RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMEM235 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070330

Ensembl transcript IDs: ENSMUST00000093905.3

Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGAACACAAACTGGAGGGCAGGGTCTCCATCAGCTCCAGTCCTTTaGCCTCAGTGGGTCCCACTAACCCTGCTCCTCAGAAGCTCCCCA +
Preference number: 1 (lower is better)
Translates to: LNTNWRAGSPSAPVL*PQWVPLTLLLRSSP
Trigger: TGGGGAGCTTCTGAGGAGCAGGGTTAGTGGGACCCACTGAGGGCAAAGGACTGGAGCTGATGGAGACCCTGCCCTCCAGTTTGTGTTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR TCA 90 bp GGGAAAGGGAACAAAACTGAACCCATGGGTCCCGCCAAAGAGCAGTaGCACCCAGACCTGCCATCTGTTCTTGGGCCTTCTGGCCTCAGT +
Preference number: 1 (lower is better)
Translates to: GKGNKTEPMGPAKEQ*HPDLPSVLGPSGLS
Trigger: ACTGAGGCCAGAAGGCCCAAGAACAGATGGCAGGTCTGGGTGTCACTGCTCTTTGGCGGGACCCATGGGTTCAGTTTTGTTCCCTTTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR GCA 90 bp TGGCCTCAGTCTCCCACTCTGTGGCATTCGGTGAGTGGTTACTATTaGCTAGCTTGTGGGGGATGGAGAGGAAGCGGAACACTCAGCAGG +
Preference number: 1 (lower is better)
Translates to: WPQSPTLWHSVSGYY*LACGGWRGSGTLSR
Trigger: CCTGCTGAGTGTTCCGCTTCCTCTCCATCCCCCACAAGCTAGGCAATAGTAACCACTCACCGAATGCCACAGAGTGGGAGACTGAGGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CCA 90 bp CAAAGAGCAGTGACACCCAGACCTGCCATCTGTTCTTGGGCCTTCTaGCCTCAGTCTCCCACTCTGTGGCATTCGGTGAGTGGTTACTAT +
Preference number: 1 (lower is better)
Translates to: QRAVTPRPAICSWAF*PQSPTLWHSVSGYY
Trigger: ATAGTAACCACTCACCGAATGCCACAGAGTGGGAGACTGAGGCCAGAAGGCCCAAGAACAGATGGCAGGTCTGGGTGTCACTGCTCTTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CCA 90 bp CCTGGAAGTGCTCTTACATGGAATGGCAAAGGTCTGAACACAAACTaGAGGGCAGGGTCTCCATCAGCTCCAGTCCTTTGCCCTCAGTGG +
Preference number: 1 (lower is better)
Translates to: PGSALTWNGKGLNTN*RAGSPSAPVLCPQW
Trigger: CCACTGAGGGCAAAGGACTGGAGCTGATGGAGACCCTGCCCTCCAGTTTGTGTTCAGACCTTTGCCATTCCATGTAAGAGCACTTCCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CAA 90 bp TGGGTCCCGCCAAAGAGCAGTGACACCCAGACCTGCCATCTGTTCTaGGGCCTTCTGGCCTCAGTCTCCCACTCTGTGGCATTCGGTGAG +
Preference number: 2 (lower is better)
Translates to: WVPPKSSDTQTCHLF*GLLASVSHSVAFGE
Trigger: CTCACCGAATGCCACAGAGTGGGAGACTGAGGCCAGAAGGCCCAAGAACAGATGGCAGGTCTGGGTGTCACTGCTCTTTGGCGGGACCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CAA 90 bp TCTGAACACAAACTGGAGGGCAGGGTCTCCATCAGCTCCAGTCCTTaGCCCTCAGTGGGTCCCACTAACCCTGCTCCTCAGAAGCTCCCC +
Preference number: 2 (lower is better)
Translates to: SEHKLEGRVSISSSP*PSVGPTNPAPQKLP
