RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMEM201 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044700

Ensembl transcript IDs: ENSMUST00000054459.11, ENSMUST00000103208.2, ENSMUST00000105687.9

Found 429 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACACGGGCTTGCACTGGGCGCAGACAGAGGGCACGGCGGGCGGGATaGACAGGCTGCCTGGGGATGGAGGGTGGCCTGCTCCAGGGCAAG +
Preference number: 1 (lower is better)
Translates to: TRACTGRRQRARRAG*TGCLGMEGGLLQGK
Trigger: CTTGCCCTGGAGCAGGCCACCCTCCATCCCCAGGCAGCCTGTCCATCCCGCCCGCCGTGCCCTCTGTCTGCGCCCAGTGCAAGCCCGTGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR GCA 90 bp CACGGCGGGCGGGATGGACAGGCTGCCTGGGGATGGAGGGTGGCCTaGTCCAGGGCAAGGGTTACTGGAGTCTGCTCTGCTCGGGCCAGC +
Preference number: 1 (lower is better)
Translates to: HGGRDGQAAWGWRVA*SRARVTGVCSARAS
Trigger: GCTGGCCCGAGCAGAGCAGACTCCAGTAACCCTTGCCCTGGAGCAGGCCACCCTCCATCCCCAGGCAGCCTGTCCATCCCGCCCGCCGTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 90 bp GGCTGCCTGGGGATGGAGGGTGGCCTGCTCCAGGGCAAGGGTTACTaGAGTCTGCTCTGCTCGGGCCAGCGTGGGCCCCAGACGCAGACG +
Preference number: 1 (lower is better)
Translates to: GCLGMEGGLLQGKGY*SLLCSGQRGPQTQT
Trigger: CGTCTGCGTCTGGGGCCCACGCTGGCCCGAGCAGAGCAGACTCCAGTAACCCTTGCCCTGGAGCAGGCCACCCTCCATCCCCAGGCAGCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 90 bp GAGGGCACGGCGGGCGGGATGGACAGGCTGCCTGGGGATGGAGGGTaGCCTGCTCCAGGGCAAGGGTTACTGGAGTCTGCTCTGCTCGGG +
Preference number: 1 (lower is better)
Translates to: EGTAGGMDRLPGDGG*PAPGQGLLESALLG
Trigger: CCCGAGCAGAGCAGACTCCAGTAACCCTTGCCCTGGAGCAGGCCACCCTCCATCCCCAGGCAGCCTGTCCATCCCGCCCGCCGTGCCCTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 90 bp CTGGGCGCAGACAGAGGGCACGGCGGGCGGGATGGACAGGCTGCCTaGGGATGGAGGGTGGCCTGCTCCAGGGCAAGGGTTACTGGAGTC +
Preference number: 1 (lower is better)
Translates to: LGADRGHGGRDGQAA*GWRVACSRARVTGV
Trigger: GACTCCAGTAACCCTTGCCCTGGAGCAGGCCACCCTCCATCCCCAGGCAGCCTGTCCATCCCGCCCGCCGTGCCCTCTGTCTGCGCCCAG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR GCA 90 bp CCAGCCCTGCCTGGAGCCAACAGTTGGGGCGAGATGGGCGGCTGCTaGCTGATGCAGGGAGCCGGGCCCTCTGGAGGGAACAGGTGTGAG +
Preference number: 1 (lower is better)
Translates to: PALPGANSWGEMGGC*LMQGAGPSGGNRCE
Trigger: CTCACACCTGTTCCCTCCAGAGGGCCCGGCTCCCTGCATCAGGCAGCAGCCGCCCATCTCGCCCCAACTGTTGGCTCCAGGCAGGGCTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR GCA 90 bp TGCCCAGCCCTGCCTGGAGCCAACAGTTGGGGCGAGATGGGCGGCTaGTGCCTGATGCAGGGAGCCGGGCCCTCTGGAGGGAACAGGTGT +
Preference number: 1 (lower is better)
Translates to: CPALPGANSWGEMGG*CLMQGAGPSGGNRC
Trigger: ACACCTGTTCCCTCCAGAGGGCCCGGCTCCCTGCATCAGGCAGCAGCCGCCCATCTCGCCCCAACTGTTGGCTCCAGGCAGGGCTGGGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CCA 90 bp GCAGACAGAGGGCACGGCGGGCGGGATGGACAGGCTGCCTGGGGATaGAGGGTGGCCTGCTCCAGGGCAAGGGTTACTGGAGTCTGCTCT +
Preference number: 1 (lower is better)
Translates to: ADRGHGGRDGQAAWG*RVACSRARVTGVCS
Trigger: AGAGCAGACTCCAGTAACCCTTGCCCTGGAGCAGGCCACCCTCCATCCCCAGGCAGCCTGTCCATCCCGCCCGCCGTGCCCTCTGTCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 90 bp GCCCACCCGAGAGGAGCCTGCCTCACAGACACAGCCAGGGCAGGCTaGACCCAAGGACGACCCTTGCTACTCCAGGGAAGGACCCTGAGG +
Preference number: 1 (lower is better)
Translates to: AHPRGACLTDTARAG*TQGRPLLLQGRTLR
Trigger: CCTCAGGGTCCTTCCCTGGAGTAGCAAGGGTCGTCCTTGGGTCCAGCCTGCCCTGGCTGTGTCTGTGAGGCAGGCTCCTCTCGGGTGGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR GCA 90 bp GGAGGGATCTCAGCGCCAGTGTCGGAAGCAGCATGCACCTGGCACTaGCCTCGGGAAGGGCACTCGGAGGTCAGCGCAGGCTCTGGTACA +
Preference number: 1 (lower is better)
Translates to: GGISAPVSEAACTWH*PREGHSEVSAGSGT
Trigger: TGTACCAGAGCCTGCGCTGACCTCCGAGTGCCCTTCCCGAGGGCAGTGCCAGGTGCATGCTGCTTCCGACACTGGCGCTGAGATCCCTCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CCA 90 bp GCTCCAGGGCAAGGGTTACTGGAGTCTGCTCTGCTCGGGCCAGCGTaGGCCCCAGACGCAGACGTGAGCAGTCTCCCTCCCTCCTTTCTC +
Preference number: 1 (lower is better)
Translates to: APGQGLLESALLGPA*APDADVSSLPPSFL
Trigger: GAGAAAGGAGGGAGGGAGACTGCTCACGTCTGCGTCTGGGGCCCACGCTGGCCCGAGCAGAGCAGACTCCAGTAACCCTTGCCCTGGAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR GCA 90 bp GGCTGGCATCCTAATCCTCAGGCAGGGCCTACCCCCAGGGCAAACTaGCTGCTCCAGCTGGCCAGGCCACACCCAGTATCCCTCCAGGAA +
Preference number: 1 (lower is better)
Translates to: GWHPNPQAGPTPRAN*LLQLARPHPVSLQE
Trigger: TTCCTGGAGGGATACTGGGTGTGGCCTGGCCAGCTGGAGCAGGCAGTTTGCCCTGGGGGTAGGCCCTGCCTGAGGATTAGGATGCCAGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CCA 90 bp GCAGACCTCTGGTGTCTCGGAGGCAGCAGACGGGCACAGGCAGCCTaGTTGGTCCCTGCCACAGCTACAGTAGCAGTAGTGTCCCTGGGG +
Preference number: 1 (lower is better)
Translates to: ADLWCLGGSRRAQAA*LVPATATVAVVSLG
Trigger: CCCCAGGGACACTACTGCTACTGTAGCTGTGGCAGGGACCAACCAGGCTGCCTGTGCCCGTCTGCTGCCTCCGAGACACCAGAGGTCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR TCA 90 bp TGGAGTCTGCTCTGCTCGGGCCAGCGTGGGCCCCAGACGCAGACGTaGGCAGTCTCCCTCCCTCCTTTCTCAGGGACACCACCTCTATGT +
Preference number: 1 (lower is better)
Translates to: WSLLCSGQRGPQTQT*AVSLPPFSGTPPLC
Trigger: ACATAGAGGTGGTGTCCCTGAGAAAGGAGGGAGGGAGACTGCTCACGTCTGCGTCTGGGGCCCACGCTGGCCCGAGCAGAGCAGACTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR GCA 90 bp GCGCAGGCTCTGGTACAGGTAGGCCGAGGTGAAGAGAGCATTGACTaGCAAACTCACAGCCAGGAGGCCCCGGACCAGGGAGGGACTGAC +
Preference number: 1 (lower is better)
Translates to: AQALVQVGRGEESID*QTHSQEAPDQGGTD
Trigger: GTCAGTCCCTCCCTGGTCCGGGGCCTCCTGGCTGTGAGTTTGGCAGTCAATGCTCTCTTCACCTCGGCCTACCTGTACCAGAGCCTGCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR GCA 90 bp GAGGCAGGAGATCATGGGTTTATTGTTCAGTCCCAGGCTCCCTGCTaGCCAGCCCTGCCTGGAGCCAACAGTTGGGGCGAGATGGGCGGC +
Preference number: 1 (lower is better)
Translates to: EAGDHGFIVQSQAPC*PALPGANSWGEMGG
Trigger: GCCGCCCATCTCGCCCCAACTGTTGGCTCCAGGCAGGGCTGGGCAGCAGGGAGCCTGGGACTGAACAATAAACCCATGATCTCCTGCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR GCA 90 bp CCTGCAGTGCCCTCAGCAGGCAGTGGCTGGACACGTAGGCACCAATaGCGATGGCCTGGAGCCACAGGTCAAGGGGGACACAGATTGGGA +
Preference number: 1 (lower is better)
Translates to: PAVPSAGSGWTRRHQ*RWPGATGQGGHRLG
Trigger: TCCCAATCTGTGTCCCCCTTGACCTGTGGCTCCAGGCCATCGGCATTGGTGCCTACGTGTCCAGCCACTGCCTGCTGAGGGCACTGCAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR TCA 90 bp CCAAGGACGACCCTTGCTACTCCAGGGAAGGACCCTGAGGGACCATaGGTCTCAGGAAAGAGGGACCAGGAGGTTCGGGGGATGAGCGGG +
Preference number: 1 (lower is better)
Translates to: PRTTLATPGKDPEGP*VSGKRDQEVRGMSG
Trigger: CCCGCTCATCCCCCGAACCTCCTGGTCCCTCTTTCCTGAGACTCATGGTCCCTCAGGGTCCTTCCCTGGAGTAGCAAGGGTCGTCCTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR TCA 90 bp GACCTTCCACACCCTCACCCAGAGCAAGCTGAGCCCTGCGATGCCTaGAGCAACGCCTGCTCTCCTGACACTGGCAGGCCACCACATGGA +
Preference number: 1 (lower is better)
Translates to: DLPHPHPEQAEPCDA*SNACSPDTGRPPHG
Trigger: TCCATGTGGTGGCCTGCCAGTGTCAGGAGAGCAGGCGTTGCTTCAGGCATCGCAGGGCTCAGCTTGCTCTGGGTGAGGGTGTGGAAGGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR GCA 90 bp TCCTGGGTGCGCAGGGTGCCAGGCTGCCCTGCTGGGAGGAGCCATTaGTTCTCTTTAGGTGTTTCCTCAGGGCTGGAGACAAGGATGCTG +
Preference number: 1 (lower is better)
Translates to: SWVRRVPGCPAGRSH*FSLGVSSGLETRML
Trigger: CAGCATCCTTGTCTCCAGCCCTGAGGAAACACCTAAAGAGAAGCAATGGCTCCTCCCAGCAGGGCAGCCTGGCACCCTGCGCACCCAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR GCA 90 bp CAACACCACCAGTGTGAGTCAACCGGGAGCCACCAGAGGGCAGCATaGCAGGTGGGCGGAGCATGGGCCTATGGTCCAGATGGATCCTTA +
Preference number: 1 (lower is better)
Translates to: QHHQCESTGSHQRAA*QVGGAWAYGPDGSL
Trigger: TAAGGATCCATCTGGACCATAGGCCCATGCTCCGCCCACCTGGCATGCTGCCCTCTGGTGGCTCCCGGTTGACTCACACTGGTGGTGTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR TCA 90 bp TTGCAGTCTGTTGGGTGGACAGCAGGTATCCTGAGGTCAGGGACTTaGCCCAGGAGGTCAAGGCAGAGACAGAGCCCCTCGGGGAGGGAT +
Preference number: 1 (lower is better)
Translates to: LQSVGWTAGILRSGT*PRRSRQRQSPSGRD
Trigger: ATCCCTCCCCGAGGGGCTCTGTCTCTGCCTTGACCTCCTGGGTCAAGTCCCTGACCTCAGGATACCTGCTGTCCACCCAACAGACTGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR TCA 90 bp AGGGACCATGAGTCTCAGGAAAGAGGGACCAGGAGGTTCGGGGGATaGGCGGGCTGCTCTAGTCCTAGCTCACCATGCTCAGAGGCCATG +
Preference number: 1 (lower is better)
Translates to: RDHESQERGTRRFGG*AGCSSPSSPCSEAM
Trigger: CATGGCCTCTGAGCATGGTGAGCTAGGACTAGAGCAGCCCGCTCATCCCCCGAACCTCCTGGTCCCTCTTTCCTGAGACTCATGGTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR GCA 90 bp GCTCAGACTCTCCCTAGTGGGGCCAACCTAGGCATCCCCAGTGTCTaGTCTAAGCACAGGAGCCCTGGGCTACCCATGGCTACCGAACAT +
Preference number: 1 (lower is better)
Translates to: AQTLPSGANLGIPSV*SKHRSPGLPMATEH
Trigger: ATGTTCGGTAGCCATGGGTAGCCCAGGGCTCCTGTGCTTAGAGCAGACACTGGGGATGCCTAGGTTGGCCCCACTAGGGAGAGTCTGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR GCA 90 bp TGCATCTCTCAGGGGCTTTCTTCATCTTGGTTCTTGGTGGGGCTCTaGAGCAGACCTCTGGTGTCTCGGAGGCAGCAGACGGGCACAGGC +
Preference number: 1 (lower is better)
Translates to: CISQGLSSSWFLVGL*SRPLVSRRQQTGTG
Trigger: GCCTGTGCCCGTCTGCTGCCTCCGAGACACCAGAGGTCTGCTGCAGAGCCCCACCAAGAACCAAGATGAAGAAAGCCCCTGAGAGATGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR GCA 90 bp GACCATTGGAACTTGCTGACCATAAGGAACTGCGGGGCTTTCTACTaGCCACCCGAGAGGAGCCTGCCTCACAGACACAGCCAGGGCAGG +
Preference number: 1 (lower is better)
Translates to: DHWNLLTIRNCGAFY*PPERSLPHRHSQGR
Trigger: CCTGCCCTGGCTGTGTCTGTGAGGCAGGCTCCTCTCGGGTGGGCAGTAGAAAGCCCCGCAGTTCCTTATGGTCAGCAAGTTCCAATGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 90 bp ATGGCCTGGAGCCACAGGTCAAGGGGGACACAGATTGGGACAGGATaGAGGAGAGGAGAGCAGGGCTCAGGAGTAAGTAAGGGAGGGTCC +
Preference number: 1 (lower is better)
Translates to: MAWSHRSRGTQIGTG*RRGEQGSGVSKGGS
Trigger: GGACCCTCCCTTACTTACTCCTGAGCCCTGCTCTCCTCTCCTCCATCCTGTCCCAATCTGTGTCCCCCTTGACCTGTGGCTCCAGGCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CCA 90 bp GCAGTCTCCCTCCCTCCTTTCTCAGGGACACCACCTCTATGTACCTaGGATGATCCCACTCTGAACGGGGACGGCCCAGTGGTTGTCCCA +
Preference number: 1 (lower is better)
Translates to: AVSLPPFSGTPPLCT*DDPTLNGDGPVVVP
Trigger: TGGGACAACCACTGGGCCGTCCCCGTTCAGAGTGGGATCATCCCAGGTACATAGAGGTGGTGTCCCTGAGAAAGGAGGGAGGGAGACTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR TCA 90 bp GCAGTCTACACCCTCGCCTGTGGACTAGGAGCCAGGGGGAAGCAATaGCAAGACTGGGTGCCTAGAGCTGGCAGGAAGCTATGGGGCTAT +
Preference number: 1 (lower is better)
Translates to: AVYTLACGLGARGKQ*QDWVPRAGRKLWGY
Trigger: ATAGCCCCATAGCTTCCTGCCAGCTCTAGGCACCCAGTCTTGTCATTGCTTCCCCCTGGCTCCTAGTCCACAGGCGAGGGTGTAGACTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR TCA 90 bp GGCCCAGTGGTTGTCCCAGTCAATGAGCCACAACCCAAGGGTGCCTaGGTTTCCTCAGCTTCTGCCAGCGACCCCAGAACACGCTTTCTC +
Preference number: 1 (lower is better)
Translates to: GPVVVPVNEPQPKGA*VSSASASDPRTRFL
Trigger: GAGAAAGCGTGTTCTGGGGTCGCTGGCAGAAGCTGAGGAAACTCAGGCACCCTTGGGTTGTGGCTCATTGACTGGGACAACCACTGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 90 bp GCTCCATGTGCATCTCTCAGGGGCTTTCTTCATCTTGGTTCTTGGTaGGGCTCTGCAGCAGACCTCTGGTGTCTCGGAGGCAGCAGACGG +
Preference number: 1 (lower is better)
Translates to: APCASLRGFLHLGSW*GSAADLWCLGGSRR
Trigger: CCGTCTGCTGCCTCCGAGACACCAGAGGTCTGCTGCAGAGCCCCACCAAGAACCAAGATGAAGAAAGCCCCTGAGAGATGCACATGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR TCA 90 bp TGCAGGGAGCCGGGCCCTCTGGAGGGAACAGGTGTGAGGATGAAGTaGTCCAGGCTCCATGTGCATCTCTCAGGGGCTTTCTTCATCTTG +
Preference number: 1 (lower is better)
Translates to: CREPGPLEGTGVRMK*SRLHVHLSGAFFIL
Trigger: CAAGATGAAGAAAGCCCCTGAGAGATGCACATGGAGCCTGGATCACTTCATCCTCACACCTGTTCCCTCCAGAGGGCCCGGCTCCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR TCA 90 bp CACACTCATACACACACAGGCTCACACGCACACAGGGCCAAGGCCTaGCCCCTACAGGCACATGTAGCCCCCACACTATCGAAACAGCCA +
Preference number: 1 (lower is better)
Translates to: HTHTHTGSHAHRAKA*PLQAHVAPTLSKQP
Trigger: TGGCTGTTTCGATAGTGTGGGGGCTACATGTGCCTGTAGGGGTCAGGCCTTGGCCCTGTGTGCGTGTGAGCCTGTGTGTGTATGAGTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR GCA 90 bp TCCTCCTACCTGGCAGACCATTGGAACTTGCTGACCATAAGGAACTaGGGGGCTTTCTACTGCCCACCCGAGAGGAGCCTGCCTCACAGA +
Preference number: 1 (lower is better)
Translates to: SSYLADHWNLLTIRN*GAFYCPPERSLPHR
Trigger: TCTGTGAGGCAGGCTCCTCTCGGGTGGGCAGTAGAAAGCCCCGCAGTTCCTTATGGTCAGCAAGTTCCAATGGTCTGCCAGGTAGGAGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 90 bp GGGCTACCCATGGCTACCGAACATCTGACGTGGGGCTGGGGCAGCTaGGGAGATGAACCAGAAGAACCACCACAGGGAGTAGCTTTATCA +
Preference number: 1 (lower is better)
Translates to: GLPMATEHLTWGWGS*GDEPEEPPQGVALS
Trigger: TGATAAAGCTACTCCCTGTGGTGGTTCTTCTGGTTCATCTCCCCAGCTGCCCCAGCCCCACGTCAGATGTTCGGTAGCCATGGGTAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CCA 90 bp CAGGCTCCATGTGCATCTCTCAGGGGCTTTCTTCATCTTGGTTCTTaGTGGGGCTCTGCAGCAGACCTCTGGTGTCTCGGAGGCAGCAGA +
Preference number: 1 (lower is better)
Translates to: QAPCASLRGFLHLGS*WGSAADLWCLGGSR
Trigger: TCTGCTGCCTCCGAGACACCAGAGGTCTGCTGCAGAGCCCCACCAAGAACCAAGATGAAGAAAGCCCCTGAGAGATGCACATGGAGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CCA 90 bp AGTGATCCAGGCTCCATGTGCATCTCTCAGGGGCTTTCTTCATCTTaGTTCTTGGTGGGGCTCTGCAGCAGACCTCTGGTGTCTCGGAGG +
Preference number: 1 (lower is better)
Translates to: SDPGSMCISQGLSSS*FLVGLCSRPLVSRR
Trigger: CCTCCGAGACACCAGAGGTCTGCTGCAGAGCCCCACCAAGAACCAAGATGAAGAAAGCCCCTGAGAGATGCACATGGAGCCTGGATCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR GCA 90 bp CTCAGTTTAGGGAGGCTGAGGCCAGCCTGGGCTATAAGGAGACCTTaGTTAAACCAACATGAGCAAGGGTGGAACGAGGCCCAGGTCTTC +
Preference number: 1 (lower is better)
Translates to: LSLGRLRPAWAIRRP*LNQHEQGWNEAQVF
Trigger: GAAGACCTGGGCCTCGTTCCACCCTTGCTCATGTTGGTTTAAGCAAGGTCTCCTTATAGCCCAGGCTGGCCTCAGCCTCCCTAAACTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR GCA 90 bp GGGAGACAAGGGGAGCTCTGGTGTTCTCAGGGTAACAGAGCTACTTaGTGGGAAAGTCACAAACAGGTGTGTGAGGCAGGAGATCATGGG +
Preference number: 1 (lower is better)
Translates to: GRQGELWCSQGNRAT*WESHKQVCEAGDHG
Trigger: CCCATGATCTCCTGCCTCACACACCTGTTTGTGACTTTCCCAGCAAGTAGCTCTGTTACCCTGAGAACACCAGAGCTCCCCTTGTCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CCA 90 bp GCACCTCAGAGCCTTATAAGAGGACCCAGCACTTCCCACTCCGGATaGCTGAGACAACAGGGATTTGTCAAAAACCCATCAGTTAGCAGG +
Preference number: 1 (lower is better)
Translates to: APQSLIRGPSTSHSG*LRQQGFVKNPSVSR
Trigger: CCTGCTAACTGATGGGTTTTTGACAAATCCCTGTTGTCTCAGCCATCCGGAGTGGGAAGTGCTGGGTCCTCTTATAAGGCTCTGAGGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 90 bp TTCTTCCCATGGCCATTACCTTCACTGCCAGTGTGTCACCTCTCGTaGTCCTCAAATCCACTGAGGCCAGCACCTCAGAGCCTTATAAGA +
Preference number: 1 (lower is better)
Translates to: FFPWPLPSLPVCHLS*SSNPLRPAPQSLIR
Trigger: TCTTATAAGGCTCTGAGGTGCTGGCCTCAGTGGATTTGAGGACCACGAGAGGTGACACACTGGCAGTGAAGGTAATGGCCATGGGAAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 90 bp AGACAAGGGGAGCTCTGGTGTTCTCAGGGTAACAGAGCTACTTGCTaGGAAAGTCACAAACAGGTGTGTGAGGCAGGAGATCATGGGTTT +
Preference number: 1 (lower is better)
Translates to: RQGELWCSQGNRATC*ESHKQVCEAGDHGF
Trigger: AAACCCATGATCTCCTGCCTCACACACCTGTTTGTGACTTTCCCAGCAAGTAGCTCTGTTACCCTGAGAACACCAGAGCTCCCCTTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CCA 90 bp AATAACATCGTGTTTATATATGAATCAAAACATAAAAGGCCCTCCTaGGTGCGCAGGGTGCCAGGCTGCCCTGCTGGGAGGAGCCATTGC +
Preference number: 1 (lower is better)
Translates to: NNIVFIYESKHKRPS*VRRVPGCPAGRSHC
Trigger: GCAATGGCTCCTCCCAGCAGGGCAGCCTGGCACCCTGCGCACCCAGGAGGGCCTTTTATGTTTTGATTCATATATAAACACGATGTTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR GCA 90 bp ACTCCCACCAACAGGCAGGGTGACAGGCTCAGCAGGGATTCTGGCTaGTCAGAGCTGGCTCTGTGTATCATAAATAATTTAAACACACAC +
Preference number: 1 (lower is better)
Translates to: TPTNRQGDRLSRDSG*SELALCIINNLNTH
Trigger: GTGTGTGTTTAAATTATTTATGATACACAGAGCCAGCTCTGAGCAGCCAGAATCCCTGCTGAGCCTGTCACCCTGCCTGTTGGTGGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 90 bp AGCAGGACCCAGGAGGCATTTATTGAAAACACAGCATTCAAAACATaGCAGCTATGGCCAGTGGTGGTTACAGTTGTTAGGGTCGCTGGA +
Preference number: 1 (lower is better)
Translates to: SRTQEAFIENTAFKT*QLWPVVVTVVRVAG
Trigger: TCCAGCGACCCTAACAACTGTAACCACCACTGGCCATAGCTGCCATGTTTTGAATGCTGTGTTTTCAATAAATGCCTCCTGGGTCCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR GCA 90 bp GAGTTGGTGGGAAGCTACCCTGCTCAAGTGTCAGAGATTAAAGGGTaGATAGAAACCAGGATGATGGTCAGTCATCCTTCCTTCATCCTA +
Preference number: 1 (lower is better)
Translates to: ELVGSYPAQVSEIKG*IETRMMVSHPSFIL
Trigger: TAGGATGAAGGAAGGATGACTGACCATCATCCTGGTTTCTATGCACCCTTTAATCTCTGACACTTGAGCAGGGTAGCTTCCCACCAACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CCA 90 bp CAGGAGGCATTTATTGAAAACACAGCATTCAAAACATGGCAGCTATaGCCAGTGGTGGTTACAGTTGTTAGGGTCGCTGGACAATCACAA +
Preference number: 1 (lower is better)
Translates to: QEAFIENTAFKTWQL*PVVVTVVRVAGQSQ
Trigger: TTGTGATTGTCCAGCGACCCTAACAACTGTAACCACCACTGGCCATAGCTGCCATGTTTTGAATGCTGTGTTTTCAATAAATGCCTCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 90 bp AGCAACAACAGGGTTACCAAGATATCAATGTTACAAAGGAAGAAATaGGAGTTGGTGGGAAGCTACCCTGCTCAAGTGTCAGAGATTAAA +
Preference number: 1 (lower is better)
Translates to: SNNRVTKISMLQRKK*ELVGSYPAQVSEIK
Trigger: TTTAATCTCTGACACTTGAGCAGGGTAGCTTCCCACCAACTCCCATTTCTTCCTTTGTAACATTGATATCTTGGTAACCCTGTTGTTGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CCA 90 bp TTATTGAAAACACAGCATTCAAAACATGGCAGCTATGGCCAGTGGTaGTTACAGTTGTTAGGGTCGCTGGACAATCACAATCTACTACAT +
Preference number: 1 (lower is better)
Translates to: LLKTQHSKHGSYGQW*LQLLGSLDNHNLLH
Trigger: ATGTAGTAGATTGTGATTGTCCAGCGACCCTAACAACTGTAACCACCACTGGCCATAGCTGCCATGTTTTGAATGCTGTGTTTTCAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 90 bp CATTTATTGAAAACACAGCATTCAAAACATGGCAGCTATGGCCAGTaGTGGTTACAGTTGTTAGGGTCGCTGGACAATCACAATCTACTA +
Preference number: 1 (lower is better)
Translates to: HLLKTQHSKHGSYGQ*WLQLLGSLDNHNLL
Trigger: TAGTAGATTGTGATTGTCCAGCGACCCTAACAACTGTAACCACCACTGGCCATAGCTGCCATGTTTTGAATGCTGTGTTTTCAATAAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CCA 90 bp GGCCTGCTCCAGGGCAAGGGTTACTGGAGTCTGCTCTGCTCGGGCCAGCGTGGGGGGGAGCACCGAGACTaGGGGAGCGGGATGGCTAAG +
Preference number: 2 (lower is better)
Translates to: GLLQGKGYWSLLCSGQRGGEHRD*GSGMAK
Trigger: CTTAGCCATCCCGCTCCCCCAGTCTCGGTGCTCCCC...CCCACGCTGGCCCGAGCAGAGCAGACTCCAGTAACCCTTGCCCTGGAGCAGGCC
68% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR TCA 90 bp GGGGCTCTGCAGCAGACCTCTGGTGTCTCGGAGGCAGCAGACGGGCACAGGCAGCTGAGGTCAGGGACTTaGCCCAGGAGGTCAAGGCAG +
Preference number: 2 (lower is better)
Translates to: GALQQTSGVSEAADGHRQLRSGT*PRRSRQ
