RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMEM260 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036339

Ensembl transcript IDs: ENSMUST00000111735.10, ENSMUST00000124720.8, ENSMUST00000153765.8, ENSMUST00000226400.2, ENSMUST00000226422.2, ENSMUST00000227440.2, ENSMUST00000228697.2

Found 406 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACCCTCGCAGTGTCGTCTGGTCTCCCCAGGTCCAGCGGGCGCGACTaGGGTAGGACGAGACAGGCAGGTAGACATAGGGCAGCAGGCCAG +
Preference number: 1 (lower is better)
Translates to: TLAVSSGLPRSSGRD*GRTRQAGRHRAAGQ
Trigger: CTGGCCTGCTGCCCTATGTCTACCTGCCTGTCTCGTCCTACCTCAGTCGCGCCCGCTGGACCTGGGGAGACCAGACGACACTGCGAGGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR CCA 90 bp GAGTGGGCTGGCCTTAGGGTCCAGGCAGCAGGGCACTGGAGTGTGTaGAGAGACAGACAGCTCTGCCGGCTCCTACTTCCTCCTCGGGCT +
Preference number: 1 (lower is better)
Translates to: EWAGLRVQAAGHWSV*RDRQLCRLLLPPRA
Trigger: AGCCCGAGGAGGAAGTAGGAGCCGGCAGAGCTGTCTGTCTCTCCACACACTCCAGTGCCCTGCTGCCTGGACCCTAAGGCCAGCCCACTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CCA 90 bp TGCCCTCTGGAGTGGGCTGGCCTTAGGGTCCAGGCAGCAGGGCACTaGAGTGTGTGGAGAGACAGACAGCTCTGCCGGCTCCTACTTCCT +
Preference number: 1 (lower is better)
Translates to: CPLEWAGLRVQAAGH*SVWRDRQLCRLLLP
Trigger: AGGAAGTAGGAGCCGGCAGAGCTGTCTGTCTCTCCACACACTCCAGTGCCCTGCTGCCTGGACCCTAAGGCCAGCCCACTCCAGAGGGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR GCA 90 bp GTCCAGGCAGCAGGGCACTGGAGTGTGTGGAGAGACAGACAGCTCTaGCGGCTCCTACTTCCTCCTCGGGCTAACCTCCAGGCAGAAGTT +
Preference number: 1 (lower is better)
Translates to: VQAAGHWSVWRDRQL*RLLLPPRANLQAEV
Trigger: AACTTCTGCCTGGAGGTTAGCCCGAGGAGGAAGTAGGAGCCGGCAGAGCTGTCTGTCTCTCCACACACTCCAGTGCCCTGCTGCCTGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR GCA 90 bp CAGTGCTTTGCTAGTGATGATGGCAGCCACAATGCCCTTGTCCTGTaGCCTCTGGAGTGGGCTGGCCTTAGGGTCCAGGCAGCAGGGCAC +
Preference number: 1 (lower is better)
Translates to: QCFASDDGSHNALVL*PLEWAGLRVQAAGH
Trigger: GTGCCCTGCTGCCTGGACCCTAAGGCCAGCCCACTCCAGAGGGCACAGGACAAGGGCATTGTGGCTGCCATCATCACTAGCAAAGCACTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CCA 90 bp TTGCTAGTGATGATGGCAGCCACAATGCCCTTGTCCTGTGCCCTCTaGAGTGGGCTGGCCTTAGGGTCCAGGCAGCAGGGCACTGGAGTG +
Preference number: 1 (lower is better)
Translates to: LLVMMAATMPLSCAL*SGLALGSRQQGTGV
Trigger: CACTCCAGTGCCCTGCTGCCTGGACCCTAAGGCCAGCCCACTCCAGAGGGCACAGGACAAGGGCATTGTGGCTGCCATCATCACTAGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CCA 90 bp TCCTACTTCCTCCTCGGGCTAACCTCCAGGCAGAAGTTGGCTTTGTaGGGTTCCTGTAGATCTGCCAACCCATGGCACACCAGGGACACG +
Preference number: 1 (lower is better)
Translates to: SYFLLGLTSRQKLAL*GSCRSANPWHTRDT
Trigger: CGTGTCCCTGGTGTGCCATGGGTTGGCAGATCTACAGGAACCCCACAAAGCCAACTTCTGCCTGGAGGTTAGCCCGAGGAGGAAGTAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CCA 90 bp AAAAGGGCTGCTGACAGCCACTCCAGGTTCCGAATCCCAGTACAGTaGAGCACTCGGTTAGTCTCAGACACAAGCGTGGCCAAACCGAGG +
Preference number: 1 (lower is better)
Translates to: KRAADSHSRFRIPVQ*STRLVSDTSVAKPR
Trigger: CCTCGGTTTGGCCACGCTTGTGTCTGAGACTAACCGAGTGCTCCACTGTACTGGGATTCGGAACCTGGAGTGGCTGTCAGCAGCCCTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR TCA 90 bp AGAACTTCAGGCTTCCTGAGAAGCTCTGTTCTCACCCAGGTCATCTaGATGGCCACTGGGAGGAAAGGAGGAAGGGAGGGAAGGAGGAGG +
Preference number: 1 (lower is better)
Translates to: RTSGFLRSSVLTQVI*MATGRKGGREGRRR
Trigger: CCTCCTCCTTCCCTCCCTTCCTCCTTTCCTCCCAGTGGCCATTCAGATGACCTGGGTGAGAACAGAGCTTCTCAGGAAGCCTGAAGTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 90 bp AGGCAGAAGTTGGCTTTGTGGGGTTCCTGTAGATCTGCCAACCCATaGCACACCAGGGACACGGAGGAGGATGCTGGCCAAATCCTGTAT +
Preference number: 1 (lower is better)
Translates to: RQKLALWGSCRSANP*HTRDTEEDAGQILY
Trigger: ATACAGGATTTGGCCAGCATCCTCCTCCGTGTCCCTGGTGTGCCATGGGTTGGCAGATCTACAGGAACCCCACAAAGCCAACTTCTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR GCA 90 bp ACAGCAGGACTTCAGGGTCTATGCCGGTCCCTGGAAGGCGTAACATaGGCTCACAGGCAATGGCATAGTTCTTGTGCCAATTCACTGGGT +
Preference number: 1 (lower is better)
Translates to: TAGLQGLCRSLEGVT*AHRQWHSSCANSLG
Trigger: ACCCAGTGAATTGGCACAAGAACTATGCCATTGCCTGTGAGCGCATGTTACGCCTTCCAGGGACCGGCATAGACCCTGAAGTCCTGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR GCA 90 bp GGGGAGATGGTAAAGGGCTTGCCACACAAGCAAGGAGAGCTGACTTaGTCCCTAGCACTTATGCGAGACCCTGGGTATGCTATGTGCATG +
Preference number: 1 (lower is better)
Translates to: GEMVKGLPHKQGELT*SLALMRDPGYAMCM
Trigger: CATGCACATAGCATACCCAGGGTCTCGCATAAGTGCTAGGGAGCAAGTCAGCTCTCCTTGCTTGTGTGGCAAGCCCTTTACCATCTCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 90 bp GAAATCTATGACCTTCACCTCAGGCTGCAGGTGAGAACCCAGCAATaGCTATGTGCACAGGACCTTGAGCTTCCTGCCCTAGGTGAACCC +
Preference number: 1 (lower is better)
Translates to: EIYDLHLRLQVRTQQ*LCAQDLELPALGEP
Trigger: GGGTTCACCTAGGGCAGGAAGCTCAAGGTCCTGTGCACATAGCCATTGCTGGGTTCTCACCTGCAGCCTGAGGTGAAGGTCATAGATTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 90 bp AGTGTAGCCCTCTGTGGATTCATCAGAGCTCCAGAAAACCAGATATaGAGATGCAGGCACCTCGGTGGGTGGAAACTAGTGACCGTGCGC +
Preference number: 1 (lower is better)
Translates to: SVALCGFIRAPENQI*RCRHLGGWKLVTVR
Trigger: GCGCACGGTCACTAGTTTCCACCCACCGAGGTGCCTGCATCTCCATATCTGGTTTTCTGGAGCTCTGATGAATCCACAGAGGGCTACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR GCA 90 bp AGCCAAAGAAGGCAAGGGACTGAGGTGTGGGTGTGTGCAGCGATGTaGCAAAGGGAATGTGCTGCTAAACAACCCCTTTTGGGTCTAGTG +
Preference number: 1 (lower is better)
Translates to: SQRRQGTEVWVCAAM*QRECAAKQPLLGLV
Trigger: CACTAGACCCAAAAGGGGTTGTTTAGCAGCACATTCCCTTTGGCACATCGCTGCACACACCCACACCTCAGTCCCTTGCCTTCTTTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 90 bp CTGTATAAGAAGCCATCTCCTCACGCCCTCCTCAGCCTCGGGGGCTaGACTGAAGGGAGCCCTTTATCTGATTTTATGCTGTTATGCTCC +
Preference number: 1 (lower is better)
Translates to: LYKKPSPHALLSLGG*TEGSPLSDFMLLCS
Trigger: GGAGCATAACAGCATAAAATCAGATAAAGGGCTCCCTTCAGTCCAGCCCCCGAGGCTGAGGAGGGCGTGAGGAGATGGCTTCTTATACAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CCA 90 bp GGTCTATGCCGGTCCCTGGAAGGCGTAACATGCGCTCACAGGCAATaGCATAGTTCTTGTGCCAATTCACTGGGTGTTCCTCTTGCAAGT +
Preference number: 1 (lower is better)
Translates to: GLCRSLEGVTCAHRQ*HSSCANSLGVPLAS
Trigger: ACTTGCAAGAGGAACACCCAGTGAATTGGCACAAGAACTATGCCATTGCCTGTGAGCGCATGTTACGCCTTCCAGGGACCGGCATAGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR TCA 90 bp CTTTTCCCTCCTGAGAAATCTATGACCTTCACCTCAGGCTGCAGGTaGGAACCCAGCAATGGCTATGTGCACAGGACCTTGAGCTTCCTG +
Preference number: 1 (lower is better)
Translates to: LFPPEKSMTFTSGCR*EPSNGYVHRTLSFL
Trigger: CAGGAAGCTCAAGGTCCTGTGCACATAGCCATTGCTGGGTTCTCACCTGCAGCCTGAGGTGAAGGTCATAGATTTCTCAGGAGGGAAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR TCA 90 bp ACACCACCCCCACTAAGTGTTCAGTGGAACCGGGAAGAGATGACCTaGAAATGGAGATGGAGGCTTCTCTCCGTGGCAGGCAATCTTGAA +
Preference number: 1 (lower is better)
Translates to: TPPPLSVQWNREEMT*KWRWRLLSVAGNLE
Trigger: TTCAAGATTGCCTGCCACGGAGAGAAGCCTCCATCTCCATTTTCAGGTCATCTCTTCCCGGTTCCACTGAACACTTAGTGGGGGTGGTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR CCA 90 bp AGCAGAAGGTCAAGAAGCAGCCAAAGAAGGCAAGGGACTGAGGTGTaGGTGTGTGCAGCGATGTGCCAAAGGGAATGTGCTGCTAAACAA +
Preference number: 1 (lower is better)
Translates to: SRRSRSSQRRQGTEV*VCAAMCQRECAAKQ
Trigger: TTGTTTAGCAGCACATTCCCTTTGGCACATCGCTGCACACACCCACACCTCAGTCCCTTGCCTTCTTTGGCTGCTTCTTGACCTTCTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR TCA 90 bp GGTCGTGGTATGAAAGGGAGCCATGCAAGCTCCACGGGAGACCTTTaGTCAGACCCTTTTGCTAGTACAATGCCACGGAACTGTGACTAT +
Preference number: 1 (lower is better)
Translates to: GRGMKGSHASSTGDL*SDPFASTMPRNCDY
Trigger: ATAGTCACAGTTCCGTGGCATTGTACTAGCAAAAGGGTCTGATCAAAGGTCTCCCGTGGAGCTTGCATGGCTCCCTTTCATACCACGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR TCA 90 bp TGGCATTTCACTCAAAAGCCCTCGGCACTGGTCCTTAACCGCTTATaGCATCACAAAGGACACTCCGGACAGATGCCTACATGGCATCCT +
Preference number: 1 (lower is better)
Translates to: WHFTQKPSALVLNRL*HHKGHSGQMPTWHP
Trigger: AGGATGCCATGTAGGCATCTGTCCGGAGTGTCCTTTGTGATGTCATAAGCGGTTAAGGACCAGTGCCGAGGGCTTTTGAGTGAAATGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR TCA 90 bp TTGTGCAGTCAAGGCCCTGTCAAGCTTTTAGAGGCACCCTTGACTTaGAGCACCATCATGACTGGCATTTCACTCAAAAGCCCTCGGCAC +
Preference number: 1 (lower is better)
Translates to: LCSQGPVKLLEAPLT*STIMTGISLKSPRH
Trigger: GTGCCGAGGGCTTTTGAGTGAAATGCCAGTCATGATGGTGCTTCAAGTCAAGGGTGCCTCTAAAAGCTTGACAGGGCCTTGACTGCACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR GCA 90 bp TGGCTATGTGCACAGGACCTTGAGCTTCCTGCCCTAGGTGAACCCTaGAAGTATGTGGAGATGCTGACAGGAAGGAGTCTTCTTTTCCAA +
Preference number: 1 (lower is better)
Translates to: WLCAQDLELPALGEP*KYVEMLTGRSLLFQ
Trigger: TTGGAAAAGAAGACTCCTTCCTGTCAGCATCTCCACATACTTGCAGGGTTCACCTAGGGCAGGAAGCTCAAGGTCCTGTGCACATAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 90 bp GTCCAGGCACTGCAGGCTCCAATGGACATCTTCAAATCCAGAGAATaGAGGAGCAAGAGCTTCCCCTGTGTGATGCCAAAACCAACAAAG +
Preference number: 1 (lower is better)
Translates to: VQALQAPMDIFKSRE*RSKSFPCVMPKPTK
Trigger: CTTTGTTGGTTTTGGCATCACACAGGGGAAGCTCTTGCTCCTCCATTCTCTGGATTTGAAGATGTCCATTGGAGCCTGCAGTGCCTGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CCA 90 bp TGTCAAGCTTTTAGAGGCACCCTTGACTTGAAGCACCATCATGACTaGCATTTCACTCAAAAGCCCTCGGCACTGGTCCTTAACCGCTTA +
Preference number: 1 (lower is better)
Translates to: CQAFRGTLDLKHHHD*HFTQKPSALVLNRL
Trigger: TAAGCGGTTAAGGACCAGTGCCGAGGGCTTTTGAGTGAAATGCCAGTCATGATGGTGCTTCAAGTCAAGGGTGCCTCTAAAAGCTTGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CCA 90 bp TCTCACACGACTTCACAGAAATGCACACCAGCAAGAAAGAGGCTGTaGGCCACTCCAAAGGCTTTAATCTCACCAGTGTGCATTTTGCTG +
Preference number: 1 (lower is better)
Translates to: SHTTSQKCTPARKRL*ATPKALISPVCILL
Trigger: CAGCAAAATGCACACTGGTGAGATTAAAGCCTTTGGAGTGGCCCACAGCCTCTTTCTTGCTGGTGTGCATTTCTGTGAAGTCGTGTGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR TCA 90 bp GAGGCAGACCTATCTCTGAGTTTAAGGCCAACCTGGTCTACAGAGTaGGTTCCAGAAAAGCCTGGGCTACACAGAGAAACTGTATCTCAA +
Preference number: 1 (lower is better)
Translates to: EADLSLSLRPTWSTE*VPEKPGLHRETVSQ
Trigger: TTGAGATACAGTTTCTCTGTGTAGCCCAGGCTTTTCTGGAACTCACTCTGTAGACCAGGTTGGCCTTAAACTCAGAGATAGGTCTGCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 90 bp GCTTTTCCTGTTAGCCAGCAAAATGGCCAACATTTGAGCAACTGTTaGACAGACTGCAAATCCATTGACCCTCACAGTCTCACCATGGAG +
Preference number: 1 (lower is better)
Translates to: AFPVSQQNGQHLSNC*TDCKSIDPHSLTME
Trigger: CTCCATGGTGAGACTGTGAGGGTCAATGGATTTGCAGTCTGTCCAACAGTTGCTCAAATGTTGGCCATTTTGCTGGCTAACAGGAAAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR GCA 90 bp GTGACACCTTTCTCTATCTTTCATGATGTTGGGACATCTGGACGGTaGTCACCGAGTGTTTTGTTGGCTGTCTTTTGCTTGTGCAATGTT +
Preference number: 1 (lower is better)
Translates to: VTPFSIFHDVGTSGR*SPSVLLAVFCLCNV
Trigger: AACATTGCACAAGCAAAAGACAGCCAACAAAACACTCGGTGAGCACCGTCCAGATGTCCCAACATCATGAAAGATAGAGAAAGGTGTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR TCA 90 bp TCCAGTTATAGATGGCTCTTGTGCGTTCAATCCACTCCTCTGGGTTaGATACAATCTTTGAAGGCACCAATTTGTCACAAGATCCCCATG +
Preference number: 1 (lower is better)
Translates to: SSYRWLLCVQSTPLG*IQSLKAPICHKIPM
Trigger: CATGGGGATCTTGTGACAAATTGGTGCCTTCAAAGATTGTATTCAACCCAGAGGAGTGGATTGAACGCACAAGAGCCATCTATAACTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR TCA 90 bp GTATGTGGAGATGCTGACAGGAAGGAGTCTTCTTTTCCAAGTCCCTaGGCTCTAGAATCAGAATCATTGGTAGGACACTGGATAGTATCA +
Preference number: 1 (lower is better)
Translates to: VCGDADRKESSFPSP*ALESESLVGHWIVS
Trigger: TGATACTATCCAGTGTCCTACCAATGATTCTGATTCTAGAGCTCAGGGACTTGGAAAAGAAGACTCCTTCCTGTCAGCATCTCCACATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR GCA 90 bp TGGTCCTTAACCGCTTATGACATCACAAAGGACACTCCGGACAGATaGCTACATGGCATCCTGCAGCATTTTAAAAGAGAATTAGTGGTT +
Preference number: 1 (lower is better)
Translates to: WSLTAYDITKDTPDR*LHGILQHFKRELVV
Trigger: AACCACTAATTCTCTTTTAAAATGCTGCAGGATGCCATGTAGGCATCTGTCCGGAGTGTCCTTTGTGATGTCATAAGCGGTTAAGGACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR GCA 90 bp ATGCTAATTTGGCAACGTGAGATAAACAGGATTTTGCATAAGGCCTaGATTTCAGCCATTAGCTCGTTTCTGCTGCACGTGACACTGATA +
Preference number: 1 (lower is better)
Translates to: MLIWQREINRILHKA*ISAISSFLLHVTLI
Trigger: TATCAGTGTCACGTGCAGCAGAAACGAGCTAATGGCTGAAATGCAGGCCTTATGCAAAATCCTGTTTATCTCACGTTGCCAAATTAGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR GCA 90 bp TGGGTGTTCCTCTTGCAAGTACACAATCTCCTTATAAAGTTTATATaGATGCGTGTAGAGTTGTGCTTTCACATCTGCAGGAACTGCAGC +
Preference number: 1 (lower is better)
Translates to: WVFLLQVHNLLIKFI*MRVELCFHICRNCS
Trigger: GCTGCAGTTCCTGCAGATGTGAAAGCACAACTCTACACGCATGCATATAAACTTTATAAGGAGATTGTGTACTTGCAAGAGGAACACCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR GCA 90 bp TTCGTGCAAACTGATCAATCACGTTATTGGTTCTTTGGTCACAAATaGTGTAATTTGAGTATACTTGATAAGCAACAAAAAGGGCTGCTG +
Preference number: 1 (lower is better)
Translates to: FVQTDQSRYWFFGHK*CNLSILDKQQKGLL
Trigger: CAGCAGCCCTTTTTGTTGCTTATCAAGTATACTCAAATTACAGCATTTGTGACCAAAGAACCAATAACGTGATTGATCAGTTTGCACGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR CAA 90 bp GACGTGCTCAGTGCTTTGCTAGTGATGATGGCAGCCACAATGCCCTaGTCCTGTGCCCTCTGGAGTGGGCTGGCCTTAGGGTCCAGGCAG +
Preference number: 2 (lower is better)
Translates to: DVLSALLVMMAATMP*SCALWSGLALGSRQ
Trigger: CTGCCTGGACCCTAAGGCCAGCCCACTCCAGAGGGCACAGGACAAGGGCATTGTGGCTGCCATCATCACTAGCAAAGCACTGAGCACGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CAA 90 bp GGCTCCTACTTCCTCCTCGGGCTAACCTCCAGGCAGAAGTTGGCTTaGTGGGGTTCCTGTAGATCTGCCAACCCATGGCACACCAGGGAC +
Preference number: 2 (lower is better)
Translates to: GSYFLLGLTSRQKLA*WGSCRSANPWHTRD
Trigger: GTCCCTGGTGTGCCATGGGTTGGCAGATCTACAGGAACCCCACAAAGCCAACTTCTGCCTGGAGGTTAGCCCGAGGAGGAAGTAGGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CAA 90 bp TCTGCCGGCTCCTACTTCCTCCTCGGGCTAACCTCCAGGCAGAAGTaGGCTTTGTGGGGTTCCTGTAGATCTGCCAACCCATGGCACACC +
Preference number: 2 (lower is better)
Translates to: SAGSYFLLGLTSRQK*ALWGSCRSANPWHT
Trigger: GGTGTGCCATGGGTTGGCAGATCTACAGGAACCCCACAAAGCCAACTTCTGCCTGGAGGTTAGCCCGAGGAGGAAGTAGGAGCCGGCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CAA 90 bp ACAAGCGTGGCCAAACCGAGGCCAGCGAGAACGGCCACCACCGCATaGCTCTGCAGCCAGAATCGTTCCACCACACCCATGAAAAGTGGT +
Preference number: 2 (lower is better)
Translates to: TSVAKPRPARTATTA*LCSQNRSTTPMKSG
Trigger: ACCACTTTTCATGGGTGTGGTGGAACGATTCTGGCTGCAGAGCAATGCGGTGGTGGCCGTTCTCGCTGGCCTCGGTTTGGCCACGCTTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR-3UTR CCA 90 bp GGAATCAGGGCCCGCTTTCCAGCAGGGCTGAACAGGGACATGTGTCAAGGCTACGGGTTTGCTGGGCAGTaGTGGCGAATGCCAGCATTC +
Preference number: 2 (lower is better)
Translates to: GIRARFPAGLNRDMCQGYGFAGQ*WRMPAF
Trigger: GAATGCTGGCATTCGCCACCACTGCCCAGCAAACCC...GTAGCCTTGACACATGTCCCTGTTCAGCCCTGCTGGAAAGCGGGCCCTGATTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp TGCACACCAGCAAGAAAGAGGCTGTGGGCCACTCCAAAGGCTTTAATCTCACCACTCCCCCACAGACTGTaGACTGGAGAGCTGGGAGGG +
Preference number: 2 (lower is better)
Translates to: CTPARKRLWATPKALISPLPHRL*TGELGG
Trigger: CCCTCCCAGCTCTCCAGTTCACAGTCTGTGGGGGAG...TGGTGAGATTAAAGCCTTTGGAGTGGCCCACAGCCTCTTTCTTGCTGGTGTGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp ATGGAGATGCAGGCACCTCGGTGGGTGGAAACTAGTGACCGTGCGCTGAGAGGACAAGGTGAGTGGAGCTaGTTGGAGCTAGAGAGATGG +
Preference number: 2 (lower is better)
Translates to: MEMQAPRWVETSDRALRGQGEWS*LELERW
Trigger: CCATCTCTCTAGCTCCAATCAGCTCCACTCACCTTG...TCCTCTCAGCGCACGGTCACTAGTTTCCACCCACCGAGGTGCCTGCATCTCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp CAGTGCTTTGCTAGTGATGATGGCAGCCACAATGCCCTTGTCCTGTGCCCTCTGAATGCCACGGAACTGTaGCTATTCCTGGTAAGGGGC +
Preference number: 2 (lower is better)
Translates to: QCFASDDGSHNALVLCPLNATEL*LFLVRG
Trigger: GCCCCTTACCAGGAATAGTCACAGTTCCGTGGCATT...CAGAGGGCACAGGACAAGGGCATTGTGGCTGCCATCATCACTAGCAAAGCACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR CCA 90 bp GGAATCAGGGCCCGCTTTCCAGCAGGGCTGAACAGGGACATGTGTCAAGGCTACTGCGCTGAGAGGAAGTaGGAACCATTTCTTAAGCAG +
Preference number: 2 (lower is better)
Translates to: GIRARFPAGLNRDMCQGYCAERK*EPFLKQ
Trigger: CTGCTTAAGAAATGGTTCCCACTTCCTCTCAGCGCA...GTAGCCTTGACACATGTCCCTGTTCAGCCCTGCTGGAAAGCGGGCCCTGATTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CAA 90 bp TGGGGAGATGGTAAAGGGCTTGCCACACAAGCAAGGAGAGCTGACTaGCTCCCTAGCACTTATGCGAGACCCTGGGTATGCTATGTGCAT +
Preference number: 2 (lower is better)
Translates to: WGDGKGLATQARRAD*LPSTYARPWVCYVH
Trigger: ATGCACATAGCATACCCAGGGTCTCGCATAAGTGCTAGGGAGCAAGTCAGCTCTCCTTGCTTGTGTGGCAAGCCCTTTACCATCTCCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp GGAATCAGGGCCCGCTTTCCAGCAGGGCTGAACAGGGACATGTGTCAAGGCTACAGTATGTGGAGATGCTaGCAGGAAGGAGTCTTCTTT +
Preference number: 2 (lower is better)
Translates to: GIRARFPAGLNRDMCQGYSMWRC*QEGVFF
Trigger: AAAGAAGACTCCTTCCTGTCAGCATCTCCACATACT...GTAGCCTTGACACATGTCCCTGTTCAGCCCTGCTGGAAAGCGGGCCCTGATTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CAA 90 bp AAGGGAGCCATGCAAGCTCCACGGGAGACCTTTGATCAGACCCTTTaGCTAGTACAATGCCACGGAACTGTGACTATTCCTGGTAAGGGG +
Preference number: 2 (lower is better)
Translates to: KGAMQAPRETFDQTL*LVQCHGTVTIPGKG
Trigger: CCCCTTACCAGGAATAGTCACAGTTCCGTGGCATTGTACTAGCAAAAGGGTCTGATCAAAGGTCTCCCGTGGAGCTTGCATGGCTCCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR TCA 90 bp TGCACACCAGCAAGAAAGAGGCTGTGGGCCACTCCAAAGGCTTTAATCTCACCAACCTGGTCTACAGAGTaGGTTCCAGAAAAGCCTGGG +
Preference number: 2 (lower is better)
Translates to: CTPARKRLWATPKALISPTWSTE*VPEKPG
Trigger: CCCAGGCTTTTCTGGAACTCACTCTGTAGACCAGGT...TGGTGAGATTAAAGCCTTTGGAGTGGCCCACAGCCTCTTTCTTGCTGGTGTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp GGAATCAGGGCCCGCTTTCCAGCAGGGCTGAACAGGGACATGTGTCAAGGCTACAAAATGGCCAACATTTaGGCAACTGTTGGACAGACT +
