Pregenerated sensors for TMEM223 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000117924Ensembl transcript IDs: ENSMUST00000010248.4
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | CCTTTTGGAAGAGATTTATTGGCTGTTAGTGAATTCTaGGCACCTTTTTATTGTCCTGGTAGTCTCCTCATC | + |
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Preference number: 3 (lower is better) Translates to: PFGRDLLAVSEF*APFYCPGSLLI Trigger: GATGAGGAGACTACCAGGACAATAAAAAGGTGCCCAGAATTCACTAACAGCCAATAAATCTCTTCCAAAAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| 3UTR CCA 72 bp | AGTAGGCATGTATCAAGCCTTTTGGAAGAGATTTATTaGCTGTTAGTGAATTCTGGGCACCTTTTTATTGTC | + |
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Preference number: 3 (lower is better) Translates to: SRHVSSLLEEIY*LLVNSGHLFIV Trigger: GACAATAAAAAGGTGCCCAGAATTCACTAACAGCCAATAAATCTCTTCCAAAAGGCTTGATACATGCCTACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS-3UTR TCA 90 bp | CTGTTAGTGAATTCTGGGCACCTTTTTATTGTCCTGGTAGTCTCCTCATCCCTACCGCACAGATCGGAGTaGGTAGAGGAGACCAGCACC | + |
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Preference number: 4 (lower is better) Translates to: LLVNSGHLFIVLVVSSSLPHRSE*VEETST Trigger: GGTGCTGGTCTCCTCTACTCACTCCGATCTGTGCGG...TAGGGATGAGGAGACTACCAGGACAATAAAAAGGTGCCCAGAATTCACTAACAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS-3UTR GCA 90 bp | ATCAAGCCTTTTGGAAGAGATTTATTGGCTGTTAGTGAATTCTGGGCACCTTTTCCCGTAGCGCCAGAGTaGGGAGCGCAGGTCCTGGTA | + |
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Preference number: 4 (lower is better) Translates to: IKPFGRDLLAVSEFWAPFPVAPE*GAQVLV Trigger: TACCAGGACCTGCGCTCCGCACTCTGGCGCTACGGG...AAAAGGTGCCCAGAATTCACTAACAGCCAATAAATCTCTTCCAAAAGGCTTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS-3UTR TCA 90 bp | TGGCTGTTAGTGAATTCTGGGCACCTTTTTATTGTCCTGGTAGTCTCCTCATCCGGTTCAAGGGAACTGTaGAACAGGTACCCAAGCCAA | + |
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Preference number: 4 (lower is better) Translates to: WLLVNSGHLFIVLVVSSSGSREL*NRYPSQ Trigger: TTGGCTTGGGTACCTGTTTCACAGTTCCCTTGAACC...GGATGAGGAGACTACCAGGACAATAAAAAGGTGCCCAGAATTCACTAACAGCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS-3UTR GCA 90 bp | TTGGAAGAGATTTATTGGCTGTTAGTGAATTCTGGGCACCTTTTTATTGTCCTGCACCTGCTGCCCTCCTaGAAGGAGCATGACAGACCG | + |
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Preference number: 4 (lower is better) Translates to: LEEIYWLLVNSGHLFIVLHLLPS*KEHDRP Trigger: CGGTCTGTCATGCTCCTTGCAGGAGGGCAGCAGGTG...CAGGACAATAAAAAGGTGCCCAGAATTCACTAACAGCCAATAAATCTCTTCCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS-3UTR TCA 90 bp | TTGGAAGAGATTTATTGGCTGTTAGTGAATTCTGGGCACCTTTTTATTGTCCTGCTCCTGCAAGGAGCATaGCAGACCGCACAGATCGGA | + |
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Preference number: 4 (lower is better) Translates to: LEEIYWLLVNSGHLFIVLLLQGA*QTAQIG Trigger: TCCGATCTGTGCGGTCTGTCATGCTCCTTGCAGGAG...CAGGACAATAAAAAGGTGCCCAGAATTCACTAACAGCCAATAAATCTCTTCCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS-3UTR CCA 90 bp | GGAAGAGATTTATTGGCTGTTAGTGAATTCTGGGCACCTTTTTATTGTCCTGGTCAAAGGGGGCATAGGTaGTCAATGTCACCTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: GRDLLAVSEFWAPFYCPGQRGHR*SMSPAA Trigger: GGCAGCAGGTGACATTGACCACCTATGCCCCCTTTG...ACCAGGACAATAAAAAGGTGCCCAGAATTCACTAACAGCCAATAAATCTCTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS-3UTR TCA 90 bp | GCATGTATCAAGCCTTTTGGAAGAGATTTATTGGCTGTTAGTGAATTCTGGGCAGGAACTTCACCTCTGTaGGCCATGCAGGAAATCTGG | + |
