RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMEM200C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095407

Ensembl transcript IDs: ENSMUST00000178545.3, ENSMUST00000233019.2

Found 153 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAACGTAATTCAAGGATAATATTCTGCAGCTCTTTGGATATTGAATaGTTTCCTCGGACCTGTCCACAGGGGAATCGGGGTAGGGTGGGT +
Preference number: 1 (lower is better)
Translates to: ERNSRIIFCSSLDIE*FPRTCPQGNRGRVG
Trigger: ACCCACCCTACCCCGATTCCCCTGTGGACAGGTCCGAGGAAACCATTCAATATCCAAAGAGCTGCAGAATATTATCCTTGAATTACGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
3UTR GCA 90 bp TGTACTTGGTCTTGTGAGTTTAAGAATGTCACAATCCAGTGTAGTTaGTGGCGCCCTCTGGTCTTCACATACCCTGGTAGCAAAATTCAA +
Preference number: 1 (lower is better)
Translates to: CTWSCEFKNVTIQCS*WRPLVFTYPGSKIQ
Trigger: TTGAATTTTGCTACCAGGGTATGTGAAGACCAGAGGGCGCCAGCAACTACACTGGATTGTGACATTCTTAAACTCACAAGACCAAGTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
3UTR CCA 90 bp ACTTGGTCTTGTGAGTTTAAGAATGTCACAATCCAGTGTAGTTGCTaGCGCCCTCTGGTCTTCACATACCCTGGTAGCAAAATTCAAATA +
Preference number: 1 (lower is better)
Translates to: TWSCEFKNVTIQCSC*RPLVFTYPGSKIQI
Trigger: TATTTGAATTTTGCTACCAGGGTATGTGAAGACCAGAGGGCGCCAGCAACTACACTGGATTGTGACATTCTTAAACTCACAAGACCAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
3UTR GCA 90 bp AGTTATCTACAGGAAGCTTGTGAACGTAATTCAAGGATAATATTCTaGAGCTCTTTGGATATTGAATGGTTTCCTCGGACCTGTCCACAG +
Preference number: 1 (lower is better)
Translates to: SYLQEACERNSRIIF*SSLDIEWFPRTCPQ
Trigger: CTGTGGACAGGTCCGAGGAAACCATTCAATATCCAAAGAGCTGCAGAATATTATCCTTGAATTACGTTCACAAGCTTCCTGTAGATAACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
3UTR GCA 90 bp AGAAAGTTCAATTCTAAGAGAATTGACACAAACTCTTCTAGACTCTaGAAGAGGGCAGAAATAAAAAGCTTGTTATTCCTTTACAAGCAG +
Preference number: 1 (lower is better)
Translates to: RKFNSKRIDTNSSRL*KRAEIKSLLFLYKQ
Trigger: CTGCTTGTAAAGGAATAACAAGCTTTTTATTTCTGCCCTCTTGCAGAGTCTAGAAGAGTTTGTGTCAATTCTCTTAGAATTGAACTTTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
3UTR-3UTR TCA 90 bp CTTGTGAGTTTAAGAATGTCACAATCCAGTGTAGTTGCTGGCGCCCTCTGGTCTCAGCTCTTTGGATATTaGATGGTTTCCTCGGACCTG +
Preference number: 2 (lower is better)
Translates to: LVSLRMSQSSVVAGALWSQLFGY*MVSSDL
Trigger: CAGGTCCGAGGAAACCATTCAATATCCAAAGAGCTG...AGACCAGAGGGCGCCAGCAACTACACTGGATTGTGACATTCTTAAACTCACAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
3UTR CAA 90 bp GACACAAACTCTTCTAGACTCTGCAAGAGGGCAGAAATAAAAAGCTaGTTATTCCTTTACAAGCAGCTACGGATGAAGTCAGCAGCAGAG +