Preference number: 2 (lower is better)
Translates to: GIRARFPAGLNRDMCQGYKMANI*ATVGQT
Trigger: AGTCTGTCCAACAGTTGCTCAAATGTTGGCCATTTT...GTAGCCTTGACACATGTCCCTGTTCAGCCCTGCTGGAAAGCGGGCCCTGATTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR GCA 90 bp AATGGAGTCTTCATTCTTGCTTGCCACATCTCCTCATTGGCCACCGATTCCCAACGGCCACCACCGCATTaGTCTGCAGCCAGAATCGTT +
Preference number: 2 (lower is better)
Translates to: NGVFILACHISSLATDSQRPPPH*SAARIV
Trigger: AACGATTCTGGCTGCAGAGCAATGCGGTGGTGGCCG...TTGGGAATCGGTGGCCAATGAGGAGATGTGGCAAGCAAGAATGAAGACTCCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR-3UTR CCA 90 bp GGAATCAGGGCCCGCTTTCCAGCAGGGCTGAACAGGGACATGTGTCAAGGCTACTTCGATTTCTGTTCTTaGCTCCAATGGAGGCAACAT +
Preference number: 2 (lower is better)
Translates to: GIRARFPAGLNRDMCQGYFDFCS*LQWRQH
Trigger: ATGTTGCCTCCATTGGAGCCAAGAACAGAAATCGAA...GTAGCCTTGACACATGTCCCTGTTCAGCCCTGCTGGAAAGCGGGCCCTGATTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR GCA 90 bp GGAATCAGGGCCCGCTTTCCAGCAGGGCTGAACAGGGACATGTGTCAAGGCTACACATGCCACTTGATGTaGGTTTTCATGCAGTATTCA +
Preference number: 2 (lower is better)
Translates to: GIRARFPAGLNRDMCQGYTCHLM*VFMQYS
Trigger: TGAATACTGCATGAAAACGCACATCAAGTGGCATGT...GTAGCCTTGACACATGTCCCTGTTCAGCCCTGCTGGAAAGCGGGCCCTGATTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR GCA 90 bp CAACTTCACCTTGTGAATGTCTCACACGACTTCACAGAAATGCACACCAGCAAGCTTTCTAGAACAGTCTaGCTCCCTCCCCACCCCTCC +
Preference number: 2 (lower is better)
Translates to: QLHLVNVSHDFTEMHTSKLSRTV*LPPHPS
Trigger: GGAGGGGTGGGGAGGGAGGCAGACTGTTCTAGAAAG...CTTGCTGGTGTGCATTTCTGTGAAGTCGTGTGAGACATTCACAAGGTGAAGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR GCA 90 bp TACCGACTCTCTCCAATAAAACAGGGCAGTGGCATATCACTTCCAGGATTAGGTAGGGTCCTGAGAAGTTaGAACCCTGGCCCCCACCTT +
Preference number: 2 (lower is better)
Translates to: YRLSPIKQGSGISLPGLGRVLRS*NPGPHL
Trigger: AAGGTGGGGGCCAGGGTTGCAACTTCTCAGGACCCT...ACCTAATCCTGGAAGTGATATGCCACTGCCCTGTTTTATTGGAGAGAGTCGGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR-3UTR CCA 90 bp AATGTCTGCTCGCTGTGGATCATTTTGTGCTTTCTGAGTGTAGAGATGAAAATGCCTCGCAGTGTCGTCTaGTCTCCCCAGGTCCAGCGG +
Preference number: 2 (lower is better)
Translates to: NVCSLWIILCFLSVEMKMPRSVV*SPQVQR
Trigger: CCGCTGGACCTGGGGAGACCAGACGACACTGCGAGG...CATTTTCATCTCTACACTCAGAAAGCACAAAATGATCCACAGCGAGCAGACATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR CAA 90 bp ATTGTGCAGTCAAGGCCCTGTCAAGCTTTTAGAGGCACCCTTGACTaGAAGCACCATCATGACTGGCATTTCACTCAAAAGCCCTCGGCA +
Preference number: 2 (lower is better)
Translates to: IVQSRPCQAFRGTLD*KHHHDWHFTQKPSA
Trigger: TGCCGAGGGCTTTTGAGTGAAATGCCAGTCATGATGGTGCTTCAAGTCAAGGGTGCCTCTAAAAGCTTGACAGGGCCTTGACTGCACAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR TCA 90 bp TGCACACCAGCAAGAAAGAGGCTGTGGGCCACTCCAAAGGCTTTAATCTCACCAGAGAGGAAAAGCCTTTaGAAAGCCAAGGTGAGTGGA +
Preference number: 2 (lower is better)
Translates to: CTPARKRLWATPKALISPERKSL*KAKVSG
Trigger: TCCACTCACCTTGGCTTTTCAAAGGCTTTTCCTCTC...TGGTGAGATTAAAGCCTTTGGAGTGGCCCACAGCCTCTTTCTTGCTGGTGTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp TGGAGATGGAGGCTTCTCTCCGTGGCAGGCAATCTTGAAGACAGTCCTGGTAATCAAGGTAGCCTTTCCTaGCCTTCTGAGGAATCTACT +
Preference number: 2 (lower is better)
Translates to: WRWRLLSVAGNLEDSPGNQGSLS*PSEEST
Trigger: AGTAGATTCCTCAGAAGGTCAGGAAAGGCTACCTTG...ATTACCAGGACTGTCTTCAAGATTGCCTGCCACGGAGAGAAGCCTCCATCTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR-3UTR GCA 90 bp CTGAAGATGAAGAATGGAGTCTTCATTCTTGCTTGCCACATCTCCTCATTGGCCACCACCGCATTGCTCTaGAGCCAGAATCGTTCCACC +
Preference number: 2 (lower is better)
Translates to: LKMKNGVFILACHISSLATTALL*SQNRST
Trigger: GGTGGAACGATTCTGGCTGCAGAGCAATGCGGTGGT...GGCCAATGAGGAGATGTGGCAAGCAAGAATGAAGACTCCATTCTTCATCTTCAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR-3UTR CCA 90 bp CCGATTCCCAAGAAGATGGACCAAATCTTTCATAGGCCTCAGTCCAGTTATAGATCTCAGACACAAGCGTaGCCAAACCGAGGCCAGCGA +
Preference number: 2 (lower is better)
Translates to: PIPKKMDQIFHRPQSSYRSQTQA*PNRGQR
Trigger: TCGCTGGCCTCGGTTTGGCCACGCTTGTGTCTGAGA...TCTATAACTGGACTGAGGCCTATGAAAGATTTGGTCCATCTTCTTGGGAATCGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR-3UTR CCA 90 bp TGCACACCAGCAAGAAAGAGGCTGTGGGCCACTCCAAAGGCTTTAATCTCACCATGTGAACTGGAGAGCTaGGAGGGATTCGATTTCTGT +
Preference number: 2 (lower is better)
Translates to: CTPARKRLWATPKALISPCELES*EGFDFC
Trigger: ACAGAAATCGAATCCCTCCCAGCTCTCCAGTTCACA...TGGTGAGATTAAAGCCTTTGGAGTGGCCCACAGCCTCTTTCTTGCTGGTGTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CCA 90 bp TGCACACCAGCAAGAAAGAGGCTGTGGGCCACTCCAAAGGCTTTAATCTCACCACTGAGACTGAGAAGCTaGAGAGAGGGTAGTATGGTT +
Preference number: 2 (lower is better)
Translates to: CTPARKRLWATPKALISPLRLRS*REGSMV
Trigger: AACCATACTACCCTCTCTCCAGCTTCTCAGTCTCAG...TGGTGAGATTAAAGCCTTTGGAGTGGCCCACAGCCTCTTTCTTGCTGGTGTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CCA 90 bp CACCTTTCTCTATCTTTCATGATGTTGGGACATCTGGACGGTGCTCACCGAGTGGCAAGGGTTCTTTGTTaGTGCTCTGTGGAATCAGGG +
Preference number: 2 (lower is better)
Translates to: HLSLSFMMLGHLDGAHRVARVLC*CSVESG
Trigger: CCCTGATTCCACAGAGCACCAACAAAGAACCCTTGC...CACTCGGTGAGCACCGTCCAGATGTCCCAACATCATGAAAGATAGAGAAAGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CAA 90 bp ACCTGTGAAAGCAGTACTGTAGACACGCTCGATCCCACTTCAGACTaGGCCAGGCTGAACGTTCCATATTCTTCCCTGAAGAAATGTGTC +
Preference number: 2 (lower is better)
Translates to: TCESSTVDTLDPTSD*ARLNVPYSSLKKCV
Trigger: GACACATTTCTTCAGGGAAGAATATGGAACGTTCAGCCTGGCCAAGTCTGAAGTGGGATCGAGCGTGTCTACAGTACTGCTTTCACAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR CAA 90 bp CATTATTACGTTTTTGCACACCGAGTTGGGGAGATGGTAAAGGGCTaGCCACACAAGCAAGGAGAGCTGACTTGCTCCCTAGCACTTATG +
Preference number: 2 (lower is better)
Translates to: HYYVFAHRVGEMVKG*PHKQGELTCSLALM
Trigger: CATAAGTGCTAGGGAGCAAGTCAGCTCTCCTTGCTTGTGTGGCAAGCCCTTTACCATCTCCCCAACTCGGTGTGCAAAAACGTAATAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp CAGTGCTTTGCTAGTGATGATGGCAGCCACAATGCCCTTGTCCTGTGCCCTCTGTGCAGCTTCTGTACTTaGAGGAAAAATTCTTGGACT +
Preference number: 2 (lower is better)
Translates to: QCFASDDGSHNALVLCPLCSFCT*RKNSWT
Trigger: AGTCCAAGAATTTTTCCTTCAAGTACAGAAGCTGCA...CAGAGGGCACAGGACAAGGGCATTGTGGCTGCCATCATCACTAGCAAAGCACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR TCA 90 bp TGCACACCAGCAAGAAAGAGGCTGTGGGCCACTCCAAAGGCTTTAATCTCACCACCAACAAGGAGGCTCTaGAGACTTACATTACTAAGG +
Preference number: 2 (lower is better)
Translates to: CTPARKRLWATPKALISPPTRRL*RLTLLR
Trigger: CCTTAGTAATGTAAGTCTTCAGAGCCTCCTTGTTGG...TGGTGAGATTAAAGCCTTTGGAGTGGCCCACAGCCTCTTTCTTGCTGGTGTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp CAACTTCACCTTGTGAATGTCTCACACGACTTCACAGAAATGCACACCAGCAAGAGATCAGGGGGCCATTaGGGAACCCAAGTAGTGGTT +
Preference number: 2 (lower is better)
Translates to: QLHLVNVSHDFTEMHTSKRSGGH*GTQVVV
Trigger: AACCACTACTTGGGTTCCTCAATGGCCCCCTGATCT...CTTGCTGGTGTGCATTTCTGTGAAGTCGTGTGAGACATTCACAAGGTGAAGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR GCA 90 bp GGTAAGAAGTGGGACGTGCTCAGTGCTTTGCTAGTGATGATGGCAGCCACAATGCCAGTGATCTTTGAATaGAGACAAGCTTCTAGCCCT +
Preference number: 2 (lower is better)
Translates to: GKKWDVLSALLVMMAATMPVIFE*RQASSP
Trigger: AGGGCTAGAAGCTTGTCTGCATTCAAAGATCACTGG...CATTGTGGCTGCCATCATCACTAGCAAAGCACTGAGCACGTCCCACTTCTTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR GCA 90 bp ACTCATGTGCAAAGCACACTCGGCAGCGGACATGCCTACTACATGCTGATACACTTTCTGGCTCTTCCCTaGGGAGAAGTTACTTTCAAG +
Preference number: 2 (lower is better)
Translates to: THVQSTLGSGHAYYMLIHFLALP*GEVTFK
Trigger: CTTGAAAGTAACTTCTCCGCAGGGAAGAGCCAGAAA...GTGTATCAGCATGTAGTAGGCATGTCCGCTGCCGAGTGTGCTTTGCACATGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR GCA 90 bp CAACTTCACCTTGTGAATGTCTCACACGACTTCACAGAAATGCACACCAGCAAGGTTAGGAGCACTGACTaGTCTTCCAGAGGTCCTGAG +
Preference number: 2 (lower is better)
Translates to: QLHLVNVSHDFTEMHTSKVRSTD*SSRGPE
Trigger: CTCAGGACCTCTGGAAGAGCAGTCAGTGCTCCTAAC...CTTGCTGGTGTGCATTTCTGTGAAGTCGTGTGAGACATTCACAAGGTGAAGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR GCA 90 bp GGCCACTCCAAAGGCTTTAATCTCACCAGTGTGCATTTTGCTGCCATGTCTATAGTGTGTGCAGCGATGTaGCAAAGGGAATGTGCTGCT +
Preference number: 2 (lower is better)
Translates to: GHSKGFNLTSVHFAAMSIVCAAM*QRECAA
Trigger: AGCAGCACATTCCCTTTGGCACATCGCTGCACACAC...TATAGACATGGCAGCAAAATGCACACTGGTGAGATTAAAGCCTTTGGAGTGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CCA 90 bp CTCACAGGCAATGGCATAGTTCTTGTGCCAATTCACTGGGTGTTCCTCTTGCAATGGCATCCTGAGGCATaGAGTCCAGAAGATTTCGTG +
Preference number: 2 (lower is better)
Translates to: LTGNGIVLVPIHWVFLLQWHPEA*SPEDFV
Trigger: CACGAAATCTTCTGGACTCCATGCCTCAGGATGCCA...TTGCAAGAGGAACACCCAGTGAATTGGCACAAGAACTATGCCATTGCCTGTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR-3UTR CCA 90 bp ATGGAGATGCAGGCACCTCGGTGGGTGGAAACTAGTGACCGTGCGCTGAGAGGATATCAAATGTATAGATaGCAAACTCTGAGACTGAGA +
Preference number: 2 (lower is better)
Translates to: MEMQAPRWVETSDRALRGYQMYR*QTLRLR
Trigger: TCTCAGTCTCAGAGTTTGCCATCTATACATTTGATA...TCCTCTCAGCGCACGGTCACTAGTTTCCACCCACCGAGGTGCCTGCATCTCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CCA 90 bp TGCACACCAGCAAGAAAGAGGCTGTGGGCCACTCCAAAGGCTTTAATCTCACCAGTTACTACTCAGGCCTaGGACATCTGGACTTTGTTT +
Preference number: 2 (lower is better)
Translates to: CTPARKRLWATPKALISPVTTQA*DIWTLF
Trigger: AAACAAAGTCCAGATGTCCCAGGCCTGAGTAGTAAC...TGGTGAGATTAAAGCCTTTGGAGTGGCCCACAGCCTCTTTCTTGCTGGTGTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CAA 90 bp GAGATTTATTTACTGGCAGCTGACAAGGGGCAAATTCAGCTCGAATaGTGCAGTCAAGGCCCTGTCAAGCTTTTAGAGGCACCCTTGACT +
Preference number: 2 (lower is better)
Translates to: EIYLLAADKGQIQLE*CSQGPVKLLEAPLT
Trigger: AGTCAAGGGTGCCTCTAAAAGCTTGACAGGGCCTTGACTGCACAATTCGAGCTGAATTTGCCCCTTGTCAGCTGCCAGTAAATAAATCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR TCA 90 bp CTGTCCAGGCACTGCAGGCTCCAATGGACATCTTCAAATCCAGAGAATGGAGGACTAGGTCTAGATCTGTaGATCCAAAGAGAAGGACAA +
Preference number: 2 (lower is better)
Translates to: LSRHCRLQWTSSNPENGGLGLDL*IQREGQ
Trigger: TTGTCCTTCTCTTTGGATTCACAGATCTAGACCTAG...TCCTCCATTCTCTGGATTTGAAGATGTCCATTGGAGCCTGCAGTGCCTGGACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR TCA 90 bp CAACTTCACCTTGTGAATGTCTCACACGACTTCACAGAAATGCACACCAGCAAGAGACACAGGGCCCAGTaGGAGGAAAAGCCTTTGAAA +
Preference number: 2 (lower is better)
Translates to: QLHLVNVSHDFTEMHTSKRHRAQ*EEKPLK
Trigger: TTTCAAAGGCTTTTCCTCTCACTGGGCCCTGTGTCT...CTTGCTGGTGTGCATTTCTGTGAAGTCGTGTGAGACATTCACAAGGTGAAGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp CAACTTCACCTTGTGAATGTCTCACACGACTTCACAGAAATGCACACCAGCAAGCTCCTGAGAAATCTATaGCCTTCACCTCAGGCTGCA +
Preference number: 2 (lower is better)
Translates to: QLHLVNVSHDFTEMHTSKLLRNL*PSPQAA
Trigger: TGCAGCCTGAGGTGAAGGTCATAGATTTCTCAGGAG...CTTGCTGGTGTGCATTTCTGTGAAGTCGTGTGAGACATTCACAAGGTGAAGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp CAACTCCACTCTCTTTTCTCCCTGAAGAAGAATCTAGAACCCACTAATCTGAGACTAGTGACCGTGCGCTaGGAGGAAGTGGGAACCATT +
Preference number: 2 (lower is better)
Translates to: QLHSLFSLKKNLEPTNLRLVTVR*EEVGTI
Trigger: AATGGTTCCCACTTCCTCTCAGCGCACGGTCACTAG...TCTCAGATTAGTGGGTTCTAGATTCTTCTTCAGGGAGAAAAGAGAGTGGAGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp CAACTCCACTCTCTTTTCTCCCTGAAGAAGAATCTAGAACCCACTAATCTGAGAGCTTTCCAGCAGGGCTaGACAGGGACATGTGTCAAG +
Preference number: 2 (lower is better)
Translates to: QLHSLFSLKKNLEPTNLRAFQQG*TGTCVK
Trigger: CTTGACACATGTCCCTGTTCAGCCCTGCTGGAAAGC...TCTCAGATTAGTGGGTTCTAGATTCTTCTTCAGGGAGAAAAGAGAGTGGAGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR GCA 90 bp CACCTTTCTCTATCTTTCATGATGTTGGGACATCTGGACGGTGCTCACCGAGTGCTCATCTGCTTTCTCTaGTGTGATCATGGTAGATGG +
Preference number: 2 (lower is better)
Translates to: HLSLSFMMLGHLDGAHRVLICFL*CDHGRW
Trigger: CCATCTACCATGATCACAGCAGAGAAAGCAGATGAG...CACTCGGTGAGCACCGTCCAGATGTCCCAACATCATGAAAGATAGAGAAAGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CCA 90 bp ATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTGGACTTCAGAAACTTTaGGAGCAGAGCGGTAAGCAG +
Preference number: 2 (lower is better)
Translates to: MSPMSVETVPSQLEPTVSGLQKL*EQSGKQ
Trigger: CTGCTTACCGCTCTGCTCCCAAAGTTTCTGAAGTCC...ACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACATTGGAGACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR CAA 90 bp TGGGACATCTGGACGGTGCTCACCGAGTGTTTTGTTGGCTGTCTTTaGCTTGTGCAATGTTTTCTCACAATTAATGAGTGGACGACATCG +
Preference number: 2 (lower is better)
Translates to: WDIWTVLTECFVGCL*LVQCFLTINEWTTS
Trigger: CGATGTCGTCCACTCATTAATTGTGAGAAAACATTGCACAAGCAAAAGACAGCCAACAAAACACTCGGTGAGCACCGTCCAGATGTCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp CAACTCCACTCTCTTTTCTCCCTGAAGAAGAATCTAGAACCCACTAATCTGAGAGAACTTCAGGCTTCCTaGGAAGCTCTGTTCTCACCC +
Preference number: 2 (lower is better)
Translates to: QLHSLFSLKKNLEPTNLRELQAS*EALFSP
Trigger: GGGTGAGAACAGAGCTTCTCAGGAAGCCTGAAGTTC...TCTCAGATTAGTGGGTTCTAGATTCTTCTTCAGGGAGAAAAGAGAGTGGAGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR GCA 90 bp GTGATCATGGTAGATGGAGAATTGAGAACACTTCTTTGCTGTGGGAAGACAGCAGCGAGACCCTGGGTATaGTATGTGCATGTGTTCCAT +
Preference number: 2 (lower is better)
Translates to: VIMVDGELRTLLCCGKTAARPWV*YVHVFH
Trigger: ATGGAACACATGCACATAGCATACCCAGGGTCTCGC...TGCTGTCTTCCCACAGCAAAGAAGTGTTCTCAATTCTCCATCTACCATGATCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CAA 90 bp TTGATCATTGGTGTGCCCAACCAGCAAAGAGCATTGTTCTCTCTTTaGTTCTGCCCAAGGCCTGAAAGCAGTCGACAAAAGATGACAAAG +
Preference number: 2 (lower is better)
Translates to: LIIGVPNQQRALFSL*FCPRPESSRQKMTK
Trigger: CTTTGTCATCTTTTGTCGACTGCTTTCAGGCCTTGGGCAGAACAAAAGAGAGAACAATGCTCTTTGCTGGTTGGGCACACCAATGATCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp CCAATAAGCATGGAGACATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCTACAGTCAGTTGCTCTaGGGACTACAGATGTTTTTG +
Preference number: 2 (lower is better)
Translates to: PISMETCLQCLWRQFLLSYSQLL*GLQMFL
Trigger: CAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTA...GCTGAGAAGGAACTGTCTCCACAGACATTGGAGACATGTCTCCATGCTTATTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR-3UTR TCA 90 bp ACTCATGTGCAAAGCACACTCGGCAGCGGACATGCCTACTACATGCTGATACACAAGAATTGGTTTTTCTaGACCAATAAAGGCTCTCTG +
Preference number: 2 (lower is better)
Translates to: THVQSTLGSGHAYYMLIHKNWFF*TNKGSL
Trigger: CAGAGAGCCTTTATTGGTTCAGAAAAACCAATTCTT...GTGTATCAGCATGTAGTAGGCATGTCCGCTGCCGAGTGTGCTTTGCACATGAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR TCA 90 bp CAACTCCACTCTCTTTTCTCCCTGAAGAAGAATCTAGAACCCACTAATCTGAGAGTCTTCTGGTGCATCTaGACAGAGGGACAACGTACT +
Preference number: 2 (lower is better)
Translates to: QLHSLFSLKKNLEPTNLRVFWCI*TEGQRT
Trigger: AGTACGTTGTCCCTCTGTTCAGATGCACCAGAAGAC...TCTCAGATTAGTGGGTTCTAGATTCTTCTTCAGGGAGAAAAGAGAGTGGAGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR GCA 90 bp AAAGAGGCCTCGGCTGCTCCTTGTGAGCCTAGACAGACACTGTTCCTTTTAAATATTTTGCATAAGGCCTaGATTTCAGCCATTAGCTCG +
Preference number: 2 (lower is better)
Translates to: KEASAAPCEPRQTLFLLNILHKA*ISAISS
Trigger: CGAGCTAATGGCTGAAATGCAGGCCTTATGCAAAAT...ATTTAAAAGGAACAGTGTCTGTCTAGGCTCACAAGGAGCAGCCGAGGCCTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR GCA 90 bp ATGAATTTATTGAACGACGTCCTCACCCCCACTCTCGCCCATGCCCCTTTGTTCGACTACAGATGTTTTTaGATGCTTCTCATGGAAATG +
Preference number: 2 (lower is better)
Translates to: MNLLNDVLTPTLAHAPLFDYRCF*MLLMEM
Trigger: CATTTCCATGAGAAGCATGCAAAAACATCTGTAGTC...GAACAAAGGGGCATGGGCGAGAGTGGGGGTGAGGACGTCGTTCAATAAATTCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR GCA 90 bp GCTGTTATGCTCCAGCCAAGGAAAAGCAATAGCAAGTTAGGAAAAGCAACTTTTTATGAAAGGGAGCCATaGAAGCTCCACGGGAGACCT +
Preference number: 2 (lower is better)
Translates to: AVMLQPRKSNSKLGKATFYEREP*KLHGRP
Trigger: AGGTCTCCCGTGGAGCTTGCATGGCTCCCTTTCATA...AAAAGTTGCTTTTCCTAACTTGCTATTGCTTTTCCTTGGCTGGAGCATAACAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR CCA 90 bp GGTAAGAAGTGGGACGTGCTCAGTGCTTTGCTAGTGATGATGGCAGCCACAATGTTAAGAATTTACCCTTaGATCCCAATAAGCATGGAG +
Preference number: 2 (lower is better)
Translates to: GKKWDVLSALLVMMAATMLRIYP*IPISME
Trigger: CTCCATGCTTATTGGGATCCAAGGGTAAATTCTTAA...CATTGTGGCTGCCATCATCACTAGCAAAGCACTGAGCACGTCCCACTTCTTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR CCA 90 bp CTGAAGATGAAGAATGGAGTCTTCATTCTTGCTTGCCACATCTCCTCATTGGCCCAGTCCAGTTATAGATaGCTCTTGTGCGTTCAATCC +
Preference number: 2 (lower is better)
Translates to: LKMKNGVFILACHISSLAQSSYR*LLCVQS
Trigger: GGATTGAACGCACAAGAGCCATCTATAACTGGACTG...GGCCAATGAGGAGATGTGGCAAGCAAGAATGAAGACTCCATTCTTCATCTTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR-3UTR CCA 90 bp CTCTTGCTTTTGACAGGAATCAGCTATTTTATGAAGAGAGCCACATGGGATATAGAGAAGTTGCAACCCTaGCCCCCACCTTGTCTTGTG +
Preference number: 2 (lower is better)
Translates to: LLLLTGISYFMKRATWDIEKLQP*PPPCLV
Trigger: CACAAGACAAGGTGGGGGCCAGGGTTGCAACTTCTC...TATATCCCATGTGGCTCTCTTCATAAAATAGCTGATTCCTGTCAAAAGCAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR CAA 90 bp AATCTTATCTCTTTGATCATTGGTGTGCCCAACCAGCAAAGAGCATaGTTCTCTCTTTTGTTCTGCCCAAGGCCTGAAAGCAGTCGACAA +
Preference number: 2 (lower is better)
Translates to: NLISLIIGVPNQQRA*FSLLFCPRPESSRQ
Trigger: TTGTCGACTGCTTTCAGGCCTTGGGCAGAACAAAAGAGAGAACAATGCTCTTTGCTGGTTGGGCACACCAATGATCAAAGAGATAAGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp ATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTGAGTGCAGCTTCTGTACTTaGAGGAAAAATTCTTGGACT +
Preference number: 2 (lower is better)