Trigger: CTGCCTTGACCTCCTGGGTCAAGTCCCTGACCTCAG...CTGCCTGTGCCCGTCTGCTGCCTCCGAGACACCAGAGGTCTGCTGCAGAGCCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR TCA 90 bp TTACTGGAGTCTGCTCTGCTCGGGCCAGCGTGGGCCCCAGACGCAGACGTGAGCAAGCGGTGGCAGTGGTaGGCCAGTACAGGCCACCTG +
Preference number: 2 (lower is better)
Translates to: LLESALLGPAWAPDADVSKRWQW*ASTGHL
Trigger: CAGGTGGCCTGTACTGGCTCACCACTGCCACCGCTT...GCTCACGTCTGCGTCTGGGGCCCACGCTGGCCCGAGCAGAGCAGACTCCAGTAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR TCA 90 bp TGGGCGCAGACAGAGGGCACGGCGGGCGGGATGGACAGGCTGCCTGGGGATGGAGAAGCTATGGGGCTATaGCAGGGTCTCAGGCCAGAA +
Preference number: 2 (lower is better)
Translates to: WAQTEGTAGGMDRLPGDGEAMGL*QGLRPE
Trigger: TTCTGGCCTGAGACCCTGTCATAGCCCCATAGCTTC...TCCATCCCCAGGCAGCCTGTCCATCCCGCCCGCCGTGCCCTCTGTCTGCGCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR GCA 90 bp CGAGATGGGCGGCTGCTGCCTGATGCAGGGAGCCGGGCCCTCTGGAGGGAACAGCTCCATCCAGTGTCCTaGCTTCCTTCTCACCCAGGG +
Preference number: 2 (lower is better)
Translates to: RDGRLLPDAGSRALWREQLHPVS*LPSHPG
Trigger: CCCTGGGTGAGAAGGAAGGCAGGACACTGGATGGAG...CTGTTCCCTCCAGAGGGCCCGGCTCCCTGCATCAGGCAGCAGCCGCCCATCTCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR-3UTR GCA 90 bp AGGTCAAGGCAGAGACAGAGCCCCTCGGGGAGGGATCTCAGCGCCAGTGTCGGAGCATGCACCTGGCACTaGCCTCGGGAAGGGCACTCG +
Preference number: 2 (lower is better)
Translates to: RSRQRQSPSGRDLSASVGACTWH*PREGHS
Trigger: CGAGTGCCCTTCCCGAGGGCAGTGCCAGGTGCATGC...TCCGACACTGGCGCTGAGATCCCTCCCCGAGGGGCTCTGTCTCTGCCTTGACCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR GCA 90 bp TGGGCGCAGACAGAGGGCACGGCGGGCGGGATGGACAGGCTGCCTGGGGATGGAAGCAGGGATTCTGGCTaGTCAGAGCTGGCTCTGTGT +
Preference number: 2 (lower is better)
Translates to: WAQTEGTAGGMDRLPGDGSRDSG*SELALC
Trigger: ACACAGAGCCAGCTCTGAGCAGCCAGAATCCCTGCT...TCCATCCCCAGGCAGCCTGTCCATCCCGCCCGCCGTGCCCTCTGTCTGCGCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CCA 90 bp TGGGCGCAGACAGAGGGCACGGCGGGCGGGATGGACAGGCTGCCTGGGGATGGACATGCTCAGAGGCCATaGCTTGTAAACTGGCCGGTG +
Preference number: 2 (lower is better)
Translates to: WAQTEGTAGGMDRLPGDGHAQRP*LVNWPV
Trigger: CACCGGCCAGTTTACAAGCCATGGCCTCTGAGCATG...TCCATCCCCAGGCAGCCTGTCCATCCCGCCCGCCGTGCCCTCTGTCTGCGCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CCA 90 bp TACTACATGACACGGGCTTGCACTGGGCGCAGACAGAGGGCACGGCGGGCGGGATTCCTCTGCCCTCCCTaGGCTCCAGTGCAGAGGGTG +
Preference number: 2 (lower is better)
Translates to: YYMTRACTGRRQRARRAGFLCPP*APVQRV
Trigger: CACCCTCTGCACTGGAGCCCAGGGAGGGCAGAGGAA...TCCCGCCCGCCGTGCCCTCTGTCTGCGCCCAGTGCAAGCCCGTGTCATGTAGTA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CCA 90 bp TGGGCGCAGACAGAGGGCACGGCGGGCGGGATGGACAGGCTGCCTGGGGATGGACGTAGGCCAGTTCCTTaGAGGAAAGAGACAGGAAGG +
Preference number: 2 (lower is better)
Translates to: WAQTEGTAGGMDRLPGDGRRPVP*RKETGR
Trigger: CCTTCCTGTCTCTTTCCTCCAAGGAACTGGCCTACG...TCCATCCCCAGGCAGCCTGTCCATCCCGCCCGCCGTGCCCTCTGTCTGCGCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR GCA 90 bp TCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGTGGCTGGACACGGGCATCCCCAGTGTCTaGTCTAAGCACAGGAGCCCT +
Preference number: 2 (lower is better)
Translates to: SSVLQQACSALSRQWLDTGIPSV*SKHRSP
Trigger: AGGGCTCCTGTGCTTAGAGCAGACACTGGGGATGCC...CGTGTCCAGCCACTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR-3UTR GCA 90 bp TACTACATGACACGGGCTTGCACTGGGCGCAGACAGAGGGCACGGCGGGCGGGAGCTAAGACAAGTTGTTaGCAGCTTCAGGGGGCGGGG +
Preference number: 2 (lower is better)
Translates to: YYMTRACTGRRQRARRAGAKTSC*QLQGAG
Trigger: CCCCGCCCCCTGAAGCTGGCAACAACTTGTCTTAGC...TCCCGCCCGCCGTGCCCTCTGTCTGCGCCCAGTGCAAGCCCGTGTCATGTAGTA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR GCA 90 bp TTCCTCTGCCCTCCCTGGGCTCCAGTGCAGAGGGTGAAAGAGCCGCACTTAGAGCACCAGAGGGCAGCATaGCAGGTGGGCGGAGCATGG +
Preference number: 2 (lower is better)
Translates to: FLCPPWAPVQRVKEPHLEHQRAA*QVGGAW
Trigger: CCATGCTCCGCCCACCTGGCATGCTGCCCTCTGGTG...CTCTAAGTGCGGCTCTTTCACCCTCTGCACTGGAGCCCAGGGAGGGCAGAGGAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CCA 90 bp CAATGTGACTACATGGGCCTAGGTCAGGCGGCCTGTGTCTGCCTGCACCCAGCACCCCAGAAGGGGGCTTaGGACTGGCTCTCCCACCCT +
Preference number: 2 (lower is better)
Translates to: QCDYMGLGQAACVCLHPAPQKGA*DWLSHP
Trigger: AGGGTGGGAGAGCCAGTCCCAAGCCCCCTTCTGGGG...TGCTGGGTGCAGGCAGACACAGGCCGCCTGACCTAGGCCCATGTAGTCACATTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR-3UTR TCA 90 bp TGTAGACCAAAGAGGTGTCACCTCCAAGCTGAACCCTTTGTGGCAGCTGGACTCTGGGCGGCTGCTGCCTaGTGCAGGGAGCCGGGCCCT +
Preference number: 2 (lower is better)
Translates to: CRPKRCHLQAEPFVAAGLWAAAA*CREPGP
Trigger: AGGGCCCGGCTCCCTGCATCAGGCAGCAGCCGCCCA...GAGTCCAGCTGCCACAAAGGGTTCAGCTTGGAGGTGACACCTCTTTGGTCTACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR GCA 90 bp AAAAGCACCCAGAGCTTGAGAGACCACCTCCCAGCAGGGAGGGCTGAAGGCATCCCAGGGCAAACTGCCTaGTCCAGCTGGCCAGGCCAC +
Preference number: 2 (lower is better)
Translates to: KSTQSLRDHLPAGRAEGIPGQTA*SSWPGH
Trigger: GTGGCCTGGCCAGCTGGAGCAGGCAGTTTGCCCTGG...GATGCCTTCAGCCCTCCCTGCTGGGAGGTGGTCTCTCAAGCTCTGGGTGCTTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR-3UTR GCA 90 bp GGGAGCCACCAGAGGGCAGCATGCCAGGTGGGCGGAGCATGGGCCTATGGTCCACTGACCATAAGGAACTaGGGGGCTTTCTACTGCCCA +
Preference number: 2 (lower is better)
Translates to: GSHQRAACQVGGAWAYGPLTIRN*GAFYCP
Trigger: TGGGCAGTAGAAAGCCCCGCAGTTCCTTATGGTCAG...TGGACCATAGGCCCATGCTCCGCCCACCTGGCATGCTGCCCTCTGGTGGCTCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CCA 90 bp GGCCTGCTCCAGGGCAAGGGTTACTGGAGTCTGCTCTGCTCGGGCCAGCGTGGGAGGGTGGGAGTGGGATaGCTAAGACAAGTTGTTGCC +
Preference number: 2 (lower is better)
Translates to: GLLQGKGYWSLLCSGQRGRVGVG*LRQVVA
Trigger: GGCAACAACTTGTCTTAGCCATCCCACTCCCACCCT...CCCACGCTGGCCCGAGCAGAGCAGACTCCAGTAACCCTTGCCCTGGAGCAGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CCA 90 bp CTAGAGCTGGCAGGAAGCTATGGGGCTATGACAGGGTCTCAGGCCAGAAGCGGTCCAGTACAGGCCACCTaGGGAGCACCGAGACTGGGG +
Preference number: 2 (lower is better)
Translates to: LELAGSYGAMTGSQARSGPVQAT*GAPRLG
Trigger: CCCCAGTCTCGGTGCTCCCCAGGTGGCCTGTACTGG...ACCGCTTCTGGCCTGAGACCCTGTCATAGCCCCATAGCTTCCTGCCAGCTCTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CCA 90 bp CAGGAAGGCGTTCCTCGTCCTCTCAGACAGCTGTACCCCACAAGGTCAGCAGCAGGGGGAAGCTGTGCCTaGGAGGAGGGTGAGGCTGAG +
Preference number: 2 (lower is better)
Translates to: QEGVPRPLRQLYPTRSAAGGSCA*EEGEAE
Trigger: CTCAGCCTCACCCTCCTCCCAGGCACAGCTTCCCCC...TGCTGCTGACCTTGTGGGGTACAGCTGTCTGAGAGGACGAGGAACGCCTTCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CAA 90 bp CTCCTGGGTGCGCAGGGTGCCAGGCTGCCCTGCTGGGAGGAGCCATaGCTTCTCTTTAGGTGTTTCCTCAGGGCTGGAGACAAGGATGCT +
Preference number: 2 (lower is better)
Translates to: LLGAQGARLPCWEEP*LLFRCFLRAGDKDA
Trigger: AGCATCCTTGTCTCCAGCCCTGAGGAAACACCTAAAGAGAAGCAATGGCTCCTCCCAGCAGGGCAGCCTGGCACCCTGCGCACCCAGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CAA 90 bp TGCCTCACAGACACAGCCAGGGCAGGCTGGACCCAAGGACGACCCTaGCTACTCCAGGGAAGGACCCTGAGGGACCATGAGTCTCAGGAA +
Preference number: 2 (lower is better)
Translates to: CLTDTARAGWTQGRP*LLQGRTLRDHESQE
Trigger: TTCCTGAGACTCATGGTCCCTCAGGGTCCTTCCCTGGAGTAGCAAGGGTCGTCCTTGGGTCCAGCCTGCCCTGGCTGTGTCTGTGAGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR TCA 90 bp CCCTGCCACAGCTACAGTAGCAGTAGTGTCCCTGGGGCCAGGCAAGCCTGTCAGGGGCAGCTGGGGAGATaGACCAGAAGAACCACCACA +
Preference number: 2 (lower is better)
Translates to: PCHSYSSSSVPGARQACQGQLGR*TRRTTT
Trigger: TGTGGTGGTTCTTCTGGTTCATCTCCCCAGCTGCCC...CTGACAGGCTTGCCTGGCCCCAGGGACACTACTGCTACTGTAGCTGTGGCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR-3UTR GCA 90 bp TTGGTCCCTGCCACAGCTACAGTAGCAGTAGTGTCCCTGGGGCCAGGCAAGCCTCGGCCTGTGTCTGCCTaGACCCAGCAACAACAGGGT +
Preference number: 2 (lower is better)
Translates to: LVPATATVAVVSLGPGKPRPVSA*TQQQQG
Trigger: ACCCTGTTGTTGCTGGGTGCAGGCAGACACAGGCCG...AGGCTTGCCTGGCCCCAGGGACACTACTGCTACTGTAGCTGTGGCAGGGACCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR-3UTR GCA 90 bp CAGGATGTGCTCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGTGTTCTTGGTGGGGCTCTaGAGCAGACCTCTGGTGTCT +
Preference number: 2 (lower is better)
Translates to: QDVLQRAPASLQCPQQAVFLVGL*SRPLVS
Trigger: AGACACCAGAGGTCTGCTGCAGAGCCCCACCAAGAA...CACTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGAGCACATCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR GCA 90 bp CTTGGAGGAAAGAGACAGGAAGGCGTTCCTCGTCCTCTCAGACAGCTGTACCCCCATGGGGCCAGCAGCTaGCCCCAGAGAAACCGAGGG +
Preference number: 2 (lower is better)
Translates to: LGGKRQEGVPRPLRQLYPHGASS*PQRNRG
Trigger: CCCTCGGTTTCTCTGGGGGCAGCTGCTGGCCCCATG...GGGGTACAGCTGTCTGAGAGGACGAGGAACGCCTTCCTGTCTCTTTCCTCCAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CCA 90 bp CCACCAGAGGGCAGCATGCCAGGTGGGCGGAGCATGGGCCTATGGTCCAGATGGTCACCAACAGTCTGTTaGGTCCTGTTTGTGCGGAGC +
Preference number: 2 (lower is better)
Translates to: PPEGSMPGGRSMGLWSRWSPTVC*VLFVRS
Trigger: GCTCCGCACAAACAGGACCCAACAGACTGTTGGTGA...CCATCTGGACCATAGGCCCATGCTCCGCCCACCTGGCATGCTGCCCTCTGGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CCA 90 bp GTGACACTCACTCGTGTGAAATCTTCCTCTGCCCTCCCTGGGCTCCAGTGCAGAGAGGCTGAGACCACATaGGGCCAGCAGCTGCCCCCA +
Preference number: 2 (lower is better)
Translates to: VTLTRVKSSSALPGLQCREAETT*GQQLPP
Trigger: TGGGGGCAGCTGCTGGCCCCATGTGGTCTCAGCCTC...TCTGCACTGGAGCCCAGGGAGGGCAGAGGAAGATTTCACACGAGTGAGTGTCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CCA 90 bp TACTACATGACACGGGCTTGCACTGGGCGCAGACAGAGGGCACGGCGGGCGGGAGTGTGTCACCTCTCGTaGTCCTCAAATCCACTGAGG +
Preference number: 2 (lower is better)
Translates to: YYMTRACTGRRQRARRAGVCHLS*SSNPLR
Trigger: CCTCAGTGGATTTGAGGACCACGAGAGGTGACACAC...TCCCGCCCGCCGTGCCCTCTGTCTGCGCCCAGTGCAAGCCCGTGTCATGTAGTA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CAA 90 bp TTTGCAGTCTGTTGGGTGGACAGCAGGTATCCTGAGGTCAGGGACTaGACCCAGGAGGTCAAGGCAGAGACAGAGCCCCTCGGGGAGGGA +
Preference number: 2 (lower is better)
Translates to: FAVCWVDSRYPEVRD*TQEVKAETEPLGEG
Trigger: TCCCTCCCCGAGGGGCTCTGTCTCTGCCTTGACCTCCTGGGTCAAGTCCCTGACCTCAGGATACCTGCTGTCCACCCAACAGACTGCAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR TCA 90 bp CTTGGAGGAAAGAGACAGGAAGGCGTTCCTCGTCCTCTCAGACAGCTGTACCCCCAACGCCTGCTCTCCTaGCACTGGCAGGCCACCACA +
Preference number: 2 (lower is better)
Translates to: LGGKRQEGVPRPLRQLYPQRLLS*HWQATT
Trigger: TGTGGTGGCCTGCCAGTGTCAGGAGAGCAGGCGTTG...GGGGTACAGCTGTCTGAGAGGACGAGGAACGCCTTCCTGTCTCTTTCCTCCAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR GCA 90 bp GCAATCCAGGATAGCATTGAGAGCTCCCGGGACAGGAGTGGAGAGGTAAGGTCAGCATGCACCTGGCACTaGCCTCGGGAAGGGCACTCG +
Preference number: 2 (lower is better)
Translates to: AIQDSIESSRDRSGEVRSACTWH*PREGHS
Trigger: CGAGTGCCCTTCCCGAGGGCAGTGCCAGGTGCATGC...TGACCTTACCTCTCCACTCCTGTCCCGGGAGCTCTCAATGCTATCCTGGATTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR GCA 90 bp GTGACACTCACTCGTGTGAAATCTTCCTCTGCCCTCCCTGGGCTCCAGTGCAGACACCCGAGAGGAGCCTaGCTCACAGACACAGCCAGG +
Preference number: 2 (lower is better)
Translates to: VTLTRVKSSSALPGLQCRHPRGA*LTDTAR
Trigger: CCTGGCTGTGTCTGTGAGGCAGGCTCCTCTCGGGTG...TCTGCACTGGAGCCCAGGGAGGGCAGAGGAAGATTTCACACGAGTGAGTGTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CCA 90 bp TCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGTGGCTGGACACGCCTGTCAGAGATCCCTaGTTTTGGGTTCAGAGTGTC +
Preference number: 2 (lower is better)
Translates to: SSVLQQACSALSRQWLDTPVRDP*FWVQSV
Trigger: GACACTCTGAACCCAAAACCAGGGATCTCTGACAGG...CGTGTCCAGCCACTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR CCA 90 bp GTGACACTCACTCGTGTGAAATCTTCCTCTGCCCTCCCTGGGCTCCAGTGCAGAACAGCCAGGGCAGGCTaGACCCAAGGACGACCCTTG +
Preference number: 2 (lower is better)
Translates to: VTLTRVKSSSALPGLQCRTARAG*TQGRPL
Trigger: CAAGGGTCGTCCTTGGGTCCAGCCTGCCCTGGCTGT...TCTGCACTGGAGCCCAGGGAGGGCAGAGGAAGATTTCACACGAGTGAGTGTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CCA 90 bp GGCCAGCAATCCCGACCCATCATGCTGTCTACTCCCACCAACAGGCAGGGTGACGCTCAGCAGGGATTCTaGCTGCTCAGAGCTGGCTCT +
Preference number: 2 (lower is better)
Translates to: GQQSRPIMLSTPTNRQGDAQQGF*LLRAGS
Trigger: AGAGCCAGCTCTGAGCAGCCAGAATCCCTGCTGAGC...GTCACCCTGCCTGTTGGTGGGAGTAGACAGCATGATGGGTCGGGATTGCTGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CAA 90 bp CCAGCAAGAAAGGAGCCAGAGTCTACCCAGGGGCTGGTAGCACTCTaGCCCAACCATGAAGCATTTGGAAGGCCCAGGCCCATACCCCAG +
Preference number: 2 (lower is better)
Translates to: PARKEPESTQGLVAL*PNHEAFGRPRPIPQ
Trigger: CTGGGGTATGGGCCTGGGCCTTCCAAATGCTTCATGGTTGGGCAAGAGTGCTACCAGCCCCTGGGTAGACTCTGGCTCCTTTCTTGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CAA 90 bp CCAGGCTCCATGTGCATCTCTCAGGGGCTTTCTTCATCTTGGTTCTaGGTGGGGCTCTGCAGCAGACCTCTGGTGTCTCGGAGGCAGCAG +
Preference number: 2 (lower is better)
Translates to: PGSMCISQGLSSSWF*VGLCSRPLVSRRQQ
Trigger: CTGCTGCCTCCGAGACACCAGAGGTCTGCTGCAGAGCCCCACCAAGAACCAAGATGAAGAAAGCCCCTGAGAGATGCACATGGAGCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR TCA 90 bp CAGGAAGGCGTTCCTCGTCCTCTCAGACAGCTGTACCCCACAAGGTCAGCAGCAGACCCTGAGGGACCATaGGTCTCAGGAAAGAGGGAC +
Preference number: 2 (lower is better)
Translates to: QEGVPRPLRQLYPTRSAADPEGP*VSGKRD
Trigger: GTCCCTCTTTCCTGAGACTCATGGTCCCTCAGGGTC...TGCTGCTGACCTTGTGGGGTACAGCTGTCTGAGAGGACGAGGAACGCCTTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR GCA 90 bp GAGAGCTCCCGGGACAGGAGTGGAGAGGTAAGGTCAGGGCTGCTTCCCTACAGTTTCTTGGTGGGGCTCTaGAGCAGACCTCTGGTGTCT +
Preference number: 2 (lower is better)
Translates to: ESSRDRSGEVRSGLLPYSFLVGL*SRPLVS
Trigger: AGACACCAGAGGTCTGCTGCAGAGCCCCACCAAGAA...ACTGTAGGGAAGCAGCCCTGACCTTACCTCTCCACTCCTGTCCCGGGAGCTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR GCA 90 bp TGTAGACCAAAGAGGTGTCACCTCCAAGCTGAACCCTTTGTGGCAGCTGGACTCCCTGCTGCCCAGCCCTaGCTGGAGCCAACAGTTGGG +
Preference number: 2 (lower is better)
Translates to: CRPKRCHLQAEPFVAAGLPAAQP*LEPTVG
Trigger: CCCAACTGTTGGCTCCAGGCAGGGCTGGGCAGCAGG...GAGTCCAGCTGCCACAAAGGGTTCAGCTTGGAGGTGACACCTCTTTGGTCTACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR CCA 90 bp AGGCAGGAGATCATGGGTTTATTGTTCAGTCCCAGGCTCCCTGCTGCCCAGCCCAGGCTGAGGCCAGCCTaGGCTATAAGGAGACCTTGC +
Preference number: 2 (lower is better)
Translates to: RQEIMGLLFSPRLPAAQPRLRPA*AIRRPC
Trigger: GCAAGGTCTCCTTATAGCCCAGGCTGGCCTCAGCCT...GGGCTGGGCAGCAGGGAGCCTGGGACTGAACAATAAACCCATGATCTCCTGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR-3UTR CCA 90 bp TGTAGACCAAAGAGGTGTCACCTCCAAGCTGAACCCTTTGTGGCAGCTGGACTCCTGCCCAGCCCTGCCTaGAGCCAACAGTTGGGGCGA +
Preference number: 2 (lower is better)
Translates to: CRPKRCHLQAEPFVAAGLLPSPA*SQQLGR
Trigger: TCGCCCCAACTGTTGGCTCCAGGCAGGGCTGGGCAG...GAGTCCAGCTGCCACAAAGGGTTCAGCTTGGAGGTGACACCTCTTTGGTCTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR CCA 90 bp TTACTGGAGTCTGCTCTGCTCGGGCCAGCGTGGGCCCCAGACGCAGACGTGAGCCGAGGGCAGAAGCCTTaGCACCCTCCAAAAATTATT +
Preference number: 2 (lower is better)
Translates to: LLESALLGPAWAPDADVSRGQKP*HPPKII
Trigger: AATAATTTTTGGAGGGTGCCAAGGCTTCTGCCCTCG...GCTCACGTCTGCGTCTGGGGCCCACGCTGGCCCGAGCAGAGCAGACTCCAGTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR TCA 90 bp CGTAGGCCAGTTCCTTGGAGGAAAGAGACAGGAAGGCGTTCCTCGTCCTCTCAGGCCAGGGGGAAGCAATaGCAAGACTGGGTGCCTAGA +
Preference number: 2 (lower is better)
Translates to: RRPVPWRKETGRRSSSSQARGKQ*QDWVPR
Trigger: TCTAGGCACCCAGTCTTGTCATTGCTTCCCCCTGGC...CTGAGAGGACGAGGAACGCCTTCCTGTCTCTTTCCTCCAAGGAACTGGCCTACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR GCA 90 bp CAGGGAGGGCTGAAGGCATCTGCTTCAAAGCACGTGCCTCACCTGGCAACAGATCAGGAACGTTCTCTCTaGATGGAGGAGCTGGGGTCC +
Preference number: 2 (lower is better)
Translates to: QGGLKASASKHVPHLATDQERSL*MEELGS
Trigger: GGACCCCAGCTCCTCCATGCAGAGAGAACGTTCCTG...ATCTGTTGCCAGGTGAGGCACGTGCTTTGAAGCAGATGCCTTCAGCCCTCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CAA 90 bp TCAGAGGATAGAGGCCTCAAACAGCTTTACCACAGTGGGGCCTGCTaGCCTCTCAAGCTCCCTATGGGGTTCCAAGGAGGACTGACCAGC +
Preference number: 2 (lower is better)
Translates to: SEDRGLKQLYHSGAC*PLKLPMGFQGGLTS
Trigger: GCTGGTCAGTCCTCCTTGGAACCCCATAGGGAGCTTGAGAGGCAAGCAGGCCCCACTGTGGTAAAGCTGTTTGAGGCCTCTATCCTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR TCA 90 bp GGCCTGCTCCAGGGCAAGGGTTACTGGAGTCTGCTCTGCTCGGGCCAGCGTGGGTATTGTCAGCTTCTTTaGGATCCACAATACACAGGA +
Preference number: 2 (lower is better)
Translates to: GLLQGKGYWSLLCSGQRGYCQLL*DPQYTG
Trigger: TCCTGTGTATTGTGGATCTCAAAGAAGCTGACAATA...CCCACGCTGGCCCGAGCAGAGCAGACTCCAGTAACCCTTGCCCTGGAGCAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR GCA 90 bp CAGGAAGGCGTTCCTCGTCCTCTCAGACAGCTGTACCCCACAAGGTCAGCAGCAAATGACAAGACTGGGTaGCTAGAGCTGGCAGGAAGC +
Preference number: 2 (lower is better)
Translates to: QEGVPRPLRQLYPTRSAANDKTG*LELAGS
Trigger: GCTTCCTGCCAGCTCTAGGCACCCAGTCTTGTCATT...TGCTGCTGACCTTGTGGGGTACAGCTGTCTGAGAGGACGAGGAACGCCTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CCA 90 bp CCTCCAGGAACGTTCTCTCTGCATGGAGGAGCTGGGGTCCGCTTCTCTGAAGGCAGAAATGGGAGTTGGTaGGAAGCTACCCTGCTCAAG +
Preference number: 2 (lower is better)
Translates to: PPGTFSLHGGAGVRFSEGRNGSW*EATLLK
Trigger: CTTGAGCAGGGTAGCTTCCCACCAACTCCCATTTCT...GCCTTCAGAGAAGCGGACCCCAGCTCCTCCATGCAGAGAGAACGTTCCTGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR-3UTR CCA 90 bp GCAATCCAGGATAGCATTGAGAGCTCCCGGGACAGGAGTGGAGAGGTAAGGTCACAGATTGGGACAGGATaGAGGAGAGGAGAGCAGGGC +
Preference number: 2 (lower is better)
Translates to: AIQDSIESSRDRSGEVRSQIGTG*RRGEQG
Trigger: GCCCTGCTCTCCTCTCCTCCATCCTGTCCCAATCTG...TGACCTTACCTCTCCACTCCTGTCCCGGGAGCTCTCAATGCTATCCTGGATTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR TCA 90 bp CAGGGAGGGCTGAAGGCATCTGCTTCAAAGCACGTGCCTCACCTGGCAACAGATACTCTTGCCCAACCATaGAGCATTTGGAAGGCCCAG +
Preference number: 2 (lower is better)
Translates to: QGGLKASASKHVPHLATDTLAQP*SIWKAQ
Trigger: CTGGGCCTTCCAAATGCTTCATGGTTGGGCAAGAGT...ATCTGTTGCCAGGTGAGGCACGTGCTTTGAAGCAGATGCCTTCAGCCCTCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR-3UTR GCA 90 bp GAGATCCCTGGTTTTGGGTTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCACCCCCAGGGCAAACTaGCTGCTCCAGCTGGCCAGG +
Preference number: 2 (lower is better)
Translates to: EIPGFGFRVSAPNTVDVCTPRAN*LLQLAR
Trigger: CCTGGCCAGCTGGAGCAGGCAGTTTGCCCTGGGGGT...GCAAACATCAACTGTGTTTGGTGCTGACACTCTGAACCCAAAACCAGGGATCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR-3UTR CCA 90 bp AGGCAGGAGATCATGGGTTTATTGTTCAGTCCCAGGCTCCCTGCTGCCCAGCCCAGAGATCCCTGGTTTTaGGTTCAGAGTGTCAGCACC +
