Pregenerated sensors for TMEM239 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049692Ensembl transcript IDs: ENSMUST00000055421.6
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACACACACACACACACACTATCATGATTGGCCTCTTTCCCATTTCTaGGAGGTGAGTGAGGTGAGATCCCTAGCTATCGTCCTGGCAGTG | + |
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Preference number: 1 (lower is better) Translates to: THTHTHYHDWPLSHF*EVSEVRSLAIVLAV Trigger: CACTGCCAGGACGATAGCTAGGGATCTCACCTCACTCACCTCTCAGAAATGGGAAAGAGGCCAATCATGATAGTGTGTGTGTGTGTGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| 3UTR-3UTR TCA 90 bp | CAGACAAGTCCAGGGGTATGTAGGTGGAAATTCTCAGGAAGCCTGAAGCTGGTAGCCAGGAAGACCAAGTaGTGTTACCACATCCATACG | + |
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Preference number: 2 (lower is better) Translates to: QTSPGVCRWKFSGSLKLVARKTK*CYHIHT Trigger: CGTATGGATGTGGTAACATCACTTGGTCTTCCTGGC...TACCAGCTTCAGGCTTCCTGAGAATTTCCACCTACATACCCCTGGACTTGTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| 3UTR CCA 72 bp | CCGGGACAAATCCAGACAAGTCCAGGGGTATGTAGGTaGAAATTCTCAGGAAGCCTGAAGCTGGTAGGGCTG | + |
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Preference number: 3 (lower is better) Translates to: PGQIQTSPGVCR*KFSGSLKLVGL Trigger: CAGCCCTACCAGCTTCAGGCTTCCTGAGAATTTCCACCTACATACCCCTGGACTTGTCTGGATTTGTCCCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| 3UTR CCA 72 bp | TGTGTAGGGTGGAGTGTATGCTTATGCACAAAGCCTTaGGTCCACACACACACACACACACACACACACACA | + |
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Preference number: 3 (lower is better) Translates to: CVGWSVCLCTKP*VHTHTHTHTHT Trigger: TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGACCCAAGGCTTTGTGCATAAGCATACACTCCACCCTACACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS-3UTR TCA 90 bp | CAGACAAGTCCAGGGGTATGTAGGTGGAAATTCTCAGGAAGCCTGAAGCTGGTAACGGATGATCCAGGCTaGCCAGGGCACTGCCCGCTG | + |
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Preference number: 4 (lower is better) Translates to: QTSPGVCRWKFSGSLKLVTDDPG*PGHCPL Trigger: CAGCGGGCAGTGCCCTGGTCAGCCTGGATCATCCGT...TACCAGCTTCAGGCTTCCTGAGAATTTCCACCTACATACCCCTGGACTTGTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS-3UTR TCA 90 bp | GAGAGGATCCGGGACAAATCCAGACAAGTCCAGGGGTATGTAGGTGGAAATTCTCCTCGCCAGCCCCGATaGTATCCGACTCCACTCGTG | + |
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Preference number: 4 (lower is better) Translates to: ERIRDKSRQVQGYVGGNSPRQPR*YPTPLV Trigger: CACGAGTGGAGTCGGATATCATCGGGGCTGGCGAGG...AGAATTTCCACCTACATACCCCTGGACTTGTCTGGATTTGTCCCGGATCCTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS-3UTR TCA 90 bp | TTCTGCCAGGAAGACCAAGTGATGTTACCACATCCATACGGGTGCTCTCAGTGGGAGCAGGCAGGGCACTaGGCACAAGCAGCAGGATTG | + |
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Preference number: 4 (lower is better) Translates to: FCQEDQVMLPHPYGCSQWEQAGH*AQAAGL Trigger: CAATCCTGCTGCTTGTGCTCAGTGCCCTGCCTGCTC...CCACTGAGAGCACCCGTATGGATGTGGTAACATCACTTGGTCTTCCTGGCAGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS-3UTR GCA 90 bp | TTCTGCCAGGAAGACCAAGTGATGTTACCACATCCATACGGGTGCTCTCAGTGGCAGCAGGAAGGAGGCTaGGAAGAGCAGAGCAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: FCQEDQVMLPHPYGCSQWQQEGG*EEQSRQ Trigger: CTGCCTGCTCTGCTCTTCGCAGCCTCCTTCCTGCTG...CCACTGAGAGCACCCGTATGGATGTGGTAACATCACTTGGTCTTCCTGGCAGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS-3UTR TCA 90 bp | CAGACAAGTCCAGGGGTATGTAGGTGGAAATTCTCAGGAAGCCTGAAGCTGGTAGTTGAGTCATGGAGGTaGGCAGGCCCACGAGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: QTSPGVCRWKFSGSLKLVVESWR*AGPRGS Trigger: TGAGCCTCGTGGGCCTGCTCACCTCCATGACTCAAC...TACCAGCTTCAGGCTTCCTGAGAATTTCCACCTACATACCCCTGGACTTGTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS-3UTR CCA 90 bp | TGTAGGGTGGAGTGTATGCTTATGCACAAAGCCTTGGGTCCACACACACACACACAGCTCCGAGGTATGTaGCATACCCACCAGCGCACC | + |