Trigger: GGGGAGCTTCTGAGGAGCAGGGTTAGTGGGACCCACTGAGGGCAAAGGACTGGAGCTGATGGAGACCCTGCCCTCCAGTTTGTGTTCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CAA 90 bp GTCTCCCACTCTGTGGCATTCGGTGAGTGGTTACTATTGCCTAGCTaGTGGGGGATGGAGAGGAAGCGGAACACTCAGCAGGCACCTAGC +
Preference number: 2 (lower is better)
Translates to: VSHSVAFGEWLLLPS*WGMERKRNTQQAPS
Trigger: GCTAGGTGCCTGCTGAGTGTTCCGCTTCCTCTCCATCCCCCACAAGCTAGGCAATAGTAACCACTCACCGAATGCCACAGAGTGGGAGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR-3UTR CCA 90 bp AGGACTGAGACCCAAAGGTCCACTTTGCCTGGAAGATGTGCCTCTCACCAGCCCCTATTGCCTAGCTTGTaGGGGATGGAGAGGAAGCGG +
Preference number: 2 (lower is better)
Translates to: RTETQRSTLPGRCASHQPLLPSL*GMERKR
Trigger: CCGCTTCCTCTCCATCCCCCACAAGCTAGGCAATAG...GGGCTGGTGAGAGGCACATCTTCCAGGCAAAGTGGACCTTTGGGTCTCAGTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR-3UTR TCA 90 bp AGGACTGAGACCCAAAGGTCCACTTTGCCTGGAAGATGTGCCTCTCACCAGCCCGAAAGGGAACAAAACTaGACCCATGGGTCCCGCCAA +
Preference number: 2 (lower is better)
Translates to: RTETQRSTLPGRCASHQPEREQN*THGSRQ
Trigger: TTGGCGGGACCCATGGGTTCAGTTTTGTTCCCTTTC...GGGCTGGTGAGAGGCACATCTTCCAGGCAAAGTGGACCTTTGGGTCTCAGTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR-3UTR CCA 90 bp CTCCCTAGGTTGGAGTGGGCTACATCCCCCAGAGCAAGAACACCTTCTGGACACAATGTCAAAGGTGTCTaGGGCTTCCTTCTCCCCAGC +
Preference number: 2 (lower is better)
Translates to: LPRLEWATSPRARTPSGHNVKGV*GFLLPS
Trigger: GCTGGGGAGAAGGAAGCCCCAGACACCTTTGACATT...GTGTCCAGAAGGTGTTCTTGCTCTGGGGGATGTAGCCCACTCCAACCTAGGGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR-3UTR TCA 90 bp AAATACATAAACACAGGTCTGTCCCCTTGTATGTGGCCAGAGCTGATCCAGTTCGGACACACAGAACCCTaGGGCACCCCACCAGACTGT +
Preference number: 2 (lower is better)
Translates to: KYINTGLSPCMWPELIQFGHTEP*GTPPDC
Trigger: ACAGTCTGGTGGGGTGCCTCAGGGTTCTGTGTGTCC...GAACTGGATCAGCTCTGGCCACATACAAGGGGACAGACCTGTGTTTATGTATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR-3UTR CCA 90 bp ACAAAACTGAACCCATGGGTCCCGCCAAAGAGCAGTGACACCCAGACCTGCCATCTTCTCATGTTCAAATaGAGTAGAATGGAGCACTCC +
Preference number: 2 (lower is better)
Translates to: TKLNPWVPPKSSDTQTCHLLMFK*SRMEHS
Trigger: GGAGTGCTCCATTCTACTCCATTTGAACATGAGAAG...ATGGCAGGTCTGGGTGTCACTGCTCTTTGGCGGGACCCATGGGTTCAGTTTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR-3UTR CCA 90 bp AAATACATAAACACAGGTCTGTCCCCTTGTATGTGGCCAGAGCTGATCCAGTTCGTGGCATTCGGTGAGTaGTTACTATTGCCTAGCTTG +
Preference number: 2 (lower is better)
Translates to: KYINTGLSPCMWPELIQFVAFGE*LLLPSL
Trigger: CAAGCTAGGCAATAGTAACCACTCACCGAATGCCAC...GAACTGGATCAGCTCTGGCCACATACAAGGGGACAGACCTGTGTTTATGTATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR GCA 72 bp CCATGGGTCCCGCCAAAGAGCAGTGACACCCAGACCTaGCATCTGTTCTTGGGCCTTCTGGCCTCAGTCTCC +