Preference number: 2 (lower is better)
Translates to: RQEIMGLLFSPRLPAAQPRDPWF*VQSVST
Trigger: GGTGCTGACACTCTGAACCCAAAACCAGGGATCTCT...GGGCTGGGCAGCAGGGAGCCTGGGACTGAACAATAAACCCATGATCTCCTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR GCA 90 bp TTGGTCCCTGCCACAGCTACAGTAGCAGTAGTGTCCCTGGGGCCAGGCAAGCCTAACACAGTTGATGTTTaGAGTCTGTTGGGTGGACAG +
Preference number: 2 (lower is better)
Translates to: LVPATATVAVVSLGPGKPNTVDV*SLLGGQ
Trigger: CTGTCCACCCAACAGACTGCAAACATCAACTGTGTT...AGGCTTGCCTGGCCCCAGGGACACTACTGCTACTGTAGCTGTGGCAGGGACCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR CCA 90 bp TTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCAGTCTGTTGGGTGGACAGACCGAACATCTGACGTaGGGCTGGGGCAGCTGGGGA +
Preference number: 2 (lower is better)
Translates to: FRVSAPNTVDVCSLLGGQTEHLT*GWGSWG
Trigger: TCCCCAGCTGCCCCAGCCCCACGTCAGATGTTCGGT...CTGTCCACCCAACAGACTGCAAACATCAACTGTGTTTGGTGCTGACACTCTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR-3UTR TCA 90 bp TTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCAGTCTGTTGGGTGGACAGCTGAGGTCAGGGACTTaGCCCAGGAGGTCAAGGCAG +
Preference number: 2 (lower is better)
Translates to: FRVSAPNTVDVCSLLGGQLRSGT*PRRSRQ
Trigger: CTGCCTTGACCTCCTGGGTCAAGTCCCTGACCTCAG...CTGTCCACCCAACAGACTGCAAACATCAACTGTGTTTGGTGCTGACACTCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR CCA 90 bp GAGATCCCTGGTTTTGGGTTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCACTGCCTGCTCCAGCTaGCCAGGCCACACCCAGTAT +
Preference number: 2 (lower is better)
Translates to: EIPGFGFRVSAPNTVDVCTACSS*PGHTQY
Trigger: ATACTGGGTGTGGCCTGGCCAGCTGGAGCAGGCAGT...GCAAACATCAACTGTGTTTGGTGCTGACACTCTGAACCCAAAACCAGGGATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR-3UTR TCA 90 bp TTCTCTTTAGGTGTTTCCTCAGGGCTGGAGACAAGGATGCTGAGGGACAATTTGGGACAGCAGGTATCCTaGGGTCAGGGACTTGACCCA +
Preference number: 2 (lower is better)
Translates to: FSLGVSSGLETRMLRDNLGQQVS*GQGLDP
Trigger: TGGGTCAAGTCCCTGACCTCAGGATACCTGCTGTCC...CAAATTGTCCCTCAGCATCCTTGTCTCCAGCCCTGAGGAAACACCTAAAGAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR GCA 90 bp CCTCCAGGAACGTTCTCTCTGCATGGAGGAGCTGGGGTCCGCTTCTCTGAAGGCTCAGAGATTAAAGGGTaGATAGAAACCAGGATGATG +
Preference number: 2 (lower is better)
Translates to: PPGTFSLHGGAGVRFSEGSEIKG*IETRMM
Trigger: CATCATCCTGGTTTCTATGCACCCTTTAATCTCTGA...GCCTTCAGAGAAGCGGACCCCAGCTCCTCCATGCAGAGAGAACGTTCCTGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR-3UTR CCA 90 bp TCCTCAGGGCTGGAGACAAGGATGCTGAGGGACAATTTGGTTTCTTTAGGCAGGGGAAGAAATGGGAGTTaGTGGGAAGCTACCCTGCTC +
Preference number: 2 (lower is better)
Translates to: SSGLETRMLRDNLVSLGRGRNGS*WEATLL
Trigger: GAGCAGGGTAGCTTCCCACCAACTCCCATTTCTTCC...CCTGCCTAAAGAAACCAAATTGTCCCTCAGCATCCTTGTCTCCAGCCCTGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR-3UTR TCA 90 bp CATTGCTTCTCTTTAGGTGTTTCCTCAGGGCTGGAGACAAGGATGCTGAGGGACGTTAAATTTTATCCCTaGATGACAGTGAAGACCCTT +
Preference number: 2 (lower is better)
Translates to: HCFSLGVSSGLETRMLRDVKFYP*MTVKTL
Trigger: AAGGGTCTTCACTGTCATTCAGGGATAAAATTTAAC...GTCCCTCAGCATCCTTGTCTCCAGCCCTGAGGAAACACCTAAAGAGAAGCAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR CCA 90 bp TTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCAGTCTGTTGGGTGGACAGTTACAAAGGAAGAAATaGGAGTTGGTGGGAAGCTAC +
Preference number: 2 (lower is better)
Translates to: FRVSAPNTVDVCSLLGGQLQRKK*ELVGSY
Trigger: GTAGCTTCCCACCAACTCCCATTTCTTCCTTTGTAA...CTGTCCACCCAACAGACTGCAAACATCAACTGTGTTTGGTGCTGACACTCTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CAA 90 bp TCTAATGCCAAAAATGCAGAAATTAACACCATATTGTCAGCTTCTTaGAGATCCACAATACACAGGAGAGGACGCGCAGACAACAGCCCC +
Preference number: 2 (lower is better)
Translates to: SNAKNAEINTILSAS*RSTIHRRGRADNSP
Trigger: GGGGCTGTTGTCTGCGCGTCCTCTCCTGTGTATTGTGGATCTCAAAGAAGCTGACAATATGGTGTTAATTTCTGCATTTTTGGCATTAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 72 bp TGCACTGGGCGCAGACAGAGGGCACGGCGGGCGGGATaGACAGGCTGCCTGGGGATGGAGGGTGGCCTGCTC +
Preference number: 3 (lower is better)
Translates to: CTGRRQRARRAG*TGCLGMEGGLL
Trigger: GAGCAGGCCACCCTCCATCCCCAGGCAGCCTGTCCATCCCGCCCGCCGTGCCCTCTGTCTGCGCCCAGTGCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR GCA 72 bp CTGCCTGGAGCCAACAGTTGGGGCGAGATGGGCGGCTaGTGCCTGATGCAGGGAGCCGGGCCCTCTGGAGGG +
Preference number: 3 (lower is better)
Translates to: LPGANSWGEMGG*CLMQGAGPSGG
Trigger: CCCTCCAGAGGGCCCGGCTCCCTGCATCAGGCAGCAGCCGCCCATCTCGCCCCAACTGTTGGCTCCAGGCAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR GCA 72 bp CCTGGAGCCAACAGTTGGGGCGAGATGGGCGGCTGCTaGCTGATGCAGGGAGCCGGGCCCTCTGGAGGGAAC +
Preference number: 3 (lower is better)
Translates to: PGANSWGEMGGC*LMQGAGPSGGN
Trigger: GTTCCCTCCAGAGGGCCCGGCTCCCTGCATCAGGCAGCAGCCGCCCATCTCGCCCCAACTGTTGGCTCCAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CCA 72 bp GGGATGGAGGGTGGCCTGCTCCAGGGCAAGGGTTACTaGAGTCTGCTCTGCTCGGGCCAGCGTGGGCCCCAG +
Preference number: 3 (lower is better)
Translates to: GMEGGLLQGKGY*SLLCSGQRGPQ
Trigger: CTGGGGCCCACGCTGGCCCGAGCAGAGCAGACTCCAGTAACCCTTGCCCTGGAGCAGGCCACCCTCCATCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR TCA 72 bp GAGCCAACAGTTGGGGCGAGATGGGCGGCTGCTGCCTaGTGCAGGGAGCCGGGCCCTCTGGAGGGAACAGGT +
Preference number: 3 (lower is better)
Translates to: EPTVGARWAAAA*CREPGPLEGTG
Trigger: ACCTGTTCCCTCCAGAGGGCCCGGCTCCCTGCATCAGGCAGCAGCCGCCCATCTCGCCCCAACTGTTGGCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CCA 72 bp GGGATCTCAGCGCCAGTGTCGGAAGCAGCATGCACCTaGCACTGCCCTCGGGAAGGGCACTCGGAGGTCAGC +
Preference number: 3 (lower is better)
Translates to: GISAPVSEAACT*HCPREGHSEVS
Trigger: GCTGACCTCCGAGTGCCCTTCCCGAGGGCAGTGCCAGGTGCATGCTGCTTCCGACACTGGCGCTGAGATCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CCA 72 bp CAAGGGTTACTGGAGTCTGCTCTGCTCGGGCCAGCGTaGGCCCCAGACGCAGACGTGAGCAGTCTCCCTCCC +
Preference number: 3 (lower is better)
Translates to: QGLLESALLGPA*APDADVSSLPP
Trigger: GGGAGGGAGACTGCTCACGTCTGCGTCTGGGGCCCACGCTGGCCCGAGCAGAGCAGACTCCAGTAACCCTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CAA 90 bp GGCCTGCTCCAGGGCAAGGGTTACTGGAGTCTGCTCTGCTCGGGCCAGCGTGGGCACAGTGGGGCCTGCTaGCCTCTCAAGCTCCCTATG +
Preference number: 3 (lower is better)
Translates to: GLLQGKGYWSLLCSGQRGHSGAC*PLKLPM
Trigger: CATAGGGAGCTTGAGAGGCAAGCAGGCCCCACTGTG...CCCACGCTGGCCCGAGCAGAGCAGACTCCAGTAACCCTTGCCCTGGAGCAGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR GCA 72 bp CCTAATCCTCAGGCAGGGCCTACCCCCAGGGCAAACTaGCTGCTCCAGCTGGCCAGGCCACACCCAGTATCC +
Preference number: 3 (lower is better)
Translates to: PNPQAGPTPRAN*LLQLARPHPVS
Trigger: GGATACTGGGTGTGGCCTGGCCAGCTGGAGCAGGCAGTTTGCCCTGGGGGTAGGCCCTGCCTGAGGATTAGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR GCA 72 bp AGGCAGCAGACGGGCACAGGCAGCCTGGTTGGTCCCTaGCACAGCTACAGTAGCAGTAGTGTCCCTGGGGCC +
Preference number: 3 (lower is better)
Translates to: RQQTGTGSLVGP*HSYSSSSVPGA
Trigger: GGCCCCAGGGACACTACTGCTACTGTAGCTGTGGCAGGGACCAACCAGGCTGCCTGTGCCCGTCTGCTGCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR GCA 72 bp CCCTCAGCAGGCAGTGGCTGGACACGTAGGCACCAATaGCGATGGCCTGGAGCCACAGGTCAAGGGGGACAC +
Preference number: 3 (lower is better)
Translates to: PSAGSGWTRRHQ*RWPGATGQGGH
Trigger: GTGTCCCCCTTGACCTGTGGCTCCAGGCCATCGGCATTGGTGCCTACGTGTCCAGCCACTGCCTGCTGAGGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR GCA 72 bp CAGGATGTGCTCCAGCGTGCTCCAGCAAGCCTGCAGTaGCCTCAGCAGGCAGTGGCTGGACACGTAGGCACC +
Preference number: 3 (lower is better)
Translates to: QDVLQRAPASLQ*PQQAVAGHVGT
Trigger: GGTGCCTACGTGTCCAGCCACTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGAGCACATCCTG
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CCA 72 bp CAGGGCCTACCCCCAGGGCAAACTGCCTGCTCCAGCTaGCCAGGCCACACCCAGTATCCCTCCAGGAACGTT +
Preference number: 3 (lower is better)
Translates to: QGLPPGQTACSS*PGHTQYPSRNV
Trigger: AACGTTCCTGGAGGGATACTGGGTGTGGCCTGGCCAGCTGGAGCAGGCAGTTTGCCCTGGGGGTAGGCCCTG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CCA 72 bp TCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGTGGCTaGACACGTAGGCACCAATGCCGATGGCCTGGAGCC +
Preference number: 3 (lower is better)
Translates to: SSKPAVPSAGSG*TRRHQCRWPGA
Trigger: GGCTCCAGGCCATCGGCATTGGTGCCTACGTGTCCAGCCACTGCCTGCTGAGGGCACTGCAGGCTTGCTGGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR CAA 90 bp TGGGCGCAGACAGAGGGCACGGCGGGCGGGATGGACAGGCTGCCTGGGGATGGACCGAGGGCAGAAGCCTaGGCACCCTCCAAAAATTAT +
Preference number: 3 (lower is better)
Translates to: WAQTEGTAGGMDRLPGDGPRAEA*APSKNY
Trigger: ATAATTTTTGGAGGGTGCCAAGGCTTCTGCCCTCGG...TCCATCCCCAGGCAGCCTGTCCATCCCGCCCGCCGTGCCCTCTGTCTGCGCCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR GCA 72 bp CAGTGTGAGTCAACCGGGAGCCACCAGAGGGCAGCATaGCAGGTGGGCGGAGCATGGGCCTATGGTCCAGAT +
Preference number: 3 (lower is better)
Translates to: QCESTGSHQRAA*QVGGAWAYGPD
Trigger: ATCTGGACCATAGGCCCATGCTCCGCCCACCTGGCATGCTGCCCTCTGGTGGCTCCCGGTTGACTCACACTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 72 bp AGAGGAGCCTGCCTCACAGACACAGCCAGGGCAGGCTaGACCCAAGGACGACCCTTGCTACTCCAGGGAAGG +
Preference number: 3 (lower is better)
Translates to: RGACLTDTARAG*TQGRPLLLQGR
Trigger: CCTTCCCTGGAGTAGCAAGGGTCGTCCTTGGGTCCAGCCTGCCCTGGCTGTGTCTGTGAGGCAGGCTCCTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 72 bp AGTCAACCGGGAGCCACCAGAGGGCAGCATGCCAGGTaGGCGGAGCATGGGCCTATGGTCCAGATGGATCCT +
Preference number: 3 (lower is better)
Translates to: SQPGATRGQHAR*AEHGPMVQMDP
Trigger: AGGATCCATCTGGACCATAGGCCCATGCTCCGCCCACCTGGCATGCTGCCCTCTGGTGGCTCCCGGTTGACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CAA 90 bp CGAGATGGGCGGCTGCTGCCTGATGCAGGGAGCCGGGCCCTCTGGAGGGAACAGGGGATGTCACTGGGATaGACTGATGGTCTCATATGC +
Preference number: 3 (lower is better)
Translates to: RDGRLLPDAGSRALWREQGMSLG*TDGLIC
Trigger: GCATATGAGACCATCAGTCAATCCCAGTGACATCCC...CTGTTCCCTCCAGAGGGCCCGGCTCCCTGCATCAGGCAGCAGCCGCCCATCTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR TCA 72 bp TATGACAGGGTCTCAGGCCAGAAGCGGTGGCAGTGGTaGGCCAGTACAGGCCACCTGGGGAGCACCGAGACT +
Preference number: 3 (lower is better)
Translates to: YDRVSGQKRWQW*ASTGHLGSTET
Trigger: AGTCTCGGTGCTCCCCAGGTGGCCTGTACTGGCTCACCACTGCCACCGCTTCTGGCCTGAGACCCTGTCATA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR GCA 72 bp CTCCCTAGTGGGGCCAACCTAGGCATCCCCAGTGTCTaGTCTAAGCACAGGAGCCCTGGGCTACCCATGGCT +
Preference number: 3 (lower is better)
Translates to: LPSGANLGIPSV*SKHRSPGLPMA
Trigger: AGCCATGGGTAGCCCAGGGCTCCTGTGCTTAGAGCAGACACTGGGGATGCCTAGGTTGGCCCCACTAGGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR GCA 72 bp CGCTGGACAATCACAATCTACTACATGACACGGGCTTaGACTGGGCGCAGACAGAGGGCACGGCGGGCGGGA +
Preference number: 3 (lower is better)
Translates to: RWTITIYYMTRA*TGRRQRARRAG
Trigger: TCCCGCCCGCCGTGCCCTCTGTCTGCGCCCAGTGCAAGCCCGTGTCATGTAGTAGATTGTGATTGTCCAGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 72 bp CAGCTCACGAGCAACTGGTGGGTCAGGCAGGGACCCTaGATGAGAGAGAGAGGGAGACAAGGGGAGCTCTGG +
Preference number: 3 (lower is better)
Translates to: QLTSNWWVRQGP*MRERGRQGELW
Trigger: CCAGAGCTCCCCTTGTCTCCCTCTCTCTCTCATCCAGGGTCCCTGCCTGACCCACCAGTTGCTCGTGAGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR TCA 72 bp AACTCACAGCCAGGAGGCCCCGGACCAGGGAGGGACTaGCACGAGCTGAAAGCAGGACACAAGTCAGAGGCA +
Preference number: 3 (lower is better)
Translates to: NSQPGGPGPGRD*HELKAGHKSEA
Trigger: TGCCTCTGACTTGTGTCCTGCTTTCAGCTCGTGTCAGTCCCTCCCTGGTCCGGGGCCTCCTGGCTGTGAGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR TCA 72 bp GTTGGGTGGACAGCAGGTATCCTGAGGTCAGGGACTTaGCCCAGGAGGTCAAGGCAGAGACAGAGCCCCTCG +
Preference number: 3 (lower is better)
Translates to: VGWTAGILRSGT*PRRSRQRQSPS
Trigger: CGAGGGGCTCTGTCTCTGCCTTGACCTCCTGGGTCAAGTCCCTGACCTCAGGATACCTGCTGTCCACCCAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR TCA 72 bp CCAGAGCTTGAGAGACCACCTCCCAGCAGGGAGGGCTaGAGGCATCTGCTTCAAAGCACGTGCCTCACCTGG +
Preference number: 3 (lower is better)
Translates to: PELERPPPSREG*RHLLQSTCLTW
Trigger: CCAGGTGAGGCACGTGCTTTGAAGCAGATGCCTTCAGCCCTCCCTGCTGGGAGGTGGTCTCTCAAGCTCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR GCA 72 bp CTGGTACAGGTAGGCCGAGGTGAAGAGAGCATTGACTaGCAAACTCACAGCCAGGAGGCCCCGGACCAGGGA +
Preference number: 3 (lower is better)
Translates to: LVQVGRGEESID*QTHSQEAPDQG
Trigger: TCCCTGGTCCGGGGCCTCCTGGCTGTGAGTTTGGCAGTCAATGCTCTCTTCACCTCGGCCTACCTGTACCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR GCA 72 bp CATAAAAGGCCCTCCTGGGTGCGCAGGGTGCCAGGCTaGCCTGCTGGGAGGAGCCATTGCTTCTCTTTAGGT +
Preference number: 3 (lower is better)
Translates to: HKRPSWVRRVPG*PAGRSHCFSLG
Trigger: ACCTAAAGAGAAGCAATGGCTCCTCCCAGCAGGGCAGCCTGGCACCCTGCGCACCCAGGAGGGCCTTTTATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CCA 72 bp AGCCCTGGGCTACCCATGGCTACCGAACATCTGACGTaGGGCTGGGGCAGCTGGGGAGATGAACCAGAAGAA +
Preference number: 3 (lower is better)
Translates to: SPGLPMATEHLT*GWGSWGDEPEE
Trigger: TTCTTCTGGTTCATCTCCCCAGCTGCCCCAGCCCCACGTCAGATGTTCGGTAGCCATGGGTAGCCCAGGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR TCA 72 bp GTCTACCCAGGGGCTGGTAGCACTCTTGCCCAACCATaGAGCATTTGGAAGGCCCAGGCCCATACCCCAGCA +
Preference number: 3 (lower is better)
Translates to: VYPGAGSTLAQP*SIWKAQAHTPA
Trigger: TGCTGGGGTATGGGCCTGGGCCTTCCAAATGCTTCATGGTTGGGCAAGAGTGCTACCAGCCCCTGGGTAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR TCA 72 bp GAGTCTCAGGAAAGAGGGACCAGGAGGTTCGGGGGATaGGCGGGCTGCTCTAGTCCTAGCTCACCATGCTCA +
Preference number: 3 (lower is better)
Translates to: ESQERGTRRFGG*AGCSSPSSPCS
Trigger: TGAGCATGGTGAGCTAGGACTAGAGCAGCCCGCTCATCCCCCGAACCTCCTGGTCCCTCTTTCCTGAGACTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR TCA 72 bp CCCAAGGACGACCCTTGCTACTCCAGGGAAGGACCCTaGGGGACCATGAGTCTCAGGAAAGAGGGACCAGGA +
Preference number: 3 (lower is better)
Translates to: PKDDPCYSREGP*GTMSLRKEGPG
Trigger: TCCTGGTCCCTCTTTCCTGAGACTCATGGTCCCTCAGGGTCCTTCCCTGGAGTAGCAAGGGTCGTCCTTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR TCA 72 bp GTTAGCAGACAAGCGGCAGTAGCAACACCACCAGTGTaGGTCAACCGGGAGCCACCAGAGGGCAGCATGCCA +
Preference number: 3 (lower is better)
Translates to: VSRQAAVATPPV*VNREPPEGSMP
Trigger: TGGCATGCTGCCCTCTGGTGGCTCCCGGTTGACTCACACTGGTGGTGTTGCTACTGCCGCTTGTCTGCTAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR TCA 72 bp TCTGAACGGGGACGGCCCAGTGGTTGTCCCAGTCAATaGGCCACAACCCAAGGGTGCCTGAGTTTCCTCAGC +
Preference number: 3 (lower is better)
Translates to: SERGRPSGCPSQ*ATTQGCLSFLS
Trigger: GCTGAGGAAACTCAGGCACCCTTGGGTTGTGGCTCATTGACTGGGACAACCACTGGGCCGTCCCCGTTCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR GCA 72 bp CAGGGGCTTTCTTCATCTTGGTTCTTGGTGGGGCTCTaGAGCAGACCTCTGGTGTCTCGGAGGCAGCAGACG +
Preference number: 3 (lower is better)
Translates to: QGLSSSWFLVGL*SRPLVSRRQQT
Trigger: CGTCTGCTGCCTCCGAGACACCAGAGGTCTGCTGCAGAGCCCCACCAAGAACCAAGATGAAGAAAGCCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR CAA 90 bp CCTCCAGGAACGTTCTCTCTGCATGGAGGAGCTGGGGTCCGCTTCTCTGAAGGCAGGAAGAAATGGGAGTaGGTGGGAAGCTACCCTGCT +
Preference number: 3 (lower is better)
Translates to: PPGTFSLHGGAGVRFSEGRKKWE*VGSYPA
Trigger: AGCAGGGTAGCTTCCCACCAACTCCCATTTCTTCCT...GCCTTCAGAGAAGCGGACCCCAGCTCCTCCATGCAGAGAGAACGTTCCTGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR GCA 72 bp GGGAGGCTGAGGCCAGCCTGGGCTATAAGGAGACCTTaGTTAAACCAACATGAGCAAGGGTGGAACGAGGCC +
Preference number: 3 (lower is better)
Translates to: GRLRPAWAIRRP*LNQHEQGWNEA
Trigger: GGCCTCGTTCCACCCTTGCTCATGTTGGTTTAAGCAAGGTCTCCTTATAGCCCAGGCTGGCCTCAGCCTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR GCA 72 bp AACTTGCTGACCATAAGGAACTGCGGGGCTTTCTACTaGCCACCCGAGAGGAGCCTGCCTCACAGACACAGC +
Preference number: 3 (lower is better)
Translates to: NLLTIRNCGAFY*PPERSLPHRHS
Trigger: GCTGTGTCTGTGAGGCAGGCTCCTCTCGGGTGGGCAGTAGAAAGCCCCGCAGTTCCTTATGGTCAGCAAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 72 bp GCATCTCTCAGGGGCTTTCTTCATCTTGGTTCTTGGTaGGGCTCTGCAGCAGACCTCTGGTGTCTCGGAGGC +
Preference number: 3 (lower is better)
Translates to: ASLRGFLHLGSW*GSAADLWCLGG
Trigger: GCCTCCGAGACACCAGAGGTCTGCTGCAGAGCCCCACCAAGAACCAAGATGAAGAAAGCCCCTGAGAGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CCA 72 bp AGCCACCAGAGGGCAGCATGCCAGGTGGGCGGAGCATaGGCCTATGGTCCAGATGGATCCTTAGACAATGAA +
Preference number: 3 (lower is better)
Translates to: SHQRAACQVGGA*AYGPDGSLDNE
Trigger: TTCATTGTCTAAGGATCCATCTGGACCATAGGCCCATGCTCCGCCCACCTGGCATGCTGCCCTCTGGTGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR TCA 72 bp GTTGTCCCAGTCAATGAGCCACAACCCAAGGGTGCCTaGGTTTCCTCAGCTTCTGCCAGCGACCCCAGAACA +
Preference number: 3 (lower is better)
Translates to: VVPVNEPQPKGA*VSSASASDPRT
Trigger: TGTTCTGGGGTCGCTGGCAGAAGCTGAGGAAACTCAGGCACCCTTGGGTTGTGGCTCATTGACTGGGACAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR TCA 72 bp TCCTTTCTCAGGGACACCACCTCTATGTACCTGGGATaGTCCCACTCTGAACGGGGACGGCCCAGTGGTTGT +
Preference number: 3 (lower is better)
Translates to: SFLRDTTSMYLG*SHSERGRPSGC
Trigger: ACAACCACTGGGCCGTCCCCGTTCAGAGTGGGATCATCCCAGGTACATAGAGGTGGTGTCCCTGAGAAAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR GCA 72 bp GCCACAACCCAAGGGTGCCTGAGTTTCCTCAGCTTCTaGCAGCGACCCCAGAACACGCTTTCTCCAACTAAC +
Preference number: 3 (lower is better)
Translates to: ATTQGCLSFLSF*QRPQNTLSPTN
Trigger: GTTAGTTGGAGAAAGCGTGTTCTGGGGTCGCTGGCAGAAGCTGAGGAAACTCAGGCACCCTTGGGTTGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 72 bp GGCTCCATGTGCATCTCTCAGGGGCTTTCTTCATCTTaGTTCTTGGTGGGGCTCTGCAGCAGACCTCTGGTG +
Preference number: 3 (lower is better)
Translates to: GSMCISQGLSSS*FLVGLCSRPLV
Trigger: CACCAGAGGTCTGCTGCAGAGCCCCACCAAGAACCAAGATGAAGAAAGCCCCTGAGAGATGCACATGGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CCA 72 bp TGGCCATTACCTTCACTGCCAGTGTGTCACCTCTCGTaGTCCTCAAATCCACTGAGGCCAGCACCTCAGAGC +
Preference number: 3 (lower is better)
Translates to: WPLPSLPVCHLS*SSNPLRPAPQS
Trigger: GCTCTGAGGTGCTGGCCTCAGTGGATTTGAGGACCACGAGAGGTGACACACTGGCAGTGAAGGTAATGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 72 bp GACACTCACTCGTGTGAAATCTTCCTCTGCCCTCCCTaGGCTCCAGTGCAGAGGGTGAAAGAGCCGCACTTA +
Preference number: 3 (lower is better)
Translates to: DTHSCEIFLCPP*APVQRVKEPHL
Trigger: TAAGTGCGGCTCTTTCACCCTCTGCACTGGAGCCCAGGGAGGGCAGAGGAAGATTTCACACGAGTGAGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR TCA 72 bp GCTGAACCCTTTGTGGCAGCTGGACTCATGGAGTCCTaGCCTCTGACTGGTACGAGGCAATCCAGGATAGCA +
