RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMEM253 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000072571

Ensembl transcript IDs: ENSMUST00000100638.4, ENSMUST00000227295.2, ENSMUST00000228408.2

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGACCCGGATCCAAGGGAGACCTGGAGCACAACCGACGCGGATTCTaGGTTGGCTGGTGCAGCAACCCGGCTTGGAGTGGATGGGATTGT +
Preference number: 1 (lower is better)
Translates to: GPGSKGDLEHNRRGF*VGWCSNPAWSGWDC
Trigger: ACAATCCCATCCACTCCAAGCCGGGTTGCTGCACCAGCCAACCCAGAATCCGCGTCGGTTGTGCTCCAGGTCTCCCTTGGATCCGGGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
3UTR TCA 90 bp GTAGGTCACGGGGTAGCGGGGCATCCTGGGATTTGTAGTCTCGGGTaGATTAGGCAGGACCCGGATCCAAGGGAGACCTGGAGCACAACC +
Preference number: 1 (lower is better)
Translates to: VGHGVAGHPGICSLG*IRQDPDPRETWSTT
Trigger: GGTTGTGCTCCAGGTCTCCCTTGGATCCGGGTCCTGCCTAATTCACCCGAGACTACAAATCCCAGGATGCCCCGCTACCCCGTGACCTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
3UTR CCA 90 bp GACGCAGAAGTGCCTGGAGATGTCCCCCTTGGCGTAGGGGGACAGTaGCACCTGTCTTGCCCACTCACTCATCCGTCCTATTTCCTGTGC +
Preference number: 1 (lower is better)
Translates to: DAEVPGDVPLGVGGQ*HLSCPLTHPSYFLC
Trigger: GCACAGGAAATAGGACGGATGAGTGAGTGGGCAAGACAGGTGCCACTGTCCCCCTACGCCAAGGGGGACATCTCCAGGCACTTCTGCGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000227295.2
3UTR GCA 90 bp TGGAGAGGCAGGGAGGAAGAAGTCGAAGAATGCAAGGGAGGAAGCTaGTTGACGAGGCGTGAGGTGAGGGAGGTCTCTAGTCCAGAAATT +
Preference number: 1 (lower is better)
Translates to: WRGREEEVEECKGGS*LTRREVREVSSPEI
Trigger: AATTTCTGGACTAGAGACCTCCCTCACCTCACGCCTCGTCAAGCAGCTTCCTCCCTTGCATTCTTCGACTTCTTCCTCCCTGCCTCTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
3UTR TCA 90 bp AATTATCTCCCTCTAGTGGGGAAGAGAAGAGAAATGGGCCTGGGTTaGGGGGAAATTGAGGGCACTCTGGGCTTCAGGCACATTCTGGGG +
Preference number: 1 (lower is better)
Translates to: NYLPLVGKRREMGLG*GEIEGTLGFRHILG
Trigger: CCCCAGAATGTGCCTGAAGCCCAGAGTGCCCTCAATTTCCCCTCAACCCAGGCCCATTTCTCTTCTCTTCCCCACTAGAGGGAGATAATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
3UTR CAA 90 bp GCCTGGAGATGTCCCCCTTGGCGTAGGGGGACAGTGGCACCTGTCTaGCCCACTCACTCATCCGTCCTATTTCCTGTGCTAGCCACCACG +
Preference number: 2 (lower is better)
Translates to: AWRCPPWRRGTVAPV*PTHSSVLFPVLATT
Trigger: CGTGGTGGCTAGCACAGGAAATAGGACGGATGAGTGAGTGGGCAAGACAGGTGCCACTGTCCCCCTACGCCAAGGGGGACATCTCCAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000227295.2
3UTR CAA 90 bp CCGGATCCAAGGGAGACCTGGAGCACAACCGACGCGGATTCTGGGTaGGCTGGTGCAGCAACCCGGCTTGGAGTGGATGGGATTGTGAAA +
Preference number: 2 (lower is better)
Translates to: PDPRETWSTTDADSG*AGAATRLGVDGIVK
Trigger: TTTCACAATCCCATCCACTCCAAGCCGGGTTGCTGCACCAGCCAACCCAGAATCCGCGTCGGTTGTGCTCCAGGTCTCCCTTGGATCCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
3UTR-3UTR TCA 90 bp CCCGGATCCAAGGGAGACCTGGAGCACAACCGACGCGGATTCTGGGTTGGCTGGGTGAAAGGTGAACAGTaGGAGGAGGCAGATGTGAAA +
Preference number: 2 (lower is better)
Translates to: PGSKGDLEHNRRGFWVGWVKGEQ*EEADVK
Trigger: TTTCACATCTGCCTCCTCTCACTGTTCACCTTTCAC...CCAGCCAACCCAGAATCCGCGTCGGTTGTGCTCCAGGTCTCCCTTGGATCCGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