Translates to: MSVETVPSQLEPTVSCSECSFCT*RKNSWT
Trigger: AGTCCAAGAATTTTTCCTTCAAGTACAGAAGCTGCA...CTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR-3UTR TCA 90 bp GAAGATTTCGTGCAAACTGATCAATCACGTTATTGGTTCTTTGGTCACAAATGCCAGACTTGGCCAGGCTaGACGTTCCATATTCTTCCC +
Preference number: 2 (lower is better)
Translates to: EDFVQTDQSRYWFFGHKCQTWPG*TFHILP
Trigger: GGGAAGAATATGGAACGTTCAGCCTGGCCAAGTCTG...GCATTTGTGACCAAAGAACCAATAACGTGATTGATCAGTTTGCACGAAATCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR-3UTR TCA 90 bp CTGAAGATGAAGAATGGAGTCTTCATTCTTGCTTGCCACATCTCCTCATTGGCCGTTGGGTCGCCTTCATaGATTCCTATGCAAACAAAT +
Preference number: 2 (lower is better)
Translates to: LKMKNGVFILACHISSLAVGSPS*IPMQTN
Trigger: ATTTGTTTGCATAGGAATTCATGAAGGCGACCCAAC...GGCCAATGAGGAGATGTGGCAAGCAAGAATGAAGACTCCATTCTTCATCTTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR-3UTR TCA 90 bp GCAGCTTCTTTTAAATCCCTTTATTTTGGAAAGGTTGGAGAATTACAGCAGTGTGCTTCCTGCCCTAGGTaGACCCTGCAAGTATGTGGA +
Preference number: 2 (lower is better)
Translates to: AASFKSLYFGKVGELQQCASCPR*TLQVCG
Trigger: TCCACATACTTGCAGGGTTCACCTAGGGCAGGAAGC...ACACTGCTGTAATTCTCCAACCTTTCCAAAATAAAGGGATTTAAAAGAAGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp GCAGCTTCTTTTAAATCCCTTTATTTTGGAAAGGTTGGAGAATTACAGCAGTGTACCTCAGGCTGCAGGTaGGAACCCAGCAATGGCTAT +
Preference number: 2 (lower is better)
Translates to: AASFKSLYFGKVGELQQCTSGCR*EPSNGY
Trigger: ATAGCCATTGCTGGGTTCTCACCTGCAGCCTGAGGT...ACACTGCTGTAATTCTCCAACCTTTCCAAAATAAAGGGATTTAAAAGAAGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp CAACTTCACCTTGTGAATGTCTCACACGACTTCACAGAAATGCACACCAGCAAGGTCTTCTTAGCTCTGTaGCACCTTTCTCTATCTTTC +
Preference number: 2 (lower is better)
Translates to: QLHLVNVSHDFTEMHTSKVFLAL*HLSLSF
Trigger: GAAAGATAGAGAAAGGTGTCACAGAGCTAAGAAGAC...CTTGCTGGTGTGCATTTCTGTGAAGTCGTGTGAGACATTCACAAGGTGAAGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR GCA 90 bp ATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTATTTTGCATAAGGCCTaGATTTCAGCCATTAGCTCG +
Preference number: 2 (lower is better)
Translates to: MSPMSVETVPSQLEPTVSILHKA*ISAISS
Trigger: CGAGCTAATGGCTGAAATGCAGGCCTTATGCAAAAT...ACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACATTGGAGACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR-3UTR GCA 90 bp ATGAATTTATTGAACGACGTCCTCACCCCCACTCTCGCCCATGCCCCTTTGTTCAATGCCCTTTTAATTTaGCCATTTCTGCAACAGAAA +
Preference number: 2 (lower is better)
Translates to: MNLLNDVLTPTLAHAPLFNALLI*PFLQQK
Trigger: TTTCTGTTGCAGAAATGGGCAAATTAAAAGGGCATT...GAACAAAGGGGCATGGGCGAGAGTGGGGGTGAGGACGTCGTTCAATAAATTCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR GCA 90 bp CTGTCCAGGCACTGCAGGCTCCAATGGACATCTTCAAATCCAGAGAATGGAGGAAGAGCTATTATTATCTaGATTTCTTGCTACGTTCTC +
Preference number: 2 (lower is better)
Translates to: LSRHCRLQWTSSNPENGGRAIII*ISCYVL
Trigger: GAGAACGTAGCAAGAAATGCAGATAATAATAGCTCT...TCCTCCATTCTCTGGATTTGAAGATGTCCATTGGAGCCTGCAGTGCCTGGACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR CCA 90 bp GGCCACTCCAAAGGCTTTAATCTCACCAGTGTGCATTTTGCTGCCATGTCTATATGTTCTTGGCTCCAATaGAGGCAACATAAACATCAG +
Preference number: 2 (lower is better)
Translates to: GHSKGFNLTSVHFAAMSICSWLQ*RQHKHQ
Trigger: CTGATGTTTATGTTGCCTCCATTGGAGCCAAGAACA...TATAGACATGGCAGCAAAATGCACACTGGTGAGATTAAAGCCTTTGGAGTGGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CCA 90 bp TTTTGTAAAGCTCCAATGCCATTAAGATCAGCAGAAGGTCAAGAAGCAGCCAAAGTGAGAACCCAGCAATaGCTATGTGCACAGGACCTT +
Preference number: 2 (lower is better)
Translates to: FCKAPMPLRSAEGQEAAKVRTQQ*LCAQDL
Trigger: AAGGTCCTGTGCACATAGCCATTGCTGGGTTCTCAC...TTTGGCTGCTTCTTGACCTTCTGCTGATCTTAATGGCATTGGAGCTTTACAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp ACCTTTGATCAGACCCTTTTGCTAGTACAATGCCACGGAACTGTGACTATTCCTTACAGTCAGTTGCTCTaGGGACTACAGATGTTTTTG +
Preference number: 2 (lower is better)
Translates to: TFDQTLLLVQCHGTVTIPYSQLL*GLQMFL
Trigger: CAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTA...AGGAATAGTCACAGTTCCGTGGCATTGTACTAGCAAAAGGGTCTGATCAAAGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR TCA 90 bp TGGAGAATTGAGAACACTTCTTTGCTGTGGGAAGACAGCACTGTTTTTGTAAAGGCCACTTTTCCCTCCTaGGAAATCTATGACCTTCAC +
Preference number: 2 (lower is better)
Translates to: WRIENTSLLWEDSTVFVKATFPS*EIYDLH
Trigger: GTGAAGGTCATAGATTTCTCAGGAGGGAAAAGTGGC...CTTTACAAAAACAGTGCTGTCTTCCCACAGCAAAGAAGTGTTCTCAATTCTCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp TTCGCATACGCATTAAGAAGACTGTTCCAGCATCAATCTGTAAGTCCTTCTCAGCCTTTCCTGACCTTCTaGGGAATCTACTCATTACCA +
Preference number: 2 (lower is better)
Translates to: FAYALRRLFQHQSVSPSQPFLTF*GIYSLP
Trigger: TGGTAATGAGTAGATTCCTCAGAAGGTCAGGAAAGG...CTGAGAAGGACTTACAGATTGATGCTGGAACAGTCTTCTTAATGCGTATGCGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR-3UTR CCA 90 bp TGCCCTTTTAATTTGCCCATTTCTGCAACAGAAATGAGAGAACTTGAAGTTAGCGGACTTCAGAAACTTTaGGAGCAGAGCGGTAAGCAG +
Preference number: 2 (lower is better)
Translates to: CPFNLPISATEMRELEVSGLQKL*EQSGKQ
Trigger: CTGCTTACCGCTCTGCTCCCAAAGTTTCTGAAGTCC...GCTAACTTCAAGTTCTCTCATTTCTGTTGCAGAAATGGGCAAATTAAAAGGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR-3UTR CCA 90 bp AATGTCTGCTCGCTGTGGATCATTTTGTGCTTTCTGAGTGTAGAGATGAAAATGGTCCTTTTTCCAGGTTaGGTCGCCTTCATGAATTCC +
Preference number: 2 (lower is better)
Translates to: NVCSLWIILCFLSVEMKMVLFPG*VAFMNS
Trigger: GGAATTCATGAAGGCGACCCAACCTGGAAAAAGGAC...CATTTTCATCTCTACACTCAGAAAGCACAAAATGATCCACAGCGAGCAGACATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR-3UTR CCA 90 bp TATTACCTACCTTCTAGGACAGCTGGGAGGGTAAAACTCCATAAAAGGCACTTGATGAAGAGAGCCACATaGGATATAGGGCTAGACTTA +
Preference number: 2 (lower is better)
Translates to: YYLPSRTAGRVKLHKRHLMKRAT*DIGLDL
Trigger: TAAGTCTAGCCCTATATCCCATGTGGCTCTCTTCAT...CAAGTGCCTTTTATGGAGTTTTACCCTCCCAGCTGTCCTAGAAGGTAGGTAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR-3UTR CCA 90 bp TTCGCATACGCATTAAGAAGACTGTTCCAGCATCAATCTGTAAGTCCTTCTCAGCTCTCCCCTTTGAACTaGTCTAGATTTACCGACTCT +
Preference number: 2 (lower is better)
Translates to: FAYALRRLFQHQSVSPSQLSPLN*SRFTDS
Trigger: AGAGTCGGTAAATCTAGACCAGTTCAAAGGGGAGAG...CTGAGAAGGACTTACAGATTGATGCTGGAACAGTCTTCTTAATGCGTATGCGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR-3UTR GCA 90 bp AAAGAGGCCTCGGCTGCTCCTTGTGAGCCTAGACAGACACTGTTCCTTTTAAATTTCCTTTTCATGGGCTaGAGAACTAAGATGATAAAA +
Preference number: 2 (lower is better)
Translates to: KEASAAPCEPRQTLFLLNFLFMG*RTKMIK
Trigger: TTTTATCATCTTAGTTCTGCAGCCCATGAAAAGGAA...ATTTAAAAGGAACAGTGTCTGTCTAGGCTCACAAGGAGCAGCCGAGGCCTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR GCA 90 bp CAACTTCACCTTGTGAATGTCTCACACGACTTCACAGAAATGCACACCAGCAAGTTGTTGGCTGTCTTTTaGTTGTGCAATGTTTTCTCA +
Preference number: 2 (lower is better)
Translates to: QLHLVNVSHDFTEMHTSKLLAVF*LCNVFS
Trigger: TGAGAAAACATTGCACAAGCAAAAGACAGCCAACAA...CTTGCTGGTGTGCATTTCTGTGAAGTCGTGTGAGACATTCACAAGGTGAAGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CCA 90 bp GCTGTTATGCTCCAGCCAAGGAAAAGCAATAGCAAGTTAGGAAAAGCAACTTTTAATCCCTACAGATTCTaGCCTCTACTTAGGAAGTGC +
Preference number: 2 (lower is better)
Translates to: AVMLQPRKSNSKLGKATFNPYRF*PLLRKC
Trigger: GCACTTCCTAAGTAGAGGCCAGAATCTGTAGGGATT...AAAAGTTGCTTTTCCTAACTTGCTATTGCTTTTCCTTGGCTGGAGCATAACAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR CCA 90 bp GGCCACTCCAAAGGCTTTAATCTCACCAGTGTGCATTTTGCTGCCATGTCTATATGTGATCATGGTAGATaGAGAATTGAGAACACTTCT +
Preference number: 2 (lower is better)
Translates to: GHSKGFNLTSVHFAAMSICDHGR*RIENTS
Trigger: AGAAGTGTTCTCAATTCTCCATCTACCATGATCACA...TATAGACATGGCAGCAAAATGCACACTGGTGAGATTAAAGCCTTTGGAGTGGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CAA 90 bp TGTCACAAGATCCCCATGGCCAAAGTGAATAGTCCTTTTTCCAGGTaGGGTCGCCTTCATGAATTCCTATGCAAACAAATGTTTCTTTTT +
Preference number: 2 (lower is better)
Translates to: CHKIPMAKVNSPFSR*GRLHEFLCKQMFLF
Trigger: AAAAAGAAACATTTGTTTGCATAGGAATTCATGAAGGCGACCCAACCTGGAAAAAGGACTATTCACTTTGGCCATGGGGATCTTGTGACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR CAA 90 bp ACAGGCAATGGCATAGTTCTTGTGCCAATTCACTGGGTGTTCCTCTaGCAAGTACACAATCTCCTTATAAAGTTTATATGCATGCGTGTA +
Preference number: 2 (lower is better)
Translates to: TGNGIVLVPIHWVFL*QVHNLLIKFICMRV
Trigger: TACACGCATGCATATAAACTTTATAAGGAGATTGTGTACTTGCAAGAGGAACACCCAGTGAATTGGCACAAGAACTATGCCATTGCCTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR-3UTR TCA 90 bp GTGATCATGGTAGATGGAGAATTGAGAACACTTCTTTGCTGTGGGAAGACAGCAACATATCTCCCTAATTaGTGGGACTGGTTTCATTTA +
Preference number: 2 (lower is better)
Translates to: VIMVDGELRTLLCCGKTATYLPN*WDWFHL
Trigger: TAAATGAAACCAGTCCCATCAATTAGGGAGATATGT...TGCTGTCTTCCCACAGCAAAGAAGTGTTCTCAATTCTCCATCTACCATGATCAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp TTCGCATACGCATTAAGAAGACTGTTCCAGCATCAATCTGTAAGTCCTTCTCAGGAATCAGCTATTTTATaGAGAGAGCCACATGGGATA +
Preference number: 2 (lower is better)
Translates to: FAYALRRLFQHQSVSPSQESAIL*REPHGI
Trigger: TATCCCATGTGGCTCTCTTCATAAAATAGCTGATTC...CTGAGAAGGACTTACAGATTGATGCTGGAACAGTCTTCTTAATGCGTATGCGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR-3UTR GCA 90 bp GGCCACTCCAAAGGCTTTAATCTCACCAGTGTGCATTTTGCTGCCATGTCTATAGCTGTCTTTTGCTTGTaGAATGTTTTCTCACAATTA +
Preference number: 2 (lower is better)
Translates to: GHSKGFNLTSVHFAAMSIAVFCL*NVFSQL
Trigger: TAATTGTGAGAAAACATTGCACAAGCAAAAGACAGC...TATAGACATGGCAGCAAAATGCACACTGGTGAGATTAAAGCCTTTGGAGTGGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR GCA 90 bp AGAAGCAAGCGCTACTTAGCATACAGTAAACAAAGCAGAACATATCAGAAGTCTACAGAGGTGACAGAATaGTCTCTTGCTTTTGACAGG +
Preference number: 2 (lower is better)
Translates to: RSKRYLAYSKQSRTYQKSTEVTE*SLAFDR
Trigger: CCTGTCAAAAGCAAGAGAGCATTCTGTCACCTCTGT...AGACTTCTGATATGTTCTGCTTTGTTTACTGTATGCTAAGTAGCGCTTGCTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR-3UTR GCA 90 bp TCTATACATATACCTAAAGGTGTACTTGCATATATAAGAGCATGCATCCCTCCCTATTCAGAAGGAGCTTaGAGCTTCAGTTTTCCCAAG +
Preference number: 2 (lower is better)
Translates to: SIHIPKGVLAYIRACIPPYSEGA*SFSFPK
Trigger: CTTGGGAAAACTGAAGCTGCAAGCTCCTTCTGAATA...GGGAGGGATGCATGCTCTTATATATGCAAGTACACCTTTAGGTATATGTATAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR GCA 90 bp AGAAGCAAGCGCTACTTAGCATACAGTAAACAAAGCAGAACATATCAGAAGTCTAGGGGTGCTTTCAGTTaGATTCCCTTTTATGAGTTC +
Preference number: 2 (lower is better)
Translates to: RSKRYLAYSKQSRTYQKSRGAFS*IPFYEF
Trigger: GAACTCATAAAAGGGAATGCAACTGAAAGCACCCCT...AGACTTCTGATATGTTCTGCTTTGTTTACTGTATGCTAAGTAGCGCTTGCTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR-3UTR CCA 90 bp GCTGTTATGCTCCAGCCAAGGAAAAGCAATAGCAAGTTAGGAAAAGCAACTTTTCTCCTATCATTTCTTTaGAACCGTAGACAATTTCCC +
Preference number: 2 (lower is better)
Translates to: AVMLQPRKSNSKLGKATFLLSFL*NRRQFP
Trigger: GGGAAATTGTCTACGGTTCCAAAGAAATGATAGGAG...AAAAGTTGCTTTTCCTAACTTGCTATTGCTTTTCCTTGGCTGGAGCATAACAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR CCA 90 bp TTTTGTAAAGCTCCAATGCCATTAAGATCAGCAGAAGGTCAAGAAGCAGCCAAACATTTGAGCAACTGTTaGACAGACTGCAAATCCATT +
Preference number: 2 (lower is better)
Translates to: FCKAPMPLRSAEGQEAAKHLSNC*TDCKSI
Trigger: AATGGATTTGCAGTCTGTCCAACAGTTGCTCAAATG...TTTGGCTGCTTCTTGACCTTCTGCTGATCTTAATGGCATTGGAGCTTTACAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR TCA 90 bp GCTGTTATGCTCCAGCCAAGGAAAAGCAATAGCAAGTTAGGAAAAGCAACTTTTAACTGTTACAACTATTaGCACTCTTCAAAAGGTTCC +
Preference number: 2 (lower is better)
Translates to: AVMLQPRKSNSKLGKATFNCYNY*HSSKGS
Trigger: GGAACCTTTTGAAGAGTGTCAATAGTTGTAACAGTT...AAAAGTTGCTTTTCCTAACTTGCTATTGCTTTTCCTTGGCTGGAGCATAACAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR CCA 90 bp GCTGTTATGCTCCAGCCAAGGAAAAGCAATAGCAAGTTAGGAAAAGCAACTTTTGTCAGTGAAAGTTCTTaGCCCATGATTAAAAGTCTT +
Preference number: 2 (lower is better)
Translates to: AVMLQPRKSNSKLGKATFVSESS*PMIKSL
Trigger: AAGACTTTTAATCATGGGCCAAGAACTTTCACTGAC...AAAAGTTGCTTTTCCTAACTTGCTATTGCTTTTCCTTGGCTGGAGCATAACAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR CCA 90 bp AGAAGCAAGCGCTACTTAGCATACAGTAAACAAAGCAGAACATATCAGAAGTCTATTATAAACAGCTCATaGGCTCTTCAGGAAACGGTT +
Preference number: 2 (lower is better)
Translates to: RSKRYLAYSKQSRTYQKSIINSS*ALQETV
Trigger: AACCGTTTCCTGAAGAGCCCATGAGCTGTTTATAAT...AGACTTCTGATATGTTCTGCTTTGTTTACTGTATGCTAAGTAGCGCTTGCTTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR-3UTR TCA 90 bp GAAGATTTCGTGCAAACTGATCAATCACGTTATTGGTTCTTTGGTCACAAATGCCATATTTATTACCTGTaGAAGCAGTACTGTAGACAC +
Preference number: 2 (lower is better)
Translates to: EDFVQTDQSRYWFFGHKCHIYYL*KQYCRH
Trigger: GTGTCTACAGTACTGCTTTCACAGGTAATAAATATG...GCATTTGTGACCAAAGAACCAATAACGTGATTGATCAGTTTGCACGAAATCTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR-3UTR TCA 90 bp AGAAGCAAGCGCTACTTAGCATACAGTAAACAAAGCAGAACATATCAGAAGTCTATGCTCTCTTGCTTTTaGCAGGAATCAGCTATTTTA +
Preference number: 2 (lower is better)
Translates to: RSKRYLAYSKQSRTYQKSMLSCF*QESAIL
Trigger: TAAAATAGCTGATTCCTGTCAAAAGCAAGAGAGCAT...AGACTTCTGATATGTTCTGCTTTGTTTACTGTATGCTAAGTAGCGCTTGCTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR-3UTR GCA 90 bp TGCCCTTTTAATTTGCCCATTTCTGCAACAGAAATGAGAGAACTTGAAGTTAGCGACTACAGATGTTTTTaGATGCTTCTCATGGAAATG +
Preference number: 2 (lower is better)
Translates to: CPFNLPISATEMRELEVSDYRCF*MLLMEM
Trigger: CATTTCCATGAGAAGCATGCAAAAACATCTGTAGTC...GCTAACTTCAAGTTCTCTCATTTCTGTTGCAGAAATGGGCAAATTAAAAGGGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR-3UTR CCA 90 bp CTCTTGCTTTTGACAGGAATCAGCTATTTTATGAAGAGAGCCACATGGGATATAAATTTTCTGCATGGCTaGTTCCTTAATATTCAGGTT +
Preference number: 2 (lower is better)
Translates to: LLLLTGISYFMKRATWDINFLHG*FLNIQV
Trigger: AACCTGAATATTAAGGAACCAGCCATGCAGAAAATT...TATATCCCATGTGGCTCTCTTCATAAAATAGCTGATTCCTGTCAAAAGCAAGAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR CCA 72 bp GAGTGGGCTGGCCTTAGGGTCCAGGCAGCAGGGCACTaGAGTGTGTGGAGAGACAGACAGCTCTGCCGGCTC +
Preference number: 3 (lower is better)
Translates to: EWAGLRVQAAGH*SVWRDRQLCRL
Trigger: GAGCCGGCAGAGCTGTCTGTCTCTCCACACACTCCAGTGCCCTGCTGCCTGGACCCTAAGGCCAGCCCACTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR TCA 72 bp GTGTCGTCTGGTCTCCCCAGGTCCAGCGGGCGCGACTaGGGTAGGACGAGACAGGCAGGTAGACATAGGGCA +
Preference number: 3 (lower is better)
Translates to: VSSGLPRSSGRD*GRTRQAGRHRA
Trigger: TGCCCTATGTCTACCTGCCTGTCTCGTCCTACCTCAGTCGCGCCCGCTGGACCTGGGGAGACCAGACGACAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR CCA 72 bp ATGATGGCAGCCACAATGCCCTTGTCCTGTGCCCTCTaGAGTGGGCTGGCCTTAGGGTCCAGGCAGCAGGGC +
Preference number: 3 (lower is better)
Translates to: MMAATMPLSCAL*SGLALGSRQQG
Trigger: GCCCTGCTGCCTGGACCCTAAGGCCAGCCCACTCCAGAGGGCACAGGACAAGGGCATTGTGGCTGCCATCAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR GCA 72 bp GCAGGGCACTGGAGTGTGTGGAGAGACAGACAGCTCTaGCGGCTCCTACTTCCTCCTCGGGCTAACCTCCAG +
Preference number: 3 (lower is better)
Translates to: AGHWSVWRDRQL*RLLLPPRANLQ
Trigger: CTGGAGGTTAGCCCGAGGAGGAAGTAGGAGCCGGCAGAGCTGTCTGTCTCTCCACACACTCCAGTGCCCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR GCA 72 bp CCGAGGCCAGCGAGAACGGCCACCACCGCATTGCTCTaGAGCCAGAATCGTTCCACCACACCCATGAAAAGT +
Preference number: 3 (lower is better)
Translates to: PRPARTATTALL*SQNRSTTPMKS
Trigger: ACTTTTCATGGGTGTGGTGGAACGATTCTGGCTGCAGAGCAATGCGGTGGTGGCCGTTCTCGCTGGCCTCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR CCA 72 bp TTGGCTTTGTGGGGTTCCTGTAGATCTGCCAACCCATaGCACACCAGGGACACGGAGGAGGATGCTGGCCAA +
Preference number: 3 (lower is better)
Translates to: LALWGSCRSANP*HTRDTEEDAGQ
Trigger: TTGGCCAGCATCCTCCTCCGTGTCCCTGGTGTGCCATGGGTTGGCAGATCTACAGGAACCCCACAAAGCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CCA 72 bp CTCCTCGGGCTAACCTCCAGGCAGAAGTTGGCTTTGTaGGGTTCCTGTAGATCTGCCAACCCATGGCACACC +
Preference number: 3 (lower is better)
Translates to: LLGLTSRQKLAL*GSCRSANPWHT
Trigger: GGTGTGCCATGGGTTGGCAGATCTACAGGAACCCCACAAAGCCAACTTCTGCCTGGAGGTTAGCCCGAGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CCA 72 bp GCTGACAGCCACTCCAGGTTCCGAATCCCAGTACAGTaGAGCACTCGGTTAGTCTCAGACACAAGCGTGGCC +
Preference number: 3 (lower is better)
Translates to: ADSHSRFRIPVQ*STRLVSDTSVA
Trigger: GGCCACGCTTGTGTCTGAGACTAACCGAGTGCTCCACTGTACTGGGATTCGGAACCTGGAGTGGCTGTCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR CCA 72 bp AAGCTCTGTTCTCACCCAGGTCATCTGAATGGCCACTaGGAGGAAAGGAGGAAGGGAGGGAAGGAGGAGGGG +
Preference number: 3 (lower is better)
Translates to: KLCSHPGHLNGH*EERRKGGKEEG
Trigger: CCCCTCCTCCTTCCCTCCCTTCCTCCTTTCCTCCCAGTGGCCATTCAGATGACCTGGGTGAGAACAGAGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 72 bp AGGGAATTAAGACACTCAGGGTTTGCTGGGCAGTGGTaGCGAATGCCAGCATTCGGGAAGCAGAGGCAGACC +
Preference number: 3 (lower is better)
Translates to: RELRHSGFAGQW*RMPAFGKQRQT
Trigger: GGTCTGCCTCTGCTTCCCGAATGCTGGCATTCGCCACCACTGCCCAGCAAACCCTGAGTGTCTTAATTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 72 bp GACCTTCACCTCAGGCTGCAGGTGAGAACCCAGCAATaGCTATGTGCACAGGACCTTGAGCTTCCTGCCCTA +
Preference number: 3 (lower is better)
Translates to: DLHLRLQVRTQQ*LCAQDLELPAL
Trigger: TAGGGCAGGAAGCTCAAGGTCCTGTGCACATAGCCATTGCTGGGTTCTCACCTGCAGCCTGAGGTGAAGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 72 bp AGAAGGGAATTAAGACACTCAGGGTTTGCTGGGCAGTaGTGGCGAATGCCAGCATTCGGGAAGCAGAGGCAG +
Preference number: 3 (lower is better)
Translates to: RRELRHSGFAGQ*WRMPAFGKQRQ
Trigger: CTGCCTCTGCTTCCCGAATGCTGGCATTCGCCACCACTGCCCAGCAAACCCTGAGTGTCTTAATTCCCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR GCA 72 bp CTTCAGGGTCTATGCCGGTCCCTGGAAGGCGTAACATaGGCTCACAGGCAATGGCATAGTTCTTGTGCCAAT +
Preference number: 3 (lower is better)