Preference number: 3 (lower is better)
Translates to: PWVPPKSSDTQT*HLFLGLLASVS
Trigger: GGAGACTGAGGCCAGAAGGCCCAAGAACAGATGGCAGGTCTGGGTGTCACTGCTCTTTGGCGGGACCCATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR GCA 72 bp AACTGGAGGGCAGGGTCTCCATCAGCTCCAGTCCTTTaGCCTCAGTGGGTCCCACTAACCCTGCTCCTCAGA +
Preference number: 3 (lower is better)
Translates to: NWRAGSPSAPVL*PQWVPLTLLLR
Trigger: TCTGAGGAGCAGGGTTAGTGGGACCCACTGAGGGCAAAGGACTGGAGCTGATGGAGACCCTGCCCTCCAGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CCA 72 bp TCCTCTAGCCAGACAACCCAGGGGGCTGGCCAGGCATaGCTCCAATTCACTGTTAATGGGGCCAGCCTCAGA +
Preference number: 3 (lower is better)
Translates to: SSSQTTQGAGQA*LQFTVNGASLR
Trigger: TCTGAGGCTGGCCCCATTAACAGTGAATTGGAGCCATGCCTGGCCAGCCCCCTGGGTTGTCTGGCTAGAGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR-3UTR CAA 90 bp CCAGAGCTGATCCAGTTCTCATCTGTGCTGTCCCAGGCAGGGAGAGGGCTGCAGCCCACCAACTTCCCCTaGGGAAAGGGAACAAAACTG +
Preference number: 3 (lower is better)
Translates to: PELIQFSSVLSQAGRGLQPTNFP*GKGTKL
Trigger: CAGTTTTGTTCCCTTTCCCAAGGGGAAGTTGGTGGG...CTGCAGCCCTCTCCCTGCCTGGGACAGCACAGATGAGAACTGGATCAGCTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR-3UTR CAA 90 bp GCCTGTGAGCTGACCCATCCACATCTGCAGCCAAGTCTCCAGGCCAGGCTTCTGACCCAAAGGTCCACTTaGCCTGGAAGATGTGCCTCT +
Preference number: 3 (lower is better)
Translates to: ACELTHPHLQPSLQARLLTQRST*PGRCAS
Trigger: AGAGGCACATCTTCCAGGCAAAGTGGACCTTTGGGT...CAGAAGCCTGGCCTGGAGACTTGGCTGCAGATGTGGATGGGTCAGCTCACAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR GCA 72 bp ATCCACATCTGCAGCCAAGTCTCCAGGCCAGGCTTCTaGGTCCCTCTGAGGAGTTCCTCTAGCCAGACAACC +
Preference number: 3 (lower is better)
Translates to: IHICSQVSRPGF*VPLRSSSSQTT
Trigger: GGTTGTCTGGCTAGAGGAACTCCTCAGAGGGACGCAGAAGCCTGGCCTGGAGACTTGGCTGCAGATGTGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CCA 72 bp CCTAGCACAGGGGAGGACTGTCTCAGCTCCCTAGGTTaGAGTGGGCTACATCCCCCAGAGCAAGAACACCTT +
Preference number: 3 (lower is better)
Translates to: PSTGEDCLSSLG*SGLHPPEQEHL
Trigger: AAGGTGTTCTTGCTCTGGGGGATGTAGCCCACTCCAACCTAGGGAGCTGAGACAGTCCTCCCCTGTGCTAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CCA 72 bp CAAAGAGCAGTGACACCCAGACCTGCCATCTGTTCTTaGGCCTTCTGGCCTCAGTCTCCCACTCTGTGGCAT +
Preference number: 3 (lower is better)
Translates to: QRAVTPRPAICS*AFWPQSPTLWH
Trigger: ATGCCACAGAGTGGGAGACTGAGGCCAGAAGGCCCAAGAACAGATGGCAGGTCTGGGTGTCACTGCTCTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR TCA 72 bp CCCAGAGCAAGAACACCTTCTGGACACACAGAACCCTaGGGCACCCCACCAGACTGTCCCAAAAAGAGCTCA +