3UTR-3UTR TCA 90 bp TCTGGGTTGGCTGGTGCAGCAACCCGGCTTGGAGTGGATGGGATTGTGAAAGGTGAAATGGGCCTGGGTTaGGGGGAAATTGAGGGCACT +
Preference number: 2 (lower is better)
Translates to: SGLAGAATRLGVDGIVKGEMGLG*GEIEGT
Trigger: AGTGCCCTCAATTTCCCCTCAACCCAGGCCCATTTC...ACCTTTCACAATCCCATCCACTCCAAGCCGGGTTGCTGCACCAGCCAACCCAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
3UTR-3UTR TCA 90 bp TTCTGGGTTGGCTGGTGCAGCAACCCGGCTTGGAGTGGATGGGATTGTGAAAGGGAGGCAGATGTGAAATaGAGCTGGATGGAGAGGCAG +
Preference number: 2 (lower is better)
Translates to: FWVGWCSNPAWSGWDCEREADVK*SWMERQ
Trigger: CTGCCTCTCCATCCAGCTTCATTTCACATCTGCCTC...CCTTTCACAATCCCATCCACTCCAAGCCGGGTTGCTGCACCAGCCAACCCAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
3UTR-3UTR CCA 90 bp GAGGAAGAAGTCGAAGAATGCAAGGGAGGAAGCTGCTTGACGAGGCGTGAGGTGGAAGAGAAATGGGCCTaGGTTGAGGGGAAATTGAGG +
Preference number: 2 (lower is better)
Translates to: EEEVEECKGGSCLTRREVEEKWA*VEGKLR
Trigger: CCTCAATTTCCCCTCAACCCAGGCCCATTTCTCTTC...CACCTCACGCCTCGTCAAGCAGCTTCCTCCCTTGCATTCTTCGACTTCTTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
3UTR-3UTR CCA 90 bp ACAGTGAGAGGAGGCAGATGTGAAATGAAGCTGGATGGAGAGGCAGGGAGGAAGGCTTCAGGCACATTCTaGGGGAAGTCCAGTTATAGT +
Preference number: 2 (lower is better)
Translates to: TVRGGRCEMKLDGEAGRKASGTF*GKSSYS
Trigger: ACTATAACTGGACTTCCCCCAGAATGTGCCTGAAGC...CTTCCTCCCTGCCTCTCCATCCAGCTTCATTTCACATCTGCCTCCTCTCACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
3UTR-3UTR CCA 90 bp TACCTTCATGTTTTCCCCAAAGGTAAAGGCAAGCTACTTGGAAATGAAGGGTTTCCCCAGCACAGTTTCTaGTGCATGGTTTGTGCTCAC +
Preference number: 2 (lower is better)
Translates to: YLHVFPKGKGKLLGNEGFPQHSF*CMVCAH
Trigger: GTGAGCACAAACCATGCACCAGAAACTGTGCTGGGG...AAACCCTTCATTTCCAAGTAGCTTGCCTTTACCTTTGGGGAAAACATGAAGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000228408.2
3UTR-3UTR GCA 90 bp GGCAAGCTACTTGGAAATGAAGGGTTTTGCTTTGTTAATTTGTACATTTCTTTCCTGGTGCATGGTTTGTaGTCACTGAACATGAGTGGA +
Preference number: 2 (lower is better)
Translates to: GKLLGNEGFCFVNLYISFLVHGL*SLNMSG
Trigger: TCCACTCATGTTCAGTGAGCACAAACCATGCACCAG...GAAAGAAATGTACAAATTAACAAAGCAAAACCCTTCATTTCCAAGTAGCTTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228408.2
3UTR GCA 72 bp CTGGAGCACAACCGACGCGGATTCTGGGTTGGCTGGTaGAGCAACCCGGCTTGGAGTGGATGGGATTGTGAA +
Preference number: 3 (lower is better)
Translates to: LEHNRRGFWVGW*SNPAWSGWDCE
Trigger: TTCACAATCCCATCCACTCCAAGCCGGGTTGCTGCACCAGCCAACCCAGAATCCGCGTCGGTTGTGCTCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
3UTR GCA 72 bp CATTCTGGGGGAAGTCCAGTTATAGTCCAAGGGAGGTaGAAGACGCAGAAGTGCCTGGAGATGTCCCCCTTG +
Preference number: 3 (lower is better)
Translates to: HSGGSPVIVQGR*KTQKCLEMSPL
Trigger: CAAGGGGGACATCTCCAGGCACTTCTGCGTCTTGCACCTCCCTTGGACTATAACTGGACTTCCCCCAGAATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
3UTR GCA 72 bp AGGGAGGAAGAAGTCGAAGAATGCAAGGGAGGAAGCTaGTTGACGAGGCGTGAGGTGAGGGAGGTCTCTAGT +
Preference number: 3 (lower is better)
Translates to: REEEVEECKGGS*LTRREVREVSS
Trigger: ACTAGAGACCTCCCTCACCTCACGCCTCGTCAAGCAGCTTCCTCCCTTGCATTCTTCGACTTCTTCCTCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