Translates to: LQGLCRSLEGVT*AHRQWHSSCAN
Trigger: ATTGGCACAAGAACTATGCCATTGCCTGTGAGCGCATGTTACGCCTTCCAGGGACCGGCATAGACCCTGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR GCA 72 bp GCACAGGACCTTGAGCTTCCTGCCCTAGGTGAACCCTaGAAGTATGTGGAGATGCTGACAGGAAGGAGTCTT +
Preference number: 3 (lower is better)
Translates to: AQDLELPALGEP*KYVEMLTGRSL
Trigger: AAGACTCCTTCCTGTCAGCATCTCCACATACTTGCAGGGTTCACCTAGGGCAGGAAGCTCAAGGTCCTGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR GCA 72 bp AGGCAAGGGACTGAGGTGTGGGTGTGTGCAGCGATGTaGCAAAGGGAATGTGCTGCTAAACAACCCCTTTTG +
Preference number: 3 (lower is better)
Translates to: RQGTEVWVCAAM*QRECAAKQPLL
Trigger: CAAAAGGGGTTGTTTAGCAGCACATTCCCTTTGGCACATCGCTGCACACACCCACACCTCAGTCCCTTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 72 bp TCCAGAAAACCAGATATGGAGATGCAGGCACCTCGGTaGGTGGAAACTAGTGACCGTGCGCTGAGAGGAAGT +
Preference number: 3 (lower is better)
Translates to: SRKPDMEMQAPR*VETSDRALRGS
Trigger: ACTTCCTCTCAGCGCACGGTCACTAGTTTCCACCCACCGAGGTGCCTGCATCTCCATATCTGGTTTTCTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 72 bp TCAAGAAGCAGCCAAAGAAGGCAAGGGACTGAGGTGTaGGTGTGTGCAGCGATGTGCCAAAGGGAATGTGCT +
Preference number: 3 (lower is better)
Translates to: SRSSQRRQGTEV*VCAAMCQRECA
Trigger: AGCACATTCCCTTTGGCACATCGCTGCACACACCCACACCTCAGTCCCTTGCCTTCTTTGGCTGCTTCTTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CAA 90 bp TACCGACTCTCTCCAATAAAACAGGGCAGTGGCATATCACTTCCAGGATTAGGTCAGGGTCCTGAGAAGTaGCAACCCTGGCCCCCACCT +
Preference number: 3 (lower is better)
Translates to: YRLSPIKQGSGISLPGLGQGPEK*QPWPPP
Trigger: AGGTGGGGGCCAGGGTTGCAACTTCTCAGGACCCTG...ACCTAATCCTGGAAGTGATATGCCACTGCCCTGTTTTATTGGAGAGAGTCGGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR TCA 72 bp GACATGTGTCAAGGCTACCTGAGATCAGGGGGCCATTaGGGAACCCAAGTAGTGGTTGTAAGGAGAGCTAGG +
Preference number: 3 (lower is better)
Translates to: DMCQGYLRSGGH*GTQVVVVRRAR
Trigger: CCTAGCTCTCCTTACAACCACTACTTGGGTTCCTCAATGGCCCCCTGATCTCAGGTAGCCTTGACACATGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR GCA 72 bp AGAATACTACAGAAGCAAGCAAGGGTTCTTTGTTGGTaGTCTGTGGAATCAGGGCCCGCTTTCCAGCAGGGC +
Preference number: 3 (lower is better)
Translates to: RILQKQARVLCW*SVESGPAFQQG
Trigger: GCCCTGCTGGAAAGCGGGCCCTGATTCCACAGAGCACCAACAAAGAACCCTTGCTTGCTTCTGTAGTATTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 72 bp AAGGCACAGAGGCTTCCTCAGAGCCTTCCTAAGCTCTaGACTCAGAACTTCAGGCTTCCTGAGAAGCTCTGT +
Preference number: 3 (lower is better)
Translates to: KAQRLPQSLPKL*TQNFRLPEKLC
Trigger: ACAGAGCTTCTCAGGAAGCCTGAAGTTCTGAGTCCAGAGCTTAGGAAGGCTCTGAGGAAGCCTCTGTGCCTT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CAA 90 bp ACTCATGTGCAAAGCACACTCGGCAGCGGACATGCCTACTACATGCTGATACACCAAATTCAGCTCGAATaGTGCAGTCAAGGCCCTGTC +
Preference number: 3 (lower is better)
Translates to: THVQSTLGSGHAYYMLIHQIQLE*CSQGPV
Trigger: GACAGGGCCTTGACTGCACAATTCGAGCTGAATTTG...GTGTATCAGCATGTAGTAGGCATGTCCGCTGCCGAGTGTGCTTTGCACATGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR TCA 72 bp ATGAAAGGGAGCCATGCAAGCTCCACGGGAGACCTTTaGTCAGACCCTTTTGCTAGTACAATGCCACGGAAC +
Preference number: 3 (lower is better)
Translates to: MKGSHASSTGDL*SDPFASTMPRN
Trigger: GTTCCGTGGCATTGTACTAGCAAAAGGGTCTGATCAAAGGTCTCCCGTGGAGCTTGCATGGCTCCCTTTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR TCA 72 bp ACTCAAAAGCCCTCGGCACTGGTCCTTAACCGCTTATaGCATCACAAAGGACACTCCGGACAGATGCCTACA +
Preference number: 3 (lower is better)
Translates to: TQKPSALVLNRL*HHKGHSGQMPT
Trigger: TGTAGGCATCTGTCCGGAGTGTCCTTTGTGATGTCATAAGCGGTTAAGGACCAGTGCCGAGGGCTTTTGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR GCA 72 bp TTTATTGAACGACGTCCTCACCCCCACTCTCGCCCATaGCCCTTTGTTCATCTGGGCAGCTACTTCCTAATT +
Preference number: 3 (lower is better)
Translates to: FIERRPHPHSRP*PFVHLGSYFLI
Trigger: AATTAGGAAGTAGCTGCCCAGATGAACAAAGGGGCATGGGCGAGAGTGGGGGTGAGGACGTCGTTCAATAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR GCA 72 bp CGGGAGACCTTTGATCAGACCCTTTTGCTAGTACAATaGCACGGAACTGTGACTATTCCTGGTAAGGGGCCT +
Preference number: 3 (lower is better)
Translates to: RETFDQTLLLVQ*HGTVTIPGKGP
Trigger: AGGCCCCTTACCAGGAATAGTCACAGTTCCGTGGCATTGTACTAGCAAAAGGGTCTGATCAAAGGTCTCCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR CAA 90 bp ACCTTTGATCAGACCCTTTTGCTAGTACAATGCCACGGAACTGTGACTATTCCTCTCGCCCATGCCCCTTaGTTCATCTGGGCAGCTACT +
Preference number: 3 (lower is better)
Translates to: TFDQTLLLVQCHGTVTIPLAHAP*FIWAAT
Trigger: AGTAGCTGCCCAGATGAACAAAGGGGCATGGGCGAG...AGGAATAGTCACAGTTCCGTGGCATTGTACTAGCAAAAGGGTCTGATCAAAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR TCA 72 bp GTTACAACTATTGACACTCTTCAAAAGGTTCCGCTCTaGACCCTGTCCAGGCACTGCAGGCTCCAATGGACA +
Preference number: 3 (lower is better)
Translates to: VTTIDTLQKVPL*TLSRHCRLQWT
Trigger: TGTCCATTGGAGCCTGCAGTGCCTGGACAGGGTTCAGAGCGGAACCTTTTGAAGAGTGTCAATAGTTGTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR TCA 72 bp GCTATGTGCATGTGTTCCATGCCAGTCTCGTTTAACTaGCAGACACAGGGCCCAGTGAGAGGAAAAGCCTTT +
Preference number: 3 (lower is better)
Translates to: AMCMCSMPVSFN*QTQGPVRGKAF
Trigger: AAAGGCTTTTCCTCTCACTGGGCCCTGTGTCTGTCAGTTAAACGAGACTGGCATGGAACACATGCACATAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 72 bp TTTAGAGGCACCCTTGACTTGAAGCACCATCATGACTaGCATTTCACTCAAAAGCCCTCGGCACTGGTCCTT +
Preference number: 3 (lower is better)
Translates to: FRGTLDLKHHHD*HFTQKPSALVL
Trigger: AAGGACCAGTGCCGAGGGCTTTTGAGTGAAATGCCAGTCATGATGGTGCTTCAAGTCAAGGGTGCCTCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CCA 72 bp CTGCAGGCTCCAATGGACATCTTCAAATCCAGAGAATaGAGGAGCAAGAGCTTCCCCTGTGTGATGCCAAAA +
Preference number: 3 (lower is better)
Translates to: LQAPMDIFKSRE*RSKSFPCVMPK
Trigger: TTTTGGCATCACACAGGGGAAGCTCTTGCTCCTCCATTCTCTGGATTTGAAGATGTCCATTGGAGCCTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CCA 72 bp GTAAGAATACTACAGAAGCAAGCAAGGGTTCTTTGTTaGTGCTCTGTGGAATCAGGGCCCGCTTTCCAGCAG +
Preference number: 3 (lower is better)
Translates to: VRILQKQARVLC*CSVESGPAFQQ
Trigger: CTGCTGGAAAGCGGGCCCTGATTCCACAGAGCACCAACAAAGAACCCTTGCTTGCTTCTGTAGTATTCTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CAA 90 bp GGCCACTCCAAAGGCTTTAATCTCACCAGTGTGCATTTTGCTGCCATGTCTATAGAGATGGTAAAGGGCTaGCCACACAAGCAAGGAGAG +
Preference number: 3 (lower is better)
Translates to: GHSKGFNLTSVHFAAMSIEMVKG*PHKQGE
Trigger: CTCTCCTTGCTTGTGTGGCAAGCCCTTTACCATCTC...TATAGACATGGCAGCAAAATGCACACTGGTGAGATTAAAGCCTTTGGAGTGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR TCA 72 bp CAAGGCCCTGTCAAGCTTTTAGAGGCACCCTTGACTTaGAGCACCATCATGACTGGCATTTCACTCAAAAGC +
Preference number: 3 (lower is better)
Translates to: QGPVKLLEAPLT*STIMTGISLKS
Trigger: GCTTTTGAGTGAAATGCCAGTCATGATGGTGCTTCAAGTCAAGGGTGCCTCTAAAAGCTTGACAGGGCCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR TCA 72 bp AGGCACCAATTTGTCACAAGATCCCCATGGCCAAAGTaGATAGTCCTTTTTCCAGGTTGGGTCGCCTTCATG +
Preference number: 3 (lower is better)
Translates to: RHQFVTRSPWPK*IVLFPGWVAFM
Trigger: CATGAAGGCGACCCAACCTGGAAAAAGGACTATTCACTTTGGCCATGGGGATCTTGTGACAAATTGGTGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR GCA 72 bp ATGCGTGTAGAGTTGTGCTTTCACATCTGCAGGAACTaGAGCAGACTCTGCCAGACTGAAGATGAAGAATGG +
Preference number: 3 (lower is better)
Translates to: MRVELCFHICRN*SRLCQTEDEEW
Trigger: CCATTCTTCATCTTCAGTCTGGCAGAGTCTGCTGCAGTTCCTGCAGATGTGAAAGCACAACTCTACACGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR CCA 72 bp AGAGGTCCTGAGTTCAATTCCCAGCAACCACAATGGTaGCTTACAACCATCTGTAATGGGATCCAATGCCGT +
Preference number: 3 (lower is better)
Translates to: RGPEFNSQQPQW*LTTICNGIQCR
Trigger: ACGGCATTGGATCCCATTACAGATGGTTGTAAGCCACCATTGTGGTTGCTGGGAATTGAACTCAGGACCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 72 bp TCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACAATaGTGGCTTACAACCATCTGTAATGGGATCCAATGC +
Preference number: 3 (lower is better)
Translates to: SRGPEFNSQQPQ*WLTTICNGIQC
Trigger: GCATTGGATCCCATTACAGATGGTTGTAAGCCACCATTGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CAA 90 bp AATGGAGTCTTCATTCTTGCTTGCCACATCTCCTCATTGGCCACCGATTCCCAAAGTCCTTTTTCCAGGTaGGGTCGCCTTCATGAATTC +
Preference number: 3 (lower is better)
Translates to: NGVFILACHISSLATDSQSPFSR*GRLHEF
Trigger: GAATTCATGAAGGCGACCCAACCTGGAAAAAGGACT...TTGGGAATCGGTGGCCAATGAGGAGATGTGGCAAGCAAGAATGAAGACTCCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR-3UTR CAA 90 bp CACCTTTCTCTATCTTTCATGATGTTGGGACATCTGGACGGTGCTCACCGAGTGGTATTCAGAAGGAGCTaGCAGCTTCAGTTTTCCCAA +
Preference number: 3 (lower is better)
Translates to: HLSLSFMMLGHLDGAHRVVFRRS*QLQFSQ
Trigger: TTGGGAAAACTGAAGCTGCAAGCTCCTTCTGAATAC...CACTCGGTGAGCACCGTCCAGATGTCCCAACATCATGAAAGATAGAGAAAGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CAA 90 bp CACCTTTCTCTATCTTTCATGATGTTGGGACATCTGGACGGTGCTCACCGAGTGCAAAATGGCCAACATTaGAGCAACTGTTGGACAGAC +
Preference number: 3 (lower is better)
Translates to: HLSLSFMMLGHLDGAHRVQNGQH*SNCWTD
Trigger: GTCTGTCCAACAGTTGCTCAAATGTTGGCCATTTTG...CACTCGGTGAGCACCGTCCAGATGTCCCAACATCATGAAAGATAGAGAAAGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CAA 90 bp GGCCACTCCAAAGGCTTTAATCTCACCAGTGTGCATTTTGCTGCCATGTCTATAGCAAGCAAGGGTTCTTaGTTGGTGCTCTGTGGAATC +
Preference number: 3 (lower is better)
Translates to: GHSKGFNLTSVHFAAMSIASKGS*LVLCGI
Trigger: GATTCCACAGAGCACCAACAAAGAACCCTTGCTTGC...TATAGACATGGCAGCAAAATGCACACTGGTGAGATTAAAGCCTTTGGAGTGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CAA 90 bp TTCGCATACGCATTAAGAAGACTGTTCCAGCATCAATCTGTAAGTCCTTCTCAGACCCTGGCCCCCACCTaGTCTTGTGTTAGTGAATCC +
Preference number: 3 (lower is better)
Translates to: FAYALRRLFQHQSVSPSQTLAPT*SCVSES
Trigger: GGATTCACTAACACAAGACAAGGTGGGGGCCAGGGT...CTGAGAAGGACTTACAGATTGATGCTGGAACAGTCTTCTTAATGCGTATGCGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR-3UTR CAA 90 bp CCAGGCACTGCAGGCTCCAATGGACATCTTCAAATCCAGAGAATGGAGGAGCAAATGCAGCTTCTGTACTaGAAGGAAAAATTCTTGGAC +
Preference number: 3 (lower is better)
Translates to: PGTAGSNGHLQIQRMEEQMQLLY*KEKFLD
Trigger: GTCCAAGAATTTTTCCTTCAAGTACAGAAGCTGCAT...TTGCTCCTCCATTCTCTGGATTTGAAGATGTCCATTGGAGCCTGCAGTGCCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR CAA 90 bp ACCTTTGATCAGACCCTTTTGCTAGTACAATGCCACGGAACTGTGACTATTCCTGTAAGGGGCCTTTTCTaGCTGAATGACTCACCAGTG +
Preference number: 3 (lower is better)
Translates to: TFDQTLLLVQCHGTVTIPVRGLF*LNDSPV
Trigger: CACTGGTGAGTCATTCAGCAAGAAAAGGCCCCTTAC...AGGAATAGTCACAGTTCCGTGGCATTGTACTAGCAAAAGGGTCTGATCAAAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR CAA 90 bp AAAGAGGCCTCGGCTGCTCCTTGTGAGCCTAGACAGACACTGTTCCTTTTAAATTCTCTGAAGAAATGCTaGGATGTTACTGCCCTTCTC +
Preference number: 3 (lower is better)
Translates to: KEASAAPCEPRQTLFLLNSLKKC*DVTALL
Trigger: GAGAAGGGCAGTAACATCCAAGCATTTCTTCAGAGA...ATTTAAAAGGAACAGTGTCTGTCTAGGCTCACAAGGAGCAGCCGAGGCCTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR CAA 90 bp TGCACACCAGCAAGAAAGAGGCTGTGGGCCACTCCAAAGGCTTTAATCTCACCAATGGTAGATGGAGAATaGAGAACACTTCTTTGCTGT +
Preference number: 3 (lower is better)
Translates to: CTPARKRLWATPKALISPMVDGE*RTLLCC
Trigger: ACAGCAAAGAAGTGTTCTCAATTCTCCATCTACCAT...TGGTGAGATTAAAGCCTTTGGAGTGGCCCACAGCCTCTTTCTTGCTGGTGTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR TCA 72 bp CTATCTCTGAGTTTAAGGCCAACCTGGTCTACAGAGTaGGTTCCAGAAAAGCCTGGGCTACACAGAGAAACT +
Preference number: 3 (lower is better)
Translates to: LSLSLRPTWSTE*VPEKPGLHRET
Trigger: AGTTTCTCTGTGTAGCCCAGGCTTTTCTGGAACTCACTCTGTAGACCAGGTTGGCCTTAAACTCAGAGATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR TCA 72 bp CCGCTTTTCCTGTTAGCCAGCAAAATGGCCAACATTTaGGCAACTGTTGGACAGACTGCAAATCCATTGACC +
Preference number: 3 (lower is better)
Translates to: PLFLLASKMANI*ATVGQTANPLT
Trigger: GGTCAATGGATTTGCAGTCTGTCCAACAGTTGCTCAAATGTTGGCCATTTTGCTGGCTAACAGGAAAAGCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR GCA 72 bp TGGCAACGTGAGATAAACAGGATTTTGCATAAGGCCTaGATTTCAGCCATTAGCTCGTTTCTGCTGCACGTG +
Preference number: 3 (lower is better)
Translates to: WQREINRILHKA*ISAISSFLLHV
Trigger: CACGTGCAGCAGAAACGAGCTAATGGCTGAAATGCAGGCCTTATGCAAAATCCTGTTTATCTCACGTTGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR GCA 72 bp CCCAACCAGCAAAGAGCATTGTTCTCTCTTTTGTTCTaGCCAAGGCCTGAAAGCAGTCGACAAAAGATGACA +
Preference number: 3 (lower is better)
Translates to: PNQQRALFSLLF*PRPESSRQKMT
Trigger: TGTCATCTTTTGTCGACTGCTTTCAGGCCTTGGGCAGAACAAAAGAGAGAACAATGCTCTTTGCTGGTTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 72 bp ATCATGACTGGCATTTCACTCAAAAGCCCTCGGCACTaGTCCTTAACCGCTTATGACATCACAAAGGACACT +
Preference number: 3 (lower is better)
Translates to: IMTGISLKSPRH*SLTAYDITKDT
Trigger: AGTGTCCTTTGTGATGTCATAAGCGGTTAAGGACCAGTGCCGAGGGCTTTTGAGTGAAATGCCAGTCATGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CCA 72 bp GTTAGCCAGCAAAATGGCCAACATTTGAGCAACTGTTaGACAGACTGCAAATCCATTGACCCTCACAGTCTC +
Preference number: 3 (lower is better)
Translates to: VSQQNGQHLSNC*TDCKSIDPHSL
Trigger: GAGACTGTGAGGGTCAATGGATTTGCAGTCTGTCCAACAGTTGCTCAAATGTTGGCCATTTTGCTGGCTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CAA 90 bp GGTAAGAAGTGGGACGTGCTCAGTGCTTTGCTAGTGATGATGGCAGCCACAATGGAGATTTCTACTTTTTaGATGCAGCTTCTGTACTTG +
Preference number: 3 (lower is better)
Translates to: GKKWDVLSALLVMMAATMEISTF*MQLLYL
Trigger: CAAGTACAGAAGCTGCATCAAAAAAGTAGAAATCTC...CATTGTGGCTGCCATCATCACTAGCAAAGCACTGAGCACGTCCCACTTCTTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR CAA 90 bp ATGAATTTATTGAACGACGTCCTCACCCCCACTCTCGCCCATGCCCCTTTGTTCAAATGCCCTTTTAATTaGCCCATTTCTGCAACAGAA +
Preference number: 3 (lower is better)
Translates to: MNLLNDVLTPTLAHAPLFKCPFN*PISATE
Trigger: TTCTGTTGCAGAAATGGGCAAATTAAAAGGGCATTT...GAACAAAGGGGCATGGGCGAGAGTGGGGGTGAGGACGTCGTTCAATAAATTCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR-3UTR CAA 90 bp TTGCCACATCTCCTCATTGGCCACCGATTCCCAAGAAGATGGACCAAATCTTTCGCAAGAGCTTGGATATaGAATGAAAGTTCGGTCTTC +
Preference number: 3 (lower is better)
Translates to: LPHLLIGHRFPRRWTKSFARAWI*NESSVF
Trigger: GAAGACCGAACTTTCATTCAATATCCAAGCTCTTGC...GAAAGATTTGGTCCATCTTCTTGGGAATCGGTGGCCAATGAGGAGATGTGGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR GCA 72 bp GAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTaGTCTGAGGACTACAGATGTTTTTGCATGCTTCTC +
Preference number: 3 (lower is better)
Translates to: ETVPSQLEPTVS*SEDYRCFCMLL
Trigger: GAGAAGCATGCAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR GCA 72 bp ACCGCTTATGACATCACAAAGGACACTCCGGACAGATaGCTACATGGCATCCTGCAGCATTTTAAAAGAGAA +
Preference number: 3 (lower is better)
Translates to: TAYDITKDTPDR*LHGILQHFKRE
Trigger: TTCTCTTTTAAAATGCTGCAGGATGCCATGTAGGCATCTGTCCGGAGTGTCCTTTGTGATGTCATAAGCGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR GCA 72 bp TTTATATGCATGCGTGTAGAGTTGTGCTTTCACATCTaGAGGAACTGCAGCAGACTCTGCCAGACTGAAGAT +
Preference number: 3 (lower is better)
Translates to: FICMRVELCFHI*RNCSRLCQTED
Trigger: ATCTTCAGTCTGGCAGAGTCTGCTGCAGTTCCTGCAGATGTGAAAGCACAACTCTACACGCATGCATATAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR GCA 72 bp TTCTCTATCTTTCATGATGTTGGGACATCTGGACGGTaGTCACCGAGTGTTTTGTTGGCTGTCTTTTGCTTG +
Preference number: 3 (lower is better)
Translates to: FSIFHDVGTSGR*SPSVLLAVFCL
Trigger: CAAGCAAAAGACAGCCAACAAAACACTCGGTGAGCACCGTCCAGATGTCCCAACATCATGAAAGATAGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 72 bp AAAGGGAAAGGCGGATATAACCTCCTATCATTTCTTTaGAACCGTAGACAATTTCCCAGTGCTTCCTCCCAG +
Preference number: 3 (lower is better)
Translates to: KGKGGYNLLSFL*NRRQFPSASSQ
Trigger: CTGGGAGGAAGCACTGGGAAATTGTCTACGGTTCCAAAGAAATGATAGGAGGTTATATCCGCCTTTCCCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CCA 72 bp CCTCTCATCTGCTTTCTCTGCTGTGATCATGGTAGATaGAGAATTGAGAACACTTCTTTGCTGTGGGAAGAC +
Preference number: 3 (lower is better)
Translates to: PLICFLCCDHGR*RIENTSLLWED
Trigger: GTCTTCCCACAGCAAAGAAGTGTTCTCAATTCTCCATCTACCATGATCACAGCAGAGAAAGCAGATGAGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CAA 90 bp CCAATAAGCATGGAGACATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCATGCAGCTTCTGTACTaGAAGGAAAAATTCTTGGAC +
Preference number: 3 (lower is better)
Translates to: PISMETCLQCLWRQFLLSMQLLY*KEKFLD
Trigger: GTCCAAGAATTTTTCCTTCAAGTACAGAAGCTGCAT...GCTGAGAAGGAACTGTCTCCACAGACATTGGAGACATGTCTCCATGCTTATTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR-3UTR CAA 90 bp TGGAGAATTGAGAACACTTCTTTGCTGTGGGAAGACAGCACTGTTTTTGTAAAGCAGACTGCAAATCCATaGACCCTCACAGTCTCACCA +
Preference number: 3 (lower is better)
Translates to: WRIENTSLLWEDSTVFVKQTANP*TLTVSP
Trigger: TGGTGAGACTGTGAGGGTCAATGGATTTGCAGTCTG...CTTTACAAAAACAGTGCTGTCTTCCCACAGCAAAGAAGTGTTCTCAATTCTCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CAA 90 bp GCAGCTTCTTTTAAATCCCTTTATTTTGGAAAGGTTGGAGAATTACAGCAGTGTGCAAGGAGAGCTGACTaGCTCCCTAGCACTTATGCG +
Preference number: 3 (lower is better)
Translates to: AASFKSLYFGKVGELQQCARRAD*LPSTYA
Trigger: CGCATAAGTGCTAGGGAGCAAGTCAGCTCTCCTTGC...ACACTGCTGTAATTCTCCAACCTTTCCAAAATAAAGGGATTTAAAAGAAGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR TCA 72 bp AGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTaGGGACTACAGATGTTTTTGCATGCTTCTCATGGA +
Preference number: 3 (lower is better)
Translates to: SSFSARTYSQLL*GLQMFLHASHG
Trigger: TCCATGAGAAGCATGCAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR TCA 72 bp AGATGGCTCTTGTGCGTTCAATCCACTCCTCTGGGTTaGATACAATCTTTGAAGGCACCAATTTGTCACAAG +
Preference number: 3 (lower is better)
Translates to: RWLLCVQSTPLG*IQSLKAPICHK
