RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMEM218 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032121

Ensembl transcript IDs: ENSMUST00000034632.10

Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGTGAGAGAGACTGGCTTCTGCCACATCTGGGTTTGCCAACTGGCTaGTGTGTGAAGCCTGGGAGAGTTCATCACCTTAAACTTCAAGAT +
Preference number: 1 (lower is better)
Translates to: CERDWLLPHLGLPTG*CVKPGRVHHLKLQD
Trigger: ATCTTGAAGTTTAAGGTGATGAACTCTCCCAGGCTTCACACAGCAGCCAGTTGGCAAACCCAGATGTGGCAGAAGCCAGTCTCTCTCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR TCA 90 bp GAGACTGGCTTCTGCCACATCTGGGTTTGCCAACTGGCTGCTGTGTaGAGCCTGGGAGAGTTCATCACCTTAAACTTCAAGATTTTTCTA +
Preference number: 1 (lower is better)
Translates to: ETGFCHIWVCQLAAV*SLGEFITLNFKIFL
Trigger: TAGAAAAATCTTGAAGTTTAAGGTGATGAACTCTCCCAGGCTTCACACAGCAGCCAGTTGGCAAACCCAGATGTGGCAGAAGCCAGTCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR CCA 90 bp CAGAGCAATTGTTCTTCAAGACACAATGTAAGTAGAGGGATAGGATaGTCGAGTATGTGTACAAGGACCTGGGATCAATCTGTAGAACTG +
Preference number: 1 (lower is better)
Translates to: QSNCSSRHNVSRGIG*SSMCTRTWDQSVEL
Trigger: CAGTTCTACAGATTGATCCCAGGTCCTTGTACACATACTCGACCATCCTATCCCTCTACTTACATTGTGTCTTGAAGAACAATTGCTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR CCA 90 bp AATTCTAGAGAAGATTTCCAAGATGAAAACACAGAGGCAGACATGTaGGGCACATCTGTAATCCTAGTACCCAAGAAACCTGAGGCAGAA +
Preference number: 1 (lower is better)
Translates to: NSREDFQDENTEADM*GTSVILVPKKPEAE
Trigger: TTCTGCCTCAGGTTTCTTGGGTACTAGGATTACAGATGTGCCCCACATGTCTGCCTCTGTGTTTTCATCTTGGAAATCTTCTCTAGAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR-3UTR TCA 90 bp GTCTTTACAGAGCTCTGTGGAACTGCACATAAGGAATGGTCAATAACCGCTGCCACTCGGCTTTGCCACTaGGTTTCTGGAGGCCAGGGC +
Preference number: 2 (lower is better)
Translates to: VFTELCGTAHKEWSITAATRLCH*VSGGQG
Trigger: GCCCTGGCCTCCAGAAACTCAGTGGCAAAGCCGAGT...GGCAGCGGTTATTGACCATTCCTTATGTGCAGTTCCACAGAGCTCTGTAAAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR-3UTR CCA 90 bp GTCTTTACAGAGCTCTGTGGAACTGCACATAAGGAATGGTCAATAACCGCTGCCTTGCCACTGAGTTTCTaGAGGCCAGGGCTCAGGAGG +
Preference number: 2 (lower is better)
Translates to: VFTELCGTAHKEWSITAALPLSF*RPGLRR
Trigger: CCTCCTGAGCCCTGGCCTCCAGAAACTCAGTGGCAA...GGCAGCGGTTATTGACCATTCCTTATGTGCAGTTCCACAGAGCTCTGTAAAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR CAA 90 bp GTTTTCTTCTATTGTGAGAGAGACTGGCTTCTGCCACATCTGGGTTaGCCAACTGGCTGCTGTGTGAAGCCTGGGAGAGTTCATCACCTT +
Preference number: 2 (lower is better)
Translates to: VFFYCERDWLLPHLG*PTGCCVKPGRVHHL
Trigger: AAGGTGATGAACTCTCCCAGGCTTCACACAGCAGCCAGTTGGCAAACCCAGATGTGGCAGAAGCCAGTCTCTCTCACAATAGAAGAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR CAA 90 bp ACACCTTTCCTGCTTGTTCTCCTGGCTCTCAGACTCCTCTTCACATaGCTCTGGAAAGACAAGGTAGCACTTCCAAAGCAGAACCAGACT +