3UTR CCA 72 bp GGGAAATTGAGGGCACTCTGGGCTTCAGGCACATTCTaGGGGAAGTCCAGTTATAGTCCAAGGGAGGTGCAA +
Preference number: 3 (lower is better)
Translates to: GKLRALWASGTF*GKSSYSPREVQ
Trigger: TTGCACCTCCCTTGGACTATAACTGGACTTCCCCCAGAATGTGCCTGAAGCCCAGAGTGCCCTCAATTTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
3UTR-3UTR CAA 90 bp TATAGTTCGCTTACCTTCATGTTTTCCCCAAAGGTAAAGGCAAGCTACTTGGAATTTCTGGTGCATGGTTaGTGCTCACTGAACATGAGT +
Preference number: 3 (lower is better)
Translates to: YSSLTFMFSPKVKASYLEFLVHG*CSLNMS
Trigger: ACTCATGTTCAGTGAGCACAAACCATGCACCAGAAA...TTCCAAGTAGCTTGCCTTTACCTTTGGGGAAAACATGAAGGTAAGCGAACTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228408.2
CDS-3UTR TCA 90 bp GACGCAGAAGTGCCTGGAGATGTCCCCCTTGGCGTAGGGGGACAGTGGCACCTGGCAGCCTTGACCTCTTaGAGTATCCAGGCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: DAEVPGDVPLGVGGQWHLAALTS*SIQASS
Trigger: AGAGGAAGCCTGGATACTTCAAGAGGTCAAGGCTGC...CAGGTGCCACTGTCCCCCTACGCCAAGGGGGACATCTCCAGGCACTTCTGCGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000100638.4
ENSMUST00000227295.2
CDS-3UTR TCA 90 bp GAAGTGCCTGGAGATGTCCCCCTTGGCGTAGGGGGACAGTGGCACCTGTCTTGCCCGGTACTGCAGCCTTaGCCTCTTGAAGTATCCAGG +
Preference number: 4 (lower is better)
Translates to: EVPGDVPLGVGGQWHLSCPVLQP*PLEVSR
Trigger: CCTGGATACTTCAAGAGGTCAAGGCTGCAGTACCGG...GCAAGACAGGTGCCACTGTCCCCCTACGCCAAGGGGGACATCTCCAGGCACTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000100638.4
ENSMUST00000227295.2
3UTR CAA 72 bp TGTCCCCCTTGGCGTAGGGGGACAGTGGCACCTGTCTaGCCCACTCACTCATCCGTCCTATTTCCTGTGCTA +
Preference number: 4 (lower is better)
Translates to: CPPWRRGTVAPV*PTHSSVLFPVL
Trigger: TAGCACAGGAAATAGGACGGATGAGTGAGTGGGCAAGACAGGTGCCACTGTCCCCCTACGCCAAGGGGGACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000227295.2
CDS-3UTR GCA 90 bp CTATTTCCTGTGCTAGCCACCACGGGACCATTCTCCAAACCAGAAACCTCCTCCGGGCCAAAGTGGCAGTaGTGTGACCAGGTGACAGGC +
Preference number: 4 (lower is better)
Translates to: LFPVLATTGPFSKPETSSGPKWQ*CDQVTG
Trigger: GCCTGTCACCTGGTCACAGCACTGCCACTTTGGCCC...GGAGGAGGTTTCTGGTTTGGAGAATGGTCCCGTGGTGGCTAGCACAGGAAATAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227295.2
3UTR CAA 72 bp GGAAGAGAAGAGAAATGGGCCTGGGTTGAGGGGAAATaGAGGGCACTCTGGGCTTCAGGCACATTCTGGGGG +
Preference number: 4 (lower is better)
Translates to: GREEKWAWVEGK*RALWASGTFWG
Trigger: CCCCCAGAATGTGCCTGAAGCCCAGAGTGCCCTCAATTTCCCCTCAACCCAGGCCCATTTCTCTTCTCTTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS-3UTR TCA 90 bp AAGGGAGACCTGGAGCACAACCGACGCGGATTCTGGGTTGGCTGGTGCAGCAACGGTCAAGCAGGAAACTaGGATAGTAAAGGGGACCAT +
Preference number: 4 (lower is better)
Translates to: KGDLEHNRRGFWVGWCSNGQAGN*DSKGDH
Trigger: ATGGTCCCCTTTACTATCTCAGTTTCCTGCTTGACC...GTTGCTGCACCAGCCAACCCAGAATCCGCGTCGGTTGTGCTCCAGGTCTCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS-3UTR TCA 90 bp GAGGAAGAAGTCGAAGAATGCAAGGGAGGAAGCTGCTTGACGAGGCGTGAGGTGCCGGTACTGCAGCCTTaGCCTCTTGAAGTATCCAGG +
Preference number: 4 (lower is better)
Translates to: EEEVEECKGGSCLTRREVPVLQP*PLEVSR