Trigger: CTTGTGACAAATTGGTGCCTTCAAAGATTGTATTCAACCCAGAGGAGTGGATTGAACGCACAAGAGCCATCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR TCA 72 bp CAATGGAGGCAACATAAACATCAGCGACATGCCACTTaGTGTGCGTTTTCATGCAGTATTCAGAAGGAGCTT +
Preference number: 3 (lower is better)
Translates to: QWRQHKHQRHAT*CAFSCSIQKEL
Trigger: AAGCTCCTTCTGAATACTGCATGAAAACGCACATCAAGTGGCATGTCGCTGATGTTTATGTTGCCTCCATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR TCA 72 bp TCTGTAATGGGATCCAATGCCGTCTTCTGGTGCATCTaGACAGAGGGACAACGTACTCCTATACATAAAGTA +
Preference number: 3 (lower is better)
Translates to: SVMGSNAVFWCI*TEGQRTPIHKV
Trigger: TACTTTATGTATAGGAGTACGTTGTCCCTCTGTTCAGATGCACCAGAAGACGGCATTGGATCCCATTACAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR GCA 72 bp CTCCTTATAAAGTTTATATGCATGCGTGTAGAGTTGTaGTTTCACATCTGCAGGAACTGCAGCAGACTCTGC +
Preference number: 3 (lower is better)
Translates to: LLIKFICMRVEL*FHICRNCSRLC
Trigger: GCAGAGTCTGCTGCAGTTCCTGCAGATGTGAAAGCACAACTCTACACGCATGCATATAAACTTTATAAGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR CCA 72 bp CAAATGTATAGATGGCAAACTCTGAGACTGAGAAGCTaGAGAGAGGGTAGTATGGTTAGGCTTCTTTCTGGT +
Preference number: 3 (lower is better)
Translates to: QMYRWQTLRLRS*REGSMVRLLSG
Trigger: ACCAGAAAGAAGCCTAACCATACTACCCTCTCTCCAGCTTCTCAGTCTCAGAGTTTGCCATCTATACATTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 72 bp CACCGCCTCAAGAATATAGATTGCTTCTTCCTTTCGTaGCAACCCCCTGTCCAAATTCTTTTTAAGCTGTCA +
Preference number: 3 (lower is better)
Translates to: HRLKNIDCFFLS*QPPVQILFKLS
Trigger: TGACAGCTTAAAAAGAATTTGGACAGGGGGTTGCCACGAAAGGAAGAAGCAATCTATATTCTTGAGGCGGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR TCA 72 bp AAAAGAGAATTAGTGGTTTTAATTATGGTCGTGGTATaGAAGGGAGCCATGCAAGCTCCACGGGAGACCTTT +
Preference number: 3 (lower is better)
Translates to: KRELVVLIMVVV*KGAMQAPRETF
Trigger: AAAGGTCTCCCGTGGAGCTTGCATGGCTCCCTTTCATACCACGACCATAATTAAAACCACTAATTCTCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR GCA 72 bp CCTACAGTCAGTTGCTCTGAGGACTACAGATGTTTTTaGATGCTTCTCATGGAAATGCTAATTTGGCAACGT +
Preference number: 3 (lower is better)
Translates to: PTVSCSEDYRCF*MLLMEMLIWQR
Trigger: ACGTTGCCAAATTAGCATTTCCATGAGAAGCATGCAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR GCA 72 bp AGACACACATTTGTCTACCCTCTCATCTGCTTTCTCTaGTGTGATCATGGTAGATGGAGAATTGAGAACACT +
Preference number: 3 (lower is better)
Translates to: RHTFVYPLICFL*CDHGRWRIENT
Trigger: AGTGTTCTCAATTCTCCATCTACCATGATCACAGCAGAGAAAGCAGATGAGAGGGTAGACAAATGTGTGTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CCA 72 bp CATGGTAGATGGAGAATTGAGAACACTTCTTTGCTGTaGGAAGACAGCACTGTTTTTGTAAAGCTCCAATGC +
Preference number: 3 (lower is better)
Translates to: HGRWRIENTSLL*EDSTVFVKLQC
Trigger: GCATTGGAGCTTTACAAAAACAGTGCTGTCTTCCCACAGCAAAGAAGTGTTCTCAATTCTCCATCTACCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CAA 90 bp TCTATACATATACCTAAAGGTGTACTTGCATATATAAGAGCATGCATCCCTCCCCGGATGCTACACATGTaGCTTTTAGAGCAGTTCCAG +
Preference number: 3 (lower is better)
Translates to: SIHIPKGVLAYIRACIPPRMLHM*LLEQFQ
Trigger: CTGGAACTGCTCTAAAAGCAACATGTGTAGCATCCG...GGGAGGGATGCATGCTCTTATATATGCAAGTACACCTTTAGGTATATGTATAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CAA 90 bp GTGATCATGGTAGATGGAGAATTGAGAACACTTCTTTGCTGTGGGAAGACAGCACTAGAATCAGAATCATaGGTAGGACACTGGATAGTA +
Preference number: 3 (lower is better)
Translates to: VIMVDGELRTLLCCGKTALESES*VGHWIV
Trigger: TACTATCCAGTGTCCTACCAATGATTCTGATTCTAG...TGCTGTCTTCCCACAGCAAAGAAGTGTTCTCAATTCTCCATCTACCATGATCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR TCA 72 bp TCAAGAATTGGTTTTTCTGAACCAATAAAGGCTCTCTaGAGAAATGCTTGGATGTTACTGCCCTTCTCTCCC +
Preference number: 3 (lower is better)
Translates to: SRIGFSEPIKAL*RNAWMLLPFSP
Trigger: GGGAGAGAAGGGCAGTAACATCCAAGCATTTCTTCAGAGAGCCTTTATTGGTTCAGAAAAACCAATTCTTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR TCA 72 bp AAGCAAAGAATAATGAATACAGGCAAAGCATTCCAGTaGAAAGCCATACTACTGATGACTTCCGCCTGTCCT +
Preference number: 3 (lower is better)
Translates to: KQRIMNTGKAFQ*KAILLMTSACP
Trigger: AGGACAGGCGGAAGTCATCAGTAGTATGGCTTTTCACTGGAATGCTTTGCCTGTATTCATTATTCTTTGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR TCA 72 bp ATTATAAACAGCTCATGGGCTCTTCAGGAAACGGTTTaGCTGTTCCATTACAGAACCATTCTGAAAACACGG +
Preference number: 3 (lower is better)
Translates to: IINSSWALQETV*LFHYRTILKTR
Trigger: CCGTGTTTTCAGAATGGTTCTGTAATGGAACAGTCAAACCGTTTCCTGAAGAGCCCATGAGCTGTTTATAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR-3UTR CAA 90 bp CTAGAACCTACAGTCAGTTGCTCTGAGGACTACAGATGTTTTTGCATGCTTCTCGAGATTTCTACTTTTTaGATGCAGCTTCTGTACTTG +
Preference number: 3 (lower is better)
Translates to: LEPTVSCSEDYRCFCMLLEISTF*MQLLYL
Trigger: CAAGTACAGAAGCTGCATCAAAAAAGTAGAAATCTC...GAGAAGCATGCAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTAGGTTCTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR-3UTR CAA 90 bp TTTTGTAAAGCTCCAATGCCATTAAGATCAGCAGAAGGTCAAGAAGCAGCCAAAACATTTGAGCAACTGTaGGACAGACTGCAAATCCAT +
Preference number: 3 (lower is better)
Translates to: FCKAPMPLRSAEGQEAAKTFEQL*DRLQIH
Trigger: ATGGATTTGCAGTCTGTCCAACAGTTGCTCAAATGT...TTTGGCTGCTTCTTGACCTTCTGCTGATCTTAATGGCATTGGAGCTTTACAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CAA 90 bp GCAGCTTCTTTTAAATCCCTTTATTTTGGAAAGGTTGGAGAATTACAGCAGTGTTCACCGAGTGTTTTGTaGGCTGTCTTTTGCTTGTGC +
Preference number: 3 (lower is better)
Translates to: AASFKSLYFGKVGELQQCSPSVL*AVFCLC
Trigger: GCACAAGCAAAAGACAGCCAACAAAACACTCGGTGA...ACACTGCTGTAATTCTCCAACCTTTCCAAAATAAAGGGATTTAAAAGAAGCTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR TCA 72 bp AACCAAACCAGGGACTTGTTTCTAGACTCAGATATGTaGAAAGTATGCCCTAGCTTAATCTGTGTGAAACCT +
Preference number: 3 (lower is better)
Translates to: NQTRDLFLDSDM*KVCPSLICVKP
Trigger: AGGTTTCACACAGATTAAGCTAGGGCATACTTTTCACATATCTGAGTCTAGAAACAAGTCCCTGGTTTGGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR CCA 72 bp AGATGTTTTTGCATGCTTCTCATGGAAATGCTAATTTaGCAACGTGAGATAAACAGGATTTTGCATAAGGCC +
Preference number: 3 (lower is better)
Translates to: RCFCMLLMEMLI*QREINRILHKA
Trigger: GGCCTTATGCAAAATCCTGTTTATCTCACGTTGCCAAATTAGCATTTCCATGAGAAGCATGCAAAAACATCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR CCA 72 bp TTGACAGGAATCAGCTATTTTATGAAGAGAGCCACATaGGATATAGGGCTAGACTTAAGTTTGGAAGTAGAT +
Preference number: 3 (lower is better)
Translates to: LTGISYFMKRAT*DIGLDLSLEVD
Trigger: ATCTACTTCCAAACTTAAGTCTAGCCCTATATCCCATGTGGCTCTCTTCATAAAATAGCTGATTCCTGTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR-3UTR CAA 90 bp TGCCCTTTTAATTTGCCCATTTCTGCAACAGAAATGAGAGAACTTGAAGTTAGCCAGAAACTATCTCACTaGCAGGAAATAGAAAATGAC +
Preference number: 3 (lower is better)
Translates to: CPFNLPISATEMRELEVSQKLSH*QEIEND
Trigger: GTCATTTTCTATTTCCTGCAAGTGAGATAGTTTCTG...GCTAACTTCAAGTTCTCTCATTTCTGTTGCAGAAATGGGCAAATTAAAAGGGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR-3UTR CAA 90 bp ATTGATCTGTCTGTTTATTCTTACATACATGCAAGACTGAGACATATCTCCCTAAGTTCCAGAAAAGCCTaGTGCTTTCTAGAACAGTCT +
Preference number: 3 (lower is better)
Translates to: IDLSVYSYIHARLRHISLSSRKA*CFLEQS
Trigger: AGACTGTTCTAGAAAGCACAAGGCTTTTCTGGAACT...TAGGGAGATATGTCTCAGTCTTGCATGTATGTAAGAATAAACAGACAGATCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR-3UTR CAA 90 bp GCAGCTTCTTTTAAATCCCTTTATTTTGGAAAGGTTGGAGAATTACAGCAGTGTTTGGCTGTCTTTTGCTaGTGCAATGTTTTCTCACAA +
Preference number: 3 (lower is better)
Translates to: AASFKSLYFGKVGELQQCLAVFC*CNVFSQ
Trigger: TTGTGAGAAAACATTGCACAAGCAAAAGACAGCCAA...ACACTGCTGTAATTCTCCAACCTTTCCAAAATAAAGGGATTTAAAAGAAGCTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR TCA 72 bp TGTTCGGAAACAAACACACTCAAGAATTGGTTTTTCTaGACCAATAAAGGCTCTCTGAAGAAATGCTTGGAT +
Preference number: 3 (lower is better)
Translates to: CSETNTLKNWFF*TNKGSLKKCLD
Trigger: ATCCAAGCATTTCTTCAGAGAGCCTTTATTGGTTCAGAAAAACCAATTCTTGAGTGTGTTTGTTTCCGAACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR GCA 72 bp GTCAGTGAAAGTTCTTGGCCCATGATTAAAAGTCTTTaGCAATTAGTACTCAACAACTTCAATTCGGTTTTT +
Preference number: 3 (lower is better)
Translates to: VSESSWPMIKSL*QLVLNNFNSVF
Trigger: AAAAACCGAATTGAAGTTGTTGAGTACTAATTGGCAAAGACTTTTAATCATGGGCCAAGAACTTTCACTGAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CAA 72 bp GCCAAACCGAGGCCAGCGAGAACGGCCACCACCGCATaGCTCTGCAGCCAGAATCGTTCCACCACACCCATG +
Preference number: 4 (lower is better)
Translates to: AKPRPARTATTA*LCSQNRSTTPM
Trigger: CATGGGTGTGGTGGAACGATTCTGGCTGCAGAGCAATGCGGTGGTGGCCGTTCTCGCTGGCCTCGGTTTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
CDS-3UTR TCA 90 bp ATGGAGATGCAGGCACCTCGGTGGGTGGAAACTAGTGACCGTGCGCTGAGAGGAGCTCATGTGCGGCTGTaGTCAGTTCCCCCGAGTCTC +
Preference number: 4 (lower is better)
Translates to: MEMQAPRWVETSDRALRGAHVRL*SVPPSL
Trigger: GAGACTCGGGGGAACTGATCACAGCCGCACATGAGC...TCCTCTCAGCGCACGGTCACTAGTTTCCACCCACCGAGGTGCCTGCATCTCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR TCA 90 bp GGAATCAGGGCCCGCTTTCCAGCAGGGCTGAACAGGGACATGTGTCAAGGCTACAGGATGATGGCATCCTaGGGCATGGAGTCCAGAAGA +
Preference number: 4 (lower is better)
Translates to: GIRARFPAGLNRDMCQGYRMMAS*GMESRR
Trigger: TCTTCTGGACTCCATGCCTCAGGATGCCATCATCCT...GTAGCCTTGACACATGTCCCTGTTCAGCCCTGCTGGAAAGCGGGCCCTGATTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CCA 90 bp GGAATCAGGGCCCGCTTTCCAGCAGGGCTGAACAGGGACATGTGTCAAGGCTACAAACCTCGGCTGCAATaGACCACTGCCATGTTAGGC +
Preference number: 4 (lower is better)
Translates to: GIRARFPAGLNRDMCQGYKPRLQ*TTAMLG
Trigger: GCCTAACATGGCAGTGGTCCATTGCAGCCGAGGTTT...GTAGCCTTGACACATGTCCCTGTTCAGCCCTGCTGGAAAGCGGGCCCTGATTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CCA 90 bp ATGGAGATGCAGGCACCTCGGTGGGTGGAAACTAGTGACCGTGCGCTGAGAGGAGCCACATCTCCTCATTaGCCACCGATTCCCAAGAAG +
Preference number: 4 (lower is better)
Translates to: MEMQAPRWVETSDRALRGATSPH*PPIPKK
Trigger: CTTCTTGGGAATCGGTGGCCAATGAGGAGATGTGGC...TCCTCTCAGCGCACGGTCACTAGTTTCCACCCACCGAGGTGCCTGCATCTCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CAA 72 bp TTCCTCCTCGGGCTAACCTCCAGGCAGAAGTTGGCTTaGTGGGGTTCCTGTAGATCTGCCAACCCATGGCAC +
Preference number: 4 (lower is better)
Translates to: FLLGLTSRQKLA*WGSCRSANPWH
Trigger: GTGCCATGGGTTGGCAGATCTACAGGAACCCCACAAAGCCAACTTCTGCCTGGAGGTTAGCCCGAGGAGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR TCA 90 bp ATGAATTTATTGAACGACGTCCTCACCCCCACTCTCGCCCATGCCCCTTTGTTCGCTCATGTGCGGCTGTaGTCAGTTCCCCCGAGTCTC +
Preference number: 4 (lower is better)
Translates to: MNLLNDVLTPTLAHAPLFAHVRL*SVPPSL
Trigger: GAGACTCGGGGGAACTGATCACAGCCGCACATGAGC...GAACAAAGGGGCATGGGCGAGAGTGGGGGTGAGGACGTCGTTCAATAAATTCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR TCA 90 bp CGGGAGACCTTTGATCAGACCCTTTTGCTAGTACAATGCCACGGAACTGTGACTAGCCACAGAGGAGATTaGCGCGGTAGGCGACGGAGC +
Preference number: 4 (lower is better)
Translates to: RETFDQTLLLVQCHGTVTSHRGD*RGRRRS
Trigger: GCTCCGTCGCCTACCGCGTCAATCTCCTCTGTGGCT...AGTCACAGTTCCGTGGCATTGTACTAGCAAAAGGGTCTGATCAAAGGTCTCCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR TCA 90 bp GGAATCAGGGCCCGCTTTCCAGCAGGGCTGAACAGGGACATGTGTCAAGGCTACAATGGCCGCTATCTTTaGTCTCTCCTTTGCGGCTGT +
Preference number: 4 (lower is better)
Translates to: GIRARFPAGLNRDMCQGYNGRYL*SLLCGC
Trigger: ACAGCCGCAAAGGAGAGATCAAAGATAGCGGCCATT...GTAGCCTTGACACATGTCCCTGTTCAGCCCTGCTGGAAAGCGGGCCCTGATTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR GCA 90 bp CAGTGCTTTGCTAGTGATGATGGCAGCCACAATGCCCTTGTCCTGTGCCCTCTGACCACCGCATTGCTCTaGAGCCAGAATCGTTCCACC +
Preference number: 4 (lower is better)
Translates to: QCFASDDGSHNALVLCPLTTALL*SQNRST
Trigger: GGTGGAACGATTCTGGCTGCAGAGCAATGCGGTGGT...CAGAGGGCACAGGACAAGGGCATTGTGGCTGCCATCATCACTAGCAAAGCACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CAA 72 bp CTTGCTGGCTTTGAGCTGGGTATGAGCCTGCTGACTTaGGGGACATTAAGGCACAGAGGCTTCCTCAGAGCC +
Preference number: 4 (lower is better)
Translates to: LAGFELGMSLLT*GTLRHRGFLRA
Trigger: GGCTCTGAGGAAGCCTCTGTGCCTTAATGTCCCCAAAGTCAGCAGGCTCATACCCAGCTCAAAGCCAGCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR TCA 90 bp GGAATCAGGGCCCGCTTTCCAGCAGGGCTGAACAGGGACATGTGTCAAGGCTACTTCTTGATCCACCAGTaGAACATCTGGTCTCAAGCC +
Preference number: 4 (lower is better)
Translates to: GIRARFPAGLNRDMCQGYFLIHQ*NIWSQA
Trigger: GGCTTGAGACCAGATGTTTCACTGGTGGATCAAGAA...GTAGCCTTGACACATGTCCCTGTTCAGCCCTGCTGGAAAGCGGGCCCTGATTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR GCA 90 bp ACTCATGTGCAAAGCACACTCGGCAGCGGACATGCCTACTACATGCTGATACACCGGCCACCACCGCATTaGTCTGCAGCCAGAATCGTT +
Preference number: 4 (lower is better)
Translates to: THVQSTLGSGHAYYMLIHRPPPH*SAARIV
Trigger: AACGATTCTGGCTGCAGAGCAATGCGGTGGTGGCCG...GTGTATCAGCATGTAGTAGGCATGTCCGCTGCCGAGTGTGCTTTGCACATGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR CCA 90 bp GGTAAGAAGTGGGACGTGCTCAGTGCTTTGCTAGTGATGATGGCAGCCACAATGTCTCAGACACAAGCGTaGCCAAACCGAGGCCAGCGA +
Preference number: 4 (lower is better)
Translates to: GKKWDVLSALLVMMAATMSQTQA*PNRGQR
Trigger: TCGCTGGCCTCGGTTTGGCCACGCTTGTGTCTGAGA...CATTGTGGCTGCCATCATCACTAGCAAAGCACTGAGCACGTCCCACTTCTTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR CCA 90 bp TGCACACCAGCAAGAAAGAGGCTGTGGGCCACTCCAAAGGCTTTAATCTCACCATCTCAGACACAAGCGTaGCCAAACCGAGGCCAGCGA +
Preference number: 4 (lower is better)
Translates to: CTPARKRLWATPKALISPSQTQA*PNRGQR
Trigger: TCGCTGGCCTCGGTTTGGCCACGCTTGTGTCTGAGA...TGGTGAGATTAAAGCCTTTGGAGTGGCCCACAGCCTCTTTCTTGCTGGTGTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR TCA 90 bp AATGGAGTCTTCATTCTTGCTTGCCACATCTCCTCATTGGCCACCGATTCCCAAGCTCATGTGCGGCTGTaGTCAGTTCCCCCGAGTCTC +
Preference number: 4 (lower is better)
Translates to: NGVFILACHISSLATDSQAHVRL*SVPPSL
Trigger: GAGACTCGGGGGAACTGATCACAGCCGCACATGAGC...TTGGGAATCGGTGGCCAATGAGGAGATGTGGCAAGCAAGAATGAAGACTCCATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
CDS-3UTR GCA 90 bp ATGGAGATGCAGGCACCTCGGTGGGTGGAAACTAGTGACCGTGCGCTGAGAGGAAACTGCAGCAGACTCTaGCAGACTGAAGATGAAGAA +
Preference number: 4 (lower is better)
Translates to: MEMQAPRWVETSDRALRGNCSRL*QTEDEE
Trigger: TTCTTCATCTTCAGTCTGGCAGAGTCTGCTGCAGTT...TCCTCTCAGCGCACGGTCACTAGTTTCCACCCACCGAGGTGCCTGCATCTCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CCA 90 bp CTAGAACCTACAGTCAGTTGCTCTGAGGACTACAGATGTTTTTGCATGCTTCTCCCTCGCAGTGTCGTCTaGTCTCCCCAGGTCCAGCGG +
Preference number: 4 (lower is better)
Translates to: LEPTVSCSEDYRCFCMLLPRSVV*SPQVQR
Trigger: CCGCTGGACCTGGGGAGACCAGACGACACTGCGAGG...GAGAAGCATGCAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTAGGTTCTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR CAA 72 bp GTTTTTGCACACCGAGTTGGGGAGATGGTAAAGGGCTaGCCACACAAGCAAGGAGAGCTGACTTGCTCCCTA +
Preference number: 4 (lower is better)
Translates to: VFAHRVGEMVKG*PHKQGELTCSL
Trigger: TAGGGAGCAAGTCAGCTCTCCTTGCTTGTGTGGCAAGCCCTTTACCATCTCCCCAACTCGGTGTGCAAAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CAA 72 bp AATGGAGATGGAGGCTTCTCTCCGTGGCAGGCAATCTaGAAGACAGTCCTGGTAATCCCCATCTCAGGGCTT +
Preference number: 4 (lower is better)
Translates to: NGDGGFSPWQAI*KTVLVIPISGL
Trigger: AAGCCCTGAGATGGGGATTACCAGGACTGTCTTCAAGATTGCCTGCCACGGAGAGAAGCCTCCATCTCCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
CDS-3UTR GCA 90 bp CCAATAAGCATGGAGACATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCCGGTCCCCAGGAAAGTaGACTCCTGGCAAATGCCTC +
Preference number: 4 (lower is better)
Translates to: PISMETCLQCLWRQFLLSRSPGK*TPGKCL
Trigger: GAGGCATTTGCCAGGAGTGCACTTTCCTGGGGACCG...GCTGAGAAGGAACTGTCTCCACAGACATTGGAGACATGTCTCCATGCTTATTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp ATGGAGATGCAGGCACCTCGGTGGGTGGAAACTAGTGACCGTGCGCTGAGAGGATGGAGTCTTCATTCTTaGTTGCCACATCTCCTCATT +
Preference number: 4 (lower is better)
Translates to: MEMQAPRWVETSDRALRGWSLHS*LPHLLI
Trigger: AATGAGGAGATGTGGCAAGCAAGAATGAAGACTCCA...TCCTCTCAGCGCACGGTCACTAGTTTCCACCCACCGAGGTGCCTGCATCTCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CCA 90 bp CAGTGCTTTGCTAGTGATGATGGCAGCCACAATGCCCTTGTCCTGTGCCCTCTGGTCCTTTTTCCAGGTTaGGTCGCCTTCATGAATTCC +
Preference number: 4 (lower is better)
Translates to: QCFASDDGSHNALVLCPLVLFPG*VAFMNS
Trigger: GGAATTCATGAAGGCGACCCAACCTGGAAAAAGGAC...CAGAGGGCACAGGACAAGGGCATTGTGGCTGCCATCATCACTAGCAAAGCACTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR CCA 90 bp GCACACCGAGTTGGGGAGATGGTAAAGGGCTTGCCACACAAGCAAGGAGAGCTGCTTGTGCCAATTCACTaGGTGTTCCTCTTGCAAGTA +
Preference number: 4 (lower is better)
Translates to: AHRVGEMVKGLPHKQGELLVPIH*VFLLQV
Trigger: TACTTGCAAGAGGAACACCCAGTGAATTGGCACAAG...CAGCTCTCCTTGCTTGTGTGGCAAGCCCTTTACCATCTCCCCAACTCGGTGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR TCA 90 bp GGTAAGAAGTGGGACGTGCTCAGTGCTTTGCTAGTGATGATGGCAGCCACAATGGTGAGCCAGAAAGCCTaGAAACGGTGTAGAAGAGGA +
Preference number: 4 (lower is better)
Translates to: GKKWDVLSALLVMMAATMVSQKA*KRCRRG
Trigger: TCCTCTTCTACACCGTTTTCAGGCTTTCTGGCTCAC...CATTGTGGCTGCCATCATCACTAGCAAAGCACTGAGCACGTCCCACTTCTTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR GCA 90 bp CCAATAAGCATGGAGACATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCGACTCCAAGCTCATGTaGGGCTGTGATCAGTTCCCC +
Preference number: 4 (lower is better)
Translates to: PISMETCLQCLWRQFLLSDSKLM*GCDQFP
Trigger: GGGGAACTGATCACAGCCGCACATGAGCTTGGAGTC...GCTGAGAAGGAACTGTCTCCACAGACATTGGAGACATGTCTCCATGCTTATTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR GCA 90 bp TGCACACCAGCAAGAAAGAGGCTGTGGGCCACTCCAAAGGCTTTAATCTCACCAGCTAAAAACCTCGGCTaGAATGGACCACTGCCATGT +
Preference number: 4 (lower is better)
Translates to: CTPARKRLWATPKALISPAKNLG*NGPLPC