Preference number: 3 (lower is better)
Translates to: PRARTPSGHTEP*GTPPDCPKKSS
Trigger: TGAGCTCTTTTTGGGACAGTCTGGTGGGGTGCCTCAGGGTTCTGTGTGTCCAGAAGGTGTTCTTGCTCTGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR GCA 72 bp GTTAATGGGGCCAGCCTCAGACATTCCCCTGGTTGCTaGTATAAAGAGGAAGTTCCAGGCCAGCATGGGCAG +
Preference number: 3 (lower is better)
Translates to: VNGASLRHSPGC*YKEEVPGQHGQ
Trigger: CTGCCCATGCTGGCCTGGAACTTCCTCTTTATAGCAGCAACCAGGGGAATGTCTGAGGCTGGCCCCATTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CCA 72 bp TTCCCAGCCAGGATTCCGACAAATGTCAAAGGTGTCTaGGGCTTCCTTCTCCCCAGCACCCTGTTACACTGG +
Preference number: 3 (lower is better)
Translates to: FPARIPTNVKGV*GFLLPSTLLHW
Trigger: CCAGTGTAACAGGGTGCTGGGGAGAAGGAAGCCCCAGACACCTTTGACATTTGTCGGAATCCTGGCTGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CCA 72 bp TCGGTGAGTGGTTACTATTGCCTAGCTTGTGGGGGATaGAGAGGAAGCGGAACACTCAGCAGGCACCTAGCA +
Preference number: 3 (lower is better)
Translates to: SVSGYYCLACGG*RGSGTLSRHLA
Trigger: TGCTAGGTGCCTGCTGAGTGTTCCGCTTCCTCTCCATCCCCCACAAGCTAGGCAATAGTAACCACTCACCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CCA 72 bp GTGGCATTCGGTGAGTGGTTACTATTGCCTAGCTTGTaGGGGATGGAGAGGAAGCGGAACACTCAGCAGGCA +
Preference number: 3 (lower is better)
Translates to: VAFGEWLLLPSL*GMERKRNTQQA
Trigger: TGCCTGCTGAGTGTTCCGCTTCCTCTCCATCCCCCACAAGCTAGGCAATAGTAACCACTCACCGAATGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CCA 72 bp AACTTCCCCTTGGGAAAGGGAACAAAACTGAACCCATaGGTCCCGCCAAAGAGCAGTGACACCCAGACCTGC +
Preference number: 3 (lower is better)
Translates to: NFPLGKGTKLNP*VPPKSSDTQTC
Trigger: GCAGGTCTGGGTGTCACTGCTCTTTGGCGGGACCCATGGGTTCAGTTTTGTTCCCTTTCCCAAGGGGAAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR TCA 72 bp AACAAAACTGAACCCATGGGTCCCGCCAAAGAGCAGTaGCACCCAGACCTGCCATCTGTTCTTGGGCCTTCT +
Preference number: 3 (lower is better)
Translates to: NKTEPMGPAKEQ*HPDLPSVLGPS
Trigger: AGAAGGCCCAAGAACAGATGGCAGGTCTGGGTGTCACTGCTCTTTGGCGGGACCCATGGGTTCAGTTTTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR GCA 72 bp TCTCCCACTCTGTGGCATTCGGTGAGTGGTTACTATTaGCTAGCTTGTGGGGGATGGAGAGGAAGCGGAACA +
Preference number: 3 (lower is better)
Translates to: SPTLWHSVSGYY*LACGGWRGSGT
Trigger: TGTTCCGCTTCCTCTCCATCCCCCACAAGCTAGGCAATAGTAACCACTCACCGAATGCCACAGAGTGGGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR GCA 72 bp ACTGTTAATGGGGCCAGCCTCAGACATTCCCCTGGTTaGTGCTATAAAGAGGAAGTTCCAGGCCAGCATGGG +
