better)
Translates to: CTFLDLASFLAHSTN*QLPSYVFRTKQEHY
Trigger: ATAGTGCTCCTGTTTGGTCCTAAACACATAGGAAGGAAGCTGGCAATTTGTGGAATGAGCAAGAAAACTTGCTAGGTCTAGGAAAGTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR CAA 90 bp TTTCCCTGCTCCTCTGTGCCTCTGCGGGCAATCAGCGGGTATCATTaGCCATCCCAACACTTCCCCGCCCCATCTGATATCTCCCTCCCA +
Preference number: 2 (lower is better)
Translates to: FPCSSVPLRAISGYH*PSQHFPAPSDISLP
Trigger: TGGGAGGGAGATATCAGATGGGGCGGGGAAGTGTTGGGATGGCAAATGATACCCGCTGATTGCCCGCAGAGGCACAGAGGAGCAGGGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR-3UTR GCA 90 bp TGCCTCTGCGGGCAATCAGCGGGTATCATTTGCCATCCCAACACTTCCCCGCCCAAGCGGAGGGAGGTGTaGCTAGAGGAAGGAACAAAA +
Preference number: 2 (lower is better)
Translates to: CLCGQSAGIICHPNTSPPKRREV*LEEGTK
Trigger: TTTTGTTCCTTCCTCTAGGCACACCTCCCTCCGCTT...GGGCGGGGAAGTGTTGGGATGGCAAATGATACCCGCTGATTGCCCGCAGAGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR-3UTR CCA 90 bp ACCTGGCGTGTCAAGTCGGTAAGCCATGGAGAAGATGGGGAAAATGGCAAGATGCCGCTAAAAGCGGCTTaGCCAAGAAGCAGGCAGGGT +
Preference number: 2 (lower is better)
Translates to: TWRVKSVSHGEDGENGKMPLKAA*PRSRQG
Trigger: ACCCTGCCTGCTTCTTGGCCAAGCCGCTTTTAGCGG...CATCTTGCCATTTTCCCCATCTTCTCCATGGCTTACCGACTTGACACGCCAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR-3UTR GCA 90 bp CTTTTTATCTTAGACGGGCACGCTATTCATCCAAAAATAAGTATTAACCAAGACTCGGTCCCTCAGGGTTaGAAGGAAACTGCTTCCCAC +
Preference number: 2 (lower is better)
Translates to: LFILDGHAIHPKISINQDSVPQG*KETASH
Trigger: GTGGGAAGCAGTTTCCTTGCAACCCTGAGGGACCGA...GTCTTGGTTAATACTTATTTTTGGATGAATAGCGTGCCCGTCTAAGATAAAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR CAA 90 bp CAGCATTTGACCGCCATACAACATACTCCAACAACTCTGCTGCCCTaGAGGAATGAAAATTCACTGATAACCAAGAAAATGACTGCACTA +
Preference number: 2 (lower is better)
Translates to: QHLTAIQHTPTTLLP*RNENSLITKKMTAL
Trigger: TAGTGCAGTCATTTTCTTGGTTATCAGTGAATTTTCATTCCTCAAGGGCAGCAGAGTTGTTGGAGTATGTTGTATGGCGGTCAAATGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR-3UTR CCA 90 bp GATCTGCACTTTCCTAGACCTAGCAAGTTTTCTTGCTCATTCCACAAATTGCCATCAAAATCGGGATCCTaGCTGTTGGTCTTAATGAGT +
Preference number: 2 (lower is better)
Translates to: DLHFPRPSKFSCSFHKLPSKSGS*LLVLMS
Trigger: ACTCATTAAGACCAACAGCCAGGATCCCGATTTTGA...TGGCAATTTGTGGAATGAGCAAGAAAACTTGCTAGGTCTAGGAAAGTGCAGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR-3UTR GCA 90 bp AGACAGAATAATAGAATGGATGGAAAGAATCACTGTAACTCAGCATTTGACCGCTTAATGACGCACTTCTaGCCTGCAGATCTGCACTTT +
Preference number: 2 (lower is better)
Translates to: RQNNRMDGKNHCNSAFDRLMTHF*PADLHF