Trigger: ACATGGCAGTGGTCCATTGCAGCCGAGGTTTTTAGC...TGGTGAGATTAAAGCCTTTGGAGTGGCCCACAGCCTCTTTCTTGCTGGTGTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CCA 90 bp TGGAGAATTGAGAACACTTCTTTGCTGTGGGAAGACAGCACTGTTTTTGTAAAGCCTCGCAGTGTCGTCTaGTCTCCCCAGGTCCAGCGG +
Preference number: 4 (lower is better)
Translates to: WRIENTSLLWEDSTVFVKPRSVV*SPQVQR
Trigger: CCGCTGGACCTGGGGAGACCAGACGACACTGCGAGG...CTTTACAAAAACAGTGCTGTCTTCCCACAGCAAAGAAGTGTTCTCAATTCTCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CAA 72 bp AGCAGTACTGTAGACACGCTCGATCCCACTTCAGACTaGGCCAGGCTGAACGTTCCATATTCTTCCCTGAAG +
Preference number: 4 (lower is better)
Translates to: SSTVDTLDPTSD*ARLNVPYSSLK
Trigger: CTTCAGGGAAGAATATGGAACGTTCAGCCTGGCCAAGTCTGAAGTGGGATCGAGCGTGTCTACAGTACTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR CAA 72 bp CGGGGTAAGAATACTACAGAAGCAAGCAAGGGTTCTTaGTTGGTGCTCTGTGGAATCAGGGCCCGCTTTCCA +
Preference number: 4 (lower is better)
Translates to: RGKNTTEASKGS*LVLCGIRARFP
Trigger: TGGAAAGCGGGCCCTGATTCCACAGAGCACCAACAAAGAACCCTTGCTTGCTTCTGTAGTATTCTTACCCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR TCA 90 bp ATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTGAGCAGACTTGGCCAGGCTaGACGTTCCATATTCTTCCC +
Preference number: 4 (lower is better)
Translates to: MSVETVPSQLEPTVSCSEQTWPG*TFHILP
Trigger: GGGAAGAATATGGAACGTTCAGCCTGGCCAAGTCTG...CTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR TCA 90 bp ACTCATGTGCAAAGCACACTCGGCAGCGGACATGCCTACTACATGCTGATACACTTCTTGATCCACCAGTaGAACATCTGGTCTCAAGCC +
Preference number: 4 (lower is better)
Translates to: THVQSTLGSGHAYYMLIHFLIHQ*NIWSQA
Trigger: GGCTTGAGACCAGATGTTTCACTGGTGGATCAAGAA...GTGTATCAGCATGTAGTAGGCATGTCCGCTGCCGAGTGTGCTTTGCACATGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR GCA 90 bp GCCAGACTGAAGATGAAGAATGGAGTCTTCATTCTTGCTTGCCACATCTCCTCAGACTCCAAGCTCATGTaGGGCTGTGATCAGTTCCCC +
Preference number: 4 (lower is better)
Translates to: ARLKMKNGVFILACHISSDSKLM*GCDQFP
Trigger: GGGGAACTGATCACAGCCGCACATGAGCTTGGAGTC...TGAGGAGATGTGGCAAGCAAGAATGAAGACTCCATTCTTCATCTTCAGTCTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
CDS-3UTR GCA 90 bp CGGGAGACCTTTGATCAGACCCTTTTGCTAGTACAATGCCACGGAACTGTGACTGCTAAAAACCTCGGCTaGAATGGACCACTGCCATGT +
Preference number: 4 (lower is better)
Translates to: RETFDQTLLLVQCHGTVTAKNLG*NGPLPC
Trigger: ACATGGCAGTGGTCCATTGCAGCCGAGGTTTTTAGC...AGTCACAGTTCCGTGGCATTGTACTAGCAAAAGGGTCTGATCAAAGGTCTCCCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR GCA 90 bp CTAGAACCTACAGTCAGTTGCTCTGAGGACTACAGATGTTTTTGCATGCTTCTCCGGCCACCACCGCATTaGTCTGCAGCCAGAATCGTT +
Preference number: 4 (lower is better)
Translates to: LEPTVSCSEDYRCFCMLLRPPPH*SAARIV
Trigger: AACGATTCTGGCTGCAGAGCAATGCGGTGGTGGCCG...GAGAAGCATGCAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTAGGTTCTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CCA 90 bp ATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTGAGAAACCTCGGCTGCAATaGACCACTGCCATGTTAGGC +
Preference number: 4 (lower is better)
Translates to: MSVETVPSQLEPTVSCSEKPRLQ*TTAMLG
Trigger: GCCTAACATGGCAGTGGTCCATTGCAGCCGAGGTTT...CTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR CCA 90 bp TGCCCTTTTAATTTGCCCATTTCTGCAACAGAAATGAGAGAACTTGAAGTTAGCCCTCGCAGTGTCGTCTaGTCTCCCCAGGTCCAGCGG +
Preference number: 4 (lower is better)
Translates to: CPFNLPISATEMRELEVSPRSVV*SPQVQR
Trigger: CCGCTGGACCTGGGGAGACCAGACGACACTGCGAGG...GCTAACTTCAAGTTCTCTCATTTCTGTTGCAGAAATGGGCAAATTAAAAGGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR CAA 72 bp TTACTGGCAGCTGACAAGGGGCAAATTCAGCTCGAATaGTGCAGTCAAGGCCCTGTCAAGCTTTTAGAGGCA +
Preference number: 4 (lower is better)
Translates to: LLAADKGQIQLE*CSQGPVKLLEA
Trigger: TGCCTCTAAAAGCTTGACAGGGCCTTGACTGCACAATTCGAGCTGAATTTGCCCCTTGTCAGCTGCCAGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CAA 72 bp GGTAAGAATACTACAGAAGCAAGCAAGGGTTCTTTGTaGGTGCTCTGTGGAATCAGGGCCCGCTTTCCAGCA +
Preference number: 4 (lower is better)
Translates to: GKNTTEASKGSL*VLCGIRARFPA
Trigger: TGCTGGAAAGCGGGCCCTGATTCCACAGAGCACCAACAAAGAACCCTTGCTTGCTTCTGTAGTATTCTTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CAA 72 bp GGTGTGCCCAACCAGCAAAGAGCATTGTTCTCTCTTTaGTTCTGCCCAAGGCCTGAAAGCAGTCGACAAAAG +
Preference number: 4 (lower is better)
Translates to: GVPNQQRALFSL*FCPRPESSRQK
Trigger: CTTTTGTCGACTGCTTTCAGGCCTTGGGCAGAACAAAAGAGAGAACAATGCTCTTTGCTGGTTGGGCACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR TCA 90 bp CCAGAAGATTTCGTGCAAACTGATCAATCACGTTATTGGTTCTTTGGTCACAAAAGCCACAGAGGAGATTaGCGCGGTAGGCGACGGAGC +
Preference number: 4 (lower is better)
Translates to: PEDFVQTDQSRYWFFGHKSHRGD*RGRRRS
Trigger: GCTCCGTCGCCTACCGCGTCAATCTCCTCTGTGGCT...TTTGTGACCAAAGAACCAATAACGTGATTGATCAGTTTGCACGAAATCTTCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
CDS-3UTR GCA 90 bp CTAGAACCTACAGTCAGTTGCTCTGAGGACTACAGATGTTTTTGCATGCTTCTCACCACCGCATTGCTCTaGAGCCAGAATCGTTCCACC +
Preference number: 4 (lower is better)
Translates to: LEPTVSCSEDYRCFCMLLTTALL*SQNRST
Trigger: GGTGGAACGATTCTGGCTGCAGAGCAATGCGGTGGT...GAGAAGCATGCAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTAGGTTCTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp CAACTCCACTCTCTTTTCTCCCTGAAGAAGAATCTAGAACCCACTAATCTGAGACGGCCACCACCGCATTaGTCTGCAGCCAGAATCGTT +
Preference number: 4 (lower is better)
Translates to: QLHSLFSLKKNLEPTNLRRPPPH*SAARIV
Trigger: AACGATTCTGGCTGCAGAGCAATGCGGTGGTGGCCG...TCTCAGATTAGTGGGTTCTAGATTCTTCTTCAGGGAGAAAAGAGAGTGGAGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CCA 90 bp GGTAAGAAGTGGGACGTGCTCAGTGCTTTGCTAGTGATGATGGCAGCCACAATGCAGTCCAGTTATAGATaGCTCTTGTGCGTTCAATCC +
Preference number: 4 (lower is better)
Translates to: GKKWDVLSALLVMMAATMQSSYR*LLCVQS
Trigger: GGATTGAACGCACAAGAGCCATCTATAACTGGACTG...CATTGTGGCTGCCATCATCACTAGCAAAGCACTGAGCACGTCCCACTTCTTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR CCA 90 bp ATTTCACTCAAAAGCCCTCGGCACTGGTCCTTAACCGCTTATGACATCACAAAGGCCACATCTCCTCATTaGCCACCGATTCCCAAGAAG +
Preference number: 4 (lower is better)
Translates to: ISLKSPRHWSLTAYDITKATSPH*PPIPKK
Trigger: CTTCTTGGGAATCGGTGGCCAATGAGGAGATGTGGC...CTTTGTGATGTCATAAGCGGTTAAGGACCAGTGCCGAGGGCTTTTGAGTGAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR CCA 90 bp GGTAAGAAGTGGGACGTGCTCAGTGCTTTGCTAGTGATGATGGCAGCCACAATGCTTGTGCCAATTCACTaGGTGTTCCTCTTGCAAGTA +
Preference number: 4 (lower is better)
Translates to: GKKWDVLSALLVMMAATMLVPIH*VFLLQV
Trigger: TACTTGCAAGAGGAACACCCAGTGAATTGGCACAAG...CATTGTGGCTGCCATCATCACTAGCAAAGCACTGAGCACGTCCCACTTCTTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR CCA 90 bp TGGAGATGGAGGCTTCTCTCCGTGGCAGGCAATCTTGAAGACAGTCCTGGTAATAACCGGAAAGAGAACTaGTTCTGGAATTCAGAACCG +
Preference number: 4 (lower is better)
Translates to: WRWRLLSVAGNLEDSPGNNRKEN*FWNSEP
Trigger: CGGTTCTGAATTCCAGAACCAGTTCTCTTTCCGGTT...ATTACCAGGACTGTCTTCAAGATTGCCTGCCACGGAGAGAAGCCTCCATCTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR CAA 72 bp ATGCAAGCTCCACGGGAGACCTTTGATCAGACCCTTTaGCTAGTACAATGCCACGGAACTGTGACTATTCCT +
Preference number: 4 (lower is better)
Translates to: MQAPRETFDQTL*LVQCHGTVTIP
Trigger: AGGAATAGTCACAGTTCCGTGGCATTGTACTAGCAAAAGGGTCTGATCAAAGGTCTCCCGTGGAGCTTGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR TCA 90 bp ATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTAATGGCCGCTATCTTTaGTCTCTCCTTTGCGGCTGT +
Preference number: 4 (lower is better)
Translates to: MSPMSVETVPSQLEPTVSNGRYL*SLLCGC
Trigger: ACAGCCGCAAAGGAGAGATCAAAGATAGCGGCCATT...ACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACATTGGAGACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR TCA 90 bp CTAGAACCTACAGTCAGTTGCTCTGAGGACTACAGATGTTTTTGCATGCTTCTCCAGACTTGGCCAGGCTaGACGTTCCATATTCTTCCC +
Preference number: 4 (lower is better)
Translates to: LEPTVSCSEDYRCFCMLLQTWPG*TFHILP
Trigger: GGGAAGAATATGGAACGTTCAGCCTGGCCAAGTCTG...GAGAAGCATGCAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTAGGTTCTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR TCA 90 bp ATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTGAGTTCTTGATCCACCAGTaGAACATCTGGTCTCAAGCC +
Preference number: 4 (lower is better)
Translates to: MSVETVPSQLEPTVSCSEFLIHQ*NIWSQA
Trigger: GGCTTGAGACCAGATGTTTCACTGGTGGATCAAGAA...CTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACAT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR TCA 90 bp CCAGGCACTGCAGGCTCCAATGGACATCTTCAAATCCAGAGAATGGAGGAGCAAGTTGGGTCGCCTTCATaGATTCCTATGCAAACAAAT +
Preference number: 4 (lower is better)
Translates to: PGTAGSNGHLQIQRMEEQVGSPS*IPMQTN
Trigger: ATTTGTTTGCATAGGAATTCATGAAGGCGACCCAAC...TTGCTCCTCCATTCTCTGGATTTGAAGATGTCCATTGGAGCCTGCAGTGCCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR TCA 90 bp TGCACACCAGCAAGAAAGAGGCTGTGGGCCACTCCAAAGGCTTTAATCTCACCAGTTGGGTCGCCTTCATaGATTCCTATGCAAACAAAT +
Preference number: 4 (lower is better)
Translates to: CTPARKRLWATPKALISPVGSPS*IPMQTN
Trigger: ATTTGTTTGCATAGGAATTCATGAAGGCGACCCAAC...TGGTGAGATTAAAGCCTTTGGAGTGGCCCACAGCCTCTTTCTTGCTGGTGTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR TCA 90 bp ATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTGAGTCCCCATGGCCAAAGTaGATAGTCCTTTTTCCAGGT +
Preference number: 4 (lower is better)
Translates to: MSVETVPSQLEPTVSCSESPWPK*IVLFPG
Trigger: ACCTGGAAAAAGGACTATTCACTTTGGCCATGGGGA...CTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR TCA 90 bp CCAATAAGCATGGAGACATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCTCCCCATGGCCAAAGTaGATAGTCCTTTTTCCAGGT +
Preference number: 4 (lower is better)
Translates to: PISMETCLQCLWRQFLLSSPWPK*IVLFPG
Trigger: ACCTGGAAAAAGGACTATTCACTTTGGCCATGGGGA...GCTGAGAAGGAACTGTCTCCACAGACATTGGAGACATGTCTCCATGCTTATTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp CTGTCCAGGCACTGCAGGCTCCAATGGACATCTTCAAATCCAGAGAATGGAGGATGGAGTCTTCATTCTTaGTTGCCACATCTCCTCATT +
Preference number: 4 (lower is better)
Translates to: LSRHCRLQWTSSNPENGGWSLHS*LPHLLI
Trigger: AATGAGGAGATGTGGCAAGCAAGAATGAAGACTCCA...TCCTCCATTCTCTGGATTTGAAGATGTCCATTGGAGCCTGCAGTGCCTGGACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR GCA 90 bp CCAATAAGCATGGAGACATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCTTGTGCTTTCACATCTaGAGGAACTGCAGCAGACTC +
Preference number: 4 (lower is better)
Translates to: PISMETCLQCLWRQFLLSLCFHI*RNCSRL
Trigger: GAGTCTGCTGCAGTTCCTGCAGATGTGAAAGCACAA...GCTGAGAAGGAACTGTCTCCACAGACATTGGAGACATGTCTCCATGCTTATTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp CACCTTTCTCTATCTTTCATGATGTTGGGACATCTGGACGGTGCTCACCGAGTGATGCGTGTAGAGTTGTaGTTTCACATCTGCAGGAAC +
Preference number: 4 (lower is better)
Translates to: HLSLSFMMLGHLDGAHRVMRVEL*FHICRN
Trigger: GTTCCTGCAGATGTGAAAGCACAACTCTACACGCAT...CACTCGGTGAGCACCGTCCAGATGTCCCAACATCATGAAAGATAGAGAAAGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CCA 90 bp ATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGGCATCCTGAGGCATaGAGTCCAGAAGATTTCGTG +
Preference number: 4 (lower is better)
Translates to: MSPMSVETVPSQLEPTVSWHPEA*SPEDFV
Trigger: CACGAAATCTTCTGGACTCCATGCCTCAGGATGCCA...ACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACATTGGAGACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CCA 90 bp ATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTGAGGTCCTTTTTCCAGGTTaGGTCGCCTTCATGAATTCC +
Preference number: 4 (lower is better)
Translates to: MSVETVPSQLEPTVSCSEVLFPG*VAFMNS
Trigger: GGAATTCATGAAGGCGACCCAACCTGGAAAAAGGAC...CTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CCA 90 bp ATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTGAGTGCGCTCACAGGCAATaGCATAGTTCTTGTGCCAAT +
Preference number: 4 (lower is better)
Translates to: MSVETVPSQLEPTVSCSECAHRQ*HSSCAN
Trigger: ATTGGCACAAGAACTATGCCATTGCCTGTGAGCGCA...CTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACAT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CCA 90 bp CCAATAAGCATGGAGACATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCTGCGCTCACAGGCAATaGCATAGTTCTTGTGCCAAT +
Preference number: 4 (lower is better)
Translates to: PISMETCLQCLWRQFLLSCAHRQ*HSSCAN
Trigger: ATTGGCACAAGAACTATGCCATTGCCTGTGAGCGCA...GCTGAGAAGGAACTGTCTCCACAGACATTGGAGACATGTCTCCATGCTTATTGG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp TTTTGTAAAGCTCCAATGCCATTAAGATCAGCAGAAGGTCAAGAAGCAGCCAAAGACTCCAAGCTCATGTaGGGCTGTGATCAGTTCCCC +
Preference number: 4 (lower is better)
Translates to: FCKAPMPLRSAEGQEAAKDSKLM*GCDQFP
Trigger: GGGGAACTGATCACAGCCGCACATGAGCTTGGAGTC...TTTGGCTGCTTCTTGACCTTCTGCTGATCTTAATGGCATTGGAGCTTTACAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR GCA 90 bp ATTTCACTCAAAAGCCCTCGGCACTGGTCCTTAACCGCTTATGACATCACAAAGGCTGCAATGGACCACTaGCATGTTAGGCGAGAAAAT +
Preference number: 4 (lower is better)
Translates to: ISLKSPRHWSLTAYDITKAAMDH*HVRREN
Trigger: ATTTTCTCGCCTAACATGGCAGTGGTCCATTGCAGC...CTTTGTGATGTCATAAGCGGTTAAGGACCAGTGCCGAGGGCTTTTGAGTGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR GCA 90 bp TTTTGTAAAGCTCCAATGCCATTAAGATCAGCAGAAGGTCAAGAAGCAGCCAAAACCACCGCATTGCTCTaGAGCCAGAATCGTTCCACC +
Preference number: 4 (lower is better)
Translates to: FCKAPMPLRSAEGQEAAKTTALL*SQNRST
Trigger: GGTGGAACGATTCTGGCTGCAGAGCAATGCGGTGGT...TTTGGCTGCTTCTTGACCTTCTGCTGATCTTAATGGCATTGGAGCTTTACAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR GCA 90 bp CCAATAAGCATGGAGACATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCAACTGCAGCAGACTCTaGCAGACTGAAGATGAAGAA +
Preference number: 4 (lower is better)
Translates to: PISMETCLQCLWRQFLLSNCSRL*QTEDEE
Trigger: TTCTTCATCTTCAGTCTGGCAGAGTCTGCTGCAGTT...GCTGAGAAGGAACTGTCTCCACAGACATTGGAGACATGTCTCCATGCTTATTGG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp ATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTTGTGCTTTCACATCTaGAGGAACTGCAGCAGACTC +
Preference number: 4 (lower is better)
Translates to: MSPMSVETVPSQLEPTVSLCFHI*RNCSRL
Trigger: GAGTCTGCTGCAGTTCCTGCAGATGTGAAAGCACAA...ACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACATTGGAGACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp CTGTCCAGGCACTGCAGGCTCCAATGGACATCTTCAAATCCAGAGAATGGAGGACTGTGGATCATTTTGTaGTTTCTGAGTGTAGAGATG +
Preference number: 4 (lower is better)
Translates to: LSRHCRLQWTSSNPENGGLWIIL*FLSVEM
Trigger: CATCTCTACACTCAGAAAGCACAAAATGATCCACAG...TCCTCCATTCTCTGGATTTGAAGATGTCCATTGGAGCCTGCAGTGCCTGGACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR CCA 90 bp ATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTGAGACGAGAAAGCACCAATaGCCGCTATCTTTGATCTCT +
Preference number: 4 (lower is better)
Translates to: MSVETVPSQLEPTVSCSETRKHQ*PLSLIS
Trigger: AGAGATCAAAGATAGCGGCCATTGGTGCTTTCTCGT...CTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CCA 90 bp TGCCCTTTTAATTTGCCCATTTCTGCAACAGAAATGAGAGAACTTGAAGTTAGCTCTCAGACACAAGCGTaGCCAAACCGAGGCCAGCGA +
Preference number: 4 (lower is better)
Translates to: CPFNLPISATEMRELEVSSQTQA*PNRGQR
Trigger: TCGCTGGCCTCGGTTTGGCCACGCTTGTGTCTGAGA...GCTAACTTCAAGTTCTCTCATTTCTGTTGCAGAAATGGGCAAATTAAAAGGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CCA 90 bp CCAATAAGCATGGAGACATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCCAGTCCAGTTATAGATaGCTCTTGTGCGTTCAATCC +
Preference number: 4 (lower is better)
Translates to: PISMETCLQCLWRQFLLSQSSYR*LLCVQS
Trigger: GGATTGAACGCACAAGAGCCATCTATAACTGGACTG...GCTGAGAAGGAACTGTCTCCACAGACATTGGAGACATGTCTCCATGCTTATTGG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR CAA 72 bp TCAAGGCCCTGTCAAGCTTTTAGAGGCACCCTTGACTaGAAGCACCATCATGACTGGCATTTCACTCAAAAG +
Preference number: 4 (lower is better)
Translates to: SRPCQAFRGTLD*KHHHDWHFTQK
Trigger: CTTTTGAGTGAAATGCCAGTCATGATGGTGCTTCAAGTCAAGGGTGCCTCTAAAAGCTTGACAGGGCCTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
3UTR CAA 72 bp GATGTTGGGACATCTGGACGGTGCTCACCGAGTGTTTaGTTGGCTGTCTTTTGCTTGTGCAATGTTTTCTCA +
Preference number: 4 (lower is better)
Translates to: DVGTSGRCSPSV*LAVFCLCNVFS
Trigger: TGAGAAAACATTGCACAAGCAAAAGACAGCCAACAAAACACTCGGTGAGCACCGTCCAGATGTCCCAACATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR TCA 90 bp GTGATCATGGTAGATGGAGAATTGAGAACACTTCTTTGCTGTGGGAAGACAGCATCCCCATGGCCAAAGTaGATAGTCCTTTTTCCAGGT +
Preference number: 4 (lower is better)
Translates to: VIMVDGELRTLLCCGKTASPWPK*IVLFPG
Trigger: ACCTGGAAAAAGGACTATTCACTTTGGCCATGGGGA...TGCTGTCTTCCCACAGCAAAGAAGTGTTCTCAATTCTCCATCTACCATGATCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR TCA 90 bp ATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTAGAGATGAAAATGTCTaGTGGCTTCAGACAGCAGGA +
Preference number: 4 (lower is better)
Translates to: MSPMSVETVPSQLEPTVSRDENV*WLQTAG
Trigger: TCCTGCTGTCTGAAGCCATCAGACATTTTCATCTCT...ACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACATTGGAGACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp GTGATCATGGTAGATGGAGAATTGAGAACACTTCTTTGCTGTGGGAAGACAGCAGCTGCAATGGACCACTaGCATGTTAGGCGAGAAAAT +
Preference number: 4 (lower is better)
Translates to: VIMVDGELRTLLCCGKTAAAMDH*HVRREN
Trigger: ATTTTCTCGCCTAACATGGCAGTGGTCCATTGCAGC...TGCTGTCTTCCCACAGCAAAGAAGTGTTCTCAATTCTCCATCTACCATGATCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR GCA 90 bp ACCTTTGATCAGACCCTTTTGCTAGTACAATGCCACGGAACTGTGACTATTCCTGTCTTCATTCTTGCTTaGCACATCTCCTCATTGGCC +
Preference number: 4 (lower is better)
Translates to: TFDQTLLLVQCHGTVTIPVFILA*HISSLA
Trigger: GGCCAATGAGGAGATGTGGCAAGCAAGAATGAAGAC...AGGAATAGTCACAGTTCCGTGGCATTGTACTAGCAAAAGGGTCTGATCAAAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR GCA 90 bp ATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTGAGACTGGGTGTTCCTCTTaGAAGTACACAATCTCCTTA +