Preference number: 2 (lower is better)
Translates to: DTNSSRLCKRAEIKS*LFLYKQLRMKSAAE
Trigger: CTCTGCTGCTGACTTCATCCGTAGCTGCTTGTAAAGGAATAACAAGCTTTTTATTTCTGCCCTCTTGCAGAGTCTAGAAGAGTTTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
3UTR-3UTR CCA 90 bp AAGTTCAATTCTAAGAGAATTGACACAAACTCTTCTAGACTCTGCAAGAGGGCAGAAGCTGGGCGGGGCTaGACAAAGAAAAATAGGAGT +
Preference number: 2 (lower is better)
Translates to: KFNSKRIDTNSSRLCKRAEAGRG*TKKNRS
Trigger: ACTCCTATTTTTCTTTGTCCAGCCCCGCCCAGCTTC...TGCCCTCTTGCAGAGTCTAGAAGAGTTTGTGTCAATTCTCTTAGAATTGAACTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
3UTR-3UTR CCA 90 bp AAGTTCAATTCTAAGAGAATTGACACAAACTCTTCTAGACTCTGCAAGAGGGCATCTTTGGATATTGAATaGTTTCCTCGGACCTGTCCA +
Preference number: 2 (lower is better)
Translates to: KFNSKRIDTNSSRLCKRASLDIE*FPRTCP
Trigger: TGGACAGGTCCGAGGAAACCATTCAATATCCAAAGA...TGCCCTCTTGCAGAGTCTAGAAGAGTTTGTGTCAATTCTCTTAGAATTGAACTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
3UTR-3UTR CCA 90 bp ATACATTTGGTTTTCATCGAACGTACAATCACCATCGGACGTAAAAAGACGACTTATTCTGCAGCTCTTTaGATATTGAATGGTTTCCTC +
Preference number: 2 (lower is better)
Translates to: IHLVFIERTITIGRKKTTYSAAL*ILNGFL
Trigger: GAGGAAACCATTCAATATCCAAAGAGCTGCAGAATA...AGTCGTCTTTTTACGTCCGATGGTGATTGTACGTTCGATGAAAACCAAATGTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
3UTR GCA 72 bp TCTTGTGAGTTTAAGAATGTCACAATCCAGTGTAGTTaGTGGCGCCCTCTGGTCTTCACATACCCTGGTAGC +
Preference number: 3 (lower is better)
Translates to: SCEFKNVTIQCS*WRPLVFTYPGS
Trigger: GCTACCAGGGTATGTGAAGACCAGAGGGCGCCAGCAACTACACTGGATTGTGACATTCTTAAACTCACAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
3UTR-3UTR CAA 90 bp CTTGTGAGTTTAAGAATGTCACAATCCAGTGTAGTTGCTGGCGCCCTCTGGTCTGCAGCTCTTTGGATATaGAATGGTTTCCTCGGACCT +
Preference number: 3 (lower is better)
Translates to: LVSLRMSQSSVVAGALWSAALWI*NGFLGP
Trigger: AGGTCCGAGGAAACCATTCAATATCCAAAGAGCTGC...AGACCAGAGGGCGCCAGCAACTACACTGGATTGTGACATTCTTAAACTCACAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
3UTR CCA 72 bp TGTGAGTTTAAGAATGTCACAATCCAGTGTAGTTGCTaGCGCCCTCTGGTCTTCACATACCCTGGTAGCAAA +
Preference number: 3 (lower is better)
Translates to: CEFKNVTIQCSC*RPLVFTYPGSK
Trigger: TTTGCTACCAGGGTATGTGAAGACCAGAGGGCGCCAGCAACTACACTGGATTGTGACATTCTTAAACTCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
3UTR-3UTR CAA 90 bp CTTGTGAGTTTAAGAATGTCACAATCCAGTGTAGTTGCTGGCGCCCTCTGGTCTATATTCTGCAGCTCTTaGGATATTGAATGGTTTCCT +
Preference number: 3 (lower is better)