Trigger: AAAGTGCAGATCTGCAGGGCAGAAGTGCGTCATTAA...GCGGTCAAATGCTGAGTTACAGTGATTCTTTCCATCCATTCTATTATTCTGTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR-3UTR CCA 90 bp AGACAGAATAATAGAATGGATGGAAAGAATCACTGTAACTCAGCATTTGACCGCAAGCCATGGAGAAGATaGGGAAAATGGCAAGATGTG +
Preference number: 2 (lower is better)
Translates to: RQNNRMDGKNHCNSAFDRKPWRR*GKWQDV
Trigger: CACATCTTGCCATTTTCCCCATCTTCTCCATGGCTT...GCGGTCAAATGCTGAGTTACAGTGATTCTTTCCATCCATTCTATTATTCTGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR-3UTR GCA 90 bp TTCTCTTTCAAAAACCTTGAAAACAAGGCCTGGAACTACAATTTAATGACAGGACAAGATGTGTCACTCTaGAGTCCAGAACCTGAGAAC +
Preference number: 2 (lower is better)
Translates to: FSFKNLENKAWNYNLMTGQDVSL*SPEPEN
Trigger: GTTCTCAGGTTCTGGACTGCAGAGTGACACATCTTG...TCCTGTCATTAAATTGTAGTTCCAGGCCTTGTTTTCAAGGTTTTTGAAAGAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR-3UTR GCA 90 bp CTTTTTATCTTAGACGGGCACGCTATTCATCCAAAAATAAGTATTAACCAAGACCCCACTAAGATCATTTaGAGTCGGGTTTCTCAGGTT +
Preference number: 2 (lower is better)
Translates to: LFILDGHAIHPKISINQDPTKII*SRVSQV
Trigger: AACCTGAGAAACCCGACTGCAAATGATCTTAGTGGG...GTCTTGGTTAATACTTATTTTTGGATGAATAGCGTGCCCGTCTAAGATAAAAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR-3UTR CCA 90 bp CTTTTTATCTTAGACGGGCACGCTATTCATCCAAAAATAAGTATTAACCAAGACAGAAGATGGGGAAAATaGCAAGATGTGTCACTCTGC +
Preference number: 2 (lower is better)
Translates to: LFILDGHAIHPKISINQDRRWGK*QDVSLC
Trigger: GCAGAGTGACACATCTTGCCATTTTCCCCATCTTCT...GTCTTGGTTAATACTTATTTTTGGATGAATAGCGTGCCCGTCTAAGATAAAAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR-3UTR CCA 90 bp CTTTTTATCTTAGACGGGCACGCTATTCATCCAAAAATAAGTATTAACCAAGACTTTCTTCAGGGAACCTaGAAGACAGCATCATGGGAA +
Preference number: 2 (lower is better)
Translates to: LFILDGHAIHPKISINQDFLQGT*KTASWE
Trigger: TTCCCATGATGCTGTCTTCCAGGTTCCCTGAAGAAA...GTCTTGGTTAATACTTATTTTTGGATGAATAGCGTGCCCGTCTAAGATAAAAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR-3UTR GCA 90 bp TTCTCTTTCAAAAACCTTGAAAACAAGGCCTGGAACTACAATTTAATGACAGGACATGCAGACTGCTCTTaGGTTTTCAGATTTTTACAC +
Preference number: 2 (lower is better)
Translates to: FSFKNLENKAWNYNLMTGHADCS*VFRFLH
Trigger: GTGTAAAAATCTGAAAACGCAAGAGCAGTCTGCATG...TCCTGTCATTAAATTGTAGTTCCAGGCCTTGTTTTCAAGGTTTTTGAAAGAGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR TCA 72 bp GTATCATTTGCCATCCCAACACTTCCCCGCCCCATCTaGTATCTCCCTCCCAGAAAGCGGAGGGAGGTGTGC +
Preference number: 3 (lower is better)
Translates to: VSFAIPTLPRPI*YLPPRKRREVC
