Pregenerated sensors for TMEM233 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079278Ensembl transcript IDs: ENSMUST00000111997.3, ENSMUST00000239438.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTCCTGTCCCTAAGTCAGTCTCCTTCTGGGACAAGGGTTTTCTCATaGCATACCTGGGTGGAGTCCTGTGCCCACCAACCTCCCTCCCCC | + |
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Preference number: 1 (lower is better) Translates to: FLSLSQSPSGTRVFS*HTWVESCAHQPPSP Trigger: GGGGGAGGGAGGTTGGTGGGCACAGGACTCCACCCAGGTATGTCATGAGAAAACCCTTGTCCCAGAAGGAGACTGACTTAGGGACAGGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR CCA 90 bp | TGGAGACCAAGACTGGACCTGAAGGCCACTGTCTCTTTGCTACGGTaGGCAATGACTGGTGTTGTGGGAAGGTGTGAAGGACCCACTGGT | + |
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Preference number: 1 (lower is better) Translates to: WRPRLDLKATVSLLR*AMTGVVGRCEGPTG Trigger: ACCAGTGGGTCCTTCACACCTTCCCACAACACCAGTCATTGCCCACCGTAGCAAAGAGACAGTGGCCTTCAGGTCCAGTCTTGGTCTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR TCA 90 bp | AATCAGGATCCAATATGCTGGAATGGTGGTGGCATCCCTGTATGCTaGGAATTCCTGTCCCTAAGTCAGTCTCCTTCTGGGACAAGGGTT | + |
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Preference number: 1 (lower is better) Translates to: NQDPICWNGGGIPVC*EFLSLSQSPSGTRV Trigger: AACCCTTGTCCCAGAAGGAGACTGACTTAGGGACAGGAATTCTCAGCATACAGGGATGCCACCACCATTCCAGCATATTGGATCCTGATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR TCA 90 bp | CCCACTGGTACCCAAGAGAGACATTCTCCTTGCAGCAGCAAAGACTaGGAAAGGATAAAGCAGGAAGCCTTCTTCGAAATTCAGCGCTAT | + |
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Preference number: 1 (lower is better) Translates to: PTGTQERHSPCSSKD*ERIKQEAFFEIQRY Trigger: ATAGCGCTGAATTTCGAAGAAGGCTTCCTGCTTTATCCTTTCTCAGTCTTTGCTGCTGCAAGGAGAATGTCTCTCTTGGGTACCAGTGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR TCA 90 bp | GGGGAGACCCTACCACACGGAGAAAGGGAAGAAGAAATAAGTCTATaGCCTCAACTGTTCTCGAGAACTTTAAGCATGCTATGGTATTTG | + |
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Preference number: 1 (lower is better) Translates to: GETLPHGEREEEISL*PQLFSRTLSMLWYL Trigger: CAAATACCATAGCATGCTTAAAGTTCTCGAGAACAGTTGAGGTCATAGACTTATTTCTTCTTCCCTTTCTCCGTGTGGTAGGGTCTCCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR TCA 90 bp | TATGACTCTTTAGGGTGGCTTCCTGGAAAAATCAAAGCTCTTGCCTaGGATTTGCTGAAAGAAATAGATAGAAAAGAAAGCCACATTACG | + |
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Preference number: 1 (lower is better) Translates to: YDSLGWLPGKIKALA*DLLKEIDRKESHIT Trigger: CGTAATGTGGCTTTCTTTTCTATCTATTTCTTTCAGCAAATCTCAGGCAAGAGCTTTGATTTTTCCAGGAAGCCACCCTAAAGAGTCATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR-3UTR GCA 90 bp | CCAGCATTCACAGCTCTCCCTGAAAGCCACCTGCGCCCCTCGCCGCCCCCAAATGAGGACCGTCCGCCATaGTTCCCAGCTGAGAGCTGT | + |
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Preference number: 2 (lower is better) Translates to: PAFTALPESHLRPSPPPNEDRPP*FPAESC Trigger: ACAGCTCTCAGCTGGGAAGCATGGCGGACGGTCCTC...ATTTGGGGGCGGCGAGGGGCGCAGGTGGCTTTCAGGGAGAGCTGTGAATGCTGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR-3UTR GCA 90 bp | CCAGCATTCACAGCTCTCCCTGAAAGCCACCTGCGCCCCTCGCCGCCCCCAAATTTTGGTGGGTGTGTCTaGACTGCAGCTGAGCTCCGT | + |