Preference number: 3 (lower is better)
Translates to: TVNGASLRHSPG*CYKEEVPGQHG
Trigger: CCCATGCTGGCCTGGAACTTCCTCTTTATAGCAGCAACCAGGGGAATGTCTGAGGCTGGCCCCATTAACAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CCA 72 bp TCCAAATACATAAACACAGGTCTGTCCCCTTGTATGTaGCCAGAGCTGATCCAGTTCTCATCTGTGCTGTCC +
Preference number: 3 (lower is better)
Translates to: SKYINTGLSPCM*PELIQFSSVLS
Trigger: GGACAGCACAGATGAGAACTGGATCAGCTCTGGCCACATACAAGGGGACAGACCTGTGTTTATGTATTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CCA 72 bp ATTTATTCAGACACCTGGAAGTGCTCTTACATGGAATaGCAAAGGTCTGAACACAAACTGGAGGGCAGGGTC +
Preference number: 3 (lower is better)
Translates to: IYSDTWKCSYME*QRSEHKLEGRV
Trigger: GACCCTGCCCTCCAGTTTGTGTTCAGACCTTTGCCATTCCATGTAAGAGCACTTCCAGGTGTCTGAATAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS-3UTR TCA 90 bp GCAGTGACACCCAGACCTGCCATCTGTTCTTGGGCCTTCTGGCCTCAGTCTCCCGGCGCTGGCTCAGGCTaGGGAGCCGGGCAGCTGCGA +
Preference number: 4 (lower is better)
Translates to: AVTPRPAICSWAFWPQSPGAGSG*GAGQLR
Trigger: TCGCAGCTGCCCGGCTCCTCAGCCTGAGCCAGCGCC...GGGAGACTGAGGCCAGAAGGCCCAAGAACAGATGGCAGGTCTGGGTGTCACTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS-3UTR GCA 90 bp GCAGTGACACCCAGACCTGCCATCTGTTCTTGGGCCTTCTGGCCTCAGTCTCCCGAGGAGCCGGGCAGCTaGGAGCAGGAGGGCCCCGCT +
Preference number: 4 (lower is better)
Translates to: AVTPRPAICSWAFWPQSPEEPGS*EQEGPA
Trigger: AGCGGGGCCCTCCTGCTCGCAGCTGCCCGGCTCCTC...GGGAGACTGAGGCCAGAAGGCCCAAGAACAGATGGCAGGTCTGGGTGTCACTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS-3UTR TCA 90 bp CCAGGATTCCGACAAATGTCAAAGGTGTCTGGGGCTTCCTTCTCCCCAGCACCCGCAGGAGGGCCCCGCTaGGCACCTCCGAGGCGCAGG +
Preference number: 4 (lower is better)
Translates to: PGFRQMSKVSGASFSPAPAGGPR*APPRRR
Trigger: CCTGCGCCTCGGAGGTGCTCAGCGGGGCCCTCCTGC...GGGTGCTGGGGAGAAGGAAGCCCCAGACACCTTTGACATTTGTCGGAATCCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS-3UTR CCA 90 bp GGATGGAGAGGAAGCGGAACACTCAGCAGGCACCTAGCACAGGGGAGGACTGTCGGCACTCCTGGGCGCTaGCTCAGGCTGAGGAGCCGG +
Preference number: 4 (lower is better)
Translates to: GWRGSGTLSRHLAQGRTVGTPGR*LRLRSR
Trigger: CCGGCTCCTCAGCCTGAGCCAGCGCCCAGGAGTGCC...GACAGTCCTCCCCTGTGCTAGGTGCCTGCTGAGTGTTCCGCTTCCTCTCCATCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS-3UTR TCA 90 bp CCAGGATTCCGACAAATGTCAAAGGTGTCTGGGGCTTCCTTCTCCCCAGCACCCCCAGCAGCGCGAAGCTaGGTAAGGCGCCCAGGGCTG +
Preference number: 4 (lower is better)
Translates to: PGFRQMSKVSGASFSPAPPAARS*VRRPGL