Preference number: 2 (lower is better)
Translates to: TPFLLVLLALRLLFT*LWKDKVALPKQNQT
Trigger: AGTCTGGTTCTGCTTTGGAAGTGCTACCTTGTCTTTCCAGAGCAATGTGAAGAGGAGTCTGAGAGCCAGGAGAACAAGCAGGAAAGGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR-3UTR TCA 90 bp AGACCAGGCTGGTCTCAAACTCAGAAATGGACTTTTCTGTACTCCATCAACGGTTCTGGTCTGAAGACATaGAGGTGGTCAGGCTCCAGA +
Preference number: 2 (lower is better)
Translates to: RPGWSQTQKWTFLYSINGSGLKT*RWSGSR
Trigger: TCTGGAGCCTGACCACCTTCATGTCTTCAGACCAGA...ACCGTTGATGGAGTACAGAAAAGTCCATTTCTGAGTTTGAGACCAGCCTGGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR-3UTR TCA 90 bp TTCTATTGTGAGAGAGACTGGCTTCTGCCACATCTGGGTTTGCCAACTGGCTGCTACCCACAGCTTGATTaGACAATGTACCCAAAGCAG +
Preference number: 2 (lower is better)
Translates to: FYCERDWLLPHLGLPTGCYPQLD*TMYPKQ
Trigger: CTGCTTTGGGTACATTGTTCAATCAAGCTGTGGGTA...GCAGCCAGTTGGCAAACCCAGATGTGGCAGAAGCCAGTCTCTCTCACAATAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR-3UTR TCA 90 bp TGCTTGTTCTCCTGGCTCTCAGACTCCTCTTCACATTGCTCTGGAAAGACAAGGAAAAAGAGCCAGGCCTaGTGGTTCAGGCCTAAAATC +
Preference number: 2 (lower is better)
Translates to: CLFSWLSDSSSHCSGKTRKKSQA*WFRPKI
Trigger: GATTTTAGGCCTGAACCATCAGGCCTGGCTCTTTTT...CCTTGTCTTTCCAGAGCAATGTGAAGAGGAGTCTGAGAGCCAGGAGAACAAGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR-3UTR TCA 90 bp TTTTCTTCTATTGTGAGAGAGACTGGCTTCTGCCACATCTGGGTTTGCCAACTGAGTACCCAAGAAACCTaGGGCAGAAGGAGCCAGAGT +
Preference number: 2 (lower is better)
Translates to: FSSIVRETGFCHIWVCQLSTQET*GRRSQS
Trigger: ACTCTGGCTCCTTCTGCCTCAGGTTTCTTGGGTACT...CAGTTGGCAAACCCAGATGTGGCAGAAGCCAGTCTCTCTCACAATAGAAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR-3UTR CCA 90 bp TTCTATTGTGAGAGAGACTGGCTTCTGCCACATCTGGGTTTGCCAACTGGCTGCAGAGGCCACCAAATTTaGGAGAAAAAGGACCCAAGA +
Preference number: 2 (lower is better)
Translates to: FYCERDWLLPHLGLPTGCRGHQI*EKKDPR
Trigger: TCTTGGGTCCTTTTTCTCCCAAATTTGGTGGCCTCT...GCAGCCAGTTGGCAAACCCAGATGTGGCAGAAGCCAGTCTCTCTCACAATAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR-3UTR GCA 90 bp TTGGGAGAAAAAGGACCCAAGATACATGGCAGGAAGGCATCTAACATTTCCATAATGGTCAATAACCGCTaGCTAATGCATCTTCCATAC +
Preference number: 2 (lower is better)
Translates to: LGEKGPKIHGRKASNISIMVNNR*LMHLPY
Trigger: GTATGGAAGATGCATTAGGCAGCGGTTATTGACCAT...TATGGAAATGTTAGATGCCTTCCTGCCATGTATCTTGGGTCCTTTTTCTCCCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR CAA 90 bp AACCGCTGCCTAATGCATCTTCCATACTATCTCATTAAAGCAATTTaGTGTTTGTATGCCTCTCTCTTCCAAATGGTTCCAAATACTCAA +
Preference number: 2 (lower is better)
Translates to: NRCLMHLPYYLIKAI*CLYASLFQMVPNTQ