Trigger: CCTGGATACTTCAAGAGGTCAAGGCTGCAGTACCGG...CACCTCACGCCTCGTCAAGCAGCTTCCTCCCTTGCATTCTTCGACTTCTTCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS-3UTR GCA 90 bp ACATTCTGGGGGAAGTCCAGTTATAGTCCAAGGGAGGTGCAAGACGCAGAAGTGGGGCCAAAGTGGCAGTaGTGTGACCAGGTGACAGGC +
Preference number: 4 (lower is better)
Translates to: TFWGKSSYSPREVQDAEVGPKWQ*CDQVTG
Trigger: GCCTGTCACCTGGTCACAGCACTGCCACTTTGGCCC...CACTTCTGCGTCTTGCACCTCCCTTGGACTATAACTGGACTTCCCCCAGAATGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS-3UTR CCA 90 bp GAAGTGCCTGGAGATGTCCCCCTTGGCGTAGGGGGACAGTGGCACCTGTCTTGCGGGTCTCTCCTGTCTTaGCTGATTAGCATTTTGATC +
Preference number: 4 (lower is better)
Translates to: EVPGDVPLGVGGQWHLSCGSLLS*LISILI
Trigger: GATCAAAATGCTAATCAGCCAAGACAGGAGAGACCC...GCAAGACAGGTGCCACTGTCCCCCTACGCCAAGGGGGACATCTCCAGGCACTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000100638.4
ENSMUST00000227295.2
3UTR CAA 72 bp GAGGAAGAAGTCGAAGAATGCAAGGGAGGAAGCTGCTaGACGAGGCGTGAGGTGAGGGAGGTCTCTAGTCCA +
Preference number: 4 (lower is better)
Translates to: EEEVEECKGGSC*TRREVREVSSP
Trigger: TGGACTAGAGACCTCCCTCACCTCACGCCTCGTCAAGCAGCTTCCTCCCTTGCATTCTTCGACTTCTTCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS-3UTR TCA 90 bp GGGAAGTCCAGTTATAGTCCAAGGGAGGTGCAAGACGCAGAAGTGCCTGGAGATGCAGCCTTGACCTCTTaGAGTATCCAGGCTTCCTCT +
Preference number: 4 (lower is better)
Translates to: GKSSYSPREVQDAEVPGDAALTS*SIQASS
Trigger: AGAGGAAGCCTGGATACTTCAAGAGGTCAAGGCTGC...ATCTCCAGGCACTTCTGCGTCTTGCACCTCCCTTGGACTATAACTGGACTTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS-3UTR GCA 90 bp CTATTTCCTGTGCTAGCCACCACGGGACCATTCTCCAAACCAGAAACCTCCTCCGCCCCTGTTTTCTTCTaGCCTTCCGCCTTCATTTAC +
Preference number: 4 (lower is better)
Translates to: LFPVLATTGPFSKPETSSAPVFF*PSAFIY
Trigger: GTAAATGAAGGCGGAAGGGCAGAAGAAAACAGGGGC...GGAGGAGGTTTCTGGTTTGGAGAATGGTCCCGTGGTGGCTAGCACAGGAAATAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227295.2
CDS-3UTR TCA 90 bp CCTATTTCCTGTGCTAGCCACCACGGGACCATTCTCCAAACCAGAAACCTCCTCGGTCAAGCAGGAAACTaGGATAGTAAAGGGGACCAT +
Preference number: 4 (lower is better)
Translates to: PISCASHHGTILQTRNLLGQAGN*DSKGDH
Trigger: ATGGTCCCCTTTACTATCTCAGTTTCCTGCTTGACC...GAGGAGGTTTCTGGTTTGGAGAATGGTCCCGTGGTGGCTAGCACAGGAAATAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227295.2
CDS-3UTR TCA 90 bp GCACATTCTGGGGGAAGTCCAGTTATAGTCCAAGGGAGGTGCAAGACGCAGAAGAGCCCAAGATCAGGTTaGAGGTGTTGGATATCATCA +
Preference number: 4 (lower is better)
Translates to: AHSGGSPVIVQGRCKTQKSPRSG*RCWISS
Trigger: TGATGATATCCAACACCTTCAACCTGATCTTGGGCT...CTTCTGCGTCTTGCACCTCCCTTGGACTATAACTGGACTTCCCCCAGAATGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS-3UTR CCA 90 bp AGTTATAGTCCAAGGGAGGTGCAAGACGCAGAAGTGCCTGGAGATGTCCCCCTTGGGTCTCTCCTGTCTTaGCTGATTAGCATTTTGATC +
Preference number: 4 (lower is better)
Translates to: SYSPREVQDAEVPGDVPLGSLLS*LISILI
Trigger: GATCAAAATGCTAATCAGCCAAGACAGGAGAGACCC...AAGGGGGACATCTCCAGGCACTTCTGCGTCTTGCACCTCCCTTGGACTATAACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS-3UTR CCA 90 bp AAGGTAAAGGCAAGCTACTTGGAAATGAAGGGTTTTGCTTTGTTAATTTGTACAGGGTCTCTCCTGTCTTaGCTGATTAGCATTTTGATC +
Preference number: 4 (lower is better)
Translates to: KVKASYLEMKGFALLICTGSLLS*LISILI