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Preference number: 4 (lower is better) Translates to: CRVECMLMHKALGPHTHTQLRGM*HTHQRT Trigger: GGTGCGCTGGTGGGTATGCCACATACCTCGGAGCTG...TGTGTGTGTGTGTGGACCCAAGGCTTTGTGCATAAGCATACACTCCACCCTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS-3UTR CCA 90 bp | AGAGTGTGTAGGGTGGAGTGTATGCTTATGCACAAAGCCTTGGGTCCACACACAAAGCAGCAGGATTGCTaGCAGCAGGTGGCTCCACAT | + |
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Preference number: 4 (lower is better) Translates to: RVCRVECMLMHKALGPHTKQQDC*QQVAPH Trigger: ATGTGGAGCCACCTGCTGCCAGCAATCCTGCTGCTT...TGTGTGTGGACCCAAGGCTTTGTGCATAAGCATACACTCCACCCTACACACTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS-3UTR CCA 90 bp | AGAGTGTGTAGGGTGGAGTGTATGCTTATGCACAAAGCCTTGGGTCCACACACAGTCCTGAGCGTAGCCTaGTTGAGTCATGGAGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: RVCRVECMLMHKALGPHTVLSVA*LSHGGE Trigger: CTCACCTCCATGACTCAACCAGGCTACGCTCAGGAC...TGTGTGTGGACCCAAGGCTTTGTGCATAAGCATACACTCCACCCTACACACTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| 3UTR CAA 72 bp | GTGTGTAGGGTGGAGTGTATGCTTATGCACAAAGCCTaGGGTCCACACACACACACACACACACACACACAC | + |
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Preference number: 4 (lower is better) Translates to: VCRVECMLMHKA*GPHTHTHTHTH Trigger: GTGTGTGTGTGTGTGTGTGTGTGTGTGTGGACCCAAGGCTTTGTGCATAAGCATACACTCCACCCTACACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS TCA 90 bp | TCCGAGGTATGTGGCATACCCACCAGCGCACCCAGTCCTGACGGATaGTCCAGGCTGACCAGGGCACTGCCCGCTGGGGCCCCTCGCCAG | + |
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Preference number: 5 (lower is better) Translates to: SEVCGIPTSAPSPDG*SRLTRALPAGAPRQ Trigger: CTGGCGAGGGGCCCCAGCGGGCAGTGCCCTGGTCAGCCTGGATCATCCGTCAGGACTGGGTGCGCTGGTGGGTATGCCACATACCTCGGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS TCA 90 bp | GTCCAGCTCCGAGGTATGTGGCATACCCACCAGCGCACCCAGTCCTaGCGGATGATCCAGGCTGACCAGGGCACTGCCCGCTGGGGCCCC | + |
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Preference number: 5 (lower is better) Translates to: VQLRGMWHTHQRTQS*RMIQADQGTARWGP Trigger: GGGGCCCCAGCGGGCAGTGCCCTGGTCAGCCTGGATCATCCGTCAGGACTGGGTGCGCTGGTGGGTATGCCACATACCTCGGAGCTGGAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS TCA 90 bp | CAGCCACCACGGGCCATAGCGAGCTCAGCAGGTAGGAGCCCGTGGTaGAGAGTGCGTGACATAGCATCAGTGCCAGCAGCAGGTAGAGTG | + |
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Preference number: 5 (lower is better) Translates to: QPPRAIASSAGRSPW*RVRDIASVPAAGRV Trigger: CACTCTACCTGCTGCTGGCACTGATGCTATGTCACGCACTCTTCACCACGGGCTCCTACCTGCTGAGCTCGCTATGGCCCGTGGTGGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS GCA 90 bp | GCCCACGAGGCTCAGCAGTGTGGAAAAGAGCAGCAGGAAGGAGGCTaGGAAGAGCAGAGCAGGCAGGGCACTGAGCACAAGCAGCAGGAT | + |