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Preference number: 2 (lower is better) Translates to: PAFTALPESHLRPSPPPNFGGCV*TAAELR Trigger: ACGGAGCTCAGCTGCAGTGCAGACACACCCACCAAA...ATTTGGGGGCGGCGAGGGGCGCAGGTGGCTTTCAGGGAGAGCTGTGAATGCTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR-3UTR TCA 90 bp | GTCCCTAAGTCAGTCTCCTTCTGGGACAAGGGTTTTCTCATGACATACCTGGGTCCTCCCCAAAGGCATTaGGACAGGTGTTTTGACTCT | + |
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Preference number: 2 (lower is better) Translates to: VPKSVSFWDKGFLMTYLGPPQRH*DRCFDS Trigger: AGAGTCAAAACACCTGTCTCAATGCCTTTGGGGAGG...ACCCAGGTATGTCATGAGAAAACCCTTGTCCCAGAAGGAGACTGACTTAGGGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR-3UTR CCA 90 bp | AAATGCAGGGTCTGGGAGAGGCAGCAGAAGCCTGTGACCTCAGCACTGGAAAGGCCACATTACGTAAAATaGCCATTTTTACTCCACACG | + |
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Preference number: 2 (lower is better) Translates to: KCRVWERQQKPVTSALERPHYVK*PFLLHT Trigger: CGTGTGGAGTAAAAATGGCCATTTTACGTAATGTGG...CCTTTCCAGTGCTGAGGTCACAGGCTTCTGCTGCCTCTCCCAGACCCTGCATTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR-3UTR TCA 90 bp | GACCCAGTGTTTTCCCAAACACCTTCAATCCACTATCAATGTGCTTCATATTTGGGCAGCAGAAGCCTGTaGCCTCAGCACTGGAAAGGC | + |
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Preference number: 2 (lower is better) Translates to: DPVFSQTPSIHYQCASYLGSRSL*PQHWKG Trigger: GCCTTTCCAGTGCTGAGGTCACAGGCTTCTGCTGCC...CAAATATGAAGCACATTGATAGTGGATTGAAGGTGTTTGGGAAAACACTGGGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR-3UTR CCA 90 bp | GACCCAGTGTTTTCCCAAACACCTTCAATCCACTATCAATGTGCTTCATATTTGTGCCAGTGGCTTTGGTaGGTGTGTCTGCACTGCAGC | + |
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Preference number: 2 (lower is better) Translates to: DPVFSQTPSIHYQCASYLCQWLW*VCLHCS Trigger: GCTGCAGTGCAGACACACCCACCAAAGCCACTGGCA...CAAATATGAAGCACATTGATAGTGGATTGAAGGTGTTTGGGAAAACACTGGGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR CAA 90 bp | GATCTTACAGTTTTAAAATCAAGGATCCATTCCTCAGAAACTTCTTaGGGAGTGTGTGCAGATGAGGACCGTCCGCCATGCTTCCCAGCT | + |
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Preference number: 2 (lower is better) Translates to: DLTVLKSRIHSSETS*GVCADEDRPPCFPA Trigger: AGCTGGGAAGCATGGCGGACGGTCCTCATCTGCACACACTCCCAAAGAAGTTTCTGAGGAATGGATCCTTGATTTTAAAACTGTAAGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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| 3UTR-3UTR TCA 90 bp | GTCCCTAAGTCAGTCTCCTTCTGGGACAAGGGTTTTCTCATGACATACCTGGGTTTGAGACAGGTGTTTTaGCTCTTGATCACTTGCTCA | + |
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Preference number: 2 (lower is better) Translates to: VPKSVSFWDKGFLMTYLGLRQVF*LLITCS Trigger: TGAGCAAGTGATCAAGAGTCAAAACACCTGTCTCAA...ACCCAGGTATGTCATGAGAAAACCCTTGTCCCAGAAGGAGACTGACTTAGGGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR-3UTR TCA 90 bp | TTTGGGGAAAGACCAGGGACTGAAACACACAAACAGGATATAAGAATCAGGATCAAGCAGCGAGGTTTCTaGAGTTCATTCCTGAAGAGG | + |