Trigger: GATCAAAATGCTAATCAGCCAAGACAGGAGAGACCC...TGTACAAATTAACAAAGCAAAACCCTTCATTTCCAAGTAGCTTGCCTTTACCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228408.2
CDS GCA 90 bp GCGGGGCAACCTGGCCTCACCGCCAGCACCAGTAGGCGTCCACTTTaGTTGTGTCTTGCCCAGTGCTGTAGCTTTTCCAGGCGAACGCTG +
Preference number: 5 (lower is better)
Translates to: AGQPGLTASTSRRPL*LCLAQCCSFSRRTL
Trigger: CAGCGTTCGCCTGGAAAAGCTACAGCACTGGGCAAGACACAAGCAAAGTGGACGCCTACTGGTGCTGGCGGTGAGGCCAGGTTGCCCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228408.2
CDS TCA 90 bp TCAGCAAGAACAGGGCATATGTGGAGACCAGCACTCCCGCTAGGGTaGAGGCCTCCGCGCTCAGCTCCAGCACCAGCAACCCTGTCGACT +
Preference number: 5 (lower is better)
Translates to: SARTGHMWRPALPLG*RPPRSAPAPATLST
Trigger: AGTCGACAGGGTTGCTGGTGCTGGAGCTGAGCGCGGAGGCCTTCACCCTAGCGGGAGTGCTGGTCTCCACATATGCCCTGTTCTTGCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100638.4
ENSMUST00000227295.2
CDS GCA 90 bp GCCAGCCACACTTGGCTCACCGCCAGCACCAGTAGGCGTCCACTTTaGTTGTGTCTTGCCCAGTGCTGTAGCTTTTCCAGGCGAACGCTG +
Preference number: 5 (lower is better)
Translates to: ASHTWLTASTSRRPL*LCLAQCCSFSRRTL
Trigger: CAGCGTTCGCCTGGAAAAGCTACAGCACTGGGCAAGACACAAGCAAAGTGGACGCCTACTGGTGCTGGCGGTGAGCCAAGTGTGGCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100638.4
ENSMUST00000227295.2
CDS CCA 90 bp AAGGGTGATAATGCCAGTGAGGAGGCCCGAGGCTCCGGGCCAAAGTaGCAGTGCTGTGACCAGGTGACAGGCAGAGGTCAAGCAGGAAAC +
Preference number: 5 (lower is better)
Translates to: KGDNASEEARGSGPK*QCCDQVTGRGQAGN
Trigger: GTTTCCTGCTTGACCTCTGCCTGTCACCTGGTCACAGCACTGCCACTTTGGCCCGGAGCCTCGGGCCTCCTCACTGGCATTATCACCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100638.4
ENSMUST00000227295.2
CDS-3UTR CAA 90 bp CCCGGATCCAAGGGAGACCTGGAGCACAACCGACGCGGATTCTGGGTTGGCTGGTGCAGCCTTGACCTCTaGAAGTATCCAGGCTTCCTC +
Preference number: 5 (lower is better)
Translates to: PGSKGDLEHNRRGFWVGWCSLDL*KYPGFL
Trigger: GAGGAAGCCTGGATACTTCAAGAGGTCAAGGCTGCA...CCAGCCAACCCAGAATCCGCGTCGGTTGTGCTCCAGGTCTCCCTTGGATCCGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS-3UTR CAA 90 bp GGAGCACAACCGACGCGGATTCTGGGTTGGCTGGTGCAGCAACCCGGCTTGGAGATCAGGTTGAAGGTGTaGGATATCATCATGGCCCGC +
Preference number: 5 (lower is better)
Translates to: GAQPTRILGWLVQQPGLEIRLKV*DIIMAR
Trigger: GCGGGCCATGATGATATCCAACACCTTCAACCTGAT...CTCCAAGCCGGGTTGCTGCACCAGCCAACCCAGAATCCGCGTCGGTTGTGCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS GCA 90 bp GAAACCTCCTCCATCTCAGAGAGGCCCTCCTGTAGCTCCCGGTACTaGAGCCTTGACCTCTTGAAGTATCCAGGCTTCCTCTGGCTCAGC +
Preference number: 5 (lower is better)
Translates to: ETSSISERPSCSSRY*SLDLLKYPGFLWLS
Trigger: GCTGAGCCAGAGGAAGCCTGGATACTTCAAGAGGTCAAGGCTGCAGTACCGGGAGCTACAGGAGGGCCTCTCTGAGATGGAGGAGGTTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS-3UTR CAA 90 bp GGAGGTGCAAGACGCAGAAGTGCCTGGAGATGTCCCCCTTGGCGTAGGGGGACACACTTTGCTTGTGTCTaGCCCAGTGCTGTAGCTTTT +
Preference number: 5 (lower is better)
Translates to: GGARRRSAWRCPPWRRGTHFACV*PSAVAF
Trigger: AAAAGCTACAGCACTGGGCAAGACACAAGCAAAGTG...TGTCCCCCTACGCCAAGGGGGACATCTCCAGGCACTTCTGCGTCTTGCACCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS TCA 90 bp TGGCAGTGCTGTGACCAGGTGACAGGCAGAGGTCAAGCAGGAAACTaGGATAGTAAAGGGGACCATAGCTATTGCCAGCCACACTTGGCT +