Trigger: TTGAGTATTTGGAACCATTTGGAAGAGAGAGGCATACAAACACAAAATTGCTTTAATGAGATAGTATGGAAGATGCATTAGGCAGCGGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR CCA 72 bp GAGAGACTGGCTTCTGCCACATCTGGGTTTGCCAACTaGCTGCTGTGTGAAGCCTGGGAGAGTTCATCACCT +
Preference number: 3 (lower is better)
Translates to: ERLASATSGFAN*LLCEAWESSSP
Trigger: AGGTGATGAACTCTCCCAGGCTTCACACAGCAGCCAGTTGGCAAACCCAGATGTGGCAGAAGCCAGTCTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR TCA 72 bp GGTGACAATTTACATCCATGGACTCGGCTTTGCCACTaGGTTTCTGGAGGCCAGGGCTCAGGAGGTTTGCCT +
Preference number: 3 (lower is better)
Translates to: GDNLHPWTRLCH*VSGGQGSGGLP
Trigger: AGGCAAACCTCCTGAGCCCTGGCCTCCAGAAACTCAGTGGCAAAGCCGAGTCCATGGATGTAAATTGTCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR GCA 72 bp GACTGGCTTCTGCCACATCTGGGTTTGCCAACTGGCTaGTGTGTGAAGCCTGGGAGAGTTCATCACCTTAAA +
Preference number: 3 (lower is better)
Translates to: DWLLPHLGLPTG*CVKPGRVHHLK
Trigger: TTTAAGGTGATGAACTCTCCCAGGCTTCACACAGCAGCCAGTTGGCAAACCCAGATGTGGCAGAAGCCAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR CCA 72 bp TTTACATCCATGGACTCGGCTTTGCCACTGAGTTTCTaGAGGCCAGGGCTCAGGAGGTTTGCCTTAGTGACA +
Preference number: 3 (lower is better)
Translates to: FTSMDSALPLSF*RPGLRRFALVT
Trigger: TGTCACTAAGGCAAACCTCCTGAGCCCTGGCCTCCAGAAACTCAGTGGCAAAGCCGAGTCCATGGATGTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR-3UTR CAA 90 bp TTCTATTGTGAGAGAGACTGGCTTCTGCCACATCTGGGTTTGCCAACTGGCTGCCAGAGGCCACCAAATTaGGGAGAAAAAGGACCCAAG +
Preference number: 3 (lower is better)
Translates to: FYCERDWLLPHLGLPTGCQRPPN*GEKGPK
Trigger: CTTGGGTCCTTTTTCTCCCAAATTTGGTGGCCTCTG...GCAGCCAGTTGGCAAACCCAGATGTGGCAGAAGCCAGTCTCTCTCACAATAGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR-3UTR CAA 90 bp TTTTCTTCTATTGTGAGAGAGACTGGCTTCTGCCACATCTGGGTTTGCCAACTGTCCATGGACTCGGCTTaGCCACTGAGTTTCTGGAGG +
Preference number: 3 (lower is better)
Translates to: FSSIVRETGFCHIWVCQLSMDSA*PLSFWR
Trigger: CCTCCAGAAACTCAGTGGCAAAGCCGAGTCCATGGA...CAGTTGGCAAACCCAGATGTGGCAGAAGCCAGTCTCTCTCACAATAGAAGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR CCA 72 bp AGAGCAACAGGTCTCAACCTGAGTGTTGTGACCCTTTaGGGGTCAAATGACCCCTTCACGCAAGTAGGATAT +
Preference number: 3 (lower is better)
Translates to: RATGLNLSVVTL*GSNDPFTQVGY
Trigger: ATATCCTACTTGCGTGAAGGGGTCATTTGACCCCCAAAGGGTCACAACACTCAGGTTGAGACCTGTTGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR TCA 72 bp TTAGTGACAAATAGTTATCCCTCTGGTCTGAAGACATaGAGGTGGTCAGGCTCCAGACTGCCTTTGCGCTCA +
Preference number: 3 (lower is better)
Translates to: LVTNSYPSGLKT*RWSGSRLPLRS
Trigger: TGAGCGCAAAGGCAGTCTGGAGCCTGACCACCTTCATGTCTTCAGACCAGAGGGATAACTATTTGTCACTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR TCA 72 bp TCTCAACCTGAGTGTTGTGACCCTTTGGGGGTCAAATaGCCCCTTCACGCAAGTAGGATATCACATATCCTG +
Preference number: 3 (lower is better)
Translates to: SQPECCDPLGVK*PLHASRISHIL