Trigger: CAGCCCTGGGCGCCTTACTCAGCTTCGCGCTGCTGG...GGGTGCTGGGGAGAAGGAAGCCCCAGACACCTTTGACATTTGTCGGAATCCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS-3UTR GCA 90 bp CCCAGACCTGCCATCTGTTCTTGGGCCTTCTGGCCTCAGTCTCCCACTCTGTGGCGCCAGAGCCCGGAATaGGAGAAGAGCTGCACGCCA +
Preference number: 4 (lower is better)
Translates to: PRPAICSWAFWPQSPTLWRQSPE*EKSCTP
Trigger: TGGCGTGCAGCTCTTCTCGCATTCCGGGCTCTGGCG...CCACAGAGTGGGAGACTGAGGCCAGAAGGCCCAAGAACAGATGGCAGGTCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS-3UTR GCA 90 bp ACCTTCTGGACACACAGAACCCTGAGGCACCCCACCAGACTGTCCCAAAAAGAGGCTGGCGACAGCCGCTaGCAGCAGCGCGAAGCTGAG +
Preference number: 4 (lower is better)
Translates to: TFWTHRTLRHPTRLSQKEAGDSR*QQREAE
Trigger: CTCAGCTTCGCGCTGCTGGCAGCGGCTGTCGCCAGC...CTCTTTTTGGGACAGTCTGGTGGGGTGCCTCAGGGTTCTGTGTGTCCAGAAGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS-3UTR GCA 90 bp CCTTGTATGTGGCCAGAGCTGATCCAGTTCTCATCTGTGCTGTCCCAGGCAGGGGTAGATGCTGAGCCCTaGCAGGGTCAGGGCACCCCC +
Preference number: 4 (lower is better)
Translates to: PCMWPELIQFSSVLSQAGVDAEP*QGQGTP
Trigger: GGGGGTGCCCTGACCCTGGCAGGGCTCAGCATCTAC...CCCTGCCTGGGACAGCACAGATGAGAACTGGATCAGCTCTGGCCACATACAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS-3UTR CCA 90 bp CCCAGACCTGCCATCTGTTCTTGGGCCTTCTGGCCTCAGTCTCCCACTCTGTGGAGAAGTAGCAGCCAGTaGCCAGCAGCAGAGGGACAC +
Preference number: 4 (lower is better)
Translates to: PRPAICSWAFWPQSPTLWRSSSQ*PAAEGH
Trigger: GTGTCCCTCTGCTGCTGGCCACTGGCTGCTACTTCT...CCACAGAGTGGGAGACTGAGGCCAGAAGGCCCAAGAACAGATGGCAGGTCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS-3UTR CCA 90 bp CAGAGCAAGAACACCTTCTGGACACACAGAACCCTGAGGCACCCCACCAGACTGTGTACCAGTAGTCGCTaGCGACAGCCGCTGCCAGCA +
Preference number: 4 (lower is better)
Translates to: QSKNTFWTHRTLRHPTRLCTSSR*RQPLPA
Trigger: TGCTGGCAGCGGCTGTCGCCAGCGACTACTGGTACA...CAGTCTGGTGGGGTGCCTCAGGGTTCTGTGTGTCCAGAAGGTGTTCTTGCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS-3UTR CCA 90 bp GCAGTGACACCCAGACCTGCCATCTGTTCTTGGGCCTTCTGGCCTCAGTCTCCCAGCAGAGGGACACTCTaGGATAGGGAGCTGAGCAAG +
Preference number: 4 (lower is better)
Translates to: AVTPRPAICSWAFWPQSPSRGTL*DRELSK
Trigger: CTTGCTCAGCTCCCTATCCCAGAGTGTCCCTCTGCT...GGGAGACTGAGGCCAGAAGGCCCAAGAACAGATGGCAGGTCTGGGTGTCACTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS-3UTR GCA 90 bp CTTCTGGACACACAGAACCCTGAGGCACCCCACCAGACTGTCCCAAAAAGAGCTACCATGACTGTGCGATaGAGGGAGAGCAGGTGCTGT +
Preference number: 4 (lower is better)
Translates to: LLDTQNPEAPHQTVPKRATMTVR*RESRCC
Trigger: ACAGCACCTGCTCTCCCTGCATCGCACAGTCATGGT...AGCTCTTTTTGGGACAGTCTGGTGGGGTGCCTCAGGGTTCTGTGTGTCCAGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CAA 72 bp GTCTCCCACTCTGTGGCATTCGGTGAGTGGTTACTATaGCCTAGCTTGTGGGGGATGGAGAGGAAGCGGAAC +