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Preference number: 2 (lower is better) Translates to: FGERPGTETHKQDIRIRIKQRGF*SSFLKR Trigger: CCTCTTCAGGAATGAACTTCAGAAACCTCGCTGCTT...GATCCTGATTCTTATATCCTGTTTGTGTGTTTCAGTCCCTGGTCTTTCCCCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR-3UTR TCA 90 bp | TTTGGGGAAAGACCAGGGACTGAAACACACAAACAGGATATAAGAATCAGGATCATCAAAGCTCTTGCCTaGGATTTGCTGAAAGAAATA | + |
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Preference number: 2 (lower is better) Translates to: FGERPGTETHKQDIRIRIIKALA*DLLKEI Trigger: TATTTCTTTCAGCAAATCTCAGGCAAGAGCTTTGAT...GATCCTGATTCTTATATCCTGTTTGTGTGTTTCAGTCCCTGGTCTTTCCCCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR GCA 72 bp | AAACACCAGCATTCACAGCTCTCCCTGAAAGCCACCTaGGCCCCTCGCCGCCCCCAAATCCAGACGTCCCGA | + |
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Preference number: 3 (lower is better) Translates to: KHQHSQLSLKAT*APRRPQIQTSR Trigger: TCGGGACGTCTGGATTTGGGGGCGGCGAGGGGCGCAGGTGGCTTTCAGGGAGAGCTGTGAATGCTGGTGTTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR CCA 72 bp | AGCACTGGAAAGGCAGAGGCAGAAGAAGGCCATCCCTaGTTACATAGCAATTCAAGGCCAGCCTGGGTTGCC | + |
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Preference number: 3 (lower is better) Translates to: STGKAEAEEGHP*LHSNSRPAWVA Trigger: GGCAACCCAGGCTGGCCTTGAATTGCTATGTAACCAGGGATGGCCTTCTTCTGCCTCTGCCTTTCCAGTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR CCA 72 bp | AGACTGGACCTGAAGGCCACTGTCTCTTTGCTACGGTaGGCAATGACTGGTGTTGTGGGAAGGTGTGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: RLDLKATVSLLR*AMTGVVGRCEG Trigger: TCCTTCACACCTTCCCACAACACCAGTCATTGCCCACCGTAGCAAAGAGACAGTGGCCTTCAGGTCCAGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR-3UTR CAA 90 bp | AAATGCAGGGTCTGGGAGAGGCAGCAGAAGCCTGTGACCTCAGCACTGGAAAGGCCTGAACTTAAACTGTaGACTTTATACAAGGGGCGG | + |
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Preference number: 3 (lower is better) Translates to: KCRVWERQQKPVTSALERPELKL*TLYKGR Trigger: CCGCCCCTTGTATAAAGTCAACAGTTTAAGTTCAGG...CCTTTCCAGTGCTGAGGTCACAGGCTTCTGCTGCCTCTCCCAGACCCTGCATTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR TCA 72 bp | AGATGCCTAGGATCTGGTTCCTTCTCCGGCTCCAAATaGTCAATGCAGATACAAGCAAGAGAAGGCGGTGGG | + |
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Preference number: 3 (lower is better) Translates to: RCLGSGSFSGSK*SMQIQAREGGG Trigger: CCCACCGCCTTCTCTTGCTTGTATCTGCATTGATCATTTGGAGCCGGAGAAGGAACCAGATCCTAGGCATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR TCA 72 bp | CCAATATGCTGGAATGGTGGTGGCATCCCTGTATGCTaGGAATTCCTGTCCCTAAGTCAGTCTCCTTCTGGG | + |
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Preference number: 3 (lower is better) Translates to: PICWNGGGIPVC*EFLSLSQSPSG Trigger: CCCAGAAGGAGACTGACTTAGGGACAGGAATTCTCAGCATACAGGGATGCCACCACCATTCCAGCATATTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR TCA 72 bp | CCCAAATCCAGACGTCCCGAGAAGCAGCGAGGTTTCTaGAGTTCATTCCTGAAGAGGAGGAATGGATGCAAA | + |