Trigger: CAGGATATGTGATATCCTACTTGCGTGAAGGGGTCATTTGACCCCCAAAGGGTCACAACACTCAGGTTGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR-3UTR CAA 90 bp TTCTATTGTGAGAGAGACTGGCTTCTGCCACATCTGGGTTTGCCAACTGGCTGCTCTACTACCCACAGCTaGATTGAACAATGTACCCAA +
Preference number: 3 (lower is better)
Translates to: FYCERDWLLPHLGLPTGCSTTHS*IEQCTQ
Trigger: TTGGGTACATTGTTCAATCAAGCTGTGGGTAGTAGA...GCAGCCAGTTGGCAAACCCAGATGTGGCAGAAGCCAGTCTCTCTCACAATAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR-3UTR CAA 90 bp AGACCAGGCTGGTCTCAAACTCAGAAATGGACTTTTCTGTACTCCATCAACGGTGGCCGGCTTCTTCTGTaGGATAACAAAGCCCAAAAC +
Preference number: 3 (lower is better)
Translates to: RPGWSQTQKWTFLYSINGGRLLL*DNKAQN
Trigger: GTTTTGGGCTTTGTTATCCAACAGAAGAAGCCGGCC...ACCGTTGATGGAGTACAGAAAAGTCCATTTCTGAGTTTGAGACCAGCCTGGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR CCA 72 bp GCCTGTCTGGGCTACAGAGAAATTTCCAGGCCAGCCTaGAAAACAGAGCAATTGTTCTTCAAGACACAATGT +
Preference number: 3 (lower is better)
Translates to: ACLGYREISRPA*KTEQLFFKTQC
Trigger: ACATTGTGTCTTGAAGAACAATTGCTCTGTTTTCCAGGCTGGCCTGGAAATTTCTCTGTAGCCCAGACAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR CCA 72 bp GAAGATTTCCAAGATGAAAACACAGAGGCAGACATGTaGGGCACATCTGTAATCCTAGTACCCAAGAAACCT +
Preference number: 3 (lower is better)
Translates to: EDFQDENTEADM*GTSVILVPKKP
Trigger: AGGTTTCTTGGGTACTAGGATTACAGATGTGCCCCACATGTCTGCCTCTGTGTTTTCATCTTGGAAATCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR CCA 72 bp TGTTCTTCAAGACACAATGTAAGTAGAGGGATAGGATaGTCGAGTATGTGTACAAGGACCTGGGATCAATCT +
Preference number: 3 (lower is better)
Translates to: CSSRHNVSRGIG*SSMCTRTWDQS
Trigger: AGATTGATCCCAGGTCCTTGTACACATACTCGACCATCCTATCCCTCTACTTACATTGTGTCTTGAAGAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR-3UTR CAA 90 bp CTTCCAAAGCAGAACCAGACTCGACCCTCCACCCCAGTTAGTGACAAATTTAATTGGAAAACAGAGCAATaGTTCTTCAAGACACAATGT +
Preference number: 3 (lower is better)
Translates to: LPKQNQTRPSTPVSDKFNWKTEQ*FFKTQC
Trigger: ACATTGTGTCTTGAAGAACAATTGCTCTGTTTTCCA...ATTAAATTTGTCACTAACTGGGGTGGAGGGTCGAGTCTGGTTCTGCTTTGGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR TCA 72 bp ACTCGACCCTCCACCCCAGTTAGTGACAAATTTAATTaGTCTGGGAAGTTAGACAAATGTGAAGTTATACAA +
Preference number: 3 (lower is better)
Translates to: TRPSTPVSDKFN*SGKLDKCEVIQ
Trigger: TTGTATAACTTCACATTTGTCTAACTTCCCAGATCAATTAAATTTGTCACTAACTGGGGTGGAGGGTCGAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR TCA 72 bp ATGCCTCTCTCTTCCAAATGGTTCCAAATACTCAACTaGGAACTTATAATTTATACGTTATTAAAAAGGGCC +
Preference number: 3 (lower is better)
Translates to: MPLSSKWFQILN*ELIIYTLLKRA
Trigger: GGCCCTTTTTAATAACGTATAAATTATAAGTTCTCAGTTGAGTATTTGGAACCATTTGGAAGAGAGAGGCAT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR TCA 72 bp GGGAAGTTAGACAAATGTGAAGTTATACAACAATGCTaGGAATACACACTCCTTAGTAATTCTAGAGAAGAT +