Trigger: GCACACCTCCCTCCGCTTTCTGGGAGGGAGATATCAGATGGGGCGGGGAAGTGTTGGGATGGCAAATGATAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR GCA 72 bp CCTCTGTGCCTCTGCGGGCAATCAGCGGGTATCATTTaGCATCCCAACACTTCCCCGCCCCATCTGATATCT +
Preference number: 3 (lower is better)
Translates to: PLCLCGQSAGII*HPNTSPPHLIS
Trigger: AGATATCAGATGGGGCGGGGAAGTGTTGGGATGGCAAATGATACCCGCTGATTGCCCGCAGAGGCACAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR-3UTR CAA 90 bp ACCTGGCGTGTCAAGTCGGTAAGCCATGGAGAAGATGGGGAAAATGGCAAGATGACCGCTAAAAGCGGCTaGGCCAAGAAGCAGGCAGGG +
Preference number: 3 (lower is better)
Translates to: TWRVKSVSHGEDGENGKMTAKSG*AKKQAG
Trigger: CCCTGCCTGCTTCTTGGCCAAGCCGCTTTTAGCGGT...CATCTTGCCATTTTCCCCATCTTCTCCATGGCTTACCGACTTGACACGCCAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR GCA 72 bp TGGAGAAGATGGGGAAAATGGCAAGATGTGTCACTCTaGAGTCCAGAACCTGAGAACAGTCCCGTGGCGGGT +
Preference number: 3 (lower is better)
Translates to: WRRWGKWQDVSL*SPEPENSPVAG
Trigger: ACCCGCCACGGGACTGTTCTCAGGTTCTGGACTGCAGAGTGACACATCTTGCCATTTTCCCCATCTTCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR TCA 72 bp GAAGCTTGCTCATCCTGGCCTTACTGTGTCAGAACCTaGGGGGCCTGGTGCCTCGTCATCGACTTAAATCTT +
Preference number: 3 (lower is better)
Translates to: EACSSWPYCVRT*GAWCLVIDLNL
Trigger: AAGATTTAAGTCGATGACGAGGCACCAGGCCCCTCAGGTTCTGACACAGTAAGGCCAGGATGAGCAAGCTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR GCA 72 bp CTTAACCAATATGCTTTCCCTGCTCCTCTGTGCCTCTaGGGGCAATCAGCGGGTATCATTTGCCATCCCAAC +
Preference number: 3 (lower is better)
Translates to: LNQYAFPAPLCL*GQSAGIICHPN
Trigger: GTTGGGATGGCAAATGATACCCGCTGATTGCCCGCAGAGGCACAGAGGAGCAGGGAAAGCATATTGGTTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR CCA 72 bp GACCTGGCGTGTCAAGTCGGTAAGCCATGGAGAAGATaGGGAAAATGGCAAGATGTGTCACTCTGCAGTCCA +
Preference number: 3 (lower is better)
Translates to: DLACQVGKPWRR*GKWQDVSLCSP
Trigger: TGGACTGCAGAGTGACACATCTTGCCATTTTCCCCATCTTCTCCATGGCTTACCGACTTGACACGCCAGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR CCA 72 bp AATCTTAAGGACCTGGCGTGTCAAGTCGGTAAGCCATaGAGAAGATGGGGAAAATGGCAAGATGTGTCACTC +
Preference number: 3 (lower is better)
Translates to: NLKDLACQVGKP*RRWGKWQDVSL
Trigger: GAGTGACACATCTTGCCATTTTCCCCATCTTCTCCATGGCTTACCGACTTGACACGCCAGGTCCTTAAGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR GCA 72 bp AGGGTTGCAAGGAAACTGCTTCCCACTAAGATCATTTaGAGTCGGGTTTCTCAGGTTAAAACACTTGCCCCT +
Preference number: 3 (lower is better)
Translates to: RVARKLLPTKII*SRVSQVKTLAP