Preference number: 3 (lower is better)
Translates to: AEPFVAAGLMES*PLTGTRQSRIA
Trigger: TGCTATCCTGGATTGCCTCGTACCAGTCAGAGGTCAGGACTCCATGAGTCCAGCTGCCACAAAGGGTTCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR TCA 72 bp GGGTCCTGTTTGTGCGGAGCGGCTACTGATCTAGGATaGTCCATCCTCCTCCTACCTGGCAGACCATTGGAA +
Preference number: 3 (lower is better)
Translates to: GSCLCGAATDLG*SILLLPGRPLE
Trigger: TTCCAATGGTCTGCCAGGTAGGAGGAGGATGGATCATCCTAGATCAGTAGCCGCTCCGCACAAACAGGACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR GCA 72 bp GATAGAGGCCTCAAACAGCTTTACCACAGTGGGGCCTaGTTGCCTCTCAAGCTCCCTATGGGGTTCCAAGGA +
Preference number: 3 (lower is better)
Translates to: DRGLKQLYHSGA*LPLKLPMGFQG
Trigger: TCCTTGGAACCCCATAGGGAGCTTGAGAGGCAAGCAGGCCCCACTGTGGTAAAGCTGTTTGAGGCCTCTATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 72 bp CCCTGGATGAGAGAGAGAGGGAGACAAGGGGAGCTCTaGTGTTCTCAGGGTAACAGAGCTACTTGCTGGGAA +
Preference number: 3 (lower is better)
Translates to: PWMRERGRQGEL*CSQGNRATCWE
Trigger: TTCCCAGCAAGTAGCTCTGTTACCCTGAGAACACCAGAGCTCCCCTTGTCTCCCTCTCTCTCTCATCCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CCA 72 bp TGTGGCAGCTGGACTCATGGAGTCCTGACCTCTGACTaGTACGAGGCAATCCAGGATAGCATTGAGAGCTCC +
Preference number: 3 (lower is better)
Translates to: CGSWTHGVLTSD*YEAIQDSIESS
Trigger: GGAGCTCTCAATGCTATCCTGGATTGCCTCGTACCAGTCAGAGGTCAGGACTCCATGAGTCCAGCTGCCACA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR-3UTR CAA 90 bp TGTAGACCAAAGAGGTGTCACCTCCAAGCTGAACCCTTTGTGGCAGCTGGACTCCCAACCATGAAGCATTaGGAAGGCCCAGGCCCATAC +
Preference number: 3 (lower is better)
Translates to: CRPKRCHLQAEPFVAAGLPTMKH*EGPGPY
Trigger: GTATGGGCCTGGGCCTTCCAAATGCTTCATGGTTGG...GAGTCCAGCTGCCACAAAGGGTTCAGCTTGGAGGTGACACCTCTTTGGTCTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CCA 72 bp GTGTTTATATATGAATCAAAACATAAAAGGCCCTCCTaGGTGCGCAGGGTGCCAGGCTGCCCTGCTGGGAGG +
Preference number: 3 (lower is better)
Translates to: VFIYESKHKRPS*VRRVPGCPAGR
Trigger: CCTCCCAGCAGGGCAGCCTGGCACCCTGCGCACCCAGGAGGGCCTTTTATGTTTTGATTCATATATAAACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CCA 72 bp AGCAGCTGCCCCCAGAGAAACCGAGGGCAGAAGCCTTaGCACCCTCCAAAAATTATTTCAAGGAAGCCACCA +
Preference number: 3 (lower is better)
Translates to: SSCPQRNRGQKP*HPPKIISRKPP
Trigger: TGGTGGCTTCCTTGAAATAATTTTTGGAGGGTGCCAAGGCTTCTGCCCTCGGTTTCTCTGGGGGCAGCTGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR TCA 72 bp AGCCACCTCACAAAGACCCCAGTGGATGGTCAGGTCTaGTGTGACACTCACTCGTGTGAAATCTTCCTCTGC +
Preference number: 3 (lower is better)
Translates to: SHLTKTPVDGQV*CDTHSCEIFLC
Trigger: GCAGAGGAAGATTTCACACGAGTGAGTGTCACATCAGACCTGACCATCCACTGGGGTCTTTGTGAGGTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR-3UTR CAA 90 bp CATTGCTTCTCTTTAGGTGTTTCCTCAGGGCTGGAGACAAGGATGCTGAGGGACGGGCTGGTAGCACTCTaGCCCAACCATGAAGCATTT +
Preference number: 3 (lower is better)
Translates to: HCFSLGVSSGLETRMLRDGLVAL*PNHEAF
Trigger: AAATGCTTCATGGTTGGGCAAGAGTGCTACCAGCCC...GTCCCTCAGCATCCTTGTCTCCAGCCCTGAGGAAACACCTAAAGAGAAGCAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR-3UTR CAA 90 bp AGGTGTGAGGATGAAGTGATCCAGGCTCCATGTGCATCTCTCAGGGGCTTTCTTCAGAGATCCCTGGTTTaGGGTTCAGAGTGTCAGCAC +
Preference number: 3 (lower is better)
Translates to: RCEDEVIQAPCASLRGFLQRSLV*GSECQH
Trigger: GTGCTGACACTCTGAACCCAAAACCAGGGATCTCTG...AAGAAAGCCCCTGAGAGATGCACATGGAGCCTGGATCACTTCATCCTCACACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CCA 72 bp GAGCTCTGGTGTTCTCAGGGTAACAGAGCTACTTGCTaGGAAAGTCACAAACAGGTGTGTGAGGCAGGAGAT +
Preference number: 3 (lower is better)
Translates to: ELWCSQGNRATC*ESHKQVCEAGD
Trigger: ATCTCCTGCCTCACACACCTGTTTGTGACTTTCCCAGCAAGTAGCTCTGTTACCCTGAGAACACCAGAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CCA 72 bp GCTGCTCTAGTCCTAGCTCACCATGCTCAGAGGCCATaGCTTGTAAACTGGCCGGTGTCAAGCAAATTACAA +
Preference number: 3 (lower is better)
Translates to: AALVLAHHAQRP*LVNWPVSSKLQ
Trigger: TTGTAATTTGCTTGACACCGGCCAGTTTACAAGCCATGGCCTCTGAGCATGGTGAGCTAGGACTAGAGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR TCA 72 bp GCCAACCGGAATGAGCAGGACCCAGGAGGCATTTATTaGAAACACAGCATTCAAAACATGGCAGCTATGGCC +
Preference number: 3 (lower is better)
Translates to: ANRNEQDPGGIY*KHSIQNMAAMA
Trigger: GGCCATAGCTGCCATGTTTTGAATGCTGTGTTTTCAATAAATGCCTCCTGGGTCCTGCTCATTCCGGTTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR TCA 72 bp CAGAGCTACTTGCTGGGAAAGTCACAAACAGGTGTGTaGGGCAGGAGATCATGGGTTTATTGTTCAGTCCCA +
Preference number: 3 (lower is better)
Translates to: QSYLLGKSQTGV*GRRSWVYCSVP
Trigger: TGGGACTGAACAATAAACCCATGATCTCCTGCCTCACACACCTGTTTGTGACTTTCCCAGCAAGTAGCTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR GCA 72 bp GGAAGCTACCCTGCTCAAGTGTCAGAGATTAAAGGGTaGATAGAAACCAGGATGATGGTCAGTCATCCTTCC +
Preference number: 3 (lower is better)
Translates to: GSYPAQVSEIKG*IETRMMVSHPS
Trigger: GGAAGGATGACTGACCATCATCCTGGTTTCTATGCACCCTTTAATCTCTGACACTTGAGCAGGGTAGCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR GCA 72 bp AACAGGCAGGGTGACAGGCTCAGCAGGGATTCTGGCTaGTCAGAGCTGGCTCTGTGTATCATAAATAATTTA +
Preference number: 3 (lower is better)
Translates to: NRQGDRLSRDSG*SELALCIINNL
Trigger: TAAATTATTTATGATACACAGAGCCAGCTCTGAGCAGCCAGAATCCCTGCTGAGCCTGTCACCCTGCCTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 72 bp ATAAGGAGACCTTGCTTAAACCAACATGAGCAAGGGTaGAACGAGGCCCAGGTCTTCTCATCAAAGCCACAA +
Preference number: 3 (lower is better)
Translates to: IRRPCLNQHEQG*NEAQVFSSKPQ
Trigger: TTGTGGCTTTGATGAGAAGACCTGGGCCTCGTTCCACCCTTGCTCATGTTGGTTTAAGCAAGGTCTCCTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CCA 72 bp AAAACACAGCATTCAAAACATGGCAGCTATGGCCAGTaGTGGTTACAGTTGTTAGGGTCGCTGGACAATCAC +
Preference number: 3 (lower is better)
Translates to: KTQHSKHGSYGQ*WLQLLGSLDNH
Trigger: GTGATTGTCCAGCGACCCTAACAACTGTAACCACCACTGGCCATAGCTGCCATGTTTTGAATGCTGTGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CCA 72 bp TTTATTGAAAACACAGCATTCAAAACATGGCAGCTATaGCCAGTGGTGGTTACAGTTGTTAGGGTCGCTGGA +
Preference number: 3 (lower is better)
Translates to: FIENTAFKTWQL*PVVVTVVRVAG
Trigger: TCCAGCGACCCTAACAACTGTAACCACCACTGGCCATAGCTGCCATGTTTTGAATGCTGTGTTTTCAATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR TCA 72 bp AAAATGCAGAAATTAACACCATATTGTCAGCTTCTTTaGGATCCACAATACACAGGAGAGGACGCGCAGACA +
Preference number: 3 (lower is better)
Translates to: KMQKLTPYCQLL*DPQYTGEDAQT
Trigger: TGTCTGCGCGTCCTCTCCTGTGTATTGTGGATCTCAAAGAAGCTGACAATATGGTGTTAATTTCTGCATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp GCCAACAGTTGGGGCGAGATGGGCGGCTGCTGCCTGATGCAGGGAGCCGGGCCCTACTCGACGGCCGCCTaGCACGGGCGGCACAGCTTG +
Preference number: 4 (lower is better)
Translates to: ANSWGEMGGCCLMQGAGPYSTAA*HGRHSL
Trigger: CAAGCTGTGCCGCCCGTGCCAGGCGGCCGTCGAGTA...GGGCCCGGCTCCCTGCATCAGGCAGCAGCCGCCCATCTCGCCCCAACTGTTGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp CTAAGACAAGTTGTTGCCAGCTTCAGGGGGCGGGGCCGAGCCCGGCCCATCTGCAGGCAGCCCCCGGGGTaGAGGGTTCGCTGGGCCCAT +
Preference number: 4 (lower is better)
Translates to: LRQVVASFRGRGRARPICRQPPG*RVRWAH
Trigger: ATGGGCCCAGCGAACCCTTCACCCCGGGGGCTGCCT...GCAGATGGGCCGGGCTCGGCCCCGCCCCCTGAAGCTGGCAACAACTTGTCTTAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp GAGTCTGCTCTGCTCGGGCCAGCGTGGGCCCCAGACGCAGACGTGAGCAGTCTCTACTCGACGGCCGCCTaGCACGGGCGGCACAGCTTG +
Preference number: 4 (lower is better)
Translates to: ESALLGPAWAPDADVSSLYSTAA*HGRHSL
Trigger: CAAGCTGTGCCGCCCGTGCCAGGCGGCCGTCGAGTA...GAGACTGCTCACGTCTGCGTCTGGGGCCCACGCTGGCCCGAGCAGAGCAGACTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp TCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGTGGCTGGACACGCTCTGCCCATGGGCCTaGTCAGCCTCCCGACGCCGG +
Preference number: 4 (lower is better)
Translates to: SSVLQQACSALSRQWLDTLCPWA*SASRRR
Trigger: CCGGCGTCGGGAGGCTGACCAGGCCCATGGGCAGAG...CGTGTCCAGCCACTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GGGAGCCACCAGAGGGCAGCATGCCAGGTGGGCGGAGCATGGGCCTATGGTCCAGGGCCCAGAGGCAGGTaGAGAAGGCATCGATCCGCC +
Preference number: 4 (lower is better)
Translates to: GSHQRAACQVGGAWAYGPGPRGR*RRHRSA
Trigger: GGCGGATCGATGCCTTCTCCACCTGCCTCTGGGCCC...TGGACCATAGGCCCATGCTCCGCCCACCTGGCATGCTGCCCTCTGGTGGCTCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR TCA 90 bp AGGCCAGAAGCGGTGGCAGTGGTGAGCCAGTACAGGCCACCTGGGGAGCACCGAGCCGGAACTGGTGGCTaGGAAGCAGGGCACGCAGCT +
Preference number: 4 (lower is better)
Translates to: RPEAVAVVSQYRPPGEHRAGTGG*EAGHAA
Trigger: AGCTGCGTGCCCTGCTTCTCAGCCACCAGTTCCGGC...TCGGTGCTCCCCAGGTGGCCTGTACTGGCTCACCACTGCCACCGCTTCTGGCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR TCA 90 bp AGGCCAACGCTCCTCCTCCTCCCTCATGGGACAGGATGTGCTCCAGCGTGCTCCCGATCCGCCGGAGCCTaGTACGGCCAGCCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: RPTLLLLPHGTGCAPACSRSAGA*YGQPAA
Trigger: TGCTGCTGGCTGGCCGTATCAGGCTCCGGCGGATCG...GGAGCACGCTGGAGCACATCCTGTCCCATGAGGGAGGAGGAGGAGCGTTGGCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GAGTCTGCTCTGCTCGGGCCAGCGTGGGCCCCAGACGCAGACGTGAGCAGTCTCCGGCACAGCAGGACCTaGCTGCTCACCCACTGCTGT +
Preference number: 4 (lower is better)
Translates to: ESALLGPAWAPDADVSSLRHSRT*LLTHCC
Trigger: ACAGCAGTGGGTGAGCAGCCAGGTCCTGCTGTGCCG...GAGACTGCTCACGTCTGCGTCTGGGGCCCACGCTGGCCCGAGCAGAGCAGACTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp TGGGCGCAGACAGAGGGCACGGCGGGCGGGATGGACAGGCTGCCTGGGGATGGAATCTTGGTGGTCTGGTaGTGGCTGCACCTTCGGCAC +
Preference number: 4 (lower is better)
Translates to: WAQTEGTAGGMDRLPGDGILVVW*WLHLRH
Trigger: GTGCCGAAGGTGCAGCCACCACCAGACCACCAAGAT...TCCATCCCCAGGCAGCCTGTCCATCCCGCCCGCCGTGCCCTCTGTCTGCGCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp TGGGCGCAGACAGAGGGCACGGCGGGCGGGATGGACAGGCTGCCTGGGGATGGACCACTGCCACAATGCTaGTCTGGTGGCTCTGCCCAA +
Preference number: 4 (lower is better)
Translates to: WAQTEGTAGGMDRLPGDGPLPQC*SGGSAQ
Trigger: TTGGGCAGAGCCACCAGACCAGCATTGTGGCAGTGG...TCCATCCCCAGGCAGCCTGTCCATCCCGCCCGCCGTGCCCTCTGTCTGCGCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp TGGTGGGGCTCTGCAGCAGACCTCTGGTGTCTCGGAGGCAGCAGACGGGCACAGGGGCCCAGAGGCAGGTaGAGAAGGCATCGATCCGCC +
Preference number: 4 (lower is better)
Translates to: WWGSAADLWCLGGSRRAQGPRGR*RRHRSA
Trigger: GGCGGATCGATGCCTTCTCCACCTGCCTCTGGGCCC...CTGTGCCCGTCTGCTGCCTCCGAGACACCAGAGGTCTGCTGCAGAGCCCCACCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp GTCAGGGACTTGACCCAGGAGGTCAAGGCAGAGACAGAGCCCCTCGGGGAGGGAGCCGGAACTGGTGGCTaGGAAGCAGGGCACGCAGCT +
Preference number: 4 (lower is better)
Translates to: VRDLTQEVKAETEPLGEGAGTGG*EAGHAA
Trigger: AGCTGCGTGCCCTGCTTCTCAGCCACCAGTTCCGGC...TCCCTCCCCGAGGGGCTCTGTCTCTGCCTTGACCTCCTGGGTCAAGTCCCTGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp AGAGACAGAGCCCCTCGGGGAGGGATCTCAGCGCCAGTGTCGGAAGCAGCATGCGCCGGAACTGGTGGCTaGGAAGCAGGGCACGCAGCT +
Preference number: 4 (lower is better)
Translates to: RDRAPRGGISAPVSEAACAGTGG*EAGHAA
Trigger: AGCTGCGTGCCCTGCTTCTCAGCCACCAGTTCCGGC...GCATGCTGCTTCCGACACTGGCGCTGAGATCCCTCCCCGAGGGGCTCTGTCTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp AGGCCAGAAGCGGTGGCAGTGGTGAGCCAGTACAGGCCACCTGGGGAGCACCGAGGGCACGGAGCAGGATaGCCTGGAATGGGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: RPEAVAVVSQYRPPGEHRGHGAG*PGMGPS
Trigger: TGAAGGCCCCATTCCAGGTCATCCTGCTCCGTGCCC...TCGGTGCTCCCCAGGTGGCCTGTACTGGCTCACCACTGCCACCGCTTCTGGCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR TCA 90 bp CCCAGGAGGTCAAGGCAGAGACAGAGCCCCTCGGGGAGGGATCTCAGCGCCAGTGGGCACGGAGCAGGATaGCCTGGAATGGGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: PRRSRQRQSPSGRDLSASGHGAG*PGMGPS
Trigger: TGAAGGCCCCATTCCAGGTCATCCTGCTCCGTGCCC...ACTGGCGCTGAGATCCCTCCCCGAGGGGCTCTGTCTCTGCCTTGACCTCCTGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp CAATGTGACTACATGGGCCTAGGTCAGGCGGCCTGTGTCTGCCTGCACCCAGCAAGGCAGCCCCCGGGGTaGAGGGTTCGCTGGGCCCAT +
Preference number: 4 (lower is better)
Translates to: QCDYMGLGQAACVCLHPARQPPG*RVRWAH
Trigger: ATGGGCCCAGCGAACCCTTCACCCCGGGGGCTGCCT...TGCTGGGTGCAGGCAGACACAGGCCGCCTGACCTAGGCCCATGTAGTCACATTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
CDS-3UTR GCA 90 bp CCACCAGAGGGCAGCATGCCAGGTGGGCGGAGCATGGGCCTATGGTCCAGATGGAGGCCGCAGAACTGTTaGCCCCAGGAGGTAGGGCTG +
Preference number: 4 (lower is better)
Translates to: PPEGSMPGGRSMGLWSRWRPQNC*PQEVGL
Trigger: CAGCCCTACCTCCTGGGGGCAACAGTTCTGCGGCCT...CCATCTGGACCATAGGCCCATGCTCCGCCCACCTGGCATGCTGCCCTCTGGTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR GCA 90 bp TCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGTGGCTGGACACGAGGCCGCAGAACTGTTaGCCCCAGGAGGTAGGGCTG +
Preference number: 4 (lower is better)
Translates to: SSVLQQACSALSRQWLDTRPQNC*PQEVGL
Trigger: CAGCCCTACCTCCTGGGGGCAACAGTTCTGCGGCCT...CGTGTCCAGCCACTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CAATGTGACTACATGGGCCTAGGTCAGGCGGCCTGTGTCTGCCTGCACCCAGCACTCTGCCCATGGGCCTaGTCAGCCTCCCGACGCCGG +
Preference number: 4 (lower is better)
Translates to: QCDYMGLGQAACVCLHPALCPWA*SASRRR
Trigger: CCGGCGTCGGGAGGCTGACCAGGCCCATGGGCAGAG...TGCTGGGTGCAGGCAGACACAGGCCGCCTGACCTAGGCCCATGTAGTCACATTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
CDS-3UTR CCA 90 bp GGGCCAGCGTGGGCCCCAGACGCAGACGTGAGCAGTCTCCCTCCCTCCTTTCTCCTGAAACTCTGCCCATaGGCCTGGTCAGCCTCCCGA +
Preference number: 4 (lower is better)
Translates to: GPAWAPDADVSSLPPSFLLKLCP*AWSASR
Trigger: TCGGGAGGCTGACCAGGCCCATGGGCAGAGTTTCAG...GAGAAAGGAGGGAGGGAGACTGCTCACGTCTGCGTCTGGGGCCCACGCTGGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp GACAGGATGTGCTCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGGGGCCCAGAGGCAGGTaGAGAAGGCATCGATCCGCC +
Preference number: 4 (lower is better)
Translates to: DRMCSSVLQQACSALSRQGPRGR*RRHRSA
Trigger: GGCGGATCGATGCCTTCTCCACCTGCCTCTGGGCCC...CTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGAGCACATCCTGTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp TGGTGGGGCTCTGCAGCAGACCTCTGGTGTCTCGGAGGCAGCAGACGGGCACAGGGGCCGGAACCTCCGTaGGCCTGTCGATTTCCTCGT +
Preference number: 4 (lower is better)
Translates to: WWGSAADLWCLGGSRRAQGPEPP*ACRFPR
Trigger: ACGAGGAAATCGACAGGCCCACGGAGGTTCCGGCCC...CTGTGCCCGTCTGCTGCCTCCGAGACACCAGAGGTCTGCTGCAGAGCCCCACCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GACAGGATGTGCTCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGAGACACCCGAGACGGTaGCCGGCTCCCGCTGAACAG +
Preference number: 4 (lower is better)
Translates to: DRMCSSVLQQACSALSRQRHPRR*PAPAEQ
Trigger: CTGTTCAGCGGGAGCCGGCCACCGTCTCGGGTGTCT...CTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGAGCACATCCTGTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp CAGGGAGGGCTGAAGGCATCTGCTTCAAAGCACGTGCCTCACCTGGCAACAGATGCGAGAGGGCCCGACTaGGGCGGCCTGGCAGTGAGG +
Preference number: 4 (lower is better)
Translates to: QGGLKASASKHVPHLATDARGPD*GGLAVR
Trigger: CCTCACTGCCAGGCCGCCTCAGTCGGGCCCTCTCGC...ATCTGTTGCCAGGTGAGGCACGTGCTTTGAAGCAGATGCCTTCAGCCCTCCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp AGGCCAGAAGCGGTGGCAGTGGTGAGCCAGTACAGGCCACCTGGGGAGCACCGATCACTGCTGCTTCTCTaGCCTTCGGGGCCGGAACCT +
Preference number: 4 (lower is better)
Translates to: RPEAVAVVSQYRPPGEHRSLLLL*PSGPEP
Trigger: AGGTTCCGGCCCCGAAGGTCAGAGAAGCAGCAGTGA...TCGGTGCTCCCCAGGTGGCCTGTACTGGCTCACCACTGCCACCGCTTCTGGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR GCA 90 bp TGGGCGCAGACAGAGGGCACGGCGGGCGGGATGGACAGGCTGCCTGGGGATGGAGACAGTCCCAACAGTTaGGATTCCCATAGGGCACCA +
Preference number: 4 (lower is better)
Translates to: WAQTEGTAGGMDRLPGDGDSPNS*DSHRAP
Trigger: TGGTGCCCTATGGGAATCGCAACTGTTGGGACTGTC...TCCATCCCCAGGCAGCCTGTCCATCCCGCCCGCCGTGCCCTCTGTCTGCGCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR GCA 90 bp CCTCCAGGAACGTTCTCTCTGCATGGAGGAGCTGGGGTCCGCTTCTCTGAAGGCCCACTGCTGTGGCTGTaGAGGGTCCCGGGGACTGGG +
Preference number: 4 (lower is better)
Translates to: PPGTFSLHGGAGVRFSEGPLLWL*RVPGTG
Trigger: CCCAGTCCCCGGGACCCTGCACAGCCACAGCAGTGG...GCCTTCAGAGAAGCGGACCCCAGCTCCTCCATGCAGAGAGAACGTTCCTGGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
CDS-3UTR GCA 90 bp AGGCCAGAAGCGGTGGCAGTGGTGAGCCAGTACAGGCCACCTGGGGAGCACCGATGGTCTGGTGGTGGCTaGACCTTCGGCACAGCAGGA +
Preference number: 4 (lower is better)
Translates to: RPEAVAVVSQYRPPGEHRWSGGG*TFGTAG
Trigger: TCCTGCTGTGCCGAAGGTGCAGCCACCACCAGACCA...TCGGTGCTCCCCAGGTGGCCTGTACTGGCTCACCACTGCCACCGCTTCTGGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR GCA 90 bp CCCAGGAGGTCAAGGCAGAGACAGAGCCCCTCGGGGAGGGATCTCAGCGCCAGTGGTGAGCAGGCCCACTaGCACAATGCTGGTCTGGTG +
Preference number: 4 (lower is better)
Translates to: PRRSRQRQSPSGRDLSASGEQAH*HNAGLV
Trigger: CACCAGACCAGCATTGTGGCAGTGGGCCTGCTCACC...ACTGGCGCTGAGATCCCTCCCCGAGGGGCTCTGTCTCTGCCTTGACCTCCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp TGGGCGCAGACAGAGGGCACGGCGGGCGGGATGGACAGGCTGCCTGGGGATGGAGACCATTGTGTGTGTTaGCTTCACCCTCCGCGCAAT +
Preference number: 4 (lower is better)
Translates to: WAQTEGTAGGMDRLPGDGDHCVC*LHPPRN
Trigger: ATTGCGCGGAGGGTGAAGCCAACACACACAATGGTC...TCCATCCCCAGGCAGCCTGTCCATCCCGCCCGCCGTGCCCTCTGTCTGCGCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp GGCCTGCTCCAGGGCAAGGGTTACTGGAGTCTGCTCTGCTCGGGCCAGCGTGGGAGCAGGGCACGCAGCTaGCGGTTCTGGTGTTTGATG +
Preference number: 4 (lower is better)
Translates to: GLLQGKGYWSLLCSGQRGSRARS*RFWCLM
Trigger: CATCAAACACCAGAACCGCCAGCTGCGTGCCCTGCT...CCCACGCTGGCCCGAGCAGAGCAGACTCCAGTAACCCTTGCCCTGGAGCAGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp TTACTGGAGTCTGCTCTGCTCGGGCCAGCGTGGGCCCCAGACGCAGACGTGAGCGCCACAATGCTGGTCTaGTGGCTCTGCCCAAAGGCC +
Preference number: 4 (lower is better)
Translates to: LLESALLGPAWAPDADVSATMLV*WLCPKA
Trigger: GGCCTTTGGGCAGAGCCACCAGACCAGCATTGTGGC...GCTCACGTCTGCGTCTGGGGCCCACGCTGGCCCGAGCAGAGCAGACTCCAGTAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp TGTGCTCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGTGGCTGGCAGCCAGGCTGGGGCTaGAAGGAAAAAGGCTGGCAG +
Preference number: 4 (lower is better)
Translates to: CAPACSSKPAVPSAGSGWQPGWG*KEKGWQ
Trigger: CTGCCAGCCTTTTTCCTTCCAGCCCCAGCCTGGCTG...CCAGCCACTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGAGCACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CAATGTGACTACATGGGCCTAGGTCAGGCGGCCTGTGTCTGCCTGCACCCAGCATGGAGGCCACGGAGCTaGCCACGGAAGGTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: QCDYMGLGQAACVCLHPAWRPRS*PRKVLG
Trigger: CCCCAGCACCTTCCGTGGCCAGCTCCGTGGCCTCCA...TGCTGGGTGCAGGCAGACACAGGCCGCCTGACCTAGGCCCATGTAGTCACATTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