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Preference number: 3 (lower is better) Translates to: PKSRRPEKQRGF*SSFLKRRNGCK Trigger: TTTGCATCCATTCCTCCTCTTCAGGAATGAACTTCAGAAACCTCGCTGCTTCTCGGGACGTCTGGATTTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR CCA 72 bp | ATGCTGAGAATTCCTGTCCCTAAGTCAGTCTCCTTCTaGGACAAGGGTTTTCTCATGACATACCTGGGTGGA | + |
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Preference number: 3 (lower is better) Translates to: MLRIPVPKSVSF*DKGFLMTYLGG Trigger: TCCACCCAGGTATGTCATGAGAAAACCCTTGTCCCAGAAGGAGACTGACTTAGGGACAGGAATTCTCAGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR TCA 72 bp | ACCCAAGAGAGACATTCTCCTTGCAGCAGCAAAGACTaGGAAAGGATAAAGCAGGAAGCCTTCTTCGAAATT | + |
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Preference number: 3 (lower is better) Translates to: TQERHSPCSSKD*ERIKQEAFFEI Trigger: AATTTCGAAGAAGGCTTCCTGCTTTATCCTTTCTCAGTCTTTGCTGCTGCAAGGAGAATGTCTCTCTTGGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| CDS-3UTR GCA 90 bp | CCGACTAGTGGGTGTTCATTTGCCAGGGACCCGCCTCTGGAGAGTCCTGGAGGAGGAGCGCACGGTTCGTaGAGCCTGGGGCTCTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: PTSGCSFARDPPLESPGGGAHGS*SLGLWL Trigger: CAGCCAGAGCCCCAGGCTGCACGAACCGTGCGCTCC...TCCTCCAGGACTCTCCAGAGGCGGGTCCCTGGCAAATGAACACCCACTAGTCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239438.2 |
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| CDS-3UTR CCA 90 bp | TCTGGGGACGCTGAGGGAGGTGGGGAGACCCTACCACACGGAGAAAGGGAAGAACAATGGCCACCCACTTaGCGTTCCGCCCCAGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: SGDAEGGGETLPHGEREEQWPPT*RSAPAS Trigger: GGAGGCTGGGGCGGAACGCCAAGTGGGTGGCCATTG...TTCTTCCCTTTCTCCGTGTGGTAGGGTCTCCCCACCTCCCTCAGCGTCCCCAGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| CDS-3UTR GCA 90 bp | CATTCCCGACTAGTGGGTGTTCATTTGCCAGGGACCCGCCTCTGGAGAGTCCTGGGGTTCCTGGAGAAGTaGACCGCACAGGAGACGCCG | + |
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Preference number: 4 (lower is better) Translates to: HSRLVGVHLPGTRLWRVLGFLEK*TAQETP Trigger: CGGCGTCTCCTGTGCGGTGCACTTCTCCAGGAACCC...CAGGACTCTCCAGAGGCGGGTCCCTGGCAAATGAACACCCACTAGTCGGGAATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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| CDS-3UTR CCA 90 bp | CTTCTTTGGGAGTGTGTGCAGATGAGGACCGTCCGCCATGCTTCCCAGCTGAGACAATGGCCACCCACTTaGCGTTCCGCCCCAGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: LLWECVQMRTVRHASQLRQWPPT*RSAPAS Trigger: GGAGGCTGGGGCGGAACGCCAAGTGGGTGGCCATTG...TCTCAGCTGGGAAGCATGGCGGACGGTCCTCATCTGCACACACTCCCAAAGAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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| CDS-3UTR CCA 90 bp | TTGGGAGTGTGTGCAGATGAGGACCGTCCGCCATGCTTCCCAGCTGAGAGCTGTTCCGCCCCAGCCTCCTaGCTCCTTCGTAGTCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: LGVCADEDRPPCFPAESCSAPAS*LLRSLH Trigger: ATGGAGACTACGAAGGAGCCAGGAGGCTGGGGCGGA...ACAGCTCTCAGCTGGGAAGCATGGCGGACGGTCCTCATCTGCACACACTCCCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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| CDS-3UTR GCA 90 bp | CCTCAGAAACTTCTTTGGGAGTGTGTGCAGATGAGGACCGTCCGCCATGCTTCCGGGTTCCTGGAGAAGTaGACCGCACAGGAGACGCCG | + |