Trigger: AGGGGCAAGTGTTTTAACCTGAGAAACCCGACTGCAAATGATCTTAGTGGGAAGCAGTTTCCTTGCAACCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR CCA 72 bp TTAAATTATTCCCTTCAGCATGATTCAAGGTGGGGGTaGGGTGTTGAGAAAGAAGGCAAAACTCGGTCCCTC +
Preference number: 3 (lower is better)
Translates to: LNYSLQHDSRWG*GVEKEGKTRSL
Trigger: GAGGGACCGAGTTTTGCCTTCTTTCTCAACACCCCACCCCCACCTTGAATCATGCTGAAGGGAATAATTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR-3UTR CAA 90 bp AGACAGAATAATAGAATGGATGGAAAGAATCACTGTAACTCAGCATTTGACCGCGGATTCCAGAGAAGCTaGCTCATCCTGGCCTTACTG +
Preference number: 3 (lower is better)
Translates to: RQNNRMDGKNHCNSAFDRGFQRS*LILALL
Trigger: CAGTAAGGCCAGGATGAGCAAGCTTCTCTGGAATCC...GCGGTCAAATGCTGAGTTACAGTGATTCTTTCCATCCATTCTATTATTCTGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR-3UTR CAA 90 bp TTCTCTTTCAAAAACCTTGAAAACAAGGCCTGGAACTACAATTTAATGACAGGACTCGGTCCCTCAGGGTaGCAAGGAAACTGCTTCCCA +
Preference number: 3 (lower is better)
Translates to: FSFKNLENKAWNYNLMTGLGPSG*QGNCFP
Trigger: TGGGAAGCAGTTTCCTTGCAACCCTGAGGGACCGAG...TCCTGTCATTAAATTGTAGTTCCAGGCCTTGTTTTCAAGGTTTTTGAAAGAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR CCA 72 bp GGAAGGAACAAAAGTTTAGGCTCAAAATCGGGATCCTaGCTGTTGGTCTTAATGAGTTCCAATCCAGGAATC +
Preference number: 3 (lower is better)
Translates to: GRNKSLGSKSGS*LLVLMSSNPGI
Trigger: GATTCCTGGATTGGAACTCATTAAGACCAACAGCCAGGATCCCGATTTTGAGCCTAAACTTTTGTTCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR GCA 72 bp TTCTTAAGTTTGCTTTTACATTTAATGACGCACTTCTaGCCTGCAGATCTGCACTTTCCTAGACCTAGCAAG +
Preference number: 3 (lower is better)
Translates to: FLSLLLHLMTHF*PADLHFPRPSK
Trigger: CTTGCTAGGTCTAGGAAAGTGCAGATCTGCAGGGCAGAAGTGCGTCATTAAATGTAAAAGCAAACTTAAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR-3UTR CAA 90 bp TTCTCTTTCAAAAACCTTGAAAACAAGGCCTGGAACTACAATTTAATGACAGGAATAAAAATGTCCCACTaGCCTCTGAGACTAGCTTTG +
Preference number: 3 (lower is better)
Translates to: FSFKNLENKAWNYNLMTGIKMSH*PLRLAL
Trigger: CAAAGCTAGTCTCAGAGGCAAGTGGGACATTTTTAT...TCCTGTCATTAAATTGTAGTTCCAGGCCTTGTTTTCAAGGTTTTTGAAAGAGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR GCA 90 bp TGCCTCTGCGGGCAATCAGCGGGTATCATTTGCCATCCCAACACTTCCCCGCCCGCCAGGCCGCTGAGCTaGGCGTCGTCGCGGGACACG +
Preference number: 4 (lower is better)
Translates to: CLCGQSAGIICHPNTSPPARPLS*ASSRDT
Trigger: CGTGTCCCGCGACGACGCGCAGCTCAGCGGCCTGGC...GGGCGGGGAAGTGTTGGGATGGCAAATGATACCCGCTGATTGCCCGCAGAGGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR GCA 90 bp TGCCTCTGCGGGCAATCAGCGGGTATCATTTGCCATCCCAACACTTCCCCGCCCGAGGGCTGGCGCTGGTaGCAGAGCGAGAAGGAGTCG +
Preference number: 4 (lower is better)