CDS-3UTR TCA 90 bp AGTGGGGCCAACCTAGGCATCCCCAGTGTCTGCTCTAAGCACAGGAGCCCTGGGGGGCACGGAGCAGGATaGCCTGGAATGGGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: SGANLGIPSVCSKHRSPGGHGAG*PGMGPS
Trigger: TGAAGGCCCCATTCCAGGTCATCCTGCTCCGTGCCC...CCCAGGGCTCCTGTGCTTAGAGCAGACACTGGGGATGCCTAGGTTGGCCCCACT
63% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
CDS-3UTR TCA 90 bp GTGAGGCAGGAGATCATGGGTTTATTGTTCAGTCCCAGGCTCCCTGCTGCCCAGAGGCAGCCCCCGGGGTaGAGGGTTCGCTGGGCCCAT +
Preference number: 4 (lower is better)
Translates to: VRQEIMGLLFSPRLPAAQRQPPG*RVRWAH
Trigger: ATGGGCCCAGCGAACCCTTCACCCCGGGGGCTGCCT...CTGGGCAGCAGGGAGCCTGGGACTGAACAATAAACCCATGATCTCCTGCCTCAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp AGAGGTGTCACCTCCAAGCTGAACCCTTTGTGGCAGCTGGACTCATGGAGTCCTGCGAGAGGGCCCGACTaGGGCGGCCTGGCAGTGAGG +
Preference number: 4 (lower is better)
Translates to: RGVTSKLNPLWQLDSWSPARGPD*GGLAVR
Trigger: CCTCACTGCCAGGCCGCCTCAGTCGGGCCCTCTCGC...AGGACTCCATGAGTCCAGCTGCCACAAAGGGTTCAGCTTGGAGGTGACACCTCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp CTAGAGCTGGCAGGAAGCTATGGGGCTATGACAGGGTCTCAGGCCAGAAGCGGTCCACTGCTGTGGCTGTaGAGGGTCCCGGGGACTGGG +
Preference number: 4 (lower is better)
Translates to: LELAGSYGAMTGSQARSGPLLWL*RVPGTG
Trigger: CCCAGTCCCCGGGACCCTGCACAGCCACAGCAGTGG...ACCGCTTCTGGCCTGAGACCCTGTCATAGCCCCATAGCTTCCTGCCAGCTCTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR GCA 90 bp CCCTGCCACAGCTACAGTAGCAGTAGTGTCCCTGGGGCCAGGCAAGCCTGTCAGAGGCCGCAGAACTGTTaGCCCCAGGAGGTAGGGCTG +
Preference number: 4 (lower is better)
Translates to: PCHSYSSSSVPGARQACQRPQNC*PQEVGL
Trigger: CAGCCCTACCTCCTGGGGGCAACAGTTCTGCGGCCT...CTGACAGGCTTGCCTGGCCCCAGGGACACTACTGCTACTGTAGCTGTGGCAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CGAGATGGGCGGCTGCTGCCTGATGCAGGGAGCCGGGCCCTCTGGAGGGAACAGACGCTGCTCACCACGTaGTTCAGGTGTTCCATGTAC +
Preference number: 4 (lower is better)
Translates to: RDGRLLPDAGSRALWREQTLLTT*FRCSMY
Trigger: GTACATGGAACACCTGAACCACGTGGTGAGCAGCGT...CTGTTCCCTCCAGAGGGCCCGGCTCCCTGCATCAGGCAGCAGCCGCCCATCTCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CGTAGGCCAGTTCCTTGGAGGAAAGAGACAGGAAGGCGTTCCTCGTCCTCTCAGCTCTGCCCATGGGCCTaGTCAGCCTCCCGACGCCGG +
Preference number: 4 (lower is better)
Translates to: RRPVPWRKETGRRSSSSQLCPWA*SASRRR
Trigger: CCGGCGTCGGGAGGCTGACCAGGCCCATGGGCAGAG...CTGAGAGGACGAGGAACGCCTTCCTGTCTCTTTCCTCCAAGGAACTGGCCTACG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp TACTACATGACACGGGCTTGCACTGGGCGCAGACAGAGGGCACGGCGGGCGGGACAGGATGACCTGGAATaGGGCCTTCACTGCCGAGGA +
Preference number: 4 (lower is better)
Translates to: YYMTRACTGRRQRARRAGQDDLE*GLHCRG
Trigger: TCCTCGGCAGTGAAGGCCCCATTCCAGGTCATCCTG...TCCCGCCCGCCGTGCCCTCTGTCTGCGCCCAGTGCAAGCCCGTGTCATGTAGTA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp CAGGATGTGCTCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGTGCGGAGCAGGATGACCTaGAATGGGGCCTTCACTGCC +
Preference number: 4 (lower is better)
Translates to: QDVLQRAPASLQCPQQAVRSRMT*NGAFTA
Trigger: GGCAGTGAAGGCCCCATTCCAGGTCATCCTGCTCCG...CACTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGAGCACATCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CCCTGCCACAGCTACAGTAGCAGTAGTGTCCCTGGGGCCAGGCAAGCCTGTCAGGGGCCGGAACCTCCGTaGGCCTGTCGATTTCCTCGT +
Preference number: 4 (lower is better)
Translates to: PCHSYSSSSVPGARQACQGPEPP*ACRFPR
Trigger: ACGAGGAAATCGACAGGCCCACGGAGGTTCCGGCCC...CTGACAGGCTTGCCTGGCCCCAGGGACACTACTGCTACTGTAGCTGTGGCAGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GCCAACAGTTGGGGCGAGATGGGCGGCTGCTGCCTGATGCAGGGAGCCGGGCCCTGGAAGGAAAAAGGCTaGCAGAGTCTCCGGAGAAGT +
Preference number: 4 (lower is better)
Translates to: ANSWGEMGGCCLMQGAGPWKEKG*QSLRRS
Trigger: ACTTCTCCGGAGACTCTGCCAGCCTTTTTCCTTCCA...GGGCCCGGCTCCCTGCATCAGGCAGCAGCCGCCCATCTCGCCCCAACTGTTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GTCAGGGACTTGACCCAGGAGGTCAAGGCAGAGACAGAGCCCCTCGGGGAGGGAAGGCAGGAAGCCAGGTaGGGTGGGGATGAACAGGGA +
Preference number: 4 (lower is better)
Translates to: VRDLTQEVKAETEPLGEGRQEAR*GGDEQG
Trigger: TCCCTGTTCATCCCCACCCCACCTGGCTTCCTGCCT...TCCCTCCCCGAGGGGCTCTGTCTCTGCCTTGACCTCCTGGGTCAAGTCCCTGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp CGTAGGCCAGTTCCTTGGAGGAAAGAGACAGGAAGGCGTTCCTCGTCCTCTCAGCGATCCGCCGGAGCCTaGTACGGCCAGCCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: RRPVPWRKETGRRSSSSQRSAGA*YGQPAA
Trigger: TGCTGCTGGCTGGCCGTATCAGGCTCCGGCGGATCG...CTGAGAGGACGAGGAACGCCTTCCTGTCTCTTTCCTCCAAGGAACTGGCCTACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR TCA 90 bp AGGCCAACGCTCCTCCTCCTCCCTCATGGGACAGGATGTGCTCCAGCGTGCTCCGCTGAACAGGTATCCTaGGTCAGTCCGGGTCAGAGG +
Preference number: 4 (lower is better)
Translates to: RPTLLLLPHGTGCAPACSAEQVS*VSPGQR
Trigger: CCTCTGACCCGGACTGACTCAGGATACCTGTTCAGC...GGAGCACGCTGGAGCACATCCTGTCCCATGAGGGAGGAGGAGGAGCGTTGGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp TGGTGGGGCTCTGCAGCAGACCTCTGGTGTCTCGGAGGCAGCAGACGGGCACAGTGCTTCCCCAGGGGATaGGAACAGCAGCAGTTTCTG +
Preference number: 4 (lower is better)
Translates to: WWGSAADLWCLGGSRRAQCFPRG*EQQQFL
Trigger: CAGAAACTGCTGCTGTTCTCATCCCCTGGGGAAGCA...CTGTGCCCGTCTGCTGCCTCCGAGACACCAGAGGTCTGCTGCAGAGCCCCACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp CAATGTGACTACATGGGCCTAGGTCAGGCGGCCTGTGTCTGCCTGCACCCAGCAGGGGACTGGGCACGCTaGTCACCACGTGGTTCAGGT +
Preference number: 4 (lower is better)
Translates to: QCDYMGLGQAACVCLHPAGDWAR*SPRGSG
Trigger: ACCTGAACCACGTGGTGAGCAGCGTGCCCAGTCCCC...TGCTGGGTGCAGGCAGACACAGGCCGCCTGACCTAGGCCCATGTAGTCACATTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
CDS-3UTR GCA 90 bp CCCTGCCACAGCTACAGTAGCAGTAGTGTCCCTGGGGCCAGGCAAGCCTGTCAGTGGTCTGGTGGTGGCTaGACCTTCGGCACAGCAGGA +
Preference number: 4 (lower is better)
Translates to: PCHSYSSSSVPGARQACQWSGGG*TFGTAG
Trigger: TCCTGCTGTGCCGAAGGTGCAGCCACCACCAGACCA...CTGACAGGCTTGCCTGGCCCCAGGGACACTACTGCTACTGTAGCTGTGGCAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp GGCCTGCTCCAGGGCAAGGGTTACTGGAGTCTGCTCTGCTCGGGCCAGCGTGGGAGCTTCTCTGTGGCATaGTCAGGCAATAGACCCAGC +
Preference number: 4 (lower is better)
Translates to: GLLQGKGYWSLLCSGQRGSFSVA*SGNRPS
Trigger: GCTGGGTCTATTGCCTGAGCATGCCACAGAGAAGCT...CCCACGCTGGCCCGAGCAGAGCAGACTCCAGTAACCCTTGCCCTGGAGCAGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR GCA 90 bp TGGTGGGGCTCTGCAGCAGACCTCTGGTGTCTCGGAGGCAGCAGACGGGCACAGGATCGGAACAGCTGCTaGTTGGTGAGAGGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: WWGSAADLWCLGGSRRAQDRNSC*LVRGRK
Trigger: CTTCCTGCCTCTCACCAAGCAGCAGCTGTTCCGATC...CTGTGCCCGTCTGCTGCCTCCGAGACACCAGAGGTCTGCTGCAGAGCCCCACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp AGAGACAGAGCCCCTCGGGGAGGGATCTCAGCGCCAGTGTCGGAAGCAGCATGCTTTCAGGTTGAGCCGTaGAGGGCTGATGAGGGGCCT +
Preference number: 4 (lower is better)
Translates to: RDRAPRGGISAPVSEAACFQVEP*RADEGP
Trigger: AGGCCCCTCATCAGCCCTGCACGGCTCAACCTGAAA...GCATGCTGCTTCCGACACTGGCGCTGAGATCCCTCCCCGAGGGGCTCTGTCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp AGTATCCCTCCAGGAACGTTCTCTCTGCATGGAGGAGCTGGGGTCCGCTTCTCTCAGGGTCCCGGGGACTaGGCACGCTGCTCACCACGT +
Preference number: 4 (lower is better)
Translates to: SIPPGTFSLHGGAGVRFSQGPGD*ARCSPR
Trigger: ACGTGGTGAGCAGCGTGCCCAGTCCCCGGGACCCTG...AGAGAAGCGGACCCCAGCTCCTCCATGCAGAGAGAACGTTCCTGGAGGGATACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
CDS-3UTR CCA 90 bp GTGACACTCACTCGTGTGAAATCTTCCTCTGCCCTCCCTGGGCTCCAGTGCAGACAGGGTCCCGGGGACTaGGCACGCTGCTCACCACGT +
Preference number: 4 (lower is better)
Translates to: VTLTRVKSSSALPGLQCRQGPGD*ARCSPR
Trigger: ACGTGGTGAGCAGCGTGCCCAGTCCCCGGGACCCTG...TCTGCACTGGAGCCCAGGGAGGGCAGAGGAAGATTTCACACGAGTGAGTGTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp TCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGTGGCTGGACACGTTGATCTTGGTGGTCTaGTGGTGGCTGCACCTTCGG +
Preference number: 4 (lower is better)
Translates to: SSVLQQACSALSRQWLDTLILVV*WWLHLR
Trigger: CCGAAGGTGCAGCCACCACCAGACCACCAAGATCAA...CGTGTCCAGCCACTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp TGGTGGGGCTCTGCAGCAGACCTCTGGTGTCTCGGAGGCAGCAGACGGGCACAGTTGATCTTGGTGGTCTaGTGGTGGCTGCACCTTCGG +
Preference number: 4 (lower is better)
Translates to: WWGSAADLWCLGGSRRAQLILVV*WWLHLR
Trigger: CCGAAGGTGCAGCCACCACCAGACCACCAAGATCAA...CTGTGCCCGTCTGCTGCCTCCGAGACACCAGAGGTCTGCTGCAGAGCCCCACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CAGGAAGGCGTTCCTCGTCCTCTCAGACAGCTGTACCCCACAAGGTCAGCAGCACGACGCCGGAACTGGTaGCTGAGAAGCAGGGCACGC +
Preference number: 4 (lower is better)
Translates to: QEGVPRPLRQLYPTRSAARRRNW*LRSRAR
Trigger: GCGTGCCCTGCTTCTCAGCCACCAGTTCCGGCGTCG...TGCTGCTGACCTTGTGGGGTACAGCTGTCTGAGAGGACGAGGAACGCCTTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp GTCAGGGACTTGACCCAGGAGGTCAAGGCAGAGACAGAGCCCCTCGGGGAGGGACGAGGATGTGACACTTaGGTAGGGCACAGCCAGGCT +
Preference number: 4 (lower is better)
Translates to: VRDLTQEVKAETEPLGEGRGCDT*VGHSQA
Trigger: AGCCTGGCTGTGCCCTACCCAAGTGTCACATCCTCG...TCCCTCCCCGAGGGGCTCTGTCTCTGCCTTGACCTCCTGGGTCAAGTCCCTGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp TGGGTGGACAGCAGGTATCCTGAGGTCAGGGACTTGACCCAGGAGGTCAAGGCAAGACACCCGAGACGGTaGCCGGCTCCCGCTGAACAG +
Preference number: 4 (lower is better)
Translates to: WVDSRYPEVRDLTQEVKARHPRR*PAPAEQ
Trigger: CTGTTCAGCGGGAGCCGGCCACCGTCTCGGGTGTCT...TGCCTTGACCTCCTGGGTCAAGTCCCTGACCTCAGGATACCTGCTGTCCACCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CAA 72 bp TCGCTGGACAATCACAATCTACTACATGACACGGGCTaGCACTGGGCGCAGACAGAGGGCACGGCGGGCGGG +
Preference number: 4 (lower is better)
Translates to: SLDNHNLLHDTG*HWAQTEGTAGG
Trigger: CCCGCCCGCCGTGCCCTCTGTCTGCGCCCAGTGCAAGCCCGTGTCATGTAGTAGATTGTGATTGTCCAGCGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR TCA 90 bp CCCTGCCACAGCTACAGTAGCAGTAGTGTCCCTGGGGCCAGGCAAGCCTGTCAGGCTGAACAGGTATCCTaGGTCAGTCCGGGTCAGAGG +
Preference number: 4 (lower is better)
Translates to: PCHSYSSSSVPGARQACQAEQVS*VSPGQR
Trigger: CCTCTGACCCGGACTGACTCAGGATACCTGTTCAGC...CTGACAGGCTTGCCTGGCCCCAGGGACACTACTGCTACTGTAGCTGTGGCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp AGGTCAAGGCAGAGACAGAGCCCCTCGGGGAGGGATCTCAGCGCCAGTGTCGGATTTGTGTCCCGAGTGTaGTTCCTCTGTGGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: RSRQRQSPSGRDLSASVGFVSRV*FLCGSW
Trigger: CCAGCTGCCACAGAGGAATCACACTCGGGACACAAA...TCCGACACTGGCGCTGAGATCCCTCCCCGAGGGGCTCTGTCTCTGCCTTGACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp ACAGGATGTGCTCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGTACGCAGGTGGAGGACTaGGACGACTCGTCCTCTTTC +
Preference number: 4 (lower is better)
Translates to: TGCAPACSSKPAVPSAGSTQVED*DDSSSF
Trigger: GAAAGAGGACGAGTCGTCTCAGTCCTCCACCTGCGT...ACTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGAGCACATCCTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp GAGAGCTCCCGGGACAGGAGTGGAGAGGTAAGGTCAGGGCTGCTTCCCTACAGTGGGAGTGGTCTCCTCTaGGCACCCTTTGGTGGTGGT +
Preference number: 4 (lower is better)
Translates to: ESSRDRSGEVRSGLLPYSGSGLL*APFGGG
Trigger: ACCACCACCAAAGGGTGCTCAGAGGAGACCACTCCC...ACTGTAGGGAAGCAGCCCTGACCTTACCTCTCCACTCCTGTCCCGGGAGCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp CTAAGACAAGTTGTTGCCAGCTTCAGGGGGCGGGGCCGAGCCCGGCCCATCTGCGTGAAAGCAGCCAGCTaGTTGATCTTGGTGGTCTGG +
Preference number: 4 (lower is better)
Translates to: LRQVVASFRGRGRARPICVKAAS*LILVVW
Trigger: CCAGACCACCAAGATCAAGCAGCTGGCTGCTTTCAC...GCAGATGGGCCGGGCTCGGCCCCGCCCCCTGAAGCTGGCAACAACTTGTCTTAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR GCA 90 bp TACTACATGACACGGGCTTGCACTGGGCGCAGACAGAGGGCACGGCGGGCGGGACACAGCTTGTACATCTaGTCCAAGTGGTGGCGGTAC +
Preference number: 4 (lower is better)
Translates to: YYMTRACTGRRQRARRAGHSLYI*SKWWRY
Trigger: GTACCGCCACCACTTGGAGCAGATGTACAAGCTGTG...TCCCGCCCGCCGTGCCCTCTGTCTGCGCCCAGTGCAAGCCCGTGTCATGTAGTA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR GCA 90 bp CCCAGGAGGTCAAGGCAGAGACAGAGCCCCTCGGGGAGGGATCTCAGCGCCAGTCACAGCTTGTACATCTaGTCCAAGTGGTGGCGGTAC +
Preference number: 4 (lower is better)
Translates to: PRRSRQRQSPSGRDLSASHSLYI*SKWWRY
Trigger: GTACCGCCACCACTTGGAGCAGATGTACAAGCTGTG...ACTGGCGCTGAGATCCCTCCCCGAGGGGCTCTGTCTCTGCCTTGACCTCCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp CCCAGGAGGTCAAGGCAGAGACAGAGCCCCTCGGGGAGGGATCTCAGCGCCAGTAGCTTCTCTGTGGCATaGTCAGGCAATAGACCCAGC +
Preference number: 4 (lower is better)
Translates to: PRRSRQRQSPSGRDLSASSFSVA*SGNRPS
Trigger: GCTGGGTCTATTGCCTGAGCATGCCACAGAGAAGCT...ACTGGCGCTGAGATCCCTCCCCGAGGGGCTCTGTCTCTGCCTTGACCTCCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp GGAAGCTATGGGGCTATGACAGGGTCTCAGGCCAGAAGCGGTGGCAGTGGTGAGGGTGAGCAGGCCCACTaGCACAATGCTGGTCTGGTG +
Preference number: 4 (lower is better)
Translates to: GSYGAMTGSQARSGGSGEGEQAH*HNAGLV
Trigger: CACCAGACCAGCATTGTGGCAGTGGGCCTGCTCACC...CTCACCACTGCCACCGCTTCTGGCCTGAGACCCTGTCATAGCCCCATAGCTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp TTACTGGAGTCTGCTCTGCTCGGGCCAGCGTGGGCCCCAGACGCAGACGTGAGCGGCACCAGTGTATCGTaGTTGCAGAACCAGCAGTTG +
Preference number: 4 (lower is better)
Translates to: LLESALLGPAWAPDADVSGTSVS*LQNQQL
Trigger: CAACTGCTGGTTCTGCAACCACGATACACTGGTGCC...GCTCACGTCTGCGTCTGGGGCCCACGCTGGCCCGAGCAGAGCAGACTCCAGTAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp GGCCTGCTCCAGGGCAAGGGTTACTGGAGTCTGCTCTGCTCGGGCCAGCGTGGGTTGTACTGCTCACAGTaGGGACAGTCCCAACAGTTG +
Preference number: 4 (lower is better)
Translates to: GLLQGKGYWSLLCSGQRGLYCSQ*GQSQQL
Trigger: CAACTGTTGGGACTGTCCCCACTGTGAGCAGTACAA...CCCACGCTGGCCCGAGCAGAGCAGACTCCAGTAACCCTTGCCCTGGAGCAGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp TCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGTGGCTGGACACGACGCTGCTCACCACGTaGTTCAGGTGTTCCATGTAC +
Preference number: 4 (lower is better)
Translates to: SSVLQQACSALSRQWLDTTLLTT*FRCSMY
Trigger: GTACATGGAACACCTGAACCACGTGGTGAGCAGCGT...CGTGTCCAGCCACTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GCAATCCAGGATAGCATTGAGAGCTCCCGGGACAGGAGTGGAGAGGTAAGGTCACAGGGTCCCGGGGACTaGGCACGCTGCTCACCACGT +
Preference number: 4 (lower is better)
Translates to: AIQDSIESSRDRSGEVRSQGPGD*ARCSPR
Trigger: ACGTGGTGAGCAGCGTGCCCAGTCCCCGGGACCCTG...TGACCTTACCTCTCCACTCCTGTCCCGGGAGCTCTCAATGCTATCCTGGATTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CAGGGAGGGCTGAAGGCATCTGCTTCAAAGCACGTGCCTCACCTGGCAACAGATCGACGCCGGAACTGGTaGCTGAGAAGCAGGGCACGC +
Preference number: 4 (lower is better)
Translates to: QGGLKASASKHVPHLATDRRRNW*LRSRAR
Trigger: GCGTGCCCTGCTTCTCAGCCACCAGTTCCGGCGTCG...ATCTGTTGCCAGGTGAGGCACGTGCTTTGAAGCAGATGCCTTCAGCCCTCCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp TTGGTCCCTGCCACAGCTACAGTAGCAGTAGTGTCCCTGGGGCCAGGCAAGCCTCTGAAACTCTGCCCATaGGCCTGGTCAGCCTCCCGA +
Preference number: 4 (lower is better)
Translates to: LVPATATVAVVSLGPGKPLKLCP*AWSASR
Trigger: TCGGGAGGCTGACCAGGCCCATGGGCAGAGTTTCAG...AGGCTTGCCTGGCCCCAGGGACACTACTGCTACTGTAGCTGTGGCAGGGACCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GAGAGCTCCCGGGACAGGAGTGGAGAGGTAAGGTCAGGGCTGCTTCCCTACAGTGCCACAATGCTGGTCTaGTGGCTCTGCCCAAAGGCC +
Preference number: 4 (lower is better)
Translates to: ESSRDRSGEVRSGLLPYSATMLV*WLCPKA
Trigger: GGCCTTTGGGCAGAGCCACCAGACCAGCATTGTGGC...ACTGTAGGGAAGCAGCCCTGACCTTACCTCTCCACTCCTGTCCCGGGAGCTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CCCTGCCACAGCTACAGTAGCAGTAGTGTCCCTGGGGCCAGGCAAGCCTGTCAGCCACTGCCACAATGCTaGTCTGGTGGCTCTGCCCAA +
Preference number: 4 (lower is better)
Translates to: PCHSYSSSSVPGARQACQPLPQC*SGGSAQ
Trigger: TTGGGCAGAGCCACCAGACCAGCATTGTGGCAGTGG...CTGACAGGCTTGCCTGGCCCCAGGGACACTACTGCTACTGTAGCTGTGGCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GGAACGTTCTCTCTGCATGGAGGAGCTGGGGTCCGCTTCTCTGAAGGCCTCTTTATGAGGGGCCTGCGGTaGCGCAAGGAGCCAGAGCTG +
Preference number: 4 (lower is better)
Translates to: GTFSLHGGAGVRFSEGLFMRGLR*RKEPEL
Trigger: CAGCTCTGGCTCCTTGCGCCACCGCAGGCCCCTCAT...AAAGAGGCCTTCAGAGAAGCGGACCCCAGCTCCTCCATGCAGAGAGAACGTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
CDS-3UTR TCA 90 bp TTCCTCTGCCCTCCCTGGGCTCCAGTGCAGAGGGTGAAAGAGCCGCACTTAGAGGGCGGTTCTGGTGTTTaGTGTAGTACTCGACGGCCG +
Preference number: 4 (lower is better)
Translates to: FLCPPWAPVQRVKEPHLEGGSGV*CSTRRP
Trigger: CGGCCGTCGAGTACTACATCAAACACCAGAACCGCC...CTCTAAGTGCGGCTCTTTCACCCTCTGCACTGGAGCCCAGGGAGGGCAGAGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR TCA 90 bp ACAGGATGTGCTCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGTTTTGTGTCCCGAGTGTaGTTCCTCTGTGGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: TGCAPACSSKPAVPSAGSFVSRV*FLCGSW
Trigger: CCAGCTGCCACAGAGGAATCACACTCGGGACACAAA...ACTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGAGCACATCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp CTTGGAGGAAAGAGACAGGAAGGCGTTCCTCGTCCTCTCAGACAGCTGTACCCCGGGGACTGGGCACGCTaGTCACCACGTGGTTCAGGT +
Preference number: 4 (lower is better)
Translates to: LGGKRQEGVPRPLRQLYPGDWAR*SPRGSG
Trigger: ACCTGAACCACGTGGTGAGCAGCGTGCCCAGTCCCC...GGGGTACAGCTGTCTGAGAGGACGAGGAACGCCTTCCTGTCTCTTTCCTCCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR GCA 90 bp AGGCAGGAGATCATGGGTTTATTGTTCAGTCCCAGGCTCCCTGCTGCCCAGCCCGGTGAGCAGGCCCACTaGCACAATGCTGGTCTGGTG +
Preference number: 4 (lower is better)
Translates to: RQEIMGLLFSPRLPAAQPGEQAH*HNAGLV
Trigger: CACCAGACCAGCATTGTGGCAGTGGGCCTGCTCACC...GGGCTGGGCAGCAGGGAGCCTGGGACTGAACAATAAACCCATGATCTCCTGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp TTGGTCCCTGCCACAGCTACAGTAGCAGTAGTGTCCCTGGGGCCAGGCAAGCCTGGAGATCGGAACAGCTaGTGCTTGGTGAGAGGCAGG +
Preference number: 4 (lower is better)
Translates to: LVPATATVAVVSLGPGKPGDRNS*CLVRGR
Trigger: CCTGCCTCTCACCAAGCAGCAGCTGTTCCGATCTCC...AGGCTTGCCTGGCCCCAGGGACACTACTGCTACTGTAGCTGTGGCAGGGACCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CAGGGAGGGCTGAAGGCATCTGCTTCAAAGCACGTGCCTCACCTGGCAACAGATCGGCACAGCAGGACCTaGCTGCTCACCCACTGCTGT +
Preference number: 4 (lower is better)
Translates to: QGGLKASASKHVPHLATDRHSRT*LLTHCC
Trigger: ACAGCAGTGGGTGAGCAGCCAGGTCCTGCTGTGCCG...ATCTGTTGCCAGGTGAGGCACGTGCTTTGAAGCAGATGCCTTCAGCCCTCCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GTGAGGCAGGAGATCATGGGTTTATTGTTCAGTCCCAGGCTCCCTGCTGCCCAGCGGCACAGCAGGACCTaGCTGCTCACCCACTGCTGT +
Preference number: 4 (lower is better)
Translates to: VRQEIMGLLFSPRLPAAQRHSRT*LLTHCC