Preference number: 5 (lower is better)
Translates to: WQCCDQVTGRGQAGN*DSKGDHSYCQPHLA
Trigger: AGCCAAGTGTGGCTGGCAATAGCTATGGTCCCCTTTACTATCTCAGTTTCCTGCTTGACCTCTGCCTGTCACCTGGTCACAGCACTGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100638.4
ENSMUST00000227295.2
CDS GCA 90 bp TTCTGCCCTTCCGCCTTCATTTACCAGTACCTTCCAGATGCAAGGTaGTCTTCGGAGTTCAAGGGTGATAATGCCAGTGAGGAGGCCCGA +
Preference number: 5 (lower is better)
Translates to: FCPSAFIYQYLPDAR*SSEFKGDNASEEAR
Trigger: TCGGGCCTCCTCACTGGCATTATCACCCTTGAACTCCGAAGAGCACCTTGCATCTGGAAGGTACTGGTAAATGAAGGCGGAAGGGCAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227295.2
CDS-3UTR CAA 90 bp TTTCCTGTGCTAGCCACCACGGGACCATTCTCCAAACCAGAAACCTCCTCCATCTGCAGCCTTGACCTCTaGAAGTATCCAGGCTTCCTC +
Preference number: 5 (lower is better)
Translates to: FPVLATTGPFSKPETSSICSLDL*KYPGFL
Trigger: GAGGAAGCCTGGATACTTCAAGAGGTCAAGGCTGCA...GATGGAGGAGGTTTCTGGTTTGGAGAATGGTCCCGTGGTGGCTAGCACAGGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227295.2
CDS CCA 90 bp GAAACTGAGATAGTAAAGGGGACCATAGCTATTGCCAGCCACACTTaGCTCACCGCCAGCACCAGTAGGCGTCCACTTTGCTTGTGTCTT +
Preference number: 5 (lower is better)
Translates to: ETEIVKGTIAIASHT*LTASTSRRPLCLCL
Trigger: AAGACACAAGCAAAGTGGACGCCTACTGGTGCTGGCGGTGAGCCAAGTGTGGCTGGCAATAGCTATGGTCCCCTTTACTATCTCAGTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100638.4
ENSMUST00000227295.2
CDS-3UTR CAA 90 bp TTCTGGGTTGGCTGGTGCAGCAACCCGGCTTGGAGTGGATGGGATTGTGAAAGGAAGCCCAAGATCAGGTaGAAGGTGTTGGATATCATC +
Preference number: 5 (lower is better)
Translates to: FWVGWCSNPAWSGWDCERKPKIR*KVLDII
Trigger: GATGATATCCAACACCTTCAACCTGATCTTGGGCTT...CCTTTCACAATCCCATCCACTCCAAGCCGGGTTGCTGCACCAGCCAACCCAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS TCA 90 bp TCTTCATCACCTCTATCACCACCGCAACGAAGCCCAAGATCAGGTTaGAGGTGTTGGATATCATCATGGCCCGCACCTTCCAGATGCAAG +
Preference number: 5 (lower is better)
Translates to: SSSPLSPPQRSPRSG*RCWISSWPAPSRCK
Trigger: CTTGCATCTGGAAGGTGCGGGCCATGATGATATCCAACACCTTCAACCTGATCTTGGGCTTCGTTGCGGTGGTGATAGAGGTGATGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS-3UTR CAA 90 bp ATTTCCTGTGCTAGCCACCACGGGACCATTCTCCAAACCAGAAACCTCCTCCATCACTTTGCTTGTGTCTaGCCCAGTGCTGTAGCTTTT +
Preference number: 5 (lower is better)
Translates to: ISCASHHGTILQTRNLLHHFACV*PSAVAF
Trigger: AAAAGCTACAGCACTGGGCAAGACACAAGCAAAGTG...ATGGAGGAGGTTTCTGGTTTGGAGAATGGTCCCGTGGTGGCTAGCACAGGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227295.2
CDS-3UTR CAA 90 bp TTCGCTTACCTTCATGTTTTCCCCAAAGGTAAAGGCAAGCTACTTGGAAATGAACACTTTGCTTGTGTCTaGCCCAGTGCTGTAGCTTTT +
Preference number: 5 (lower is better)
Translates to: FAYLHVFPKGKGKLLGNEHFACV*PSAVAF
Trigger: AAAAGCTACAGCACTGGGCAAGACACAAGCAAAGTG...TTCATTTCCAAGTAGCTTGCCTTTACCTTTGGGGAAAACATGAAGGTAAGCGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228408.2
CDS TCA 72 bp ACAGGGCATATGTGGAGACCAGCACTCCCGCTAGGGTaGAGGCCTCCGCGCTCAGCTCCAGCACCAGCAACC +
Preference number: 6 (lower is better)
Translates to: TGHMWRPALPLG*RPPRSAPAPAT