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Preference number: 4 (lower is better) Translates to: PQKLLWECVQMRTVRHASGFLEK*TAQETP Trigger: CGGCGTCTCCTGTGCGGTGCACTTCTCCAGGAACCC...GGAAGCATGGCGGACGGTCCTCATCTGCACACACTCCCAAAGAAGTTTCTGAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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| CDS-3UTR CCA 90 bp | CCTCAGAAACTTCTTTGGGAGTGTGTGCAGATGAGGACCGTCCGCCATGCTTCCACGGTTCGTGCAGCCTaGGGCTCTGGCTGTCGACTC | + |
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Preference number: 4 (lower is better) Translates to: PQKLLWECVQMRTVRHASTVRAA*GSGCRL Trigger: GAGTCGACAGCCAGAGCCCCAGGCTGCACGAACCGT...GGAAGCATGGCGGACGGTCCTCATCTGCACACACTCCCAAAGAAGTTTCTGAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239438.2 |
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| CDS-3UTR TCA 90 bp | CCTCAGAAACTTCTTTGGGAGTGTGTGCAGATGAGGACCGTCCGCCATGCTTCCCCAAAGCCACGATGTTaGCCGGGTACGCTGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: PQKLLWECVQMRTVRHASPKPRC*PGTLGR Trigger: TCTGCCCAGCGTACCCGGTCAACATCGTGGCTTTGG...GGAAGCATGGCGGACGGTCCTCATCTGCACACACTCCCAAAGAAGTTTCTGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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| CDS-3UTR TCA 90 bp | CAGAAACTTCTTTGGGAGTGTGTGCAGATGAGGACCGTCCGCCATGCTTCCCAGCCAAAGCCACGATGTTaGCCGGGTACGCTGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: QKLLWECVQMRTVRHASQPKPRC*PGTLGR Trigger: TCTGCCCAGCGTACCCGGTCAACATCGTGGCTTTGG...CTGGGAAGCATGGCGGACGGTCCTCATCTGCACACACTCCCAAAGAAGTTTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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| CDS-3UTR TCA 90 bp | CCAGCATTCACAGCTCTCCCTGAAAGCCACCTGCGCCCCTCGCCGCCCCCAAATAGCTGTTCAGAGACATaGTGGAGAAGACCAAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: PAFTALPESHLRPSPPPNSCSET*WRRPKP Trigger: TGGCTTTGGTCTTCTCCATCATGTCTCTGAACAGCT...ATTTGGGGGCGGCGAGGGGCGCAGGTGGCTTTCAGGGAGAGCTGTGAATGCTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| 3UTR CAA 72 bp | CTGAGCTCCGTACATTCCCGACTAGTGGGTGTTCATTaGCCAGGGACCCGCCTCTGGAGAGTCCTGGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: LSSVHSRLVGVH*PGTRLWRVLEE Trigger: TTCCTCCAGGACTCTCCAGAGGCGGGTCCCTGGCAAATGAACACCCACTAGTCGGGAATGTACGGAGCTCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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| CDS-3UTR GCA 90 bp | CTTCTTTGGGAGTGTGTGCAGATGAGGACCGTCCGCCATGCTTCCCAGCTGAGAAGGCTTCCGGGCTGCTaGTGTCCAAAGCTCCTTTTG | + |