Trigger: ACAGCAGTGGGTGAGCAGCCAGGTCCTGCTGTGCCG...CTGGGCAGCAGGGAGCCTGGGACTGAACAATAAACCCATGATCTCCTGCCTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CCACCAGAGGGCAGCATGCCAGGTGGGCGGAGCATGGGCCTATGGTCCAGATGGTACATCTGCTCCAAGTaGTGGCGGTACACCTCAATC +
Preference number: 4 (lower is better)
Translates to: PPEGSMPGGRSMGLWSRWYICSK*WRYTSI
Trigger: GATTGAGGTGTACCGCCACCACTTGGAGCAGATGTA...CCATCTGGACCATAGGCCCATGCTCCGCCCACCTGGCATGCTGCCCTCTGGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp CAGGATAGCATTGAGAGCTCCCGGGACAGGAGTGGAGAGGTAAGGTCAGGGCTGCGGAGCAGGATGACCTaGAATGGGGCCTTCACTGCC +
Preference number: 4 (lower is better)
Translates to: QDSIESSRDRSGEVRSGLRSRMT*NGAFTA
Trigger: GGCAGTGAAGGCCCCATTCCAGGTCATCCTGCTCCG...CAGCCCTGACCTTACCTCTCCACTCCTGTCCCGGGAGCTCTCAATGCTATCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GAGAGCTCCCGGGACAGGAGTGGAGAGGTAAGGTCAGGGCTGCTTCCCTACAGTCCACTGCCACAATGCTaGTCTGGTGGCTCTGCCCAA +
Preference number: 4 (lower is better)
Translates to: ESSRDRSGEVRSGLLPYSPLPQC*SGGSAQ
Trigger: TTGGGCAGAGCCACCAGACCAGCATTGTGGCAGTGG...ACTGTAGGGAAGCAGCCCTGACCTTACCTCTCCACTCCTGTCCCGGGAGCTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CTTGGAGGAAAGAGACAGGAAGGCGTTCCTCGTCCTCTCAGACAGCTGTACCCCGGGCCGGAACCTCCGTaGGCCTGTCGATTTCCTCGT +
Preference number: 4 (lower is better)
Translates to: LGGKRQEGVPRPLRQLYPGPEPP*ACRFPR
Trigger: ACGAGGAAATCGACAGGCCCACGGAGGTTCCGGCCC...GGGGTACAGCTGTCTGAGAGGACGAGGAACGCCTTCCTGTCTCTTTCCTCCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp CATCTGAACTGTGCAGCTCACGAGCAACTGGTGGGTCAGGCAGGGACCCTGGATAGGCAGGAAGCCAGGTaGGGTGGGGATGAACAGGGA +
Preference number: 4 (lower is better)
Translates to: HLNCAAHEQLVGQAGTLDRQEAR*GGDEQG
Trigger: TCCCTGTTCATCCCCACCCCACCTGGCTTCCTGCCT...ATCCAGGGTCCCTGCCTGACCCACCAGTTGCTCGTGAGCTGCACAGTTCAGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CGAGATGGGCGGCTGCTGCCTGATGCAGGGAGCCGGGCCCTCTGGAGGGAACAGAAGCAGGGAAGCTGCTaGACAGCAGAGAAAAGTAAT +
Preference number: 4 (lower is better)
Translates to: RDGRLLPDAGSRALWREQKQGSC*TAEKSN
Trigger: ATTACTTTTCTCTGCTGTCCAGCAGCTTCCCTGCTT...CTGTTCCCTCCAGAGGGCCCGGCTCCCTGCATCAGGCAGCAGCCGCCCATCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp AGAGGTGTCACCTCCAAGCTGAACCCTTTGTGGCAGCTGGACTCATGGAGTCCTATGAGGGGCCTGCGGTaGCGCAAGGAGCCAGAGCTG +
Preference number: 4 (lower is better)
Translates to: RGVTSKLNPLWQLDSWSPMRGLR*RKEPEL
Trigger: CAGCTCTGGCTCCTTGCGCCACCGCAGGCCCCTCAT...AGGACTCCATGAGTCCAGCTGCCACAAAGGGTTCAGCTTGGAGGTGACACCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GACAGGATGTGCTCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGTTCCTCTGTGGCAGCTaGGGAGACTCAATGAAGAGG +
Preference number: 4 (lower is better)
Translates to: DRMCSSVLQQACSALSRQFLCGS*GDSMKR
Trigger: CCTCTTCATTGAGTCTCCCCAGCTGCCACAGAGGAA...CTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGAGCACATCCTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GTCAGGGACTTGACCCAGGAGGTCAAGGCAGAGACAGAGCCCCTCGGGGAGGGATTCCTCTGTGGCAGCTaGGGAGACTCAATGAAGAGG +
Preference number: 4 (lower is better)
Translates to: VRDLTQEVKAETEPLGEGFLCGS*GDSMKR
Trigger: CCTCTTCATTGAGTCTCCCCAGCTGCCACAGAGGAA...TCCCTCCCCGAGGGGCTCTGTCTCTGCCTTGACCTCCTGGGTCAAGTCCCTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CAA 72 bp AAGGAGCCAGAGTCTACCCAGGGGCTGGTAGCACTCTaGCCCAACCATGAAGCATTTGGAAGGCCCAGGCCC +
Preference number: 4 (lower is better)
Translates to: KEPESTQGLVAL*PNHEAFGRPRP
Trigger: GGGCCTGGGCCTTCCAAATGCTTCATGGTTGGGCAAGAGTGCTACCAGCCCCTGGGTAGACTCTGGCTCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CAA 72 bp TGTTGGGTGGACAGCAGGTATCCTGAGGTCAGGGACTaGACCCAGGAGGTCAAGGCAGAGACAGAGCCCCTC +
Preference number: 4 (lower is better)
Translates to: CWVDSRYPEVRD*TQEVKAETEPL
Trigger: GAGGGGCTCTGTCTCTGCCTTGACCTCCTGGGTCAAGTCCCTGACCTCAGGATACCTGCTGTCCACCCAACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp AGGCCAACGCTCCTCCTCCTCCCTCATGGGACAGGATGTGCTCCAGCGTGCTCCTGCAGAACCAGCAGTTaGCCATTGTGTGTGTTGGCT +
Preference number: 4 (lower is better)
Translates to: RPTLLLLPHGTGCAPACSCRTSS*PLCVLA
Trigger: AGCCAACACACACAATGGTCAACTGCTGGTTCTGCA...GGAGCACGCTGGAGCACATCCTGTCCCATGAGGGAGGAGGAGGAGCGTTGGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp TGGGTGGACAGCAGGTATCCTGAGGTCAGGGACTTGACCCAGGAGGTCAAGGCAGGCGGTTCTGGTGTTTaGTGTAGTACTCGACGGCCG +
Preference number: 4 (lower is better)
Translates to: WVDSRYPEVRDLTQEVKAGGSGV*CSTRRP
Trigger: CGGCCGTCGAGTACTACATCAAACACCAGAACCGCC...TGCCTTGACCTCCTGGGTCAAGTCCCTGACCTCAGGATACCTGCTGTCCACCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp AGGGTAACAGAGCTACTTGCTGGGAAAGTCACAAACAGGTGTGTGAGGCAGGAGCGATCCGCCGGAGCCTaGTACGGCCAGCCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: RVTELLAGKVTNRCVRQERSAGA*YGQPAA
Trigger: TGCTGCTGGCTGGCCGTATCAGGCTCCGGCGGATCG...CTCCTGCCTCACACACCTGTTTGTGACTTTCCCAGCAAGTAGCTCTGTTACCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp TTCTCTTTAGGTGTTTCCTCAGGGCTGGAGACAAGGATGCTGAGGGACAATTTGGAGGCGGCCTGGCAGTaGGGAGGGGGAGACCCGACG +
Preference number: 4 (lower is better)
Translates to: FSLGVSSGLETRMLRDNLEAAWQ*GGGDPT
Trigger: CGTCGGGTCTCCCCCTCCTCACTGCCAGGCCGCCTC...CAAATTGTCCCTCAGCATCCTTGTCTCCAGCCCTGAGGAAACACCTAAAGAGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp TTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCAGTCTGTTGGGTGGACAGGAGGCGGCCTGGCAGTaGGGAGGGGGAGACCCGACG +
Preference number: 4 (lower is better)
Translates to: FRVSAPNTVDVCSLLGGQEAAWQ*GGGDPT
Trigger: CGTCGGGTCTCCCCCTCCTCACTGCCAGGCCGCCTC...CTGTCCACCCAACAGACTGCAAACATCAACTGTGTTTGGTGCTGACACTCTGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp TTGGTCCCTGCCACAGCTACAGTAGCAGTAGTGTCCCTGGGGCCAGGCAAGCCTTGCTTCCCCAGGGGATaGGAACAGCAGCAGTTTCTG +
Preference number: 4 (lower is better)
Translates to: LVPATATVAVVSLGPGKPCFPRG*EQQQFL
Trigger: CAGAAACTGCTGCTGTTCTCATCCCCTGGGGAAGCA...AGGCTTGCCTGGCCCCAGGGACACTACTGCTACTGTAGCTGTGGCAGGGACCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp AGAGACAGAGCCCCTCGGGGAGGGATCTCAGCGCCAGTGTCGGAAGCAGCATGCTTGTACTGCTCACAGTaGGGACAGTCCCAACAGTTG +
Preference number: 4 (lower is better)
Translates to: RDRAPRGGISAPVSEAACLYCSQ*GQSQQL
Trigger: CAACTGTTGGGACTGTCCCCACTGTGAGCAGTACAA...GCATGCTGCTTCCGACACTGGCGCTGAGATCCCTCCCCGAGGGGCTCTGTCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GGAAGCTATGGGGCTATGACAGGGTCTCAGGCCAGAAGCGGTGGCAGTGGTGAGTTGATCTTGGTGGTCTaGTGGTGGCTGCACCTTCGG +
Preference number: 4 (lower is better)
Translates to: GSYGAMTGSQARSGGSGELILVV*WWLHLR
Trigger: CCGAAGGTGCAGCCACCACCAGACCACCAAGATCAA...CTCACCACTGCCACCGCTTCTGGCCTGAGACCCTGTCATAGCCCCATAGCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp GTGAGGCAGGAGATCATGGGTTTATTGTTCAGTCCCAGGCTCCCTGCTGCCCAGGCCACAATGCTGGTCTaGTGGCTCTGCCCAAAGGCC +
Preference number: 4 (lower is better)
Translates to: VRQEIMGLLFSPRLPAAQATMLV*WLCPKA
Trigger: GGCCTTTGGGCAGAGCCACCAGACCAGCATTGTGGC...CTGGGCAGCAGGGAGCCTGGGACTGAACAATAAACCCATGATCTCCTGCCTCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp AAAAGCACCCAGAGCTTGAGAGACCACCTCCCAGCAGGGAGGGCTGAAGGCATCCGAGGATGTGACACTTaGGTAGGGCACAGCCAGGCT +
Preference number: 4 (lower is better)
Translates to: KSTQSLRDHLPAGRAEGIRGCDT*VGHSQA
Trigger: AGCCTGGCTGTGCCCTACCCAAGTGTCACATCCTCG...GATGCCTTCAGCCCTCCCTGCTGGGAGGTGGTCTCTCAAGCTCTGGGTGCTTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp CAGGATAGCATTGAGAGCTCCCGGGACAGGAGTGGAGAGGTAAGGTCAGGGCTGGATCGGAACAGCTGCTaGTTGGTGAGAGGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: QDSIESSRDRSGEVRSGLDRNSC*LVRGRK
Trigger: CTTCCTGCCTCTCACCAAGCAGCAGCTGTTCCGATC...CAGCCCTGACCTTACCTCTCCACTCCTGTCCCGGGAGCTCTCAATGCTATCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CCTCCAGGAACGTTCTCTCTGCATGGAGGAGCTGGGGTCCGCTTCTCTGAAGGCATCTGCTCCAAGTGGTaGCGGTACACCTCAATCTCC +
Preference number: 4 (lower is better)
Translates to: PPGTFSLHGGAGVRFSEGICSKW*RYTSIS
Trigger: GGAGATTGAGGTGTACCGCCACCACTTGGAGCAGAT...GCCTTCAGAGAAGCGGACCCCAGCTCCTCCATGCAGAGAGAACGTTCCTGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
CDS-3UTR CCA 90 bp GGCCAGCAATCCCGACCCATCATGCTGTCTACTCCCACCAACAGGCAGGGTGACATCTGCTCCAAGTGGTaGCGGTACACCTCAATCTCC +
Preference number: 4 (lower is better)
Translates to: GQQSRPIMLSTPTNRQGDICSKW*RYTSIS
Trigger: GGAGATTGAGGTGTACCGCCACCACTTGGAGCAGAT...GTCACCCTGCCTGTTGGTGGGAGTAGACAGCATGATGGGTCGGGATTGCTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp CCAGTTCCTTGGAGGAAAGAGACAGGAAGGCGTTCCTCGTCCTCTCAGACAGCTCGGAGCAGGATGACCTaGAATGGGGCCTTCACTGCC +
Preference number: 4 (lower is better)
Translates to: PVPWRKETGRRSSSSQTARSRMT*NGAFTA
Trigger: GGCAGTGAAGGCCCCATTCCAGGTCATCCTGCTCCG...AGCTGTCTGAGAGGACGAGGAACGCCTTCCTGTCTCTTTCCTCCAAGGAACTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp CATCTGAACTGTGCAGCTCACGAGCAACTGGTGGGTCAGGCAGGGACCCTGGATACTCCTCTGAGCTGCTaGGGGTATTTGGTGCTTCCC +
Preference number: 4 (lower is better)
Translates to: HLNCAAHEQLVGQAGTLDTPLSC*GYLVLP
Trigger: GGGAAGCACCAAATACCCCCAGCAGCTCAGAGGAGT...ATCCAGGGTCCCTGCCTGACCCACCAGTTGCTCGTGAGCTGCACAGTTCAGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp TGGTTCTTGGTGGGGCTCTGCAGCAGACCTCTGGTGTCTCGGAGGCAGCAGACGAGTGTGATTCCTCTGTaGCAGCTGGGGAGACTCAAT +
Preference number: 4 (lower is better)
Translates to: WFLVGLCSRPLVSRRQQTSVIPL*QLGRLN
Trigger: ATTGAGTCTCCCCAGCTGCCACAGAGGAATCACACT...CGTCTGCTGCCTCCGAGACACCAGAGGTCTGCTGCAGAGCCCCACCAAGAACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp GTGAGGCAGGAGATCATGGGTTTATTGTTCAGTCCCAGGCTCCCTGCTGCCCAGACTCGTCCTCTTTCTTaGTGGAGTGGCTACTGCGGG +
Preference number: 4 (lower is better)
Translates to: VRQEIMGLLFSPRLPAAQTRPLS*WSGYCG
Trigger: CCCGCAGTAGCCACTCCATCAAGAAAGAGGACGAGT...CTGGGCAGCAGGGAGCCTGGGACTGAACAATAAACCCATGATCTCCTGCCTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp GAGATCCCTGGTTTTGGGTTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCCCACTGCTGTGGCTGTaGAGGGTCCCGGGGACTGGG +
Preference number: 4 (lower is better)
Translates to: EIPGFGFRVSAPNTVDVCPLLWL*RVPGTG
Trigger: CCCAGTCCCCGGGACCCTGCACAGCCACAGCAGTGG...GCAAACATCAACTGTGTTTGGTGCTGACACTCTGAACCCAAAACCAGGGATCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp AAAAGCACCCAGAGCTTGAGAGACCACCTCCCAGCAGGGAGGGCTGAAGGCATCCACAGCTTGTACATCTaGTCCAAGTGGTGGCGGTAC +
Preference number: 4 (lower is better)
Translates to: KSTQSLRDHLPAGRAEGIHSLYI*SKWWRY
Trigger: GTACCGCCACCACTTGGAGCAGATGTACAAGCTGTG...GATGCCTTCAGCCCTCCCTGCTGGGAGGTGGTCTCTCAAGCTCTGGGTGCTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp AGGCAGGAGATCATGGGTTTATTGTTCAGTCCCAGGCTCCCTGCTGCCCAGCCCAGCTTCTCTGTGGCATaGTCAGGCAATAGACCCAGC +
Preference number: 4 (lower is better)
Translates to: RQEIMGLLFSPRLPAAQPSFSVA*SGNRPS
Trigger: GCTGGGTCTATTGCCTGAGCATGCCACAGAGAAGCT...GGGCTGGGCAGCAGGGAGCCTGGGACTGAACAATAAACCCATGATCTCCTGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp AAAAGCACCCAGAGCTTGAGAGACCACCTCCCAGCAGGGAGGGCTGAAGGCATCGACCATTGTGTGTGTTaGCTTCACCCTCCGCGCAAT +
Preference number: 4 (lower is better)
Translates to: KSTQSLRDHLPAGRAEGIDHCVC*LHPPRN
Trigger: ATTGCGCGGAGGGTGAAGCCAACACACACAATGGTC...GATGCCTTCAGCCCTCCCTGCTGGGAGGTGGTCTCTCAAGCTCTGGGTGCTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CAGGATAGCATTGAGAGCTCCCGGGACAGGAGTGGAGAGGTAAGGTCAGGGCTGGGCACCAGTGTATCGTaGTTGCAGAACCAGCAGTTG +
Preference number: 4 (lower is better)
Translates to: QDSIESSRDRSGEVRSGLGTSVS*LQNQQL
Trigger: CAACTGCTGGTTCTGCAACCACGATACACTGGTGCC...CAGCCCTGACCTTACCTCTCCACTCCTGTCCCGGGAGCTCTCAATGCTATCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GTCAGGGACTTGACCCAGGAGGTCAAGGCAGAGACAGAGCCCCTCGGGGAGGGAGTACTGTGCTGGGATTaGCTTGTTGTAGTCTCCATT +
Preference number: 4 (lower is better)
Translates to: VRDLTQEVKAETEPLGEGVLCWD*LVVVSI
Trigger: AATGGAGACTACAACAAGCCAATCCCAGCACAGTAC...TCCCTCCCCGAGGGGCTCTGTCTCTGCCTTGACCTCCTGGGTCAAGTCCCTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CTAGAGCTGGCAGGAAGCTATGGGGCTATGACAGGGTCTCAGGCCAGAAGCGGTACGCTGCTCACCACGTaGTTCAGGTGTTCCATGTAC +
Preference number: 4 (lower is better)
Translates to: LELAGSYGAMTGSQARSGTLLTT*FRCSMY
Trigger: GTACATGGAACACCTGAACCACGTGGTGAGCAGCGT...ACCGCTTCTGGCCTGAGACCCTGTCATAGCCCCATAGCTTCCTGCCAGCTCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp CAATGTGACTACATGGGCCTAGGTCAGGCGGCCTGTGTCTGCCTGCACCCAGCATACATCTGCTCCAAGTaGTGGCGGTACACCTCAATC +
Preference number: 4 (lower is better)
Translates to: QCDYMGLGQAACVCLHPAYICSK*WRYTSI
Trigger: GATTGAGGTGTACCGCCACCACTTGGAGCAGATGTA...TGCTGGGTGCAGGCAGACACAGGCCGCCTGACCTAGGCCCATGTAGTCACATTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
CDS-3UTR CCA 90 bp TTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCAGTCTGTTGGGTGGACAGTACTCGACGGCCGCCTaGCACGGGCGGCACAGCTTG +
Preference number: 4 (lower is better)
Translates to: FRVSAPNTVDVCSLLGGQYSTAA*HGRHSL
Trigger: CAAGCTGTGCCGCCCGTGCCAGGCGGCCGTCGAGTA...CTGTCCACCCAACAGACTGCAAACATCAACTGTGTTTGGTGCTGACACTCTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp AGAGGTGTCACCTCCAAGCTGAACCCTTTGTGGCAGCTGGACTCATGGAGTCCTAGCAGGGCACGCAGCTaGCGGTTCTGGTGTTTGATG +
Preference number: 4 (lower is better)
Translates to: RGVTSKLNPLWQLDSWSPSRARS*RFWCLM
Trigger: CATCAAACACCAGAACCGCCAGCTGCGTGCCCTGCT...AGGACTCCATGAGTCCAGCTGCCACAAAGGGTTCAGCTTGGAGGTGACACCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CCAGGCTCCATGTGCATCTCTCAGGGGCTTTCTTCATCTTGGTTCTTGGTGGGGCAGGATGACCTGGAATaGGGCCTTCACTGCCGAGGA +
Preference number: 4 (lower is better)
Translates to: PGSMCISQGLSSSWFLVGQDDLE*GLHCRG
Trigger: TCCTCGGCAGTGAAGGCCCCATTCCAGGTCATCCTG...CCCCACCAAGAACCAAGATGAAGAAAGCCCCTGAGAGATGCACATGGAGCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GAGATCCCTGGTTTTGGGTTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCTGGAGGCCACGGAGCTaGCCACGGAAGGTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: EIPGFGFRVSAPNTVDVCWRPRS*PRKVLG
Trigger: CCCCAGCACCTTCCGTGGCCAGCTCCGTGGCCTCCA...GCAAACATCAACTGTGTTTGGTGCTGACACTCTGAACCCAAAACCAGGGATCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CAGGGAGGGCTGAAGGCATCTGCTTCAAAGCACGTGCCTCACCTGGCAACAGATGAGCTTTCCAGGGAGTaGTCTCCTCTGAGCACCCTT +
Preference number: 4 (lower is better)
Translates to: QGGLKASASKHVPHLATDELSRE*SPLSTL
Trigger: AAGGGTGCTCAGAGGAGACCACTCCCTGGAAAGCTC...ATCTGTTGCCAGGTGAGGCACGTGCTTTGAAGCAGATGCCTTCAGCCCTCCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp AGAGGTGTCACCTCCAAGCTGAACCCTTTGTGGCAGCTGGACTCATGGAGTCCTACTCGTCCTCTTTCTTaGTGGAGTGGCTACTGCGGG +
Preference number: 4 (lower is better)
Translates to: RGVTSKLNPLWQLDSWSPTRPLS*WSGYCG
Trigger: CCCGCAGTAGCCACTCCATCAAGAAAGAGGACGAGT...AGGACTCCATGAGTCCAGCTGCCACAAAGGGTTCAGCTTGGAGGTGACACCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp AAAAGCACCCAGAGCTTGAGAGACCACCTCCCAGCAGGGAGGGCTGAAGGCATCTTGTACTGCTCACAGTaGGGACAGTCCCAACAGTTG +
Preference number: 4 (lower is better)
Translates to: KSTQSLRDHLPAGRAEGILYCSQ*GQSQQL
Trigger: CAACTGTTGGGACTGTCCCCACTGTGAGCAGTACAA...GATGCCTTCAGCCCTCCCTGCTGGGAGGTGGTCTCTCAAGCTCTGGGTGCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp TGTAGACCAAAGAGGTGTCACCTCCAAGCTGAACCCTTTGTGGCAGCTGGACTCATCTTGGTGGTCTGGTaGTGGCTGCACCTTCGGCAC +
Preference number: 4 (lower is better)
Translates to: CRPKRCHLQAEPFVAAGLILVVW*WLHLRH
Trigger: GTGCCGAAGGTGCAGCCACCACCAGACCACCAAGAT...GAGTCCAGCTGCCACAAAGGGTTCAGCTTGGAGGTGACACCTCTTTGGTCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GAGATCCCTGGTTTTGGGTTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCCGACGCCGGAACTGGTaGCTGAGAAGCAGGGCACGC +
Preference number: 4 (lower is better)
Translates to: EIPGFGFRVSAPNTVDVCRRRNW*LRSRAR
Trigger: GCGTGCCCTGCTTCTCAGCCACCAGTTCCGGCGTCG...GCAAACATCAACTGTGTTTGGTGCTGACACTCTGAACCCAAAACCAGGGATCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CATTGCTTCTCTTTAGGTGTTTCCTCAGGGCTGGAGACAAGGATGCTGAGGGACCAGCCAGGCTGGGGCTaGAAGGAAAAAGGCTGGCAG +
Preference number: 4 (lower is better)
Translates to: HCFSLGVSSGLETRMLRDQPGWG*KEKGWQ
Trigger: CTGCCAGCCTTTTTCCTTCCAGCCCCAGCCTGGCTG...GTCCCTCAGCATCCTTGTCTCCAGCCCTGAGGAAACACCTAAAGAGAAGCAATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp ACAGGATGTGCTCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGTAAGCAGGGAAGCTGCTaGACAGCAGAGAAAAGTAAT +
Preference number: 4 (lower is better)
Translates to: TGCAPACSSKPAVPSAGSKQGSC*TAEKSN
Trigger: ATTACTTTTCTCTGCTGTCCAGCAGCTTCCCTGCTT...ACTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGAGCACATCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CCAGGCTCCATGTGCATCTCTCAGGGGCTTTCTTCATCTTGGTTCTTGGTGGGGGACCTTTCCAGGGAGTaGTCTCCTCTGAGCACCCTT +
Preference number: 4 (lower is better)
Translates to: PGSMCISQGLSSSWFLVGDLSRE*SPLSTL
Trigger: AAGGGTGCTCAGAGGAGACCACTCCCTGGAAAGGTC...CCCCACCAAGAACCAAGATGAAGAAAGCCCCTGAGAGATGCACATGGAGCCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CAA 72 bp GAACCAGAAGAACCACCACAGGGAGTAGCTTTATCATaGTCCCCAGAAGGGGGCTTGGGACTGGCTCTCCCA +
Preference number: 4 (lower is better)
Translates to: EPEEPPQGVALS*SPEGGLGLALP
Trigger: TGGGAGAGCCAGTCCCAAGCCCCCTTCTGGGGACAATGATAAAGCTACTCCCTGTGGTGGTTCTTCTGGTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CAA 72 bp ATGTGCATCTCTCAGGGGCTTTCTTCATCTTGGTTCTaGGTGGGGCTCTGCAGCAGACCTCTGGTGTCTCGG +
Preference number: 4 (lower is better)
Translates to: MCISQGLSSSWF*VGLCSRPLVSR
Trigger: CCGAGACACCAGAGGTCTGCTGCAGAGCCCCACCAAGAACCAAGATGAAGAAAGCCCCTGAGAGATGCACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CAA 72 bp AGGCTCCATGTGCATCTCTCAGGGGCTTTCTTCATCTaGGTTCTTGGTGGGGCTCTGCAGCAGACCTCTGGT +
Preference number: 4 (lower is better)
Translates to: RLHVHLSGAFFI*VLGGALQQTSG
Trigger: ACCAGAGGTCTGCTGCAGAGCCCCACCAAGAACCAAGATGAAGAAAGCCCCTGAGAGATGCACATGGAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CAA 72 bp CAGCAGCTGCCCCCAGAGAAACCGAGGGCAGAAGCCTaGGCACCCTCCAAAAATTATTTCAAGGAAGCCACC +
Preference number: 4 (lower is better)
Translates to: QQLPPEKPRAEA*APSKNYFKEAT
Trigger: GGTGGCTTCCTTGAAATAATTTTTGGAGGGTGCCAAGGCTTCTGCCCTCGGTTTCTCTGGGGGCAGCTGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR TCA 90 bp CTTGGAGGAAAGAGACAGGAAGGCGTTCCTCGTCCTCTCAGACAGCTGTACCCCTGCAGAACCAGCAGTTaGCCATTGTGTGTGTTGGCT +
Preference number: 4 (lower is better)
Translates to: LGGKRQEGVPRPLRQLYPCRTSS*PLCVLA
Trigger: AGCCAACACACACAATGGTCAACTGCTGGTTCTGCA...GGGGTACAGCTGTCTGAGAGGACGAGGAACGCCTTCCTGTCTCTTTCCTCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR TCA 90 bp TCCTCAGGGCTGGAGACAAGGATGCTGAGGGACAATTTGGTTTCTTTAGGCAGGACGCAGGTGGAGGACTaGGACGACTCGTCCTCTTTC +