Translates to: LVSLRMSQSSVVAGALWSIFCSS*DIEWFP
Trigger: AGGAAACCATTCAATATCCAAAGAGCTGCAGAATAT...AGACCAGAGGGCGCCAGCAACTACACTGGATTGTGACATTCTTAAACTCACAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
3UTR GCA 72 bp CAGGAAGCTTGTGAACGTAATTCAAGGATAATATTCTaGAGCTCTTTGGATATTGAATGGTTTCCTCGGACC +
Preference number: 3 (lower is better)
Translates to: QEACERNSRIIF*SSLDIEWFPRT
Trigger: GGTCCGAGGAAACCATTCAATATCCAAAGAGCTGCAGAATATTATCCTTGAATTACGTTCACAAGCTTCCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp TGGATATTGAATGGTTTCCTCGGACCTGTCCACAGGGGAATCGGGGTAGGGTGGGCCAGGCCGCGTACCTaGGGGTCCTGGGCAAGCGGC +
Preference number: 4 (lower is better)
Translates to: WILNGFLGPVHRGIGVGWARPRT*GSWASG
Trigger: GCCGCTTGCCCAGGACCCGCAGGTACGCGGCCTGGC...CCACCCTACCCCGATTCCCCTGTGGACAGGTCCGAGGAAACCATTCAATATCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp TGGATATTGAATGGTTTCCTCGGACCTGTCCACAGGGGAATCGGGGTAGGGTGGCGAGGGAGCTGGTGGTaGTCTGGCGCCCCCAACTCC +
Preference number: 4 (lower is better)
Translates to: WILNGFLGPVHRGIGVGWRGSWW*SGAPNS
Trigger: GGAGTTGGGGGCGCCAGAGCACCACCAGCTCCCTCG...CCACCCTACCCCGATTCCCCTGTGGACAGGTCCGAGGAAACCATTCAATATCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp GGAGCGAGGGAAGCTGGGCGGGGCTGGACAAAGAAAAATAGGAGTAAAGTACAGAGGCTCCGCCCTAGTTaGCCCTGGACTGGGACCCTC +
Preference number: 4 (lower is better)
Translates to: GAREAGRGWTKKNRSKVQRLRPS*PWTGTL
Trigger: GAGGGTCCCAGTCCAGGGCCAACTAGGGCGGAGCCT...CTGTACTTTACTCCTATTTTTCTTTGTCCAGCCCCGCCCAGCTTCCCTCGCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp GGAGCGAGGGAAGCTGGGCGGGGCTGGACAAAGAAAAATAGGAGTAAAGTACAGCGCAGCAGCAGCTGCTaGCAGATCTTTGGCGCGGAG +
Preference number: 4 (lower is better)
Translates to: GAREAGRGWTKKNRSKVQRSSSC*QIFGAE
Trigger: CTCCGCGCCAAAGATCTGGCAGCAGCTGCTGCTGCG...CTGTACTTTACTCCTATTTTTCTTTGTCCAGCCCCGCCCAGCTTCCCTCGCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR TCA 90 bp TGGATATTGAATGGTTTCCTCGGACCTGTCCACAGGGGAATCGGGGTAGGGTGGCATTGCTGCTGTTGCTaGTGGCCCCAATGCGATGGC +
Preference number: 4 (lower is better)
Translates to: WILNGFLGPVHRGIGVGWHCCCC*WPQCDG
Trigger: GCCATCGCATTGGGGCCATCAGCAACAGCAGCAATG...CCACCCTACCCCGATTCCCCTGTGGACAGGTCCGAGGAAACCATTCAATATCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR TCA 90 bp CTTGTGAGTTTAAGAATGTCACAATCCAGTGTAGTTGCTGGCGCCCTCTGGTCTTGGACAGCGCGGAGATaGAGCCAGGTCCGGCGGGGA +
Preference number: 4 (lower is better)
Translates to: LVSLRMSQSSVVAGALWSWTARR*SQVRRG