Translates to: CLCGQSAGIICHPNTSPPEGWRW*QSEKES
Trigger: CGACTCCTTCTCGCTCTGGCACCAGCGCCAGCCCTC...GGGCGGGGAAGTGTTGGGATGGCAAATGATACCCGCTGATTGCCCGCAGAGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR GCA 90 bp GTTGTGTTAGGAACAAAGGCCACCGCTAAAAGCGGCTTGGCCAAGAAGCAGGCAAGGCCAGCGCCAGGCTaGCGTTCACCAGCGGCGGGT +
Preference number: 4 (lower is better)
Translates to: VVLGTKATAKSGLAKKQARPAPG*RSPAAG
Trigger: ACCCGCCGCTGGTGAACGGCAGCCTGGCGCTGGCCT...TGCCTGCTTCTTGGCCAAGCCGCTTTTAGCGGTGGCCTTTGTTCCTAACACAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR CCA 90 bp GGGGAAAATGGCAAGATGTGTCACTCTGCAGTCCAGAACCTGAGAACAGTCCCGCGCGGCCCTGGCCCTTaGCGGCGCACACCGAGCAAT +
Preference number: 4 (lower is better)
Translates to: GENGKMCHSAVQNLRTVPRGPGP*RRTPSN
Trigger: ATTGCTCGGTGTGCGCCGCCAAGGGCCAGGGCCGCG...CGGGACTGTTCTCAGGTTCTGGACTGCAGAGTGACACATCTTGCCATTTTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR CCA 90 bp GGGGAAAATGGCAAGATGTGTCACTCTGCAGTCCAGAACCTGAGAACAGTCCCGAAGGGGTCCGAGGGCTaGCGCTGGTGCCAGAGCGAG +
Preference number: 4 (lower is better)
Translates to: GENGKMCHSAVQNLRTVPKGSEG*RWCQSE
Trigger: CTCGCTCTGGCACCAGCGCCAGCCCTCGGACCCCTT...CGGGACTGTTCTCAGGTTCTGGACTGCAGAGTGACACATCTTGCCATTTTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR TCA 90 bp GGGGAAAATGGCAAGATGTGTCACTCTGCAGTCCAGAACCTGAGAACAGTCCCGGGAGGCGCTGCTGAGTaGAGGCGGTGTTGTCGGGCT +
Preference number: 4 (lower is better)
Translates to: GENGKMCHSAVQNLRTVPGGAAE*RRCCRA
Trigger: AGCCCGACAACACCGCCTTCACTCAGCAGCGCCTCC...CGGGACTGTTCTCAGGTTCTGGACTGCAGAGTGACACATCTTGCCATTTTCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR CCA 90 bp GTTGTGTTAGGAACAAAGGCCACCGCTAAAAGCGGCTTGGCCAAGAAGCAGGCATCCGAGGGCTGGCGCTaGTGCCAGAGCGAGAAGGAG +
Preference number: 4 (lower is better)
Translates to: VVLGTKATAKSGLAKKQASEGWR*CQSEKE
Trigger: CTCCTTCTCGCTCTGGCACCAGCGCCAGCCCTCGGA...TGCCTGCTTCTTGGCCAAGCCGCTTTTAGCGGTGGCCTTTGTTCCTAACACAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR CCA 90 bp ACCTGGCGTGTCAAGTCGGTAAGCCATGGAGAAGATGGGGAAAATGGCAAGATGCGGTCCACCAGGCGATaGCGGTGCGATCGAGCGGCA +
Preference number: 4 (lower is better)
Translates to: TWRVKSVSHGEDGENGKMRSTRR*RCDRAA
Trigger: TGCCGCTCGATCGCACCGCCATCGCCTGGTGGACCG...CATCTTGCCATTTTCCCCATCTTCTCCATGGCTTACCGACTTGACACGCCAGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR TCA 90 bp GTTGTGTTAGGAACAAAGGCCACCGCTAAAAGCGGCTTGGCCAAGAAGCAGGCAGCGGGTTGCGGAACTTaGCGTGGTAGTCGGTCCACC +
Preference number: 4 (lower is better)
Translates to: VVLGTKATAKSGLAKKQAAGCGT*RGSRST