Preference number: 4 (lower is better)
Translates to: MSVETVPSQLEPTVSCSETGCSS*KYTISL
Trigger: TAAGGAGATTGTGTACTTGCAAGAGGAACACCCAGT...CTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp CCAATAAGCATGGAGACATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCACTGGGTGTTCCTCTTaGAAGTACACAATCTCCTTA +
Preference number: 4 (lower is better)
Translates to: PISMETCLQCLWRQFLLSTGCSS*KYTISL
Trigger: TAAGGAGATTGTGTACTTGCAAGAGGAACACCCAGT...GCTGAGAAGGAACTGTCTCCACAGACATTGGAGACATGTCTCCATGCTTATTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp TGCACACCAGCAAGAAAGAGGCTGTGGGCCACTCCAAAGGCTTTAATCTCACCAAGTTCTCTTCTTAGATaGTTGAGAGCAGCTATAATG +
Preference number: 4 (lower is better)
Translates to: CTPARKRLWATPKALISPSSLLR*LRAAIM
Trigger: CATTATAGCTGCTCTCAAGCATCTAAGAAGAGAACT...TGGTGAGATTAAAGCCTTTGGAGTGGCCCACAGCCTCTTTCTTGCTGGTGTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CCA 90 bp ATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTACGAGAAAGCACCAATaGCCGCTATCTTTGATCTCT +
Preference number: 4 (lower is better)
Translates to: MSPMSVETVPSQLEPTVSTRKHQ*PLSLIS
Trigger: AGAGATCAAAGATAGCGGCCATTGGTGCTTTCTCGT...ACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACATTGGAGACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CCA 90 bp CAACTTCACCTTGTGAATGTCTCACACGACTTCACAGAAATGCACACCAGCAAGCAGTCCAGTTATAGATaGCTCTTGTGCGTTCAATCC +
Preference number: 4 (lower is better)
Translates to: QLHLVNVSHDFTEMHTSKQSSYR*LLCVQS
Trigger: GGATTGAACGCACAAGAGCCATCTATAACTGGACTG...CTTGCTGGTGTGCATTTCTGTGAAGTCGTGTGAGACATTCACAAGGTGAAGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CCA 90 bp ATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTCTTGTGCCAATTCACTaGGTGTTCCTCTTGCAAGTA +
Preference number: 4 (lower is better)
Translates to: MSPMSVETVPSQLEPTVSLVPIH*VFLLQV
Trigger: TACTTGCAAGAGGAACACCCAGTGAATTGGCACAAG...ACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACATTGGAGACAT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR CAA 72 bp AATGGAGTCTTCATTCTTGCTTGCCACATCTCCTCATaGGCCACCGATTCCCAAGAAGATGGACCAAATCTT +
Preference number: 4 (lower is better)
Translates to: NGVFILACHISS*ATDSQEDGPNL
Trigger: AAGATTTGGTCCATCTTCTTGGGAATCGGTGGCCAATGAGGAGATGTGGCAAGCAAGAATGAAGACTCCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR CAA 72 bp TCTGCTTTCTCTGCTGTGATCATGGTAGATGGAGAATaGAGAACACTTCTTTGCTGTGGGAAGACAGCACTG +
Preference number: 4 (lower is better)
Translates to: SAFSAVIMVDGE*RTLLCCGKTAL
Trigger: CAGTGCTGTCTTCCCACAGCAAAGAAGTGTTCTCAATTCTCCATCTACCATGATCACAGCAGAGAAAGCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CAA 72 bp CAGGCTGTGGCCCTTGTCATTAAGAATCTTATCTCTTaGATCATTGGTGTGCCCAACCAGCAAAGAGCATTG +
Preference number: 4 (lower is better)
Translates to: QAVALVIKNLIS*IIGVPNQQRAL
Trigger: CAATGCTCTTTGCTGGTTGGGCACACCAATGATCAAAGAGATAAGATTCTTAATGACAAGGGCCACAGCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR TCA 90 bp TGCCCTTTTAATTTGCCCATTTCTGCAACAGAAATGAGAGAACTTGAAGTTAGCAGGATGATGGCATCCTaGGGCATGGAGTCCAGAAGA +
Preference number: 4 (lower is better)
Translates to: CPFNLPISATEMRELEVSRMMAS*GMESRR
Trigger: TCTTCTGGACTCCATGCCTCAGGATGCCATCATCCT...GCTAACTTCAAGTTCTCTCATTTCTGTTGCAGAAATGGGCAAATTAAAAGGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR TCA 90 bp ATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTGTTGGGTCGCCTTCATaGATTCCTATGCAAACAAAT +
Preference number: 4 (lower is better)
Translates to: MSPMSVETVPSQLEPTVSVGSPS*IPMQTN
Trigger: ATTTGTTTGCATAGGAATTCATGAAGGCGACCCAAC...ACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACATTGGAGACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR TCA 90 bp CTAGAACCTACAGTCAGTTGCTCTGAGGACTACAGATGTTTTTGCATGCTTCTCAGAGATGAAAATGTCTaGTGGCTTCAGACAGCAGGA +
Preference number: 4 (lower is better)
Translates to: LEPTVSCSEDYRCFCMLLRDENV*WLQTAG
Trigger: TCCTGCTGTCTGAAGCCATCAGACATTTTCATCTCT...GAGAAGCATGCAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTAGGTTCTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp ATTGATCTGTCTGTTTATTCTTACATACATGCAAGACTGAGACATATCTCCCTACGGTCCCCAGGAAAGTaGACTCCTGGCAAATGCCTC +
Preference number: 4 (lower is better)
Translates to: IDLSVYSYIHARLRHISLRSPGK*TPGKCL
Trigger: GAGGCATTTGCCAGGAGTGCACTTTCCTGGGGACCG...TAGGGAGATATGTCTCAGTCTTGCATGTATGTAAGAATAAACAGACAGATCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR GCA 90 bp ATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGGAGTCTTCATTCTTaGTTGCCACATCTCCTCATT +
Preference number: 4 (lower is better)
Translates to: MSPMSVETVPSQLEPTVSWSLHS*LPHLLI
Trigger: AATGAGGAGATGTGGCAAGCAAGAATGAAGACTCCA...ACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACATTGGAGACAT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp CTAGAACCTACAGTCAGTTGCTCTGAGGACTACAGATGTTTTTGCATGCTTCTCATGCGTGTAGAGTTGTaGTTTCACATCTGCAGGAAC +
Preference number: 4 (lower is better)
Translates to: LEPTVSCSEDYRCFCMLLMRVEL*FHICRN
Trigger: GTTCCTGCAGATGTGAAAGCACAACTCTACACGCAT...GAGAAGCATGCAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTAGGTTCTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp GGCCACTCCAAAGGCTTTAATCTCACCAGTGTGCATTTTGCTGCCATGTCTATAACTGGGTGTTCCTCTTaGAAGTACACAATCTCCTTA +
Preference number: 4 (lower is better)
Translates to: GHSKGFNLTSVHFAAMSITGCSS*KYTISL
Trigger: TAAGGAGATTGTGTACTTGCAAGAGGAACACCCAGT...TATAGACATGGCAGCAAAATGCACACTGGTGAGATTAAAGCCTTTGGAGTGGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CCA 90 bp CGGGAGACCTTTGATCAGACCCTTTTGCTAGTACAATGCCACGGAACTGTGACTCAAACTGCAAGAGCTTaGATATTGAATGAAAGTTCG +
Preference number: 4 (lower is better)
Translates to: RETFDQTLLLVQCHGTVTQTARA*ILNESS
Trigger: CGAACTTTCATTCAATATCCAAGCTCTTGCAGTTTG...AGTCACAGTTCCGTGGCATTGTACTAGCAAAAGGGTCTGATCAAAGGTCTCCCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR CCA 90 bp CAACTCCACTCTCTTTTCTCCCTGAAGAAGAATCTAGAACCCACTAATCTGAGAGTCCTTTTTCCAGGTTaGGTCGCCTTCATGAATTCC +
Preference number: 4 (lower is better)
Translates to: QLHSLFSLKKNLEPTNLRVLFPG*VAFMNS
Trigger: GGAATTCATGAAGGCGACCCAACCTGGAAAAAGGAC...TCTCAGATTAGTGGGTTCTAGATTCTTCTTCAGGGAGAAAAGAGAGTGGAGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CCA 90 bp TGCCCTTTTAATTTGCCCATTTCTGCAACAGAAATGAGAGAACTTGAAGTTAGCGCCACATCTCCTCATTaGCCACCGATTCCCAAGAAG +
Preference number: 4 (lower is better)
Translates to: CPFNLPISATEMRELEVSATSPH*PPIPKK
Trigger: CTTCTTGGGAATCGGTGGCCAATGAGGAGATGTGGC...GCTAACTTCAAGTTCTCTCATTTCTGTTGCAGAAATGGGCAAATTAAAAGGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR CAA 72 bp ATCCCCATGGCCAAAGTGAATAGTCCTTTTTCCAGGTaGGGTCGCCTTCATGAATTCCTATGCAAACAAATG +
Preference number: 4 (lower is better)
Translates to: IPMAKVNSPFSR*GRLHEFLCKQM
Trigger: CATTTGTTTGCATAGGAATTCATGAAGGCGACCCAACCTGGAAAAAGGACTATTCACTTTGGCCATGGGGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR CAA 72 bp TGGACGGTGCTCACCGAGTGTTTTGTTGGCTGTCTTTaGCTTGTGCAATGTTTTCTCACAATTAATGAGTGG +
Preference number: 4 (lower is better)
Translates to: WTVLTECFVGCL*LVQCFLTINEW
Trigger: CCACTCATTAATTGTGAGAAAACATTGCACAAGCAAAAGACAGCCAACAAAACACTCGGTGAGCACCGTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR TCA 90 bp AAAGAGGCCTCGGCTGCTCCTTGTGAGCCTAGACAGACACTGTTCCTTTTAAATCATATTTATTACCTGTaGAAGCAGTACTGTAGACAC +
Preference number: 4 (lower is better)
Translates to: KEASAAPCEPRQTLFLLNHIYYL*KQYCRH
Trigger: GTGTCTACAGTACTGCTTTCACAGGTAATAAATATG...ATTTAAAAGGAACAGTGTCTGTCTAGGCTCACAAGGAGCAGCCGAGGCCTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR TCA 90 bp ATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTGAGCATATTTATTACCTGTaGAAGCAGTACTGTAGACAC +
Preference number: 4 (lower is better)
Translates to: MSVETVPSQLEPTVSCSEHIYYL*KQYCRH
Trigger: GTGTCTACAGTACTGCTTTCACAGGTAATAAATATG...CTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp TTTTGTAAAGCTCCAATGCCATTAAGATCAGCAGAAGGTCAAGAAGCAGCCAAATTGTGCTTTCACATCTaGAGGAACTGCAGCAGACTC +
Preference number: 4 (lower is better)
Translates to: FCKAPMPLRSAEGQEAAKLCFHI*RNCSRL
Trigger: GAGTCTGCTGCAGTTCCTGCAGATGTGAAAGCACAA...TTTGGCTGCTTCTTGACCTTCTGCTGATCTTAATGGCATTGGAGCTTTACAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CCA 90 bp TGCCCTTTTAATTTGCCCATTTCTGCAACAGAAATGAGAGAACTTGAAGTTAGCTGGCATCCTGAGGCATaGAGTCCAGAAGATTTCGTG +
Preference number: 4 (lower is better)
Translates to: CPFNLPISATEMRELEVSWHPEA*SPEDFV
Trigger: CACGAAATCTTCTGGACTCCATGCCTCAGGATGCCA...GCTAACTTCAAGTTCTCTCATTTCTGTTGCAGAAATGGGCAAATTAAAAGGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR TCA 90 bp GCAGCTTCTTTTAAATCCCTTTATTTTGGAAAGGTTGGAGAATTACAGCAGTGTGTGAGCCAGAAAGCCTaGAAACGGTGTAGAAGAGGA +
Preference number: 4 (lower is better)
Translates to: AASFKSLYFGKVGELQQCVSQKA*KRCRRG
Trigger: TCCTCTTCTACACCGTTTTCAGGCTTTCTGGCTCAC...ACACTGCTGTAATTCTCCAACCTTTCCAAAATAAAGGGATTTAAAAGAAGCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR TCA 90 bp ATTGATCTGTCTGTTTATTCTTACATACATGCAAGACTGAGACATATCTCCCTACAGACTTGGCCAGGCTaGACGTTCCATATTCTTCCC +
Preference number: 4 (lower is better)
Translates to: IDLSVYSYIHARLRHISLQTWPG*TFHILP
Trigger: GGGAAGAATATGGAACGTTCAGCCTGGCCAAGTCTG...TAGGGAGATATGTCTCAGTCTTGCATGTATGTAAGAATAAACAGACAGATCAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR TCA 90 bp CAACTTCACCTTGTGAATGTCTCACACGACTTCACAGAAATGCACACCAGCAAGCATATTTATTACCTGTaGAAGCAGTACTGTAGACAC +
Preference number: 4 (lower is better)
Translates to: QLHLVNVSHDFTEMHTSKHIYYL*KQYCRH
Trigger: GTGTCTACAGTACTGCTTTCACAGGTAATAAATATG...CTTGCTGGTGTGCATTTCTGTGAAGTCGTGTGAGACATTCACAAGGTGAAGTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR TCA 90 bp ATAATCACACATACAGGATGTTCGGAAACAAACACACTCAAGAATTGGTTTTTCAGGATGATGGCATCCTaGGGCATGGAGTCCAGAAGA +
Preference number: 4 (lower is better)
Translates to: IITHTGCSETNTLKNWFFRMMAS*GMESRR
Trigger: TCTTCTGGACTCCATGCCTCAGGATGCCATCATCCT...GAAAAACCAATTCTTGAGTGTGTTTGTTTCCGAACATCCTGTATGTGTGATTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR GCA 90 bp ATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTGAGTATATTTGCCCAAACTaGAAGAGCTTGGATATTGAA +
Preference number: 4 (lower is better)
Translates to: MSVETVPSQLEPTVSCSEYICPN*KSLDIE
Trigger: TTCAATATCCAAGCTCTTGCAGTTTGGGCAAATATA...CTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp TGCCCTTTTAATTTGCCCATTTCTGCAACAGAAATGAGAGAACTTGAAGTTAGCGTCTTCATTCTTGCTTaGCACATCTCCTCATTGGCC +
Preference number: 4 (lower is better)
Translates to: CPFNLPISATEMRELEVSVFILA*HISSLA
Trigger: GGCCAATGAGGAGATGTGGCAAGCAAGAATGAAGAC...GCTAACTTCAAGTTCTCTCATTTCTGTTGCAGAAATGGGCAAATTAAAAGGGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp TCTATACATATACCTAAAGGTGTACTTGCATATATAAGAGCATGCATCCCTCCCGTCTTCATTCTTGCTTaGCACATCTCCTCATTGGCC +
Preference number: 4 (lower is better)
Translates to: SIHIPKGVLAYIRACIPPVFILA*HISSLA
Trigger: GGCCAATGAGGAGATGTGGCAAGCAAGAATGAAGAC...GGGAGGGATGCATGCTCTTATATATGCAAGTACACCTTTAGGTATATGTATAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR GCA 90 bp GCTGTTATGCTCCAGCCAAGGAAAAGCAATAGCAAGTTAGGAAAAGCAACTTTTATGCGTGTAGAGTTGTaGTTTCACATCTGCAGGAAC +
Preference number: 4 (lower is better)
Translates to: AVMLQPRKSNSKLGKATFMRVEL*FHICRN
Trigger: GTTCCTGCAGATGTGAAAGCACAACTCTACACGCAT...AAAAGTTGCTTTTCCTAACTTGCTATTGCTTTTCCTTGGCTGGAGCATAACAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR GCA 90 bp ATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTGAGCTTATAAAGTTTATATaGATGCGTGTAGAGTTGTGC +
Preference number: 4 (lower is better)
Translates to: MSVETVPSQLEPTVSCSELIKFI*MRVELC
Trigger: GCACAACTCTACACGCATGCATATAAACTTTATAAG...CTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp CTAGAACCTACAGTCAGTTGCTCTGAGGACTACAGATGTTTTTGCATGCTTCTCCTGTGGATCATTTTGTaGTTTCTGAGTGTAGAGATG +
Preference number: 4 (lower is better)
Translates to: LEPTVSCSEDYRCFCMLLLWIIL*FLSVEM
Trigger: CATCTCTACACTCAGAAAGCACAAAATGATCCACAG...GAGAAGCATGCAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTAGGTTCTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CCA 90 bp TCTATACATATACCTAAAGGTGTACTTGCATATATAAGAGCATGCATCCCTCCCTGCGCTCACAGGCAATaGCATAGTTCTTGTGCCAAT +
Preference number: 4 (lower is better)
Translates to: SIHIPKGVLAYIRACIPPCAHRQ*HSSCAN
Trigger: ATTGGCACAAGAACTATGCCATTGCCTGTGAGCGCA...GGGAGGGATGCATGCTCTTATATATGCAAGTACACCTTTAGGTATATGTATAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR TCA 90 bp ATAATCACACATACAGGATGTTCGGAAACAAACACACTCAAGAATTGGTTTTTCAATGGCCGCTATCTTTaGTCTCTCCTTTGCGGCTGT +
Preference number: 4 (lower is better)
Translates to: IITHTGCSETNTLKNWFFNGRYL*SLLCGC
Trigger: ACAGCCGCAAAGGAGAGATCAAAGATAGCGGCCATT...GAAAAACCAATTCTTGAGTGTGTTTGTTTCCGAACATCCTGTATGTGTGATTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR TCA 90 bp TCTATACATATACCTAAAGGTGTACTTGCATATATAAGAGCATGCATCCCTCCCAGAGATGAAAATGTCTaGTGGCTTCAGACAGCAGGA +
Preference number: 4 (lower is better)
Translates to: SIHIPKGVLAYIRACIPPRDENV*WLQTAG
Trigger: TCCTGCTGTCTGAAGCCATCAGACATTTTCATCTCT...GGGAGGGATGCATGCTCTTATATATGCAAGTACACCTTTAGGTATATGTATAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR GCA 90 bp TGCCCTTTTAATTTGCCCATTTCTGCAACAGAAATGAGAGAACTTGAAGTTAGCAACTGCAGCAGACTCTaGCAGACTGAAGATGAAGAA +
Preference number: 4 (lower is better)
Translates to: CPFNLPISATEMRELEVSNCSRL*QTEDEE
Trigger: TTCTTCATCTTCAGTCTGGCAGAGTCTGCTGCAGTT...GCTAACTTCAAGTTCTCTCATTTCTGTTGCAGAAATGGGCAAATTAAAAGGGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CCA 90 bp TCTATACATATACCTAAAGGTGTACTTGCATATATAAGAGCATGCATCCCTCCCACGAGAAAGCACCAATaGCCGCTATCTTTGATCTCT +
Preference number: 4 (lower is better)
Translates to: SIHIPKGVLAYIRACIPPTRKHQ*PLSLIS
Trigger: AGAGATCAAAGATAGCGGCCATTGGTGCTTTCTCGT...GGGAGGGATGCATGCTCTTATATATGCAAGTACACCTTTAGGTATATGTATAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CCA 90 bp CTAGAACCTACAGTCAGTTGCTCTGAGGACTACAGATGTTTTTGCATGCTTCTCCAAACTGCAAGAGCTTaGATATTGAATGAAAGTTCG +
Preference number: 4 (lower is better)
Translates to: LEPTVSCSEDYRCFCMLLQTARA*ILNESS
Trigger: CGAACTTTCATTCAATATCCAAGCTCTTGCAGTTTG...GAGAAGCATGCAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTAGGTTCTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CCA 90 bp ATTGATCTGTCTGTTTATTCTTACATACATGCAAGACTGAGACATATCTCCCTATGGCATCCTGAGGCATaGAGTCCAGAAGATTTCGTG +
Preference number: 4 (lower is better)
Translates to: IDLSVYSYIHARLRHISLWHPEA*SPEDFV
Trigger: CACGAAATCTTCTGGACTCCATGCCTCAGGATGCCA...TAGGGAGATATGTCTCAGTCTTGCATGTATGTAAGAATAAACAGACAGATCAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR GCA 90 bp CTAGAACCTACAGTCAGTTGCTCTGAGGACTACAGATGTTTTTGCATGCTTCTCTATATTTGCCCAAACTaGAAGAGCTTGGATATTGAA +
Preference number: 4 (lower is better)
Translates to: LEPTVSCSEDYRCFCMLLYICPN*KSLDIE
Trigger: TTCAATATCCAAGCTCTTGCAGTTTGGGCAAATATA...GAGAAGCATGCAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTAGGTTCTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CCA 90 bp TTTATGAGTTCCCCTCTAAATTTTCTGCATGGCTGGTTCCTTAATATTCAGGTTAAAGAGAACTGGTTCTaGAATTCAGAACCGTGCACG +
Preference number: 4 (lower is better)
Translates to: FMSSPLNFLHGWFLNIQVKENWF*NSEPCT
Trigger: CGTGCACGGTTCTGAATTCCAGAACCAGTTCTCTTT...AACCTGAATATTAAGGAACCAGCCATGCAGAAAATTTAGAGGGGAACTCATAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
3UTR CAA 72 bp GAAATGCTAATTTGGCAACGTGAGATAAACAGGATTTaGCATAAGGCCTGCATTTCAGCCATTAGCTCGTTT +
Preference number: 4 (lower is better)
Translates to: EMLIWQREINRI*HKACISAISSF
Trigger: AAACGAGCTAATGGCTGAAATGCAGGCCTTATGCAAAATCCTGTTTATCTCACGTTGCCAAATTAGCATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
3UTR CAA 72 bp GGCATAGTTCTTGTGCCAATTCACTGGGTGTTCCTCTaGCAAGTACACAATCTCCTTATAAAGTTTATATGC +
Preference number: 4 (lower is better)
Translates to: GIVLVPIHWVFL*QVHNLLIKFIC
Trigger: GCATATAAACTTTATAAGGAGATTGTGTACTTGCAAGAGGAACACCCAGTGAATTGGCACAAGAACTATGCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153765.8
3UTR CAA 72 bp AATTATAAACAGCTCATGGGCTCTTCAGGAAACGGTTaGACTGTTCCATTACAGAACCATTCTGAAAACACG +
Preference number: 4 (lower is better)
Translates to: NYKQLMGSSGNG*TVPLQNHSENT
Trigger: CGTGTTTTCAGAATGGTTCTGTAATGGAACAGTCAAACCGTTTCCTGAAGAGCCCATGAGCTGTTTATAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
CDS-3UTR GCA 90 bp GCTGTTATGCTCCAGCCAAGGAAAAGCAATAGCAAGTTAGGAAAAGCAACTTTTAGTTCTCTTCTTAGATaGTTGAGAGCAGCTATAATG +
Preference number: 4 (lower is better)
Translates to: AVMLQPRKSNSKLGKATFSSLLR*LRAAIM
Trigger: CATTATAGCTGCTCTCAAGCATCTAAGAAGAGAACT...AAAAGTTGCTTTTCCTAACTTGCTATTGCTTTTCCTTGGCTGGAGCATAACAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR GCA 90 bp TTTTGTAAAGCTCCAATGCCATTAAGATCAGCAGAAGGTCAAGAAGCAGCCAAACTTATAAAGTTTATATaGATGCGTGTAGAGTTGTGC +
Preference number: 4 (lower is better)
Translates to: FCKAPMPLRSAEGQEAAKLIKFI*MRVELC
Trigger: GCACAACTCTACACGCATGCATATAAACTTTATAAG...TTTGGCTGCTTCTTGACCTTCTGCTGATCTTAATGGCATTGGAGCTTTACAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR GCA 90 bp TGCCCTTTTAATTTGCCCATTTCTGCAACAGAAATGAGAGAACTTGAAGTTAGCAGTTCTCTTCTTAGATaGTTGAGAGCAGCTATAATG +
Preference number: 4 (lower is better)
Translates to: CPFNLPISATEMRELEVSSSLLR*LRAAIM
Trigger: CATTATAGCTGCTCTCAAGCATCTAAGAAGAGAACT...GCTAACTTCAAGTTCTCTCATTTCTGTTGCAGAAATGGGCAAATTAAAAGGGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp TCTATACATATACCTAAAGGTGTACTTGCATATATAAGAGCATGCATCCCTCCCTATATTTGCCCAAACTaGAAGAGCTTGGATATTGAA +
Preference number: 4 (lower is better)
Translates to: SIHIPKGVLAYIRACIPPYICPN*KSLDIE
Trigger: TTCAATATCCAAGCTCTTGCAGTTTGGGCAAATATA...GGGAGGGATGCATGCTCTTATATATGCAAGTACACCTTTAGGTATATGTATAGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR GCA 90 bp TGCCCTTTTAATTTGCCCATTTCTGCAACAGAAATGAGAGAACTTGAAGTTAGCCTTATAAAGTTTATATaGATGCGTGTAGAGTTGTGC +