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Preference number: 4 (lower is better) Translates to: LLWECVQMRTVRHASQLRRLPGC*CPKLLL Trigger: CAAAAGGAGCTTTGGACAGCAGCAGCCCGGAAGCCT...TCTCAGCTGGGAAGCATGGCGGACGGTCCTCATCTGCACACACTCCCAAAGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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| CDS-3UTR TCA 90 bp | TCCCGACTAGTGGGTGTTCATTTGCCAGGGACCCGCCTCTGGAGAGTCCTGGAGAGCTGTTCAGAGACATaGTGGAGAAGACCAAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: SRLVGVHLPGTRLWRVLESCSET*WRRPKP Trigger: TGGCTTTGGTCTTCTCCATCATGTCTCTGAACAGCT...CTCCAGGACTCTCCAGAGGCGGGTCCCTGGCAAATGAACACCCACTAGTCGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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| CDS-3UTR GCA 90 bp | CCTCAGAAACTTCTTTGGGAGTGTGTGCAGATGAGGACCGTCCGCCATGCTTCCAGGCTTCCGGGCTGCTaGTGTCCAAAGCTCCTTTTG | + |
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Preference number: 4 (lower is better) Translates to: PQKLLWECVQMRTVRHASRLPGC*CPKLLL Trigger: CAAAAGGAGCTTTGGACAGCAGCAGCCCGGAAGCCT...GGAAGCATGGCGGACGGTCCTCATCTGCACACACTCCCAAAGAAGTTTCTGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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| 3UTR CAA 72 bp | TGGAGACCAAGACTGGACCTGAAGGCCACTGTCTCTTaGCTACGGTGGGCAATGACTGGTGTTGTGGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: WRPRLDLKATVS*LRWAMTGVVGR Trigger: CCTTCCCACAACACCAGTCATTGCCCACCGTAGCAAAGAGACAGTGGCCTTCAGGTCCAGTCTTGGTCTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| CDS-3UTR CCA 90 bp | TACAGTTTTAAAATCAAGGATCCATTCCTCAGAAACTTCTTTGGGAGTGTGTGCTCCGCCCCAGCCTCCTaGCTCCTTCGTAGTCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: YSFKIKDPFLRNFFGSVCSAPAS*LLRSLH Trigger: ATGGAGACTACGAAGGAGCCAGGAGGCTGGGGCGGA...GCACACACTCCCAAAGAAGTTTCTGAGGAATGGATCCTTGATTTTAAAACTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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| 3UTR CAA 72 bp | GTTTTAAAATCAAGGATCCATTCCTCAGAAACTTCTTaGGGAGTGTGTGCAGATGAGGACCGTCCGCCATGC | + |
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Preference number: 4 (lower is better) Translates to: VLKSRIHSSETS*GVCADEDRPPC Trigger: GCATGGCGGACGGTCCTCATCTGCACACACTCCCAAAGAAGTTTCTGAGGAATGGATCCTTGATTTTAAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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| 3UTR CAA 72 bp | CAAACACCTTCAATCCACTATCAATGTGCTTCATATTaGTTTAGTGCACAGAGTCTCCCCGCCTCAGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: QTPSIHYQCASY*FSAQSLPASGA Trigger: TGCCCCTGAGGCGGGGAGACTCTGTGCACTAAACAAATATGAAGCACATTGATAGTGGATTGAAGGTGTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| CDS-3UTR CAA 90 bp | TTTGGGGAAAGACCAGGGACTGAAACACACAAACAGGATATAAGAATCAGGATCACCAAAGCCACGATGTaGACCGGGTACGCTGGGCAG | + |
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Preference number: 5 (lower is better) Translates to: FGERPGTETHKQDIRIRITKATM*TGYAGQ Trigger: CTGCCCAGCGTACCCGGTCAACATCGTGGCTTTGGT...GATCCTGATTCTTATATCCTGTTTGTGTGTTTCAGTCCCTGGTCTTTCCCCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111997.3 |
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| CDS-3UTR CAA 90 bp | TACAGTTTTAAAATCAAGGATCCATTCCTCAGAAACTTCTTTGGGAGTGTGTGCACCAAAGCCACGATGTaGACCGGGTACGCTGGGCAG | + |