Preference number: 4 (lower is better)
Translates to: VSHSVAFGEWLL*PSLWGMERKRN
Trigger: GTTCCGCTTCCTCTCCATCCCCCACAAGCTAGGCAATAGTAACCACTCACCGAATGCCACAGAGTGGGAGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CAA 72 bp TCTGTGGCATTCGGTGAGTGGTTACTATTGCCTAGCTaGTGGGGGATGGAGAGGAAGCGGAACACTCAGCAG +
Preference number: 4 (lower is better)
Translates to: SVAFGEWLLLPS*WGMERKRNTQQ
Trigger: CTGCTGAGTGTTCCGCTTCCTCTCCATCCCCCACAAGCTAGGCAATAGTAACCACTCACCGAATGCCACAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS-3UTR TCA 90 bp ACAAAACTGAACCCATGGGTCCCGCCAAAGAGCAGTGACACCCAGACCTGCCATCACGAATGCCAGGTGTaGGTAGCTGATGTAGATGCT +
Preference number: 4 (lower is better)
Translates to: TKLNPWVPPKSSDTQTCHHECQV*VADVDA
Trigger: AGCATCTACATCAGCTACTCACACCTGGCATTCGTG...ATGGCAGGTCTGGGTGTCACTGCTCTTTGGCGGGACCCATGGGTTCAGTTTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CAA 72 bp GAAGCTCCCCAGATCCTTAGAAGCAATCTAAGTAGCTaGGGGACACTGCTGGGACCAAACCTTGAGAGATAC +
Preference number: 4 (lower is better)
Translates to: EAPQILRSNLSS*GTLLGPNLERY
Trigger: GTATCTCTCAAGGTTTGGTCCCAGCAGTGTCCCCAAGCTACTTAGATTGCTTCTAAGGATCTGGGGAGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
3UTR CAA 72 bp CCTATTGTCCAAATACATAAACACAGGTCTGTCCCCTaGTATGTGGCCAGAGCTGATCCAGTTCTCATCTGT +
Preference number: 4 (lower is better)
Translates to: PIVQIHKHRSVP*YVARADPVLIC
Trigger: ACAGATGAGAACTGGATCAGCTCTGGCCACATACAAGGGGACAGACCTGTGTTTATGTATTTGGACAATAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS GCA 90 bp GGCACGCAGCTGTTCTGCCCTTCACAGGTGCGCCAGAGCCCGGAATaGGAGAAGAGCTGCACGCCACCGAGGCCGCCAGCGTCCGCCACC +
Preference number: 5 (lower is better)
Translates to: GTQLFCPSQVRQSPE*EKSCTPPRPPASAT
Trigger: GGTGGCGGACGCTGGCGGCCTCGGTGGCGTGCAGCTCTTCTCGCATTCCGGGCTCTGGCGCACCTGTGAAGGGCAGAACAGCTGCGTGCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS GCA 90 bp TTCTGCCCTTCACAGGTGCGCCAGAGCCCGGAATGCGAGAAGAGCTaGACGCCACCGAGGCCGCCAGCGTCCGCCACCTCCAGGATGTAC +
Preference number: 5 (lower is better)
Translates to: FCPSQVRQSPECEKS*TPPRPPASATSRMY
Trigger: GTACATCCTGGAGGTGGCGGACGCTGGCGGCCTCGGTGGCGTGCAGCTCTTCTCGCATTCCGGGCTCTGGCGCACCTGTGAAGGGCAGAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS TCA 90 bp GTGCGTCACGCCGTACGTGCGGGCCGCCTCCACGAATGCCAGGTGTaGGTAGCTGATGTAGATGCTGAGCCCTGCCAGGGTCAGGGCACC +
Preference number: 5 (lower is better)
Translates to: VRHAVRAGRLHECQV*VADVDAEPCQGQGT