Preference number: 4 (lower is better)
Translates to: SSGLETRMLRDNLVSLGRTQVED*DDSSSF
Trigger: GAAAGAGGACGAGTCGTCTCAGTCCTCCACCTGCGT...CCTGCCTAAAGAAACCAAATTGTCCCTCAGCATCCTTGTCTCCAGCCCTGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp GAGATCCCTGGTTTTGGGTTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCGGACCAGGGAGGGACTaGCACGAGCTTTCCAGGGAG +
Preference number: 4 (lower is better)
Translates to: EIPGFGFRVSAPNTVDVCGPGRD*HELSRE
Trigger: CTCCCTGGAAAGCTCGTGTCAGTCCCTCCCTGGTCC...GCAAACATCAACTGTGTTTGGTGCTGACACTCTGAACCCAAAACCAGGGATCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp TCAGGGGCTTTCTTCATCTTGGTTCTTGGTGGGGCTCTGCAGCAGACCTCTGGTGACAGTCCCAACAGTTaGGATTCCCATAGGGCACCA +
Preference number: 4 (lower is better)
Translates to: SGAFFILVLGGALQQTSGDSPNS*DSHRAP
Trigger: TGGTGCCCTATGGGAATCGCAACTGTTGGGACTGTC...ACCAGAGGTCTGCTGCAGAGCCCCACCAAGAACCAAGATGAAGAAAGCCCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp TCCTCAGGGCTGGAGACAAGGATGCTGAGGGACAATTTGGTTTCTTTAGGCAGGGGAGATCGGAACAGCTaGTGCTTGGTGAGAGGCAGG +
Preference number: 4 (lower is better)
Translates to: SSGLETRMLRDNLVSLGRGDRNS*CLVRGR
Trigger: CCTGCCTCTCACCAAGCAGCAGCTGTTCCGATCTCC...CCTGCCTAAAGAAACCAAATTGTCCCTCAGCATCCTTGTCTCCAGCCCTGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp TCCTCAGGGCTGGAGACAAGGATGCTGAGGGACAATTTGGTTTCTTTAGGCAGGTTTCAGGTTGAGCCGTaGAGGGCTGATGAGGGGCCT +
Preference number: 4 (lower is better)
Translates to: SSGLETRMLRDNLVSLGRFQVEP*RADEGP
Trigger: AGGCCCCTCATCAGCCCTGCACGGCTCAACCTGAAA...CCTGCCTAAAGAAACCAAATTGTCCCTCAGCATCCTTGTCTCCAGCCCTGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp TCAGGGGCTTTCTTCATCTTGGTTCTTGGTGGGGCTCTGCAGCAGACCTCTGGTGACCATTGTGTGTGTTaGCTTCACCCTCCGCGCAAT +
Preference number: 4 (lower is better)
Translates to: SGAFFILVLGGALQQTSGDHCVC*LHPPRN
Trigger: ATTGCGCGGAGGGTGAAGCCAACACACACAATGGTC...ACCAGAGGTCTGCTGCAGAGCCCCACCAAGAACCAAGATGAAGAAAGCCCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GGAAGCTATGGGGCTATGACAGGGTCTCAGGCCAGAAGCGGTGGCAGTGGTGAGGTACTGTGCTGGGATTaGCTTGTTGTAGTCTCCATT +
Preference number: 4 (lower is better)
Translates to: GSYGAMTGSQARSGGSGEVLCWD*LVVVSI
Trigger: AATGGAGACTACAACAAGCCAATCCCAGCACAGTAC...CTCACCACTGCCACCGCTTCTGGCCTGAGACCCTGTCATAGCCCCATAGCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp GGAAGCTATGGGGCTATGACAGGGTCTCAGGCCAGAAGCGGTGGCAGTGGTGAGTTCCATGTACTGTGCTaGGATTGGCTTGTTGTAGTC +
Preference number: 4 (lower is better)
Translates to: GSYGAMTGSQARSGGSGEFHVLC*DWLVVV
Trigger: GACTACAACAAGCCAATCCCAGCACAGTACATGGAA...CTCACCACTGCCACCGCTTCTGGCCTGAGACCCTGTCATAGCCCCATAGCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CCA 90 bp TTTAGGGAGGCTGAGGCCAGCCTGGGCTATAAGGAGACCTTGCTTAAACCAACAAGCAGGGCACGCAGCTaGCGGTTCTGGTGTTTGATG +
Preference number: 4 (lower is better)
Translates to: FREAEASLGYKETLLKPTSRARS*RFWCLM
Trigger: CATCAAACACCAGAACCGCCAGCTGCGTGCCCTGCT...TGTTGGTTTAAGCAAGGTCTCCTTATAGCCCAGGCTGGCCTCAGCCTCCCTAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CAA 72 bp CCTGCCTTCCTTCTCACCCAGGGGATGTCACTGGGATaGACTGATGGTCTCATATGCTGCCTGTCAGTAGTC +
Preference number: 4 (lower is better)
Translates to: PAFLLTQGMSLG*TDGLICCLSVV
Trigger: GACTACTGACAGGCAGCATATGAGACCATCAGTCAATCCCAGTGACATCCCCTGGGTGAGAAGGAAGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
3UTR CAA 72 bp GATCCATCCTCCTCCTACCTGGCAGACCATTGGAACTaGCTGACCATAAGGAACTGCGGGGCTTTCTACTGC +
Preference number: 4 (lower is better)
Translates to: DPSSSYLADHWN*LTIRNCGAFYC
Trigger: GCAGTAGAAAGCCCCGCAGTTCCTTATGGTCAGCAAGTTCCAATGGTCTGCCAGGTAGGAGGAGGATGGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR TCA 90 bp TTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCAGTCTGTTGGGTGGACAGGGGAGTGGTCTCCTCTaGGCACCCTTTGGTGGTGGT +
Preference number: 4 (lower is better)
Translates to: FRVSAPNTVDVCSLLGGQGSGLL*APFGGG
Trigger: ACCACCACCAAAGGGTGCTCAGAGGAGACCACTCCC...CTGTCCACCCAACAGACTGCAAACATCAACTGTGTTTGGTGCTGACACTCTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CATCTGAACTGTGCAGCTCACGAGCAACTGGTGGGTCAGGCAGGGACCCTGGATTTCCATGTACTGTGCTaGGATTGGCTTGTTGTAGTC +
Preference number: 4 (lower is better)
Translates to: HLNCAAHEQLVGQAGTLDFHVLC*DWLVVV
Trigger: GACTACAACAAGCCAATCCCAGCACAGTACATGGAA...ATCCAGGGTCCCTGCCTGACCCACCAGTTGCTCGTGAGCTGCACAGTTCAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp TCAGGGGCTTTCTTCATCTTGGTTCTTGGTGGGGCTCTGCAGCAGACCTCTGGTTACATCTGCTCCAAGTaGTGGCGGTACACCTCAATC +
Preference number: 4 (lower is better)
Translates to: SGAFFILVLGGALQQTSGYICSK*WRYTSI
Trigger: GATTGAGGTGTACCGCCACCACTTGGAGCAGATGTA...ACCAGAGGTCTGCTGCAGAGCCCCACCAAGAACCAAGATGAAGAAAGCCCCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp TTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCAGTCTGTTGGGTGGACAGCTGAAACTCTGCCCATaGGCCTGGTCAGCCTCCCGA +
Preference number: 4 (lower is better)
Translates to: FRVSAPNTVDVCSLLGGQLKLCP*AWSASR
Trigger: TCGGGAGGCTGACCAGGCCCATGGGCAGAGTTTCAG...CTGTCCACCCAACAGACTGCAAACATCAACTGTGTTTGGTGCTGACACTCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CCAGGCTCCATGTGCATCTCTCAGGGGCTTTCTTCATCTTGGTTCTTGGTGGGGTGGAAGGAAAAAGGCTaGCAGAGTCTCCGGAGAAGT +
Preference number: 4 (lower is better)
Translates to: PGSMCISQGLSSSWFLVGWKEKG*QSLRRS
Trigger: ACTTCTCCGGAGACTCTGCCAGCCTTTTTCCTTCCA...CCCCACCAAGAACCAAGATGAAGAAAGCCCCTGAGAGATGCACATGGAGCCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GCAATCCAGGATAGCATTGAGAGCTCCCGGGACAGGAGTGGAGAGGTAAGGTCAAGTGTGATTCCTCTGTaGCAGCTGGGGAGACTCAAT +
Preference number: 4 (lower is better)
Translates to: AIQDSIESSRDRSGEVRSSVIPL*QLGRLN
Trigger: ATTGAGTCTCCCCAGCTGCCACAGAGGAATCACACT...TGACCTTACCTCTCCACTCCTGTCCCGGGAGCTCTCAATGCTATCCTGGATTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp CATTGCTTCTCTTTAGGTGTTTCCTCAGGGCTGGAGACAAGGATGCTGAGGGACGTGAAAGCAGCCAGCTaGTTGATCTTGGTGGTCTGG +
Preference number: 4 (lower is better)
Translates to: HCFSLGVSSGLETRMLRDVKAAS*LILVVW
Trigger: CCAGACCACCAAGATCAAGCAGCTGGCTGCTTTCAC...GTCCCTCAGCATCCTTGTCTCCAGCCCTGAGGAAACACCTAAAGAGAAGCAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp TTCTCTTTAGGTGTTTCCTCAGGGCTGGAGACAAGGATGCTGAGGGACAATTTGATCTTGGTGGTCTGGTaGTGGCTGCACCTTCGGCAC +
Preference number: 4 (lower is better)
Translates to: FSLGVSSGLETRMLRDNLILVVW*WLHLRH
Trigger: GTGCCGAAGGTGCAGCCACCACCAGACCACCAAGAT...CAAATTGTCCCTCAGCATCCTTGTCTCCAGCCCTGAGGAAACACCTAAAGAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GAGATCCCTGGTTTTGGGTTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCCAGGATGACCTGGAATaGGGCCTTCACTGCCGAGGA +
Preference number: 4 (lower is better)
Translates to: EIPGFGFRVSAPNTVDVCQDDLE*GLHCRG
Trigger: TCCTCGGCAGTGAAGGCCCCATTCCAGGTCATCCTG...GCAAACATCAACTGTGTTTGGTGCTGACACTCTGAACCCAAAACCAGGGATCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR TCA 90 bp AGGGTAACAGAGCTACTTGCTGGGAAAGTCACAAACAGGTGTGTGAGGCAGGAGTGCAGAACCAGCAGTTaGCCATTGTGTGTGTTGGCT +
Preference number: 4 (lower is better)
Translates to: RVTELLAGKVTNRCVRQECRTSS*PLCVLA
Trigger: AGCCAACACACACAATGGTCAACTGCTGGTTCTGCA...CTCCTGCCTCACACACCTGTTTGTGACTTTCCCAGCAAGTAGCTCTGTTACCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp GAGATCCCTGGTTTTGGGTTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCACTCCTCTGAGCTGCTaGGGGTATTTGGTGCTTCCC +
Preference number: 4 (lower is better)
Translates to: EIPGFGFRVSAPNTVDVCTPLSC*GYLVLP
Trigger: GGGAAGCACCAAATACCCCCAGCAGCTCAGAGGAGT...GCAAACATCAACTGTGTTTGGTGCTGACACTCTGAACCCAAAACCAGGGATCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp TTCTCTTTAGGTGTTTCCTCAGGGCTGGAGACAAGGATGCTGAGGGACAATTTGGACAGTCCCAACAGTTaGGATTCCCATAGGGCACCA +
Preference number: 4 (lower is better)
Translates to: FSLGVSSGLETRMLRDNLDSPNS*DSHRAP
Trigger: TGGTGCCCTATGGGAATCGCAACTGTTGGGACTGTC...CAAATTGTCCCTCAGCATCCTTGTCTCCAGCCCTGAGGAAACACCTAAAGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp CAGGGGTATAATACAAATACACATACACACACACACACACACACACACACTCACTGGTCTGGTGGTGGCTaGACCTTCGGCACAGCAGGA +
Preference number: 4 (lower is better)
Translates to: QGYNTNTHTHTHTHTHTHWSGGG*TFGTAG
Trigger: TCCTGCTGTGCCGAAGGTGCAGCCACCACCAGACCA...GTGAGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTATTTGTATTATACCCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR GCA 90 bp TTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCAGTCTGTTGGGTGGACAGGTGAAAGCAGCCAGCTaGTTGATCTTGGTGGTCTGG +
Preference number: 4 (lower is better)
Translates to: FRVSAPNTVDVCSLLGGQVKAAS*LILVVW
Trigger: CCAGACCACCAAGATCAAGCAGCTGGCTGCTTTCAC...CTGTCCACCCAACAGACTGCAAACATCAACTGTGTTTGGTGCTGACACTCTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp TTCTCTTTAGGTGTTTCCTCAGGGCTGGAGACAAGGATGCTGAGGGACAATTTGATCTGCTCCAAGTGGTaGCGGTACACCTCAATCTCC +
Preference number: 4 (lower is better)
Translates to: FSLGVSSGLETRMLRDNLICSKW*RYTSIS
Trigger: GGAGATTGAGGTGTACCGCCACCACTTGGAGCAGAT...CAAATTGTCCCTCAGCATCCTTGTCTCCAGCCCTGAGGAAACACCTAAAGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp CATTGCTTCTCTTTAGGTGTTTCCTCAGGGCTGGAGACAAGGATGCTGAGGGACGTACTGTGCTGGGATTaGCTTGTTGTAGTCTCCATT +
Preference number: 4 (lower is better)
Translates to: HCFSLGVSSGLETRMLRDVLCWD*LVVVSI
Trigger: AATGGAGACTACAACAAGCCAATCCCAGCACAGTAC...GTCCCTCAGCATCCTTGTCTCCAGCCCTGAGGAAACACCTAAAGAGAAGCAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CCA 90 bp TTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCAGTCTGTTGGGTGGACAGTTCCATGTACTGTGCTaGGATTGGCTTGTTGTAGTC +
Preference number: 4 (lower is better)
Translates to: FRVSAPNTVDVCSLLGGQFHVLC*DWLVVV
Trigger: GACTACAACAAGCCAATCCCAGCACAGTACATGGAA...CTGTCCACCCAACAGACTGCAAACATCAACTGTGTTTGGTGCTGACACTCTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
3UTR CAA 72 bp TCAAAACATGGCAGCTATGGCCAGTGGTGGTTACAGTaGTTAGGGTCGCTGGACAATCACAATCTACTACAT +
Preference number: 4 (lower is better)
Translates to: SKHGSYGQWWLQ*LGSLDNHNLLH
Trigger: ATGTAGTAGATTGTGATTGTCCAGCGACCCTAACAACTGTAACCACCACTGGCCATAGCTGCCATGTTTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
3UTR CAA 72 bp AAAAATGCAGAAATTAACACCATATTGTCAGCTTCTTaGAGATCCACAATACACAGGAGAGGACGCGCAGAC +
Preference number: 4 (lower is better)
Translates to: KNAEINTILSAS*RSTIHRRGRAD
Trigger: GTCTGCGCGTCCTCTCCTGTGTATTGTGGATCTCAAAGAAGCTGACAATATGGTGTTAATTTCTGCATTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS TCA 90 bp CAGTCCGGGTCAGAGGAGGTATGGTTCCCAGCGAGAGGGCCCGACTaGGGCGGCCTGGCAGTGAGGAGGGGGAGACCCGACGGGGAGATC +
Preference number: 5 (lower is better)
Translates to: QSGSEEVWFPARGPD*GGLAVRRGRPDGEI
Trigger: GATCTCCCCGTCGGGTCTCCCCCTCCTCACTGCCAGGCCGCCTCAGTCGGGCCCTCTCGCTGGGAACCATACCTCCTCTGACCCGGACTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS CCA 90 bp GCTGCACCTTCGGCACAGCAGGACCTGGCTGCTCACCCACTGCTGTaGCTGTGCAGGGTCCCGGGGACTGGGCACGCTGCTCACCACGTG +
Preference number: 5 (lower is better)
Translates to: AAPSAQQDLAAHPLL*LCRVPGTGHAAHHV
Trigger: CACGTGGTGAGCAGCGTGCCCAGTCCCCGGGACCCTGCACAGCCACAGCAGTGGGTGAGCAGCCAGGTCCTGCTGTGCCGAAGGTGCAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS GCA 90 bp CCTTCGGCACAGCAGGACCTGGCTGCTCACCCACTGCTGTGGCTGTaGAGGGTCCCGGGGACTGGGCACGCTGCTCACCACGTGGTTCAG +
Preference number: 5 (lower is better)
Translates to: PSAQQDLAAHPLLWL*RVPGTGHAAHHVVQ
Trigger: CTGAACCACGTGGTGAGCAGCGTGCCCAGTCCCCGGGACCCTGCACAGCCACAGCAGTGGGTGAGCAGCCAGGTCCTGCTGTGCCGAAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS-3UTR CAA 90 bp GCCAACAGTTGGGGCGAGATGGGCGGCTGCTGCCTGATGCAGGGAGCCGGGCCCGCCAGCTGCTTGATCTaGGTGGTCTGGTGGTGGCTG +
Preference number: 5 (lower is better)
Translates to: ANSWGEMGGCCLMQGAGPASCLI*VVWWWL
Trigger: CAGCCACCACCAGACCACCAAGATCAAGCAGCTGGC...GGGCCCGGCTCCCTGCATCAGGCAGCAGCCGCCCATCTCGCCCCAACTGTTGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS TCA 90 bp AGGTATGGTTCCCAGCGAGAGGGCCCGACTGAGGCGGCCTGGCAGTaGGGAGGGGGAGACCCGACGGGGAGATCGGAACAGCTGCTGCTT +
Preference number: 5 (lower is better)
Translates to: RYGSQREGPTEAAWQ*GGGDPTGRSEQLLL
Trigger: AAGCAGCAGCTGTTCCGATCTCCCCGTCGGGTCTCCCCCTCCTCACTGCCAGGCCGCCTCAGTCGGGCCCTCTCGCTGGGAACCATACCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS CCA 90 bp TGTCCTTTCAGGTTGAGCCGTGCAGGGCTGATGAGGGGCCTGCGGTaGCGCAAGGAGCCAGAGCTGGAGGCCACGGAGCTGGCCACGGAA +
Preference number: 5 (lower is better)
Translates to: CPFRLSRAGLMRGLR*RKEPELEATELATE
Trigger: TTCCGTGGCCAGCTCCGTGGCCTCCAGCTCTGGCTCCTTGCGCCACCGCAGGCCCCTCATCAGCCCTGCACGGCTCAACCTGAAAGGACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS CCA 90 bp CTGAAACTCTGCCCATGGGCCTGGTCAGCCTCCCGACGCCGGAACTaGTGGCTGAGAAGCAGGGCACGCAGCTGGCGGTTCTGGTGTTTG +
Preference number: 5 (lower is better)
Translates to: LKLCPWAWSASRRRN*WLRSRARSWRFWCL
Trigger: CAAACACCAGAACCGCCAGCTGCGTGCCCTGCTTCTCAGCCACCAGTTCCGGCGTCGGGAGGCTGACCAGGCCCATGGGCAGAGTTTCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 90 bp CAGGCAATAGACCCAGCAGCTGCTGCCAGCCCTCCGCCTGAGAAGTaGTGTTGTCCGAGGCCGCAGAACTGTTGCCCCCAGGAGGTAGGG +
Preference number: 5 (lower is better)
Translates to: QAIDPAAAASPPPEK*CCPRPQNCCPQEVG
Trigger: CCCTACCTCCTGGGGGCAACAGTTCTGCGGCCTCGGACAACACCACTTCTCAGGCGGAGGGCTGGCAGCAGCTGCTGGGTCTATTGCCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 90 bp GCTGGCAGAGTCTCCGGAGAAGTACCTTCGGGGCCGGAACCTCCGTaGGCCTGTCGATTTCCTCGTAGCCACAGCTGCGGTGAAGCCCAC +
Preference number: 5 (lower is better)
Translates to: AGRVSGEVPSGPEPP*ACRFPRSHSCGEAH
Trigger: GTGGGCTTCACCGCAGCTGTGGCTACGAGGAAATCGACAGGCCCACGGAGGTTCCGGCCCCGAAGGTACTTCTCCGGAGACTCTGCCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CAA 90 bp GCCAACAGTTGGGGCGAGATGGGCGGCTGCTGCCTGATGCAGGGAGCCGGGCCCACCAGTGTATCGTGGTaGCAGAACCAGCAGTTGACC +
Preference number: 5 (lower is better)
Translates to: ANSWGEMGGCCLMQGAGPTSVSW*QNQQLT
Trigger: GGTCAACTGCTGGTTCTGCAACCACGATACACTGGT...GGGCCCGGCTCCCTGCATCAGGCAGCAGCCGCCCATCTCGCCCCAACTGTTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CAA 90 bp TGTGCTCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGTGGCTGGGCCAGCTGCTTGATCTaGGTGGTCTGGTGGTGGCTG +
Preference number: 5 (lower is better)
Translates to: CAPACSSKPAVPSAGSGWASCLI*VVWWWL
Trigger: CAGCCACCACCAGACCACCAAGATCAAGCAGCTGGC...CCAGCCACTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGAGCACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS TCA 90 bp GCATGCTCAGGCAATAGACCCAGCAGCTGCTGCCAGCCCTCCGCCTaGGAAGTGGTGTTGTCCGAGGCCGCAGAACTGTTGCCCCCAGGA +
Preference number: 5 (lower is better)
Translates to: ACSGNRPSSCCQPSA*EVVLSEAAELLPPG
Trigger: TCCTGGGGGCAACAGTTCTGCGGCCTCGGACAACACCACTTCTCAGGCGGAGGGCTGGCAGCAGCTGCTGGGTCTATTGCCTGAGCATGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 90 bp AATGGGGCCTTCACTGCCGAGGAACTGAAACTCTGCCCATGGGCCTaGTCAGCCTCCCGACGCCGGAACTGGTGGCTGAGAAGCAGGGCA +
Preference number: 5 (lower is better)
Translates to: NGAFTAEELKLCPWA*SASRRRNWWLRSRA
Trigger: TGCCCTGCTTCTCAGCCACCAGTTCCGGCGTCGGGAGGCTGACCAGGCCCATGGGCAGAGTTTCAGTTCCTCGGCAGTGAAGGCCCCATT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 90 bp CGTGGTGTGAAAGCAGCCAGCTGCTTGATCTTGGTGGTCTGGTGGTaGCTGCACCTTCGGCACAGCAGGACCTGGCTGCTCACCCACTGC +
Preference number: 5 (lower is better)
Translates to: RGVKAASCLILVVWW*LHLRHSRTWLLTHC
Trigger: GCAGTGGGTGAGCAGCCAGGTCCTGCTGTGCCGAAGGTGCAGCCACCACCAGACCACCAAGATCAAGCAGCTGGCTGCTTTCACACCACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 90 bp TCCTCCCGTGGTGTGAAAGCAGCCAGCTGCTTGATCTTGGTGGTCTaGTGGTGGCTGCACCTTCGGCACAGCAGGACCTGGCTGCTCACC +
Preference number: 5 (lower is better)
Translates to: SSRGVKAASCLILVV*WWLHLRHSRTWLLT
Trigger: GGTGAGCAGCCAGGTCCTGCTGTGCCGAAGGTGCAGCCACCACCAGACCACCAAGATCAAGCAGCTGGCTGCTTTCACACCACGGGAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 90 bp TCTGGTGGCTCTGCCCAAAGGCCCAGGCCTCATGTAGCTTCTCTGTaGCATGCTCAGGCAATAGACCCAGCAGCTGCTGCCAGCCCTCCG +
Preference number: 5 (lower is better)
Translates to: SGGSAQRPRPHVASL*HAQAIDPAAAASPP
Trigger: CGGAGGGCTGGCAGCAGCTGCTGGGTCTATTGCCTGAGCATGCCACAGAGAAGCTACATGAGGCCTGGGCCTTTGGGCAGAGCCACCAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 90 bp ATGGCCAGCAGGCAGGTGAGCAGGCCCACTGCCACAATGCTGGTCTaGTGGCTCTGCCCAAAGGCCCAGGCCTCATGTAGCTTCTCTGTG +
Preference number: 5 (lower is better)
Translates to: MASRQVSRPTATMLV*WLCPKAQASCSFSV
Trigger: CACAGAGAAGCTACATGAGGCCTGGGCCTTTGGGCAGAGCCACCAGACCAGCATTGTGGCAGTGGGCCTGCTCACCTGCCTGCTGGCCAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS-3UTR CAA 90 bp TGGTTCTTGGTGGGGCTCTGCAGCAGACCTCTGGTGTCTCGGAGGCAGCAGACGCACGGGCGGCACAGCTaGTACATCTGCTCCAAGTGG +
Preference number: 5 (lower is better)
Translates to: WFLVGLCSRPLVSRRQQTHGRHS*YICSKW
Trigger: CCACTTGGAGCAGATGTACAAGCTGTGCCGCCCGTG...CGTCTGCTGCCTCCGAGACACCAGAGGTCTGCTGCAGAGCCCCACCAAGAACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CAA 90 bp TCCAGCGTGCTCCAGCAAGCCTGCAGTGCCCTCAGCAGGCAGTGGCTGGACACGGACTCGTCCTCTTTCTaGATGGAGTGGCTACTGCGG +
Preference number: 5 (lower is better)
Translates to: SSVLQQACSALSRQWLDTDSSSF*MEWLLR
Trigger: CCGCAGTAGCCACTCCATCAAGAAAGAGGACGAGTC...CGTGTCCAGCCACTGCCTGCTGAGGGCACTGCAGGCTTGCTGGAGCACGCTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS TCA 90 bp GACCAGGGAGGGACTGACACGAGCTTTCCAGGGAGTGGTCTCCTCTaGGCACCCTTTGGTGGTGGTGTCTACGACGCAGGTGGAGGACTG +
Preference number: 5 (lower is better)
Translates to: DQGGTDTSFPGSGLL*APFGGGVYDAGGGL
Trigger: CAGTCCTCCACCTGCGTCGTAGACACCACCACCAAAGGGTGCTCAGAGGAGACCACTCCCTGGAAAGCTCGTGTCAGTCCCTCCCTGGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105687.9
CDS GCA 90 bp AGGCAGGTGAGCAGGCCCACTGCCACAATGCTGGTCTGGTGGCTCTaGCCAAAGGCCCAGGCCTCATGTAGCTTCTCTGTGGCATGCTCA +
Preference number: 5 (lower is better)
Translates to: RQVSRPTATMLVWWL*PKAQASCSFSVACS
Trigger: TGAGCATGCCACAGAGAAGCTACATGAGGCCTGGGCCTTTGGGCAGAGCCACCAGACCAGCATTGTGGCAGTGGGCCTGCTCACCTGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 90 bp GGGAGATCGGAACAGCTGCTGCTTGGTGAGAGGCAGGAAGCCAGGTaGGGTGGGGATGAACAGGGATGCTGGCGAGGATGTGACACTTGG +
Preference number: 5 (lower is better)
Translates to: GRSEQLLLGERQEAR*GGDEQGCWRGCDTW
Trigger: CCAAGTGTCACATCCTCGCCAGCATCCCTGTTCATCCCCACCCCACCTGGCTTCCTGCCTCTCACCAAGCAGCAGCTGTTCCGATCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS CCA 90 bp GGCTACTGCGGGCGCTGTCTCTGGCCAGCATCGACCTCATCTCCATaGTGTGCTTTGTGTCCCGAGTGTGATTCCTCTGTGGCAGCTGGG +
Preference number: 5 (lower is better)
Translates to: GYCGRCLWPASTSSP*CALCPECDSSVAAG