Preference number: 3 (lower is better)
Translates to: GKLDKCEVIQQC*EYTLLSNSRED
Trigger: ATCTTCTCTAGAATTACTAAGGAGTGTGTATTCTCAGCATTGTTGTATAACTTCACATTTGTCTAACTTCCC
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
CDS-3UTR CCA 90 bp CTGGCTTCTGCCACATCTGGGTTTGCCAACTGGCTGCTGTGTGAAGCCTGGGAGGGGCTGGGAATTCACTaGCTCGAGGGAAAAGCAATA +
Preference number: 4 (lower is better)
Translates to: LASATSGFANWLLCEAWEGLGIH*LEGKAI
Trigger: TATTGCTTTTCCCTCGAGCCAGTGAATTCCCAGCCC...CTCCCAGGCTTCACACAGCAGCCAGTTGGCAAACCCAGATGTGGCAGAAGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR CAA 72 bp TATTGTGAGAGAGACTGGCTTCTGCCACATCTGGGTTaGCCAACTGGCTGCTGTGTGAAGCCTGGGAGAGTT +
Preference number: 4 (lower is better)
Translates to: YCERDWLLPHLG*PTGCCVKPGRV
Trigger: AACTCTCCCAGGCTTCACACAGCAGCCAGTTGGCAAACCCAGATGTGGCAGAAGCCAGTCTCTCTCACAATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR CAA 72 bp CTGCTTGTTCTCCTGGCTCTCAGACTCCTCTTCACATaGCTCTGGAAAGACAAGGTAGCACTTCCAAAGCAG +
Preference number: 4 (lower is better)
Translates to: LLVLLALRLLFT*LWKDKVALPKQ
Trigger: CTGCTTTGGAAGTGCTACCTTGTCTTTCCAGAGCAATGTGAAGAGGAGTCTGAGAGCCAGGAGAACAAGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
CDS-3UTR CCA 90 bp ATCAGCTCTGGGTCCCTAGTGAGACCTTGGAACCAACCAACTAACCAATTGACATCAGCAGGACCTCAGTaGTTTGGCATAGATTGGCTC +
Preference number: 4 (lower is better)
Translates to: ISSGSLVRPWNQPTNQLTSAGPQ*FGIDWL
Trigger: GAGCCAATCTATGCCAAACCACTGAGGTCCTGCTGA...TGTCAATTGGTTAGTTGGTTGGTTCCAAGGTCTCACTAGGGACCCAGAGCTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
CDS-3UTR CCA 90 bp ATTGCTTTATTAGAATTCAGGCAAGGGCCACACACTGTCTTTACAGAGCTCTGTTTCTCCTTCTGGGGCTaGGAATTCACTGGCTCGAGG +
Preference number: 4 (lower is better)
Translates to: IALLEFRQGPHTVFTELCFSFWG*EFTGSR
Trigger: CCTCGAGCCAGTGAATTCCCAGCCCCAGAAGGAGAA...ACAGAGCTCTGTAAAGACAGTGTGTGGCCCTTGCCTGAATTCTAATAAAGCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
CDS-3UTR CCA 90 bp TTCTATTGTGAGAGAGACTGGCTTCTGCCACATCTGGGTTTGCCAACTGGCTGCTGGTTTGGCATAGATTaGCTCCAGCAAATGATGAGT +
Preference number: 4 (lower is better)
Translates to: FYCERDWLLPHLGLPTGCWFGID*LQQMMS
Trigger: ACTCATCATTTGCTGGAGCCAATCTATGCCAAACCA...GCAGCCAGTTGGCAAACCCAGATGTGGCAGAAGCCAGTCTCTCTCACAATAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
CDS-3UTR CCA 90 bp AGACCAGGCTGGTCTCAAACTCAGAAATGGACTTTTCTGTACTCCATCAACGGTAGGACCTCAGTGGTTTaGCATAGATTGGCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: RPGWSQTQKWTFLYSINGRTSVV*HRLAPA
Trigger: TGCTGGAGCCAATCTATGCCAAACCACTGAGGTCCT...ACCGTTGATGGAGTACAGAAAAGTCCATTTCTGAGTTTGAGACCAGCCTGGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