Trigger: GGTGGACCGACTACCACGTCAAGTTCCGCAACCCGC...TGCCTGCTTCTTGGCCAAGCCGCTTTTAGCGGTGGCCTTTGTTCCTAACACAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR GCA 90 bp TGCCTCTGCGGGCAATCAGCGGGTATCATTTGCCATCCCAACACTTCCCCGCCCCCAGGAAAGGGTTCTTaGCACCCATCCAAGAGATGT +
Preference number: 4 (lower is better)
Translates to: CLCGQSAGIICHPNTSPPPGKGS*HPSKRC
Trigger: ACATCTCTTGGATGGGTGGCAAGAACCCTTTCCTGG...GGGCGGGGAAGTGTTGGGATGGCAAATGATACCCGCTGATTGCCCGCAGAGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR CAA 72 bp TCCTCTGTGCCTCTGCGGGCAATCAGCGGGTATCATTaGCCATCCCAACACTTCCCCGCCCCATCTGATATC +
Preference number: 4 (lower is better)
Translates to: SSVPLRAISGYH*PSQHFPAPSDI
Trigger: GATATCAGATGGGGCGGGGAAGTGTTGGGATGGCAAATGATACCCGCTGATTGCCCGCAGAGGCACAGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR GCA 90 bp AGACAGAATAATAGAATGGATGGAAAGAATCACTGTAACTCAGCATTTGACCGCAGAGCGGCAGCGCGATaGCCGCCGACAGCAGCGGCT +
Preference number: 4 (lower is better)
Translates to: RQNNRMDGKNHCNSAFDRRAAAR*PPTAAA
Trigger: AGCCGCTGCTGTCGGCGGGCATCGCGCTGCCGCTCT...GCGGTCAAATGCTGAGTTACAGTGATTCTTTCCATCCATTCTATTATTCTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR GCA 90 bp GATCTGCACTTTCCTAGACCTAGCAAGTTTTCTTGCTCATTCCACAAATTGCCACGCCGGTGCCGGGGTTaGCGGTGTAGTCGTACTCCA +
Preference number: 4 (lower is better)
Translates to: DLHFPRPSKFSCSFHKLPRRCRG*RCSRTP
Trigger: TGGAGTACGACTACACCGGCAACCCCGGCACCGGCG...TGGCAATTTGTGGAATGAGCAAGAAAACTTGCTAGGTCTAGGAAAGTGCAGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR GCA 90 bp GATCTGCACTTTCCTAGACCTAGCAAGTTTTCTTGCTCATTCCACAAATTGCCAACCAGGCGATGGCGGTaGGATCGAGCGGCACCTCGA +
Preference number: 4 (lower is better)
Translates to: DLHFPRPSKFSCSFHKLPTRRWR*DRAAPR
Trigger: TCGAGGTGCCGCTCGATCGCACCGCCATCGCCTGGT...TGGCAATTTGTGGAATGAGCAAGAAAACTTGCTAGGTCTAGGAAAGTGCAGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR GCA 90 bp GATCTGCACTTTCCTAGACCTAGCAAGTTTTCTTGCTCATTCCACAAATTGCCATGCGCGCATAGAGCTTaGGGAACGTGGGCAGCGCCG +
Preference number: 4 (lower is better)
Translates to: DLHFPRPSKFSCSFHKLPCAHRA*GTWAAP
Trigger: CGGCGCTGCCCACGTTCCGCAAGCTCTATGCGCGCA...TGGCAATTTGTGGAATGAGCAAGAAAACTTGCTAGGTCTAGGAAAGTGCAGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR CCA 90 bp AGACAGAATAATAGAATGGATGGAAAGAATCACTGTAACTCAGCATTTGACCGCAGAGCTTGCGGAACGTaGGCAGCGCCGCGGTGCGCA +
Preference number: 4 (lower is better)
Translates to: RQNNRMDGKNHCNSAFDRRACGT*AAPRCA
Trigger: TGCGCACCGCGGCGCTGCCCACGTTCCGCAAGCTCT...GCGGTCAAATGCTGAGTTACAGTGATTCTTTCCATCCATTCTATTATTCTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR GCA 90 bp GATCTGCACTTTCCTAGACCTAGCAAGTTTTCTTGCTCATTCCACAAATTGCCAAGTTGCCCTGGCGGATaGGCGCATAGAGCTTGCGGA +