Trigger: GGTTGCTGGTGCTGGAGCTGAGCGCGGAGGCCTTCACCCTAGCGGGAGTGCTGGTCTCCACATATGCCCTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100638.4
ENSMUST00000227295.2
CDS CCA 72 bp TCCGCGCTCAGCTCCAGCACCAGCAACCCTGTCGACTaGGAGGAGTCCATAGAGGCAGTTCCCAAGGCTGTC +
Preference number: 6 (lower is better)
Translates to: SALSSSTSNPVD*EESIEAVPKAV
Trigger: GACAGCCTTGGGAACTGCCTCTATGGACTCCTCCCAGTCGACAGGGTTGCTGGTGCTGGAGCTGAGCGCGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS CAA 90 bp GGGCAACCTGGCCTCACCGCCAGCACCAGTAGGCGTCCACTTTGCTaGTGTCTTGCCCAGTGCTGTAGCTTTTCCAGGCGAACGCTGGGT +
Preference number: 6 (lower is better)
Translates to: GQPGLTASTSRRPLC*CLAQCCSFSRRTLG
Trigger: ACCCAGCGTTCGCCTGGAAAAGCTACAGCACTGGGCAAGACACAAGCAAAGTGGACGCCTACTGGTGCTGGCGGTGAGGCCAGGTTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228408.2
CDS CAA 90 bp CTGGCCTCACCGCCAGCACCAGTAGGCGTCCACTTTGCTTGTGTCTaGCCCAGTGCTGTAGCTTTTCCAGGCGAACGCTGGGTCTCTCCT +
Preference number: 6 (lower is better)
Translates to: LASPPAPVGVHFACV*PSAVAFPGERWVSP
Trigger: AGGAGAGACCCAGCGTTCGCCTGGAAAAGCTACAGCACTGGGCAAGACACAAGCAAAGTGGACGCCTACTGGTGCTGGCGGTGAGGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228408.2
CDS GCA 72 bp CCTGGCCTCACCGCCAGCACCAGTAGGCGTCCACTTTaGTTGTGTCTTGCCCAGTGCTGTAGCTTTTCCAGG +
Preference number: 6 (lower is better)
Translates to: PGLTASTSRRPL*LCLAQCCSFSR
Trigger: CCTGGAAAAGCTACAGCACTGGGCAAGACACAAGCAAAGTGGACGCCTACTGGTGCTGGCGGTGAGGCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228408.2
CDS CAA 72 bp CCGCCAGCACCAGTAGGCGTCCACTTTGCTTGTGTCTaGCCCAGTGCTGTAGCTTTTCCAGGCGAACGCTGG +
Preference number: 6 (lower is better)
Translates to: PPAPVGVHFACV*PSAVAFPGERW
Trigger: CCAGCGTTCGCCTGGAAAAGCTACAGCACTGGGCAAGACACAAGCAAAGTGGACGCCTACTGGTGCTGGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100638.4
ENSMUST00000227295.2
ENSMUST00000228408.2
CDS CAA 90 bp CTTGGCTCACCGCCAGCACCAGTAGGCGTCCACTTTGCTTGTGTCTaGCCCAGTGCTGTAGCTTTTCCAGGCGAACGCTGGGTCTCTCCT +
Preference number: 6 (lower is better)
Translates to: LGSPPAPVGVHFACV*PSAVAFPGERWVSP
Trigger: AGGAGAGACCCAGCGTTCGCCTGGAAAAGCTACAGCACTGGGCAAGACACAAGCAAAGTGGACGCCTACTGGTGCTGGCGGTGAGCCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100638.4
ENSMUST00000227295.2
CDS CAA 90 bp AGCCACACTTGGCTCACCGCCAGCACCAGTAGGCGTCCACTTTGCTaGTGTCTTGCCCAGTGCTGTAGCTTTTCCAGGCGAACGCTGGGT +
Preference number: 6 (lower is better)
Translates to: SHTWLTASTSRRPLC*CLAQCCSFSRRTLG
Trigger: ACCCAGCGTTCGCCTGGAAAAGCTACAGCACTGGGCAAGACACAAGCAAAGTGGACGCCTACTGGTGCTGGCGGTGAGCCAAGTGTGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100638.4
ENSMUST00000227295.2
CDS GCA 72 bp ACTTGGCTCACCGCCAGCACCAGTAGGCGTCCACTTTaGTTGTGTCTTGCCCAGTGCTGTAGCTTTTCCAGG +
Preference number: 6 (lower is better)
Translates to: TWLTASTSRRPL*LCLAQCCSFSR
Trigger: CCTGGAAAAGCTACAGCACTGGGCAAGACACAAGCAAAGTGGACGCCTACTGGTGCTGGCGGTGAGCCAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100638.4
ENSMUST00000227295.2
CDS GCA 72 bp TCCATCTCAGAGAGGCCCTCCTGTAGCTCCCGGTACTaGAGCCTTGACCTCTTGAAGTATCCAGGCTTCCTC +
Preference number: 6 (lower is better)
Translates to: SISERPSCSSRY*SLDLLKYPGFL