Preference number: 4 (lower is better)
Translates to: CPFNLPISATEMRELEVSLIKFI*MRVELC
Trigger: GCACAACTCTACACGCATGCATATAAACTTTATAAG...GCTAACTTCAAGTTCTCTCATTTCTGTTGCAGAAATGGGCAAATTAAAAGGGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR GCA 90 bp ATTGATCTGTCTGTTTATTCTTACATACATGCAAGACTGAGACATATCTCCCTACTGTGGATCATTTTGTaGTTTCTGAGTGTAGAGATG +
Preference number: 4 (lower is better)
Translates to: IDLSVYSYIHARLRHISLLWIIL*FLSVEM
Trigger: CATCTCTACACTCAGAAAGCACAAAATGATCCACAG...TAGGGAGATATGTCTCAGTCTTGCATGTATGTAAGAATAAACAGACAGATCAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CCA 90 bp GCAGCTTCTTTTAAATCCCTTTATTTTGGAAAGGTTGGAGAATTACAGCAGTGTCAAACTGCAAGAGCTTaGATATTGAATGAAAGTTCG +
Preference number: 4 (lower is better)
Translates to: AASFKSLYFGKVGELQQCQTARA*ILNESS
Trigger: CGAACTTTCATTCAATATCCAAGCTCTTGCAGTTTG...ACACTGCTGTAATTCTCCAACCTTTCCAAAATAAAGGGATTTAAAAGAAGCTGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
3UTR CAA 72 bp GTAGCAGGTTTAATATTCCATCTAGCCAAAATGATTTaGCTACAAGGACTTTACCTTTGGTGGATATTTTGG +
Preference number: 4 (lower is better)
Translates to: VAGLIFHLAKMI*LQGLYLWWIFW
Trigger: CCAAAATATCCACCAAAGGTAAAGTCCTTGTAGCAAAATCATTTTGGCTAGATGGAATATTAAACCTGCTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS GCA 90 bp AAGATCCAGAACCGGAAAGAGAACTGGTTCTGGAATTCAGAACCGTaGACGGAGCTCCAGCGAGGGGACGCGGGGCCGGGACACCGAGGC +
Preference number: 5 (lower is better)
Translates to: KIQNRKENWFWNSEP*TELQRGDAGPGHRG
Trigger: GCCTCGGTGTCCCGGCCCCGCGTCCCCTCGCTGGAGCTCCGTGCACGGTTCTGAATTCCAGAACCAGTTCTCTTTCCGGTTCTGGATCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
CDS TCA 90 bp ACACCCCCGCAGCAAGAATCCCTCCAGCATGTGAGCCAGAAAGCCTaGAAACGGTGTAGAAGAGGAGCGAGGCGGCTACCGCCCCGAATA +
Preference number: 5 (lower is better)
Translates to: TPPQQESLQHVSQKA*KRCRRGARRLPPRI
Trigger: TATTCGGGGCGGTAGCCGCCTCGCTCCTCTTCTACACCGTTTTCAGGCTTTCTGGCTCACATGCTGGAGGGATTCTTGCTGCGGGGGTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000111735.10
ENSMUST00000226422.2
ENSMUST00000227440.2
CDS GCA 90 bp CTGGGTAACACTCCTTCCACAGGGTTCCACCGGTCCCCAGGAAAGTaGACTCCTGGCAAATGCCTCGCCATCTTGGGTAAGTACCACTCA +
Preference number: 5 (lower is better)
Translates to: LGNTPSTGFHRSPGK*TPGKCLAILGKYHS
Trigger: TGAGTGGTACTTACCCAAGATGGCGAGGCATTTGCCAGGAGTGCACTTTCCTGGGGACCGGTGGAACCCTGTGGAAGGAGTGTTACCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
ENSMUST00000226422.2
ENSMUST00000227440.2
CDS-3UTR CAA 90 bp GCACACCGAGTTGGGGAGATGGTAAAGGGCTTGCCACACAAGCAAGGAGAGCTGAGTCCTTTTTCCAGGTaGGGTCGCCTTCATGAATTC +
Preference number: 5 (lower is better)
Translates to: AHRVGEMVKGLPHKQGELSPFSR*GRLHEF
Trigger: GAATTCATGAAGGCGACCCAACCTGGAAAAAGGACT...CAGCTCTCCTTGCTTGTGTGGCAAGCCCTTTACCATCTCCCCAACTCGGTGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS TCA 90 bp ACACAAGCTGAGGCCACACGAGAAAGCACCAATGGCCGCTATCTTTaGTCTCTCCTTTGCGGCTGTTGCCTCCTCAAAACGCACAGTAAG +
Preference number: 5 (lower is better)
Translates to: TQAEATRESTNGRYL*SLLCGCCLLKTHSK
Trigger: CTTACTGTGCGTTTTGAGGAGGCAACAGCCGCAAAGGAGAGATCAAAGATAGCGGCCATTGGTGCTTTCTCGTGTGGCCTCAGCTTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
ENSMUST00000226422.2
ENSMUST00000227440.2
ENSMUST00000228697.2
CDS CCA 90 bp ACCGGTCCCCAGGAAAGTGCACTCCTGGCAAATGCCTCGCCATCTTaGGTAAGTACCACTCATAGGTCATCATTTCTTGATCCACCAGTG +
Preference number: 5 (lower is better)
Translates to: TGPQESALLANASPS*VSTTHRSSFLDPPV
Trigger: CACTGGTGGATCAAGAAATGATGACCTATGAGTGGTACTTACCCAAGATGGCGAGGCATTTGCCAGGAGTGCACTTTCCTGGGGACCGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
ENSMUST00000226422.2
ENSMUST00000227440.2
CDS-3UTR CAA 90 bp GCACACCGAGTTGGGGAGATGGTAAAGGGCTTGCCACACAAGCAAGGAGAGCTGAGCCCCACGAACAGATaGTTTAAGCTAAAAACCTCG +
Preference number: 5 (lower is better)
Translates to: AHRVGEMVKGLPHKQGELSPTNR*FKLKTS
Trigger: CGAGGTTTTTAGCTTAAACAATCTGTTCGTGGGGCT...CAGCTCTCCTTGCTTGTGTGGCAAGCCCTTTACCATCTCCCCAACTCGGTGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS GCA 90 bp CCCACAGGAGACAGCATCTGGTTTATATGCATGCGTGTAGAGTTGTaGTTTCACATCTGCAGGAACTGCAGCAGACTCTGCCAGACTGAA +
Preference number: 5 (lower is better)
Translates to: PTGDSIWFICMRVEL*FHICRNCSRLCQTE
Trigger: TTCAGTCTGGCAGAGTCTGCTGCAGTTCCTGCAGATGTGAAAGCACAACTCTACACGCATGCATATAAACCAGATGCTGTCTCCTGTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227440.2
CDS-3UTR CAA 90 bp TGCACACCAGCAAGAAAGAGGCTGTGGGCCACTCCAAAGGCTTTAATCTCACCACACTGGGTGTTCCTCTaGCAAGTACACAATCTCCTT +
Preference number: 5 (lower is better)
Translates to: CTPARKRLWATPKALISPHWVFL*QVHNLL
Trigger: AAGGAGATTGTGTACTTGCAAGAGGAACACCCAGTG...TGGTGAGATTAAAGCCTTTGGAGTGGCCCACAGCCTCTTTCTTGCTGGTGTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CAA 90 bp CTGTCCAGGCACTGCAGGCTCCAATGGACATCTTCAAATCCAGAGAATGGAGGAAGCCCCACGAACAGATaGTTTAAGCTAAAAACCTCG +
Preference number: 5 (lower is better)
Translates to: LSRHCRLQWTSSNPENGGSPTNR*FKLKTS
Trigger: CGAGGTTTTTAGCTTAAACAATCTGTTCGTGGGGCT...TCCTCCATTCTCTGGATTTGAAGATGTCCATTGGAGCCTGCAGTGCCTGGACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR CAA 90 bp ATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTGAGAGTCCTTTTTCCAGGTaGGGTCGCCTTCATGAATTC +
Preference number: 5 (lower is better)
Translates to: MSVETVPSQLEPTVSCSESPFSR*GRLHEF
Trigger: GAATTCATGAAGGCGACCCAACCTGGAAAAAGGACT...CTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CAA 90 bp CCAATAAGCATGGAGACATGTCTCCAATGTCTGTGGAGACAGTTCCTTCTCAGCAGTCCTTTTTCCAGGTaGGGTCGCCTTCATGAATTC +
Preference number: 5 (lower is better)
Translates to: PISMETCLQCLWRQFLLSSPFSR*GRLHEF
Trigger: GAATTCATGAAGGCGACCCAACCTGGAAAAAGGACT...GCTGAGAAGGAACTGTCTCCACAGACATTGGAGACATGTCTCCATGCTTATTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CAA 90 bp ATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTGAGTCGCTGTGGATCATTTaGTGCTTTCTGAGTGTAGAG +
Preference number: 5 (lower is better)
Translates to: MSVETVPSQLEPTVSCSESLWII*CFLSVE
Trigger: CTCTACACTCAGAAAGCACAAAATGATCCACAGCGA...CTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CAA 90 bp ATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTGAGGCAAGAGCTTGGATATaGAATGAAAGTTCGGTCTTC +
Preference number: 5 (lower is better)
Translates to: MSVETVPSQLEPTVSCSEARAWI*NESSVF
Trigger: GAAGACCGAACTTTCATTCAATATCCAAGCTCTTGC...CTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CAA 90 bp CTAGAACCTACAGTCAGTTGCTCTGAGGACTACAGATGTTTTTGCATGCTTCTCCACTGGGTGTTCCTCTaGCAAGTACACAATCTCCTT +
Preference number: 5 (lower is better)
Translates to: LEPTVSCSEDYRCFCMLLHWVFL*QVHNLL
Trigger: AAGGAGATTGTGTACTTGCAAGAGGAACACCCAGTG...GAGAAGCATGCAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTAGGTTCTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CAA 90 bp CTAGAACCTACAGTCAGTTGCTCTGAGGACTACAGATGTTTTTGCATGCTTCTCTCGCTGTGGATCATTTaGTGCTTTCTGAGTGTAGAG +
Preference number: 5 (lower is better)
Translates to: LEPTVSCSEDYRCFCMLLSLWII*CFLSVE
Trigger: CTCTACACTCAGAAAGCACAAAATGATCCACAGCGA...GAGAAGCATGCAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTAGGTTCTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CAA 90 bp GTGATCATGGTAGATGGAGAATTGAGAACACTTCTTTGCTGTGGGAAGACAGCATCGCTGTGGATCATTTaGTGCTTTCTGAGTGTAGAG +
Preference number: 5 (lower is better)
Translates to: VIMVDGELRTLLCCGKTASLWII*CFLSVE
Trigger: CTCTACACTCAGAAAGCACAAAATGATCCACAGCGA...TGCTGTCTTCCCACAGCAAAGAAGTGTTCTCAATTCTCCATCTACCATGATCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CAA 90 bp ATGTCTGTGGAGACAGTTCCTTCTCAGCTAGAACCTACAGTCAGTTGCTCTGAGTCTCTTCTTAGATGCTaGAGAGCAGCTATAATGTCT +
Preference number: 5 (lower is better)
Translates to: MSVETVPSQLEPTVSCSESLLRC*RAAIMS
Trigger: AGACATTATAGCTGCTCTCAAGCATCTAAGAAGAGA...CTCAGAGCAACTGACTGTAGGTTCTAGCTGAGAAGGAACTGTCTCCACAGACAT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS TCA 90 bp TTATGCATAATATATAGAGGACTATCGTGTGCTGATTACACAAGCTaGGGCCACACGAGAAAGCACCAATGGCCGCTATCTTTGATCTCT +
Preference number: 5 (lower is better)
Translates to: LCIIYRGLSCADYTS*GHTRKHQWPLSLIS
Trigger: AGAGATCAAAGATAGCGGCCATTGGTGCTTTCTCGTGTGGCCTCAGCTTGTGTAATCAGCACACGATAGTCCTCTATATATTATGCATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
ENSMUST00000226422.2
ENSMUST00000227440.2
ENSMUST00000228697.2
CDS-3UTR CAA 90 bp CTAGAACCTACAGTCAGTTGCTCTGAGGACTACAGATGTTTTTGCATGCTTCTCGTGAGTTCCTTCTCTTaGAGAAGTCGGAAAAGAATC +
Preference number: 5 (lower is better)
Translates to: LEPTVSCSEDYRCFCMLLVSSFS*RSRKRI
Trigger: GATTCTTTTCCGACTTCTCAAAGAGAAGGAACTCAC...GAGAAGCATGCAAAAACATCTGTAGTCCTCAGAGCAACTGACTGTAGGTTCTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CAA 90 bp ATTTCACTCAAAAGCCCTCGGCACTGGTCCTTAACCGCTTATGACATCACAAAGTCTCTTCTTAGATGCTaGAGAGCAGCTATAATGTCT +
Preference number: 5 (lower is better)
Translates to: ISLKSPRHWSLTAYDITKSLLRC*RAAIMS
Trigger: AGACATTATAGCTGCTCTCAAGCATCTAAGAAGAGA...CTTTGTGATGTCATAAGCGGTTAAGGACCAGTGCCGAGGGCTTTTGAGTGAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR CAA 90 bp GGCCACTCCAAAGGCTTTAATCTCACCAGTGTGCATTTTGCTGCCATGTCTATATCTCTTCTTAGATGCTaGAGAGCAGCTATAATGTCT +
Preference number: 5 (lower is better)
Translates to: GHSKGFNLTSVHFAAMSISLLRC*RAAIMS
Trigger: AGACATTATAGCTGCTCTCAAGCATCTAAGAAGAGA...TATAGACATGGCAGCAAAATGCACACTGGTGAGATTAAAGCCTTTGGAGTGGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CAA 90 bp CAACTCCACTCTCTTTTCTCCCTGAAGAAGAATCTAGAACCCACTAATCTGAGAGTGAGTTCCTTCTCTTaGAGAAGTCGGAAAAGAATC +
Preference number: 5 (lower is better)
Translates to: QLHSLFSLKKNLEPTNLRVSSFS*RSRKRI
Trigger: GATTCTTTTCCGACTTCTCAAAGAGAAGGAACTCAC...TCTCAGATTAGTGGGTTCTAGATTCTTCTTCAGGGAGAAAAGAGAGTGGAGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CAA 90 bp GGCCACTCCAAAGGCTTTAATCTCACCAGTGTGCATTTTGCTGCCATGTCTATACACGTTATTGGTTCTTaGGTCACAAATGCTGTAATT +
Preference number: 5 (lower is better)
Translates to: GHSKGFNLTSVHFAAMSIHVIGS*VTNAVI
Trigger: AATTACAGCATTTGTGACCAAAGAACCAATAACGTG...TATAGACATGGCAGCAAAATGCACACTGGTGAGATTAAAGCCTTTGGAGTGGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CAA 90 bp TGCCCTTTTAATTTGCCCATTTCTGCAACAGAAATGAGAGAACTTGAAGTTAGCGTGAGTTCCTTCTCTTaGAGAAGTCGGAAAAGAATC +
Preference number: 5 (lower is better)
Translates to: CPFNLPISATEMRELEVSVSSFS*RSRKRI
Trigger: GATTCTTTTCCGACTTCTCAAAGAGAAGGAACTCAC...GCTAACTTCAAGTTCTCTCATTTCTGTTGCAGAAATGGGCAAATTAAAAGGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CAA 90 bp TGCCCTTTTAATTTGCCCATTTCTGCAACAGAAATGAGAGAACTTGAAGTTAGCGCAAGAGCTTGGATATaGAATGAAAGTTCGGTCTTC +
Preference number: 5 (lower is better)
Translates to: CPFNLPISATEMRELEVSARAWI*NESSVF
Trigger: GAAGACCGAACTTTCATTCAATATCCAAGCTCTTGC...GCTAACTTCAAGTTCTCTCATTTCTGTTGCAGAAATGGGCAAATTAAAAGGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS-3UTR CAA 90 bp ATAATCACACATACAGGATGTTCGGAAACAAACACACTCAAGAATTGGTTTTTCCACTGGGTGTTCCTCTaGCAAGTACACAATCTCCTT +
Preference number: 5 (lower is better)
Translates to: IITHTGCSETNTLKNWFFHWVFL*QVHNLL
Trigger: AAGGAGATTGTGTACTTGCAAGAGGAACACCCAGTG...GAAAAACCAATTCTTGAGTGTGTTTGTTTCCGAACATCCTGTATGTGTGATTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111735.10
CDS-3UTR CAA 90 bp ATTGATCTGTCTGTTTATTCTTACATACATGCAAGACTGAGACATATCTCCCTAGCAAGAGCTTGGATATaGAATGAAAGTTCGGTCTTC +
Preference number: 5 (lower is better)
Translates to: IDLSVYSYIHARLRHISLARAWI*NESSVF
Trigger: GAAGACCGAACTTTCATTCAATATCCAAGCTCTTGC...TAGGGAGATATGTCTCAGTCTTGCATGTATGTAAGAATAAACAGACAGATCAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226422.2
CDS-3UTR CAA 90 bp TGCCCTTTTAATTTGCCCATTTCTGCAACAGAAATGAGAGAACTTGAAGTTAGCCACGTTATTGGTTCTTaGGTCACAAATGCTGTAATT +
Preference number: 5 (lower is better)
Translates to: CPFNLPISATEMRELEVSHVIGS*VTNAVI
Trigger: AATTACAGCATTTGTGACCAAAGAACCAATAACGTG...GCTAACTTCAAGTTCTCTCATTTCTGTTGCAGAAATGGGCAAATTAAAAGGGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
CDS GCA 72 bp CCGAGGCCAGCGAGAACGGCCACCACCGCATTGCTCTaGAGCCAGAATCGTTCCACCAGGCTGAACGTTCCA +
Preference number: 6 (lower is better)
Translates to: PRPARTATTALL*SQNRSTRLNVP
Trigger: TGGAACGTTCAGCCTGGTGGAACGATTCTGGCTGCAGAGCAATGCGGTGGTGGCCGTTCTCGCTGGCCTCGG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228697.2
CDS GCA 72 bp AACCGGAAAGAGAACTGGTTCTGGAATTCAGAACCGTaGACGGAGCTCCAGCGAGGGGACGCGGGGCCGGGA +
Preference number: 6 (lower is better)
Translates to: NRKENWFWNSEP*TELQRGDAGPG
Trigger: TCCCGGCCCCGCGTCCCCTCGCTGGAGCTCCGTGCACGGTTCTGAATTCCAGAACCAGTTCTCTTTCCGGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
CDS CAA 72 bp GCCAAACCGAGGCCAGCGAGAACGGCCACCACCGCATaGCTCTGCAGCCAGAATCGTTCCACCAGGCTGAAC +
Preference number: 6 (lower is better)
Translates to: AKPRPARTATTA*LCSQNRSTRLN
Trigger: GTTCAGCCTGGTGGAACGATTCTGGCTGCAGAGCAATGCGGTGGTGGCCGTTCTCGCTGGCCTCGGTTTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228697.2
CDS TCA 72 bp AGGCGGCTACCGCCCCGAATAAGCCACAGAGGAGATTaGCGCGGTAGGCGACGGAGCCAAATGGAAAGAGGG +
Preference number: 6 (lower is better)
Translates to: RRLPPRISHRGD*RGRRRSQMERG
Trigger: CCCTCTTTCCATTTGGCTCCGTCGCCTACCGCGTCAATCTCCTCTGTGGCTTATTCGGGGCGGTAGCCGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000111735.10
ENSMUST00000153765.8
ENSMUST00000226422.2
ENSMUST00000227440.2
CDS CAA 90 bp ACAAGCGTGGCCAAACCGAGGCCAGCGAGAACGGCCACCACCGCATaGCTCTGCAGCCAGAATCGTTCCACCAGGCTGAACGTTCCATAT +
Preference number: 6 (lower is better)
Translates to: TSVAKPRPARTATTA*LCSQNRSTRLNVPY
Trigger: ATATGGAACGTTCAGCCTGGTGGAACGATTCTGGCTGCAGAGCAATGCGGTGGTGGCCGTTCTCGCTGGCCTCGGTTTGGCCACGCTTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228697.2
CDS GCA 72 bp ACTCCTTCCACAGGGTTCCACCGGTCCCCAGGAAAGTaGACTCCTGGCAAATGCCTCGCCATCTTGGGTAAG +
Preference number: 6 (lower is better)
Translates to: TPSTGFHRSPGK*TPGKCLAILGK
Trigger: CTTACCCAAGATGGCGAGGCATTTGCCAGGAGTGCACTTTCCTGGGGACCGGTGGAACCCTGTGGAAGGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
ENSMUST00000226422.2
ENSMUST00000227440.2
CDS TCA 72 bp CAGCAAGAATCCCTCCAGCATGTGAGCCAGAAAGCCTaGAAACGGTGTAGAAGAGGAGCGAGGCGGCTACCG +
Preference number: 6 (lower is better)
Translates to: QQESLQHVSQKA*KRCRRGARRLP
Trigger: CGGTAGCCGCCTCGCTCCTCTTCTACACCGTTTTCAGGCTTTCTGGCTCACATGCTGGAGGGATTCTTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111735.10
ENSMUST00000226422.2
ENSMUST00000227440.2
CDS TCA 72 bp GAGGCCACACGAGAAAGCACCAATGGCCGCTATCTTTaGTCTCTCCTTTGCGGCTGTTGCCTCCTCAAAACG +
Preference number: 6 (lower is better)
Translates to: EATRESTNGRYL*SLLCGCCLLKT
Trigger: CGTTTTGAGGAGGCAACAGCCGCAAAGGAGAGATCAAAGATAGCGGCCATTGGTGCTTTCTCGTGTGGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
ENSMUST00000226422.2
ENSMUST00000227440.2
ENSMUST00000228697.2
CDS CCA 72 bp ACAGAGGAGATTGACGCGGTAGGCGACGGAGCCAAATaGAAAGAGGGTGATTGTCAGGCTAGCCAACAGTGT +
Preference number: 6 (lower is better)
Translates to: TEEIDAVGDGAK*KEGDCQASQQC
Trigger: ACACTGTTGGCTAGCCTGACAATCACCCTCTTTCCATTTGGCTCCGTCGCCTACCGCGTCAATCTCCTCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000111735.10
ENSMUST00000153765.8
ENSMUST00000226422.2
ENSMUST00000227440.2
CDS CAA 72 bp CGCACAGTAAGCGCCATGAGCAGCCCCACGAACAGATaGTTTAAGCTAAAAACCTCGGCTGCAATGGACCAC +
Preference number: 6 (lower is better)
Translates to: RTVSAMSSPTNR*FKLKTSAAMDH
Trigger: GTGGTCCATTGCAGCCGAGGTTTTTAGCTTAAACAATCTGTTCGTGGGGCTGCTCATGGCGCTTACTGTGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000111735.10
ENSMUST00000226422.2
ENSMUST00000227440.2
ENSMUST00000228697.2
CDS CAA 90 bp GTGCCCACAGGAGACAGCATCTGGTTTATATGCATGCGTGTAGAGTaGTGCTTTCACATCTGCAGGAACTGCAGCAGACTCTGCCAGACT +
Preference number: 6 (lower is better)
Translates to: VPTGDSIWFICMRVE*CFHICRNCSRLCQT
Trigger: AGTCTGGCAGAGTCTGCTGCAGTTCCTGCAGATGTGAAAGCACAACTCTACACGCATGCATATAAACCAGATGCTGTCTCCTGTGGGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227440.2
CDS CCA 72 bp AACACAGAGACCAAGATCCAGAACCGGAAAGAGAACTaGTTCTGGAATTCAGAACCGTGCACGGAGCTCCAG +
Preference number: 6 (lower is better)
Translates to: NTETKIQNRKEN*FWNSEPCTELQ
Trigger: CTGGAGCTCCGTGCACGGTTCTGAATTCCAGAACCAGTTCTCTTTCCGGTTCTGGATCTTGGTCTCTGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
CDS TCA 72 bp TCCGGGCAAAGTGGACAGTGGTTAAATTTCATCGGCTaGGCAGCTCGAGAACACAGAGACCAAGATCCAGAA +
Preference number: 6 (lower is better)
Translates to: SGQSGQWLNFIG*AAREHRDQDPE
Trigger: TTCTGGATCTTGGTCTCTGTGTTCTCGAGCTGCTCAGCCGATGAAATTTAACCACTGTCCACTTTGCCCGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226400.2
CDS GCA 72 bp GACAGCATCTGGTTTATATGCATGCGTGTAGAGTTGTaGTTTCACATCTGCAGGAACTGCAGCAGACTCTGC +
Preference number: 6 (lower is better)
Translates to: DSIWFICMRVEL*FHICRNCSRLC
Trigger: GCAGAGTCTGCTGCAGTTCCTGCAGATGTGAAAGCACAACTCTACACGCATGCATATAAACCAGATGCTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227440.2
CDS CAA 72 bp GGAGACAGCATCTGGTTTATATGCATGCGTGTAGAGTaGTGCTTTCACATCTGCAGGAACTGCAGCAGACTC +
Preference number: 6 (lower is better)
Translates to: GDSIWFICMRVE*CFHICRNCSRL
Trigger: GAGTCTGCTGCAGTTCCTGCAGATGTGAAAGCACAACTCTACACGCATGCATATAAACCAGATGCTGTCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227440.2
CDS TCA 72 bp ATATATAGAGGACTATCGTGTGCTGATTACACAAGCTaGGGCCACACGAGAAAGCACCAATGGCCGCTATCT +
Preference number: 6 (lower is better)
Translates to: IYRGLSCADYTS*GHTRKHQWPLS
Trigger: AGATAGCGGCCATTGGTGCTTTCTCGTGTGGCCTCAGCTTGTGTAATCAGCACACGATAGTCCTCTATATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000111735.10
ENSMUST00000124720.8
ENSMUST00000226422.2
ENSMUST00000227440.2
ENSMUST00000228697.2