CDS-3UTR TCA 90 bp TTGGGAGAAAAAGGACCCAAGATACATGGCAGGAAGGCATCTAACATTTCCATAGGACATAGCGGCCGATaGAAAAGGCGTCCACAATCT +
Preference number: 4 (lower is better)
Translates to: LGEKGPKIHGRKASNISIGHSGR*KRRPQS
Trigger: AGATTGTGGACGCCTTTTTCATCGGCCGCTATGTCC...TATGGAAATGTTAGATGCCTTCCTGCCATGTATCTTGGGTCCTTTTTCTCCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
CDS-3UTR CCA 90 bp GTTATAAAACTTAAGTCTCAAAGGAATTGCTACAGCCCAGGCATCGGATGGCACCTTCATTTCTCCTTCTaGGGCTGGGAATTCACTGGC +
Preference number: 4 (lower is better)
Translates to: VIKLKSQRNCYSPGIGWHLHFSF*GWEFTG
Trigger: GCCAGTGAATTCCCAGCCCCAGAAGGAGAAATGAAG...GTGCCATCCGATGCCTGGGCTGTAGCAATTCCTTTGAGACTTAAGTTTTATAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
CDS-3UTR TCA 90 bp TTGGGAGAAAAAGGACCCAAGATACATGGCAGGAAGGCATCTAACATTTCCATACAAGAAAGACAGCACTaGGGAAAGCCAGCAGGACAT +
Preference number: 4 (lower is better)
Translates to: LGEKGPKIHGRKASNISIQERQH*GKPAGH
Trigger: ATGTCCTGCTGGCTTTCCTCAGTGCTGTCTTTCTTG...TATGGAAATGTTAGATGCCTTCCTGCCATGTATCTTGGGTCCTTTTTCTCCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
CDS-3UTR CCA 90 bp TTGGGAGAAAAAGGACCCAAGATACATGGCAGGAAGGCATCTAACATTTCCATACTATCCCAGAGGCTCTaGATAACAGCACACACAGCA +
Preference number: 4 (lower is better)
Translates to: LGEKGPKIHGRKASNISILSQRL*ITAHTA
Trigger: TGCTGTGTGTGCTGTTATCCAGAGCCTCTGGGATAG...TATGGAAATGTTAGATGCCTTCCTGCCATGTATCTTGGGTCCTTTTTCTCCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR CAA 72 bp ACTAAATGTAAACATAACAAAGCTGCAGCCAGGGGCTaGAAGAGCAAGCCCTTTGGTAGCTGTTTATTGCTT +
Preference number: 4 (lower is better)
Translates to: TKCKHNKAAARG*KSKPFGSCLLL
Trigger: AAGCAATAAACAGCTACCAAAGGGCTTGCTCTTCAAGCCCCTGGCTGCAGCTTTGTTATGTTTACATTTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
3UTR CAA 72 bp CTAATGCATCTTCCATACTATCTCATTAAAGCAATTTaGTGTTTGTATGCCTCTCTCTTCCAAATGGTTCCA +
Preference number: 4 (lower is better)
Translates to: LMHLPYYLIKAI*CLYASLFQMVP
Trigger: TGGAACCATTTGGAAGAGAGAGGCATACAAACACAAAATTGCTTTAATGAGATAGTATGGAAGATGCATTAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
CDS-3UTR CAA 90 bp TTCTATTGTGAGAGAGACTGGCTTCTGCCACATCTGGGTTTGCCAACTGGCTGCGTGGTTTGGCATAGATaGGCTCCAGCAAATGATGAG +
Preference number: 5 (lower is better)
Translates to: FYCERDWLLPHLGLPTGCVVWHR*APANDE
Trigger: CTCATCATTTGCTGGAGCCAATCTATGCCAAACCAC...GCAGCCAGTTGGCAAACCCAGATGTGGCAGAAGCCAGTCTCTCTCACAATAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10
CDS CCA 72 bp GATGAAAAAGGCGTCCACAATCTTCATTTCTCCTTCTaGGGCTGGGAATTCACTGGCTCGAGGGAAAAGCAA +
Preference number: 6 (lower is better)
Translates to: DEKGVHNLHFSF*GWEFTGSREKQ
Trigger: TTGCTTTTCCCTCGAGCCAGTGAATTCCCAGCCCCAGAAGGAGAAATGAAGATTGTGGACGCCTTTTTCATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034632.10