Trigger: GAGGAAGCCTGGATACTTCAAGAGGTCAAGGCTGCAGTACCGGGAGCTACAGGAGGGCCTCTCTGAGATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS CAA 72 bp CCCTCCTGTAGCTCCCGGTACTGCAGCCTTGACCTCTaGAAGTATCCAGGCTTCCTCTGGCTCAGCAAGAAC +
Preference number: 6 (lower is better)
Translates to: PSCSSRYCSLDL*KYPGFLWLSKN
Trigger: GTTCTTGCTGAGCCAGAGGAAGCCTGGATACTTCAAGAGGTCAAGGCTGCAGTACCGGGAGCTACAGGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100638.4
ENSMUST00000227295.2
CDS CAA 90 bp TCAGAGAGGCCCTCCTGTAGCTCCCGGTACTGCAGCCTTGACCTCTaGAAGTATCCAGGCTTCCTCTGGCTCAGCAAGAACAGGGCATAT +
Preference number: 6 (lower is better)
Translates to: SERPSCSSRYCSLDL*KYPGFLWLSKNRAY
Trigger: ATATGCCCTGTTCTTGCTGAGCCAGAGGAAGCCTGGATACTTCAAGAGGTCAAGGCTGCAGTACCGGGAGCTACAGGAGGGCCTCTCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100638.4
ENSMUST00000227295.2
CDS TCA 72 bp CCTCTATCACCACCGCAACGAAGCCCAAGATCAGGTTaGAGGTGTTGGATATCATCATGGCCCGCACCTTCC +
Preference number: 6 (lower is better)
Translates to: PLSPPQRSPRSG*RCWISSWPAPS
Trigger: GGAAGGTGCGGGCCATGATGATATCCAACACCTTCAACCTGATCTTGGGCTTCGTTGCGGTGGTGATAGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS GCA 72 bp GGATATCATCATGGCCCGCACCTTCCAGATGCAAGGTaGTCTTCGGAGTTCAAGGGTGATAATGCCAGTGAG +
Preference number: 6 (lower is better)
Translates to: GYHHGPHLPDAR*SSEFKGDNASE
Trigger: CTCACTGGCATTATCACCCTTGAACTCCGAAGAGCACCTTGCATCTGGAAGGTGCGGGCCATGATGATATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS CAA 72 bp ACCACCGCAACGAAGCCCAAGATCAGGTTGAAGGTGTaGGATATCATCATGGCCCGCACCTTCCAGATGCAA +
Preference number: 6 (lower is better)
Translates to: TTATKPKIRLKV*DIIMARTFQMQ
Trigger: TTGCATCTGGAAGGTGCGGGCCATGATGATATCCAACACCTTCAACCTGATCTTGGGCTTCGTTGCGGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS CAA 72 bp ACCTCTATCACCACCGCAACGAAGCCCAAGATCAGGTaGAAGGTGTTGGATATCATCATGGCCCGCACCTTC +
Preference number: 6 (lower is better)
Translates to: TSITTATKPKIR*KVLDIIMARTF
Trigger: GAAGGTGCGGGCCATGATGATATCCAACACCTTCAACCTGATCTTGGGCTTCGTTGCGGTGGTGATAGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS CAA 90 bp ACCTCTATCACCACCGCAACGAAGCCCAAGATCAGGTTGAAGGTGTaGGATATCATCATGGCCCGCACCTTCCAGATGCAAGGTGCTCTT +
Preference number: 6 (lower is better)
Translates to: TSITTATKPKIRLKV*DIIMARTFQMQGAL
Trigger: AAGAGCACCTTGCATCTGGAAGGTGCGGGCCATGATGATATCCAACACCTTCAACCTGATCTTGGGCTTCGTTGCGGTGGTGATAGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS CAA 90 bp GTCTTCATCACCTCTATCACCACCGCAACGAAGCCCAAGATCAGGTaGAAGGTGTTGGATATCATCATGGCCCGCACCTTCCAGATGCAA +
Preference number: 6 (lower is better)
Translates to: VFITSITTATKPKIR*KVLDIIMARTFQMQ
Trigger: TTGCATCTGGAAGGTGCGGGCCATGATGATATCCAACACCTTCAACCTGATCTTGGGCTTCGTTGCGGTGGTGATAGAGGTGATGAAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100638.4
CDS GCA 72 bp TCCGCCTTCATTTACCAGTACCTTCCAGATGCAAGGTaGTCTTCGGAGTTCAAGGGTGATAATGCCAGTGAG +
Preference number: 6 (lower is better)
Translates to: SAFIYQYLPDAR*SSEFKGDNASE
Trigger: CTCACTGGCATTATCACCCTTGAACTCCGAAGAGCACCTTGCATCTGGAAGGTACTGGTAAATGAAGGCGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227295.2