Preference number: 4 (lower is better)
Translates to: DLHFPRPSKFSCSFHKLPSCPGG*AHRACG
Trigger: TCCGCAAGCTCTATGCGCGCATCCGCCAGGGCAACT...TGGCAATTTGTGGAATGAGCAAGAAAACTTGCTAGGTCTAGGAAAGTGCAGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR GCA 90 bp GATCTGCACTTTCCTAGACCTAGCAAGTTTTCTTGCTCATTCCACAAATTGCCACGACCAGGTAGGCGATaGCCAGGAAAGGGTTCTTGC +
Preference number: 4 (lower is better)
Translates to: DLHFPRPSKFSCSFHKLPRPGRR*PGKGSC
Trigger: GCAAGAACCCTTTCCTGGGCATCGCCTACCTGGTCG...TGGCAATTTGTGGAATGAGCAAGAAAACTTGCTAGGTCTAGGAAAGTGCAGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR GCA 90 bp TTCTCTTTCAAAAACCTTGAAAACAAGGCCTGGAACTACAATTTAATGACAGGAGACCGGCGGAGTAGTTaGCCTGGCGGATGCGCGCAT +
Preference number: 4 (lower is better)
Translates to: FSFKNLENKAWNYNLMTGDRRSS*PGGCAH
Trigger: ATGCGCGCATCCGCCAGGGCAACTACTCCGCCGGTC...TCCTGTCATTAAATTGTAGTTCCAGGCCTTGTTTTCAAGGTTTTTGAAAGAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
3UTR CAA 72 bp ATAGAATGGATGGAAAGAATCACTGTAACTCAGCATTaGACCGCCATACAACATACTCCAACAACTCTGCTG +
Preference number: 4 (lower is better)
Translates to: IEWMERITVTQH*TAIQHTPTTLL
Trigger: CAGCAGAGTTGTTGGAGTATGTTGTATGGCGGTCAAATGCTGAGTTACAGTGATTCTTTCCATCCATTCTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS TCA 90 bp TGCCCGCCGACAGCAGCGGCTGCCAGGCGGGGAGGCGCTGCTGAGTaGAGGCGGTGTTGTCGGGCTGGTGCGCGCCCCGCGCCGTGGCGC +
Preference number: 5 (lower is better)
Translates to: CPPTAAAARRGGAAE*RRCCRAGARPAPWR
Trigger: GCGCCACGGCGCGGGGCGCGCACCAGCCCGACAACACCGCCTTCACTCAGCAGCGCCTCCCCGCCTGGCAGCCGCTGCTGTCGGCGGGCA
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS TCA 90 bp GCGATGCCCGCCGACAGCAGCGGCTGCCAGGCGGGGAGGCGCTGCTaGGTGAAGGCGGTGTTGTCGGGCTGGTGCGCGCCCCGCGCCGTG +
Preference number: 5 (lower is better)
Translates to: AMPADSSGCQAGRRC*VKAVLSGWCAPRAV
Trigger: CACGGCGCGGGGCGCGCACCAGCCCGACAACACCGCCTTCACTCAGCAGCGCCTCCCCGCCTGGCAGCCGCTGCTGTCGGCGGGCATCGC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR CAA 90 bp TGCCTCTGCGGGCAATCAGCGGGTATCATTTGCCATCCCAACACTTCCCCGCCCCTAAGAATGATGAGCTaGTGGCCGCCGAAGGCGCGC +
Preference number: 5 (lower is better)
Translates to: CLCGQSAGIICHPNTSPPLRMMS*WPPKAR
Trigger: GCGCGCCTTCGGCGGCCACAAGCTCATCATTCTTAG...GGGCGGGGAAGTGTTGGGATGGCAAATGATACCCGCTGATTGCCCGCAGAGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR CAA 90 bp AGACAGAATAATAGAATGGATGGAAAGAATCACTGTAACTCAGCATTTGACCGCGCGCGGCCCTGGCCCTaGGCGGCGCACACCGAGCAA +