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Preference number: 5 (lower is better) Translates to: YSFKIKDPFLRNFFGSVCTKATM*TGYAGQ Trigger: CTGCCCAGCGTACCCGGTCAACATCGTGGCTTTGGT...GCACACACTCCCAAAGAAGTTTCTGAGGAATGGATCCTTGATTTTAAAACTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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| CDS CCA 72 bp | CAATGGCCACCCACTTGGCGTTCCGCCCCAGCCTCCTaGCTCCTTCGTAGTCTCCATCATTGTAGCTGTTCA | + |
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Preference number: 6 (lower is better) Translates to: QWPPTWRSAPAS*LLRSLHHCSCS Trigger: TGAACAGCTACAATGATGGAGACTACGAAGGAGCCAGGAGGCTGGGGCGGAACGCCAAGTGGGTGGCCATTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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| CDS CCA 72 bp | CTCCTTTTGAGTCTGAGCGGGAAGCATACTGAGACATaGGCGAAGTCGGTGACACCGGGAGGGATGAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: LLLSLSGKHTET*AKSVTPGGMRS Trigger: GCTCCTCATCCCTCCCGGTGTCACCGACTTCGCCCATGTCTCAGTATGCTTCCCGCTCAGACTCAAAAGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239438.2 |
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| CDS GCA 72 bp | CCTCGGTCTTGTCATCTTCTGTATAGGCTTCCGGGCTaGTGCTGTCCAAAGCTCCTTTTGAGTCTGAGCGGG | + |
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Preference number: 6 (lower is better) Translates to: PRSCHLLYRLPG*CCPKLLLSLSG Trigger: CCCGCTCAGACTCAAAAGGAGCTTTGGACAGCAGCAGCCCGGAAGCCTATACAGAAGATGACAAGACCGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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| CDS CAA 72 bp | TATAGGCTTCCGGGCTGCTGCTGTCCAAAGCTCCTTTaGAGTCTGAGCGGGAAGCATACTGAGACATGGGCG | + |
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Preference number: 6 (lower is better) Translates to: YRLPGCCCPKLL*SLSGKHTETWA Trigger: CGCCCATGTCTCAGTATGCTTCCCGCTCAGACTCAAAAGGAGCTTTGGACAGCAGCAGCCCGGAAGCCTATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239438.2 |
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| CDS CAA 90 bp | CATCTTCTGTATAGGCTTCCGGGCTGCTGCTGTCCAAAGCTCCTTTaGAGTCTGAGCGGGAAGCATACTGAGACATGGGCGAAGTCGGTG | + |
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Preference number: 6 (lower is better) Translates to: HLLYRLPGCCCPKLL*SLSGKHTETWAKSV Trigger: CACCGACTTCGCCCATGTCTCAGTATGCTTCCCGCTCAGACTCAAAAGGAGCTTTGGACAGCAGCAGCCCGGAAGCCTATACAGAAGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239438.2 |
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| CDS CAA 72 bp | TTCAGAGACATGATGGAGAAGACCAAAGCCACGATGTaGACCGGGTACGCTGGGCAGAAACACGAGATAATG | + |
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Preference number: 6 (lower is better) Translates to: FRDMMEKTKATM*TGYAGQKHEIM Trigger: CATTATCTCGTGTTTCTGCCCAGCGTACCCGGTCAACATCGTGGCTTTGGTCTTCTCCATCATGTCTCTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111997.3 ENSMUST00000239438.2 |
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