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Preference number: 4 (lower is better) Translates to: ACIKPFGRDLLAVSEFWAGTSPL*AMQEIW Trigger: CCAGATTTCCTGCATGGCTCACAGAGGTGAAGTTCC...TGCCCAGAATTCACTAACAGCCAATAAATCTCTTCCAAAAGGCTTGATACATGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS-3UTR GCA 90 bp | AGGCATGTATCAAGCCTTTTGGAAGAGATTTATTGGCTGTTAGTGAATTCTGGGCACCTCTGTGAGCCATaGAGGAAATCTGGTTCAAGG | + |
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Preference number: 4 (lower is better) Translates to: RHVSSLLEEIYWLLVNSGHLCEP*RKSGSR Trigger: CCTTGAACCAGATTTCCTGCATGGCTCACAGAGGTG...CCCAGAATTCACTAACAGCCAATAAATCTCTTCCAAAAGGCTTGATACATGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS-3UTR CCA 90 bp | ATCAAGCCTTTTGGAAGAGATTTATTGGCTGTTAGTGAATTCTGGGCACCTTTTAAAACAGTCCAAGGATaGCAAAGAAGCGGCCCCGCT | + |
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Preference number: 4 (lower is better) Translates to: IKPFGRDLLAVSEFWAPFKTVQG*QRSGPA Trigger: AGCGGGGCCGCTTCTTTGCCATCCTTGGACTGTTTT...AAAAGGTGCCCAGAATTCACTAACAGCCAATAAATCTCTTCCAAAAGGCTTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS-3UTR TCA 90 bp | TTATTGGCTGTTAGTGAATTCTGGGCACCTTTTTATTGTCCTGGTAGTCTCCTCGTGTTATCAAAGAGTTaGGTGTTGGGAAAGTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: LLAVSEFWAPFYCPGSLLVLSKS*VLGKCP Trigger: TGGACACTTTCCCAACACTCAACTCTTTGATAACAC...GAGGAGACTACCAGGACAATAAAAAGGTGCCCAGAATTCACTAACAGCCAATAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS GCA 90 bp | GACTCCCATCGTGCCGCAACCAACAGCCAGCCCGTAGCGCCAGAGTaGGGAGCGCAGGTCCTGGTAGCTCCGGTTCGGAGCCTCCGCAGG | + |
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Preference number: 5 (lower is better) Translates to: DSHRAATNSQPVAPE*GAQVLVAPVRSLRR Trigger: CCTGCGGAGGCTCCGAACCGGAGCTACCAGGACCTGCGCTCCGCACTCTGGCGCTACGGGCTGGCTGTTGGTTGCGGCACGATGGGAGTC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS GCA 90 bp | GGAGTGAGTAGAGGAGACCAGCACCAAGGACCAAGACTCCCATCGTaGCGCAACCAACAGCCAGCCCGTAGCGCCAGAGTGCGGAGCGCA | + |
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Preference number: 5 (lower is better) Translates to: GVSRGDQHQGPRLPS*RNQQPARSARVRSA Trigger: TGCGCTCCGCACTCTGGCGCTACGGGCTGGCTGTTGGTTGCGGCACGATGGGAGTCTTGGTCCTTGGTGCTGGTCTCCTCTACTCACTCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS CCA 90 bp | GGGAGGTCCAGAAGATGCCCTGACCCGCACAAAACAGTCCAAGGATaGCAAAGAAGCGGCCCCGCTCGTGCCGGAAGAGCAGCACATCCC | + |
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Preference number: 5 (lower is better) Translates to: GRSRRCPDPHKTVQG*QRSGPARAGRAAHP Trigger: GGGATGTGCTGCTCTTCCGGCACGAGCGGGGCCGCTTCTTTGCCATCCTTGGACTGTTTTGTGCGGGTCAGGGCATCTTCTGGACCTCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS TCA 90 bp | GGTCTGGACAAGGCTGCAACAGCCAGGGAGGTCCAGAAGATGCCCTaGCCCGCACAAAACAGTCCAAGGATGGCAAAGAAGCGGCCCCGC | + |
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Preference number: 5 (lower is better) Translates to: GLDKAATAREVQKMP*PAQNSPRMAKKRPR Trigger: GCGGGGCCGCTTCTTTGCCATCCTTGGACTGTTTTGTGCGGGTCAGGGCATCTTCTGGACCTCCCTGGCTGTTGCAGCCTTGTCCAGACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS TCA 90 bp | CTGCTGCCCTCCTGCAAGGAGCATGACAGACCGCACAGATCGGAGTaGGTAGAGGAGACCAGCACCAAGGACCAAGACTCCCATCGTGCC | + |
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Preference number: 5 (lower is better) Translates to: LLPSCKEHDRPHRSE*VEETSTKDQDSHRA Trigger: GGCACGATGGGAGTCTTGGTCCTTGGTGCTGGTCTCCTCTACTCACTCCGATCTGTGCGGTCTGTCATGCTCCTTGCAGGAGGGCAGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS TCA 90 bp | GGGCATAGGTGGTCAATGTCACCTGCTGCCCTCCTGCAAGGAGCATaGCAGACCGCACAGATCGGAGTGAGTAGAGGAGACCAGCACCAA | + |