Trigger: GGTGCCCTGACCCTGGCAGGGCTCAGCATCTACATCAGCTACTCACACCTGGCATTCGTGGAGGCGGCCCGCACGTACGGCGTGACGCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS GCA 90 bp AGGCCGGCACTGGCAAATGGGTCAATCAGGGGCACGCAGCTGTTCTaGCCTTCACAGGTGCGCCAGAGCCCGGAATGCGAGAAGAGCTGC +
Preference number: 5 (lower is better)
Translates to: RPALANGSIRGTQLF*PSQVRQSPECEKSC
Trigger: GCAGCTCTTCTCGCATTCCGGGCTCTGGCGCACCTGTGAAGGGCAGAACAGCTGCGTGCCCCTGATTGACCCATTTGCCAGTGCCGGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS GCA 72 bp TCACAGGTGCGCCAGAGCCCGGAATGCGAGAAGAGCTaGACGCCACCGAGGCCGCCAGCGTCCGCCACCTCC +
Preference number: 6 (lower is better)
Translates to: SQVRQSPECEKS*TPPRPPASATS
Trigger: GGAGGTGGCGGACGCTGGCGGCCTCGGTGGCGTGCAGCTCTTCTCGCATTCCGGGCTCTGGCGCACCTGTGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS TCA 72 bp GCCGTACGTGCGGGCCGCCTCCACGAATGCCAGGTGTaGGTAGCTGATGTAGATGCTGAGCCCTGCCAGGGT +
Preference number: 6 (lower is better)
Translates to: AVRAGRLHECQV*VADVDAEPCQG
Trigger: ACCCTGGCAGGGCTCAGCATCTACATCAGCTACTCACACCTGGCATTCGTGGAGGCGGCCCGCACGTACGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS GCA 72 bp CAATCAGGGGCACGCAGCTGTTCTGCCCTTCACAGGTaGGCCAGAGCCCGGAATGCGAGAAGAGCTGCACGC +
Preference number: 6 (lower is better)
Translates to: QSGARSCSALHR*ARARNARRAAR
Trigger: GCGTGCAGCTCTTCTCGCATTCCGGGCTCTGGCGCACCTGTGAAGGGCAGAACAGCTGCGTGCCCCTGATTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS GCA 72 bp AGTGACCAGCCGAAGCTGATGTGCACGTTCTGCACGTaGGTCACGCCGTACGTGCGGGCCGCCTCCACGAAT +
Preference number: 6 (lower is better)
Translates to: SDQPKLMCTFCT*VTPYVRAASTN
Trigger: ATTCGTGGAGGCGGCCCGCACGTACGGCGTGACGCACGTGCAGAACGTGCACATCAGCTTCGGCTGGTCACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS CCA 72 bp GGGTCAGGGCACCCCCTAGCAAGAAGTAGCAGCCAGTaGCCAGCAGCAGAGGGACACTCTGGGATAGGGAGC +
Preference number: 6 (lower is better)
Translates to: GSGHPLARSSSQ*PAAEGHSGIGS
Trigger: GCTCCCTATCCCAGAGTGTCCCTCTGCTGCTGGCCACTGGCTGCTACTTCTTGCTAGGGGGTGCCCTGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS GCA 72 bp CTGGCAAATGGGTCAATCAGGGGCACGCAGCTGTTCTaGCCTTCACAGGTGCGCCAGAGCCCGGAATGCGAG +
Preference number: 6 (lower is better)
Translates to: LANGSIRGTQLF*PSQVRQSPECE
Trigger: CTCGCATTCCGGGCTCTGGCGCACCTGTGAAGGGCAGAACAGCTGCGTGCCCCTGATTGACCCATTTGCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3
CDS GCA 72 bp ACGAGGCTCAGAGGCAAGACTACCATGACTGTGCGATaGAGGGAGAGCAGGTGCTGTACGGAGGGAGAAACT +
Preference number: 6 (lower is better)
Translates to: TRLRGKTTMTVR*RESRCCTEGET
Trigger: AGTTTCTCCCTCCGTACAGCACCTGCTCTCCCTGCATCGCACAGTCATGGTAGTCTTGCCTCTGAGCCTCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093905.3