Trigger: TCCCCGCCGGACCTGGCTTCATCTCCGCGCTGTCCA...AGACCAGAGGGCGCCAGCAACTACACTGGATTGTGACATTCTTAAACTCACAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp GAAGCTGGGCGGGGCTGGACAAAGAAAAATAGGAGTAAAGTACAGAGTTACTGTCCTGCCCCCTGGCGGTaGGTGCTGTCTTCGCGCCCT +
Preference number: 4 (lower is better)
Translates to: EAGRGWTKKNRSKVQSYCPAPWR*VLSSRP
Trigger: AGGGCGCGAAGACAGCACGCACCGCCAGGGGGCAGG...ACAGTAACTCTGTACTTTACTCCTATTTTTCTTTGTCCAGCCCCGCCCAGCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp CTTGTGAGTTTAAGAATGTCACAATCCAGTGTAGTTGCTGGCGCCCTCTGGTCTTCCAGCCCAGTGGGGTaGGGCCATGAACCCCTGGCC +
Preference number: 4 (lower is better)
Translates to: LVSLRMSQSSVVAGALWSSSPVG*GHEPLA
Trigger: GGCCAGGGGTTCATGGCCCCACCCCACTGGGCTGGA...AGACCAGAGGGCGCCAGCAACTACACTGGATTGTGACATTCTTAAACTCACAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp GAAGCTGGGCGGGGCTGGACAAAGAAAAATAGGAGTAAAGTACAGAGTTACTGTGGGCTCGGGCGACGGTaGAGCCCGATAGTCCGGGAG +
Preference number: 4 (lower is better)
Translates to: EAGRGWTKKNRSKVQSYCGLGRR*SPIVRE
Trigger: CTCCCGGACTATCGGGCTCCACCGTCGCCCGAGCCC...ACAGTAACTCTGTACTTTACTCCTATTTTTCTTTGTCCAGCCCCGCCCAGCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR TCA 90 bp GGAGCGAGGGAAGCTGGGCGGGGCTGGACAAAGAAAAATAGGAGTAAAGTACAGTCCCACAAAGGGCAATaGGCCCCGAGATGGAGCACA +
Preference number: 4 (lower is better)
Translates to: GAREAGRGWTKKNRSKVQSHKGQ*APRWST
Trigger: TGTGCTCCATCTCGGGGCTCATTGCCCTTTGTGGGA...CTGTACTTTACTCCTATTTTTCTTTGTCCAGCCCCGCCCAGCTTCCCTCGCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp GCAGCTCTTTGGATATTGAATGGTTTCCTCGGACCTGTCCACAGGGGAATCGGGCTCTGTTGGCGGCGTTaGCTTTTGGCCAGTAGCCCA +
Preference number: 4 (lower is better)
Translates to: AALWILNGFLGPVHRGIGLCWRR*LLASSP
Trigger: TGGGCTACTGGCCAAAAGCCAACGCCGCCAACAGAG...CCCGATTCCCCTGTGGACAGGTCCGAGGAAACCATTCAATATCCAAAGAGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp GAAGCTGGGCGGGGCTGGACAAAGAAAAATAGGAGTAAAGTACAGAGTTACTGTCCACGAGGGAGCTGGTaGTGCTCTGGCGCCCCCAAC +
Preference number: 4 (lower is better)
Translates to: EAGRGWTKKNRSKVQSYCPRGSW*CSGAPN
Trigger: GTTGGGGGCGCCAGAGCACCACCAGCTCCCTCGTGG...ACAGTAACTCTGTACTTTACTCCTATTTTTCTTTGTCCAGCCCCGCCCAGCTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp GAAGCTGGGCGGGGCTGGACAAAGAAAAATAGGAGTAAAGTACAGAGTTACTGTACCCCTGGCCAGCATTaGAGCAGCCCCAAAGGCGTC +
Preference number: 4 (lower is better)
Translates to: EAGRGWTKKNRSKVQSYCTPGQH*SSPKGV
Trigger: GACGCCTTTGGGGCTGCTGCAATGCTGGCCAGGGGT...ACAGTAACTCTGTACTTTACTCCTATTTTTCTTTGTCCAGCCCCGCCCAGCTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp CTGCAAGAGGGCAGAAATAAAAAGCTTGTTATTCCTTTACAAGCAGCTACGGATGCCCGCGCAGCTGCCTaGCTTCAGCTCCAGGCCTCG +