Trigger: CCCAGCTGCCACAGAGGAATCACACTCGGGACACAAAGCACACCATGGAGATGAGGTCGATGCTGGCCAGAGACAGCGCCCGCAGTAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CAA 90 bp TTCCTCTGCCCTCCCTGGGCTCCAGTGCAGAGGGTGAAAGAGCCGCACTTAGAGCACGGGCGGCACAGCTaGTACATCTGCTCCAAGTGG +
Preference number: 5 (lower is better)
Translates to: FLCPPWAPVQRVKEPHLEHGRHS*YICSKW
Trigger: CCACTTGGAGCAGATGTACAAGCTGTGCCGCCCGTG...CTCTAAGTGCGGCTCTTTCACCCTCTGCACTGGAGCCCAGGGAGGGCAGAGGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS TCA 90 bp TGTCTACGACGCAGGTGGAGGACTGAGACGACTCGTCCTCTTTCTTaGTGGAGTGGCTACTGCGGGCGCTGTCTCTGGCCAGCATCGACC +
Preference number: 5 (lower is better)
Translates to: CLRRRWRTETTRPLS*WSGYCGRCLWPAST
Trigger: GGTCGATGCTGGCCAGAGACAGCGCCCGCAGTAGCCACTCCATCAAGAAAGAGGACGAGTCGTCTCAGTCCTCCACCTGCGTCGTAGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS CCA 90 bp GTGGCGGTACACCTCAATCTCCTCATCGTAGCGGCCCTCCTCCCGTaGTGTGAAAGCAGCCAGCTGCTTGATCTTGGTGGTCTGGTGGTG +
Preference number: 5 (lower is better)
Translates to: VAVHLNLLIVAALLP*CESSQLLDLGGLVV
Trigger: CACCACCAGACCACCAAGATCAAGCAGCTGGCTGCTTTCACACCACGGGAGGAGGGCCGCTACGATGAGGAGATTGAGGTGTACCGCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS-3UTR CAA 90 bp CTAAGACAAGTTGTTGCCAGCTTCAGGGGGCGGGGCCGAGCCCGGCCCATCTGCTTGCAGAACCAGCAGTaGACCATTGTGTGTGTTGGC +
Preference number: 5 (lower is better)
Translates to: LRQVVASFRGRGRARPICLQNQQ*TIVCVG
Trigger: GCCAACACACACAATGGTCAACTGCTGGTTCTGCAA...GCAGATGGGCCGGGCTCGGCCCCGCCCCCTGAAGCTGGCAACAACTTGTCTTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CAA 90 bp CTAGAGCTGGCAGGAAGCTATGGGGCTATGACAGGGTCTCAGGCCAGAAGCGGTGCCAGCTGCTTGATCTaGGTGGTCTGGTGGTGGCTG +
Preference number: 5 (lower is better)
Translates to: LELAGSYGAMTGSQARSGASCLI*VVWWWL
Trigger: CAGCCACCACCAGACCACCAAGATCAAGCAGCTGGC...ACCGCTTCTGGCCTGAGACCCTGTCATAGCCCCATAGCTTCCTGCCAGCTCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS TCA 90 bp TTGTGTCCCGAGTGTGATTCCTCTGTGGCAGCTGGGGAGACTCAATaGAGAGGCTGCCGTTGGGTGGCGAGAACTCCTCTGAGCTGCTGG +
Preference number: 5 (lower is better)
Translates to: LCPECDSSVAAGETQ*RGCRWVARTPLSCW
Trigger: CCAGCAGCTCAGAGGAGTTCTCGCCACCCAACGGCAGCCTCTTCATTGAGTCTCCCCAGCTGCCACAGAGGAATCACACTCGGGACACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS TCA 90 bp TCTGAGCACCCTTTGGTGGTGGTGTCTACGACGCAGGTGGAGGACTaGGACGACTCGTCCTCTTTCTTGATGGAGTGGCTACTGCGGGCG +
Preference number: 5 (lower is better)
Translates to: SEHPLVVVSTTQVED*DDSSSFLMEWLLRA
Trigger: CGCCCGCAGTAGCCACTCCATCAAGAAAGAGGACGAGTCGTCTCAGTCCTCCACCTGCGTCGTAGACACCACCACCAAAGGGTGCTCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CAA 90 bp GTCAGGGACTTGACCCAGGAGGTCAAGGCAGAGACAGAGCCCCTCGGGGAGGGATTGCAGAACCAGCAGTaGACCATTGTGTGTGTTGGC +
Preference number: 5 (lower is better)
Translates to: VRDLTQEVKAETEPLGEGLQNQQ*TIVCVG
Trigger: GCCAACACACACAATGGTCAACTGCTGGTTCTGCAA...TCCCTCCCCGAGGGGCTCTGTCTCTGCCTTGACCTCCTGGGTCAAGTCCCTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CAA 90 bp ACAGGCCACCTGGGGAGCACCGAGACTGGGGGAGCGGGATGGCTAAGACAGCGATGTACTGTGCTGGGATaGGCTTGTTGTAGTCTCCAT +
Preference number: 5 (lower is better)
Translates to: TGHLGSTETGGAGWLRQRCTVLG*ACCSLH
Trigger: ATGGAGACTACAACAAGCCAATCCCAGCACAGTACA...TCGCTGTCTTAGCCATCCCGCTCCCCCAGTCTCGGTGCTCCCCAGGTGGCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CAA 90 bp GGAAGCTATGGGGCTATGACAGGGTCTCAGGCCAGAAGCGGTGGCAGTGGTGAGACCAGTGTATCGTGGTaGCAGAACCAGCAGTTGACC +
Preference number: 5 (lower is better)
Translates to: GSYGAMTGSQARSGGSGETSVSW*QNQQLT
Trigger: GGTCAACTGCTGGTTCTGCAACCACGATACACTGGT...CTCACCACTGCCACCGCTTCTGGCCTGAGACCCTGTCATAGCCCCATAGCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CAA 90 bp CAGGAAGGCGTTCCTCGTCCTCTCAGACAGCTGTACCCCACAAGGTCAGCAGCAGACGTGGTACTGAACTaGAGTGTGTCTAGCCAGCCG +
Preference number: 5 (lower is better)
Translates to: QEGVPRPLRQLYPTRSAADVVLN*SVSSQP
Trigger: CGGCTGGCTAGACACACTCAAGTTCAGTACCACGTC...TGCTGCTGACCTTGTGGGGTACAGCTGTCTGAGAGGACGAGGAACGCCTTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103208.2
CDS-3UTR CAA 90 bp TTGGTCCCTGCCACAGCTACAGTAGCAGTAGTGTCCCTGGGGCCAGGCAAGCCTTTGCAGAACCAGCAGTaGACCATTGTGTGTGTTGGC +
Preference number: 5 (lower is better)
Translates to: LVPATATVAVVSLGPGKPLQNQQ*TIVCVG
Trigger: GCCAACACACACAATGGTCAACTGCTGGTTCTGCAA...AGGCTTGCCTGGCCCCAGGGACACTACTGCTACTGTAGCTGTGGCAGGGACCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CAA 90 bp CCAGGCTCCATGTGCATCTCTCAGGGGCTTTCTTCATCTTGGTTCTTGGTGGGGGACGTGGTACTGAACTaGAGTGTGTCTAGCCAGCCG +
Preference number: 5 (lower is better)
Translates to: PGSMCISQGLSSSWFLVGDVVLN*SVSSQP
Trigger: CGGCTGGCTAGACACACTCAAGTTCAGTACCACGTC...CCCCACCAAGAACCAAGATGAAGAAAGCCCCTGAGAGATGCACATGGAGCCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS-3UTR CAA 90 bp AGAGGTGTCACCTCCAAGCTGAACCCTTTGTGGCAGCTGGACTCATGGAGTCCTTTCTGTCCTTTCAGGTaGAGCCGTGCAGGGCTGATG +
Preference number: 5 (lower is better)
Translates to: RGVTSKLNPLWQLDSWSPFCPFR*SRAGLM
Trigger: CATCAGCCCTGCACGGCTCAACCTGAAAGGACAGAA...AGGACTCCATGAGTCCAGCTGCCACAAAGGGTTCAGCTTGGAGGTGACACCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS TCA 90 bp GATTCCCATAGGGCACCAGTGTATCGTGGTTGCAGAACCAGCAGTTaGCCATTGTGTGTGTTGGCTTCACCCTCCGCGCAATCCGGTAGA +
Preference number: 5 (lower is better)
Translates to: DSHRAPVYRGCRTSS*PLCVLASPSAQSGR
Trigger: TCTACCGGATTGCGCGGAGGGTGAAGCCAACACACACAATGGTCAACTGCTGGTTCTGCAACCACGATACACTGGTGCCCTATGGGAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS-3UTR CAA 90 bp TGTAGACCAAAGAGGTGTCACCTCCAAGCTGAACCCTTTGTGGCAGCTGGACTCGACTCGTCCTCTTTCTaGATGGAGTGGCTACTGCGG +
Preference number: 5 (lower is better)
Translates to: CRPKRCHLQAEPFVAAGLDSSSF*MEWLLR
Trigger: CCGCAGTAGCCACTCCATCAAGAAAGAGGACGAGTC...GAGTCCAGCTGCCACAAAGGGTTCAGCTTGGAGGTGACACCTCTTTGGTCTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS GCA 90 bp CTTGAAAGCCATTGTACTGCTCACAGTGGGGACAGTCCCAACAGTTaGGATTCCCATAGGGCACCAGTGTATCGTGGTTGCAGAACCAGC +
Preference number: 5 (lower is better)
Translates to: LESHCTAHSGDSPNS*DSHRAPVYRGCRTS
Trigger: GCTGGTTCTGCAACCACGATACACTGGTGCCCTATGGGAATCGCAACTGTTGGGACTGTCCCCACTGTGAGCAGTACAATGGCTTTCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS-3UTR CAA 90 bp GAGATCCCTGGTTTTGGGTTCAGAGTGTCAGCACCAAACACAGTTGATGTTTGCCACGGGCGGCACAGCTaGTACATCTGCTCCAAGTGG +
Preference number: 5 (lower is better)
Translates to: EIPGFGFRVSAPNTVDVCHGRHS*YICSKW
Trigger: CCACTTGGAGCAGATGTACAAGCTGTGCCGCCCGTG...GCAAACATCAACTGTGTTTGGTGCTGACACTCTGAACCCAAAACCAGGGATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS GCA 90 bp ACTGGGCACGCTGCTCACCACGTGGTTCAGGTGTTCCATGTACTGTaGTGGGATTGGCTTGTTGTAGTCTCCATTCTCTTGAAAGCCATT +
Preference number: 5 (lower is better)
Translates to: TGHAAHHVVQVFHVL*WDWLVVVSILLKAI
Trigger: AATGGCTTTCAAGAGAATGGAGACTACAACAAGCCAATCCCAGCACAGTACATGGAACACCTGAACCACGTGGTGAGCAGCGTGCCCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 90 bp GGGCACGCTGCTCACCACGTGGTTCAGGTGTTCCATGTACTGTGCTaGGATTGGCTTGTTGTAGTCTCCATTCTCTTGAAAGCCATTGTA +
Preference number: 5 (lower is better)
Translates to: GHAAHHVVQVFHVLC*DWLVVVSILLKAIV
Trigger: TACAATGGCTTTCAAGAGAATGGAGACTACAACAAGCCAATCCCAGCACAGTACATGGAACACCTGAACCACGTGGTGAGCAGCGTGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS-3UTR CAA 90 bp TGTAGACCAAAGAGGTGTCACCTCCAAGCTGAACCCTTTGTGGCAGCTGGACTCTGTACTGTGCTGGGATaGGCTTGTTGTAGTCTCCAT +
Preference number: 5 (lower is better)
Translates to: CRPKRCHLQAEPFVAAGLCTVLG*ACCSLH
Trigger: ATGGAGACTACAACAAGCCAATCCCAGCACAGTACA...GAGTCCAGCTGCCACAAAGGGTTCAGCTTGGAGGTGACACCTCTTTGGTCTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS CCA 90 bp GCTGCTCACCACGTGGTTCAGGTGTTCCATGTACTGTGCTGGGATTaGCTTGTTGTAGTCTCCATTCTCTTGAAAGCCATTGTACTGCTC +
Preference number: 5 (lower is better)
Translates to: AAHHVVQVFHVLCWD*LVVVSILLKAIVLL
Trigger: GAGCAGTACAATGGCTTTCAAGAGAATGGAGACTACAACAAGCCAATCCCAGCACAGTACATGGAACACCTGAACCACGTGGTGAGCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS-3UTR CAA 90 bp TTCTCTTTAGGTGTTTCCTCAGGGCTGGAGACAAGGATGCTGAGGGACAATTTGTGTACTGTGCTGGGATaGGCTTGTTGTAGTCTCCAT +
Preference number: 5 (lower is better)
Translates to: FSLGVSSGLETRMLRDNLCTVLG*ACCSLH
Trigger: ATGGAGACTACAACAAGCCAATCCCAGCACAGTACA...CAAATTGTCCCTCAGCATCCTTGTCTCCAGCCCTGAGGAAACACCTAAAGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS GCA 72 bp CAGCAGGACCTGGCTGCTCACCCACTGCTGTGGCTGTaGAGGGTCCCGGGGACTGGGCACGCTGCTCACCAC +
Preference number: 6 (lower is better)
Translates to: QQDLAAHPLLWL*RVPGTGHAAHH
Trigger: GTGGTGAGCAGCGTGCCCAGTCCCCGGGACCCTGCACAGCCACAGCAGTGGGTGAGCAGCCAGGTCCTGCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 72 bp TGCCCATGGGCCTGGTCAGCCTCCCGACGCCGGAACTaGTGGCTGAGAAGCAGGGCACGCAGCTGGCGGTTC +
Preference number: 6 (lower is better)
Translates to: CPWAWSASRRRN*WLRSRARSWRF
Trigger: GAACCGCCAGCTGCGTGCCCTGCTTCTCAGCCACCAGTTCCGGCGTCGGGAGGCTGACCAGGCCCATGGGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS TCA 72 bp GGGCCTGGTCAGCCTCCCGACGCCGGAACTGGTGGCTaGGAAGCAGGGCACGCAGCTGGCGGTTCTGGTGTT +
Preference number: 6 (lower is better)
Translates to: GPGQPPDAGTGG*EAGHAAGGSGV
Trigger: AACACCAGAACCGCCAGCTGCGTGCCCTGCTTCTCAGCCACCAGTTCCGGCGTCGGGAGGCTGACCAGGCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS GCA 72 bp CCTGAGAAGTGGTGTTGTCCGAGGCCGCAGAACTGTTaGCCCCAGGAGGTAGGGCTGGGGGCAAGGCAGCCC +
Preference number: 6 (lower is better)
Translates to: PEKWCCPRPQNC*PQEVGLGARQP
Trigger: GGGCTGCCTTGCCCCCAGCCCTACCTCCTGGGGGCAACAGTTCTGCGGCCTCGGACAACACCACTTCTCAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 72 bp GTCTGGTGGTGGCTGCACCTTCGGCACAGCAGGACCTaGCTGCTCACCCACTGCTGTGGCTGTGCAGGGTCC +
Preference number: 6 (lower is better)
Translates to: VWWWLHLRHSRT*LLTHCCGCAGS
Trigger: GGACCCTGCACAGCCACAGCAGTGGGTGAGCAGCCAGGTCCTGCTGTGCCGAAGGTGCAGCCACCACCAGAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 72 bp GACCCAGCAGCTGCTGCCAGCCCTCCGCCTGAGAAGTaGTGTTGTCCGAGGCCGCAGAACTGTTGCCCCCAG +
Preference number: 6 (lower is better)
Translates to: DPAAAASPPPEK*CCPRPQNCCPQ
Trigger: CTGGGGGCAACAGTTCTGCGGCCTCGGACAACACCACTTCTCAGGCGGAGGGCTGGCAGCAGCTGCTGGGTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS TCA 72 bp AACTCACAGCCAGGAGGCCCCGGACCAGGGAGGGACTaGCACGAGCTTTCCAGGGAGTGGTCTCCTCTGAGC +
Preference number: 6 (lower is better)
Translates to: NSQPGGPGPGRD*HELSREWSPLS
Trigger: GCTCAGAGGAGACCACTCCCTGGAAAGCTCGTGTCAGTCCCTCCCTGGTCCGGGGCCTCCTGGCTGTGAGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105687.9
CDS CCA 72 bp AGGCAGGTGAGCAGGCCCACTGCCACAATGCTGGTCTaGTGGCTCTGCCCAAAGGCCCAGGCCTCATGTAGC +
Preference number: 6 (lower is better)
Translates to: RQVSRPTATMLV*WLCPKAQASCS
Trigger: GCTACATGAGGCCTGGGCCTTTGGGCAGAGCCACCAGACCAGCATTGTGGCAGTGGGCCTGCTCACCTGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 72 bp GTCTCCGGAGAAGTACCTTCGGGGCCGGAACCTCCGTaGGCCTGTCGATTTCCTCGTAGCCACAGCTGCGGT +
Preference number: 6 (lower is better)
Translates to: VSGEVPSGPEPP*ACRFPRSHSCG
Trigger: ACCGCAGCTGTGGCTACGAGGAAATCGACAGGCCCACGGAGGTTCCGGCCCCGAAGGTACTTCTCCGGAGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS TCA 72 bp GGCAATAGACCCAGCAGCTGCTGCCAGCCCTCCGCCTaGGAAGTGGTGTTGTCCGAGGCCGCAGAACTGTTG +
Preference number: 6 (lower is better)
Translates to: GNRPSSCCQPSA*EVVLSEAAELL
Trigger: CAACAGTTCTGCGGCCTCGGACAACACCACTTCTCAGGCGGAGGGCTGGCAGCAGCTGCTGGGTCTATTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS GCA 72 bp ACGGCCGCCTGGCACGGGCGGCACAGCTTGTACATCTaGTCCAAGTGGTGGCGGTACACCTCAATCTCCTCA +
Preference number: 6 (lower is better)
Translates to: TAAWHGRHSLYI*SKWWRYTSISS
Trigger: TGAGGAGATTGAGGTGTACCGCCACCACTTGGAGCAGATGTACAAGCTGTGCCGCCCGTGCCAGGCGGCCGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 72 bp TTCACTGCCGAGGAACTGAAACTCTGCCCATGGGCCTaGTCAGCCTCCCGACGCCGGAACTGGTGGCTGAGA +
Preference number: 6 (lower is better)
Translates to: FTAEELKLCPWA*SASRRRNWWLR
Trigger: TCTCAGCCACCAGTTCCGGCGTCGGGAGGCTGACCAGGCCCATGGGCAGAGTTTCAGTTCCTCGGCAGTGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 72 bp CAGGAAGCCAGGTGGGGTGGGGATGAACAGGGATGCTaGCGAGGATGTGACACTTGGGTAGGGCACAGCCAG +
Preference number: 6 (lower is better)
Translates to: QEARWGGDEQGC*RGCDTWVGHSQ
Trigger: CTGGCTGTGCCCTACCCAAGTGTCACATCCTCGCCAGCATCCCTGTTCATCCCCACCCCACCTGGCTTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS TCA 72 bp CGCAGGTGGAGGACTGAGACGACTCGTCCTCTTTCTTaGTGGAGTGGCTACTGCGGGCGCTGTCTCTGGCCA +
Preference number: 6 (lower is better)
Translates to: RRWRTETTRPLS*WSGYCGRCLWP
Trigger: TGGCCAGAGACAGCGCCCGCAGTAGCCACTCCATCAAGAAAGAGGACGAGTCGTCTCAGTCCTCCACCTGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS CAA 72 bp TCCTCCCGTGGTGTGAAAGCAGCCAGCTGCTTGATCTaGGTGGTCTGGTGGTGGCTGCACCTTCGGCACAGC +
Preference number: 6 (lower is better)
Translates to: SSRGVKAASCLI*VVWWWLHLRHS
Trigger: GCTGTGCCGAAGGTGCAGCCACCACCAGACCACCAAGATCAAGCAGCTGGCTGCTTTCACACCACGGGAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS TCA 72 bp GGGACTGACACGAGCTTTCCAGGGAGTGGTCTCCTCTaGGCACCCTTTGGTGGTGGTGTCTACGACGCAGGT +
Preference number: 6 (lower is better)
Translates to: GTDTSFPGSGLL*APFGGGVYDAG
Trigger: ACCTGCGTCGTAGACACCACCACCAAAGGGTGCTCAGAGGAGACCACTCCCTGGAAAGCTCGTGTCAGTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105687.9
CDS CCA 72 bp TCCAGGGAGTGGTCTCCTCTGAGCACCCTTTGGTGGTaGTGTCTACGACGCAGGTGGAGGACTGAGACGACT +
Preference number: 6 (lower is better)
Translates to: SREWSPLSTLWW*CLRRRWRTETT
Trigger: AGTCGTCTCAGTCCTCCACCTGCGTCGTAGACACCACCACCAAAGGGTGCTCAGAGGAGACCACTCCCTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS CCA 72 bp CTTTCCAGGGAGTGGTCTCCTCTGAGCACCCTTTGGTaGTGGTGTCTACGACGCAGGTGGAGGACTGAGACG +
Preference number: 6 (lower is better)
Translates to: LSREWSPLSTLW*WCLRRRWRTET
Trigger: CGTCTCAGTCCTCCACCTGCGTCGTAGACACCACCACCAAAGGGTGCTCAGAGGAGACCACTCCCTGGAAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS CCA 72 bp GACCTTTCCAGGGAGTGGTCTCCTCTGAGCACCCTTTaGTGGTGGTGTCTACGACGCAGGTGGAGGACTGAG +
Preference number: 6 (lower is better)
Translates to: DLSREWSPLSTL*WWCLRRRWRTE
Trigger: CTCAGTCCTCCACCTGCGTCGTAGACACCACCACCAAAGGGTGCTCAGAGGAGACCACTCCCTGGAAAGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054459.11
CDS CCA 72 bp GAGCTTTCCAGGGAGTGGTCTCCTCTGAGCACCCTTTaGTGGTGGTGTCTACGACGCAGGTGGAGGACTGAG +
Preference number: 6 (lower is better)
Translates to: ELSREWSPLSTL*WWCLRRRWRTE
Trigger: CTCAGTCCTCCACCTGCGTCGTAGACACCACCACCAAAGGGTGCTCAGAGGAGACCACTCCCTGGAAAGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105687.9
CDS CAA 90 bp GGGCGCTGTCTCTGGCCAGCATCGACCTCATCTCCATGGTGTGCTTaGTGTCCCGAGTGTGATTCCTCTGTGGCAGCTGGGGAGACTCAA +
Preference number: 6 (lower is better)
Translates to: GRCLWPASTSSPWCA*CPECDSSVAAGETQ
Trigger: TTGAGTCTCCCCAGCTGCCACAGAGGAATCACACTCGGGACACAAAGCACACCATGGAGATGAGGTCGATGCTGGCCAGAGACAGCGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS CAA 72 bp CTCTGGCCAGCATCGACCTCATCTCCATGGTGTGCTTaGTGTCCCGAGTGTGATTCCTCTGTGGCAGCTGGG +
Preference number: 6 (lower is better)
Translates to: LWPASTSSPWCA*CPECDSSVAAG
Trigger: CCCAGCTGCCACAGAGGAATCACACTCGGGACACAAAGCACACCATGGAGATGAGGTCGATGCTGGCCAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS TCA 72 bp AGGGCACCAGTGTATCGTGGTTGCAGAACCAGCAGTTaGCCATTGTGTGTGTTGGCTTCACCCTCCGCGCAA +
Preference number: 6 (lower is better)
Translates to: RAPVYRGCRTSS*PLCVLASPSAQ
Trigger: TTGCGCGGAGGGTGAAGCCAACACACACAATGGTCAACTGCTGGTTCTGCAACCACGATACACTGGTGCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS TCA 72 bp CCTTTGGTGGTGGTGTCTACGACGCAGGTGGAGGACTaGGACGACTCGTCCTCTTTCTTGATGGAGTGGCTA +
Preference number: 6 (lower is better)
Translates to: PLVVVSTTQVED*DDSSSFLMEWL
Trigger: TAGCCACTCCATCAAGAAAGAGGACGAGTCGTCTCAGTCCTCCACCTGCGTCGTAGACACCACCACCAAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS CCA 72 bp CATGGTGTGCTTTGTGTCCCGAGTGTGATTCCTCTGTaGCAGCTGGGGAGACTCAATGAAGAGGCTGCCGTT +
Preference number: 6 (lower is better)
Translates to: HGVLCVPSVIPL*QLGRLNEEAAV
Trigger: AACGGCAGCCTCTTCATTGAGTCTCCCCAGCTGCCACAGAGGAATCACACTCGGGACACAAAGCACACCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS TCA 72 bp GACCTCATCTCCATGGTGTGCTTTGTGTCCCGAGTGTaGTTCCTCTGTGGCAGCTGGGGAGACTCAATGAAG +
Preference number: 6 (lower is better)
Translates to: DLISMVCFVSRV*FLCGSWGDSMK
Trigger: CTTCATTGAGTCTCCCCAGCTGCCACAGAGGAATCACACTCGGGACACAAAGCACACCATGGAGATGAGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054459.11
ENSMUST00000105687.9
CDS GCA 72 bp CATTGTACTGCTCACAGTGGGGACAGTCCCAACAGTTaGGATTCCCATAGGGCACCAGTGTATCGTGGTTGC +
Preference number: 6 (lower is better)
Translates to: HCTAHSGDSPNS*DSHRAPVYRGC
Trigger: GCAACCACGATACACTGGTGCCCTATGGGAATCGCAACTGTTGGGACTGTCCCCACTGTGAGCAGTACAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS GCA 72 bp GCTGCTCACCACGTGGTTCAGGTGTTCCATGTACTGTaGTGGGATTGGCTTGTTGTAGTCTCCATTCTCTTG +
Preference number: 6 (lower is better)
Translates to: AAHHVVQVFHVL*WDWLVVVSILL
Trigger: CAAGAGAATGGAGACTACAACAAGCCAATCCCAGCACAGTACATGGAACACCTGAACCACGTGGTGAGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CAA 90 bp CGCTGCTCACCACGTGGTTCAGGTGTTCCATGTACTGTGCTGGGATaGGCTTGTTGTAGTCTCCATTCTCTTGAAAGCCATTGTACTGCT +
Preference number: 6 (lower is better)
Translates to: RCSPRGSGVPCTVLG*ACCSLHSLESHCTA
Trigger: AGCAGTACAATGGCTTTCAAGAGAATGGAGACTACAACAAGCCAATCCCAGCACAGTACATGGAACACCTGAACCACGTGGTGAGCAGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 72 bp GCTCACCACGTGGTTCAGGTGTTCCATGTACTGTGCTaGGATTGGCTTGTTGTAGTCTCCATTCTCTTGAAA +
Preference number: 6 (lower is better)
Translates to: AHHVVQVFHVLC*DWLVVVSILLK
Trigger: TTTCAAGAGAATGGAGACTACAACAAGCCAATCCCAGCACAGTACATGGAACACCTGAACCACGTGGTGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CAA 72 bp CCACGTGGTTCAGGTGTTCCATGTACTGTGCTGGGATaGGCTTGTTGTAGTCTCCATTCTCTTGAAAGCCAT +
Preference number: 6 (lower is better)
Translates to: PRGSGVPCTVLG*ACCSLHSLESH
Trigger: ATGGCTTTCAAGAGAATGGAGACTACAACAAGCCAATCCCAGCACAGTACATGGAACACCTGAACCACGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9
CDS CCA 72 bp CACGTGGTTCAGGTGTTCCATGTACTGTGCTGGGATTaGCTTGTTGTAGTCTCCATTCTCTTGAAAGCCATT +
Preference number: 6 (lower is better)
Translates to: HVVQVFHVLCWD*LVVVSILLKAI
Trigger: AATGGCTTTCAAGAGAATGGAGACTACAACAAGCCAATCCCAGCACAGTACATGGAACACCTGAACCACGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054459.11
ENSMUST00000103208.2
ENSMUST00000105687.9