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Preference number: 5 (lower is better) Translates to: AHEAQQCGKEQQEGG*EEQSRQGTEHKQQD Trigger: ATCCTGCTGCTTGTGCTCAGTGCCCTGCCTGCTCTGCTCTTCGCAGCCTCCTTCCTGCTGCTCTTTTCCACACTGCTGAGCCTCGTGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS CCA 90 bp | AGCATCCGCTGTAGTGGTTGCCGCCAGCCTGATGTATTCCACCACTaGGTCCAGCTCCGAGGTATGTGGCATACCCACCAGCGCACCCAG | + |
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Preference number: 5 (lower is better) Translates to: SIRCSGCRQPDVFHH*VQLRGMWHTHQRTQ Trigger: CTGGGTGCGCTGGTGGGTATGCCACATACCTCGGAGCTGGACCCAGTGGTGGAATACATCAGGCTGGCGGCAACCACTACAGCGGATGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS-3UTR CAA 90 bp | AGAGTGTGTAGGGTGGAGTGTATGCTTATGCACAAAGCCTTGGGTCCACACACACTGAGCGTAGCCTGGTaGAGTCATGGAGGTGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: RVCRVECMLMHKALGPHTLSVAW*SHGGEQ Trigger: CTGCTCACCTCCATGACTCAACCAGGCTACGCTCAG...TGTGTGTGGACCCAAGGCTTTGTGCATAAGCATACACTCCACCCTACACACTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS TCA 72 bp | CCACCAGCGCACCCAGTCCTGACGGATGATCCAGGCTaGCCAGGGCACTGCCCGCTGGGGCCCCTCGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: PPAHPVLTDDPG*PGHCPLGPLAS Trigger: GCTGGCGAGGGGCCCCAGCGGGCAGTGCCCTGGTCAGCCTGGATCATCCGTCAGGACTGGGTGCGCTGGTGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS TCA 72 bp | TGTGGCATACCCACCAGCGCACCCAGTCCTGACGGATaGTCCAGGCTGACCAGGGCACTGCCCGCTGGGGCC | + |
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Preference number: 6 (lower is better) Translates to: CGIPTSAPSPDG*SRLTRALPAGA Trigger: GGCCCCAGCGGGCAGTGCCCTGGTCAGCCTGGATCATCCGTCAGGACTGGGTGCGCTGGTGGGTATGCCACA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS TCA 72 bp | CGAGGTATGTGGCATACCCACCAGCGCACCCAGTCCTaGCGGATGATCCAGGCTGACCAGGGCACTGCCCGC | + |
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Preference number: 6 (lower is better) Translates to: RGMWHTHQRTQS*RMIQADQGTAR Trigger: GCGGGCAGTGCCCTGGTCAGCCTGGATCATCCGTCAGGACTGGGTGCGCTGGTGGGTATGCCACATACCTCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS GCA 72 bp | GTCCCCTCCAGACCCCACAGCATCCGCTGTAGTGGTTaGCGCCAGCCTGATGTATTCCACCACTGGGTCCAG | + |
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Preference number: 6 (lower is better) Translates to: VPSRPHSIRCSG*RQPDVFHHWVQ Trigger: CTGGACCCAGTGGTGGAATACATCAGGCTGGCGGCAACCACTACAGCGGATGCTGTGGGGTCTGGAGGGGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS TCA 72 bp | CGGGCCATAGCGAGCTCAGCAGGTAGGAGCCCGTGGTaGAGAGTGCGTGACATAGCATCAGTGCCAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: RAIASSAGRSPW*RVRDIASVPAA Trigger: TGCTGCTGGCACTGATGCTATGTCACGCACTCTTCACCACGGGCTCCTACCTGCTGAGCTCGCTATGGCCCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS TCA 72 bp | CCAAGTCCTGAGCGTAGCCTGGTTGAGTCATGGAGGTaGGCAGGCCCACGAGGCTCAGCAGTGTGGAAAAGA | + |
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Preference number: 6 (lower is better) Translates to: PSPERSLVESWR*AGPRGSAVWKR Trigger: TCTTTTCCACACTGCTGAGCCTCGTGGGCCTGCTCACCTCCATGACTCAACCAGGCTACGCTCAGGACTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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| CDS CCA 72 bp | TGTAGTGGTTGCCGCCAGCCTGATGTATTCCACCACTaGGTCCAGCTCCGAGGTATGTGGCATACCCACCAG | + |
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Preference number: 6 (lower is better) Translates to: CSGCRQPDVFHH*VQLRGMWHTHQ Trigger: CTGGTGGGTATGCCACATACCTCGGAGCTGGACCCAGTGGTGGAATACATCAGGCTGGCGGCAACCACTACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055421.6 |
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