Preference number: 5 (lower is better)
Translates to: RQNNRMDGKNHCNSAFDRARPWP*AAHTEQ
Trigger: TTGCTCGGTGTGCGCCGCCAAGGGCCAGGGCCGCGC...GCGGTCAAATGCTGAGTTACAGTGATTCTTTCCATCCATTCTATTATTCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR CAA 90 bp GATCTGCACTTTCCTAGACCTAGCAAGTTTTCTTGCTCATTCCACAAATTGCCATCGTTGAAGAGGCTGTaGGCGATGGCGCCGCACGGT +
Preference number: 5 (lower is better)
Translates to: DLHFPRPSKFSCSFHKLPSLKRL*AMAPHG
Trigger: ACCGTGCGGCGCCATCGCCAACAGCCTCTTCAACGA...TGGCAATTTGTGGAATGAGCAAGAAAACTTGCTAGGTCTAGGAAAGTGCAGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR CAA 90 bp GATCTGCACTTTCCTAGACCTAGCAAGTTTTCTTGCTCATTCCACAAATTGCCAATGAAGCCGGTGTTGTaGGGATCCGGGCTGAGCTCA +
Preference number: 5 (lower is better)
Translates to: DLHFPRPSKFSCSFHKLPMKPVL*GSGLSS
Trigger: TGAGCTCAGCCCGGATCCCAACAACACCGGCTTCAT...TGGCAATTTGTGGAATGAGCAAGAAAACTTGCTAGGTCTAGGAAAGTGCAGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS-3UTR CAA 90 bp AGACAGAATAATAGAATGGATGGAAAGAATCACTGTAACTCAGCATTTGACCGCCCCATCCAAGAGATGTaGCTAAGAATGATGAGCTTG +
Preference number: 5 (lower is better)
Translates to: RQNNRMDGKNHCNSAFDRPIQEM*LRMMSL
Trigger: CAAGCTCATCATTCTTAGCAACATCTCTTGGATGGG...GCGGTCAAATGCTGAGTTACAGTGATTCTTTCCATCCATTCTATTATTCTGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS TCA 72 bp CGTTGGCCGGGTGGCGCAGCGCGCTGGCCAGGCCGCTaGGCTGCGCGTCGTCGCGGGACACGCCGTAGCGCC +
Preference number: 6 (lower is better)
Translates to: RWPGGAARWPGR*AARRRGTRRSA
Trigger: GGCGCTACGGCGTGTCCCGCGACGACGCGCAGCTCAGCGGCCTGGCCAGCGCGCTGCGCCACCCGGCCAACG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS CCA 72 bp CAGGAGCAAGCGCAGCCGGGCGGCGGAGCGCGGCCCTaGCCCTTGGCGGCGCACACCGAGCAATCGCCGGTG +
Preference number: 6 (lower is better)
Translates to: QEQAQPGGGARP*PLAAHTEQSPV
Trigger: CACCGGCGATTGCTCGGTGTGCGCCGCCAAGGGCCAGGGCCGCGCTCCGCCGCCCGGCTGCGCTTGCTCCTG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS TCA 72 bp ACAGCAGCGGCTGCCAGGCGGGGAGGCGCTGCTGAGTaGAGGCGGTGTTGTCGGGCTGGTGCGCGCCCCGCG +
Preference number: 6 (lower is better)
Translates to: TAAAARRGGAAE*RRCCRAGARPA
Trigger: CGCGGGGCGCGCACCAGCCCGACAACACCGCCTTCACTCAGCAGCGCCTCCCCGCCTGGCAGCCGCTGCTGT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7
CDS TCA 72 bp CGTTGGAGGAGTAGAAGAGGCCCAGGCCCAGGCCGATaGACGCCAGGCCGGCGCAGAAGAAGAGCGGCAGCG +
Preference number: 6 (lower is better)
Translates to: RWRSRRGPGPGR*TPGRRRRRAAA
Trigger: CGCTGCCGCTCTTCTTCTGCGCCGGCCTGGCGTTCATCGGCCTGGGCCTGGGCCTCTTCTACTCCTCCAACG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042975.7