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Preference number: 5 (lower is better) Translates to: GHRWSMSPAALLQGA*QTAQIGVSRGDQHQ Trigger: TTGGTGCTGGTCTCCTCTACTCACTCCGATCTGTGCGGTCTGTCATGCTCCTTGCAGGAGGGCAGCAGGTGACATTGACCACCTATGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS CCA 90 bp | ACAGGCTCCGGTAGGCACCCACAGTGTTATCAAAGAGTTGAGTGTTaGGAAAGTGTCCAGCTTTGTCCAAAAGGAAGTAGAAGCGCCGGC | + |
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Preference number: 5 (lower is better) Translates to: TGSGRHPQCYQRVEC*ESVQLCPKGSRSAG Trigger: GCCGGCGCTTCTACTTCCTTTTGGACAAAGCTGGACACTTTCCCAACACTCAACTCTTTGATAACACTGTGGGTGCCTACCGGAGCCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS-3UTR CAA 90 bp | CTGTTAGTGAATTCTGGGCACCTTTTTATTGTCCTGGTAGTCTCCTCATCCCTAAGTGTTATCAAAGAGTaGAGTGTTGGGAAAGTGTCC | + |
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Preference number: 5 (lower is better) Translates to: LLVNSGHLFIVLVVSSSLSVIKE*SVGKVS Trigger: GGACACTTTCCCAACACTCAACTCTTTGATAACACT...TAGGGATGAGGAGACTACCAGGACAATAAAAAGGTGCCCAGAATTCACTAACAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS GCA 72 bp | CGTGCCGCAACCAACAGCCAGCCCGTAGCGCCAGAGTaGGGAGCGCAGGTCCTGGTAGCTCCGGTTCGGAGC | + |
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Preference number: 6 (lower is better) Translates to: RAATNSQPVAPE*GAQVLVAPVRS Trigger: GCTCCGAACCGGAGCTACCAGGACCTGCGCTCCGCACTCTGGCGCTACGGGCTGGCTGTTGGTTGCGGCACG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS GCA 72 bp | AGAGGAGACCAGCACCAAGGACCAAGACTCCCATCGTaGCGCAACCAACAGCCAGCCCGTAGCGCCAGAGTG | + |
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Preference number: 6 (lower is better) Translates to: RGDQHQGPRLPS*RNQQPARSARV Trigger: CACTCTGGCGCTACGGGCTGGCTGTTGGTTGCGGCACGATGGGAGTCTTGGTCCTTGGTGCTGGTCTCCTCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS GCA 72 bp | AACAGTCCAAGGATGGCAAAGAAGCGGCCCCGCTCGTaGCGGAAGAGCAGCACATCCCGTGGGACGCCATTT | + |
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Preference number: 6 (lower is better) Translates to: NSPRMAKKRPRS*RKSSTSRGTPF Trigger: AAATGGCGTCCCACGGGATGTGCTGCTCTTCCGGCACGAGCGGGGCCGCTTCTTTGCCATCCTTGGACTGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS CCA 72 bp | AGAAGATGCCCTGACCCGCACAAAACAGTCCAAGGATaGCAAAGAAGCGGCCCCGCTCGTGCCGGAAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: RRCPDPHKTVQG*QRSGPARAGRA Trigger: TGCTCTTCCGGCACGAGCGGGGCCGCTTCTTTGCCATCCTTGGACTGTTTTGTGCGGGTCAGGGCATCTTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS TCA 72 bp | TCCTGCAAGGAGCATGACAGACCGCACAGATCGGAGTaGGTAGAGGAGACCAGCACCAAGGACCAAGACTCC | + |
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Preference number: 6 (lower is better) Translates to: SCKEHDRPHRSE*VEETSTKDQDS Trigger: GGAGTCTTGGTCCTTGGTGCTGGTCTCCTCTACTCACTCCGATCTGTGCGGTCTGTCATGCTCCTTGCAGGA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS GCA 72 bp | TGGACAAGGCTGCAACAGCCAGGGAGGTCCAGAAGATaGCCTGACCCGCACAAAACAGTCCAAGGATGGCAA | + |
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Preference number: 6 (lower is better) Translates to: WTRLQQPGRSRR*PDPHKTVQGWQ Trigger: TTGCCATCCTTGGACTGTTTTGTGCGGGTCAGGGCATCTTCTGGACCTCCCTGGCTGTTGCAGCCTTGTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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| CDS CCA 72 bp | GGTAGGCACCCACAGTGTTATCAAAGAGTTGAGTGTTaGGAAAGTGTCCAGCTTTGTCCAAAAGGAAGTAGA | + |
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Preference number: 6 (lower is better) Translates to: GRHPQCYQRVEC*ESVQLCPKGSR Trigger: TCTACTTCCTTTTGGACAAAGCTGGACACTTTCCCAACACTCAACTCTTTGATAACACTGTGGGTGCCTACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010248.4 |
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