Preference number: 4 (lower is better)
Translates to: LQEGRNKKLVIPLQAATDARAAA*LQLQAS
Trigger: CGAGGCCTGGAGCTGAAGCCAGGCAGCTGCGCGGGC...ATCCGTAGCTGCTTGTAAAGGAATAACAAGCTTTTTATTTCTGCCCTCTTGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp ATTTGGTTTTCATCGAACGTACAATCACCATCGGACGTAAAAAGACGACTTTGTGGCCGCCCTGCCCCCTaGCGGTGCGTGCTGTCTTCG +
Preference number: 4 (lower is better)
Translates to: IWFSSNVQSPSDVKRRLCGRPAP*RCVLSS
Trigger: CGAAGACAGCACGCACCGCCAGGGGGCAGGGCGGCC...ACAAAGTCGTCTTTTTACGTCCGATGGTGATTGTACGTTCGATGAAAACCAAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp ATACATTTGGTTTTCATCGAACGTACAATCACCATCGGACGTAAAAAGACGACTAGTCCGGGAGCCCACTaGTGCTGCGGCGCCGCCAGG +
Preference number: 4 (lower is better)
Translates to: IHLVFIERTITIGRKKTTSPGAH*CCGAAR
Trigger: CCTGGCGGCGCCGCAGCACCAGTGGGCTCCCGGACT...AGTCGTCTTTTTACGTCCGATGGTGATTGTACGTTCGATGAAAACCAAATGTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp ATACATTTGGTTTTCATCGAACGTACAATCACCATCGGACGTAAAAAGACGACTTGCGCTCGAGGAGGGTaGGGGCTCGGGCGACGGTGG +
Preference number: 4 (lower is better)
Translates to: IHLVFIERTITIGRKKTTCARGG*GLGRRW
Trigger: CCACCGTCGCCCGAGCCCCCACCCTCCTCGAGCGCA...AGTCGTCTTTTTACGTCCGATGGTGATTGTACGTTCGATGAAAACCAAATGTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp GGAGCGAGGGAAGCTGGGCGGGGCTGGACAAAGAAAAATAGGAGTAAAGTACAGAGCACAGCTTCAGTTTaGCTTTCACCACCACCACGT +
Preference number: 4 (lower is better)
Translates to: GAREAGRGWTKKNRSKVQSTASV*LSPPPR
Trigger: ACGTGGTGGTGGTGAAAGGCAAACTGAAGCTGTGCT...CTGTACTTTACTCCTATTTTTCTTTGTCCAGCCCCGCCCAGCTTCCCTCGCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp CTGCAAGAGGGCAGAAATAAAAAGCTTGTTATTCCTTTACAAGCAGCTACGGATCAGAGCCCGCGCAGCTaGCTGGCTTCAGCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: LQEGRNKKLVIPLQAATDQSPRS*LASAPG
Trigger: GCCTGGAGCTGAAGCCAGGCAGCTGCGCGGGCTCTG...ATCCGTAGCTGCTTGTAAAGGAATAACAAGCTTTTTATTTCTGCCCTCTTGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp ATATTCTGCAGCTCTTTGGATATTGAATGGTTTCCTCGGACCTGTCCACAGGGGAGCGCTCGCGGTAGATaGTGTACACGGCCTCTGTCA +
Preference number: 4 (lower is better)
Translates to: IFCSSLDIEWFPRTCPQGSARGR*CTRPLS
Trigger: TGACAGAGGCCGTGTACAGCATCTACCGCGAGCGCT...CCCCTGTGGACAGGTCCGAGGAAACCATTCAATATCCAAAGAGCTGCAGAATAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp TGGATATTGAATGGTTTCCTCGGACCTGTCCACAGGGGAATCGGGGTAGGGTGGTCCTTGTTTGTAAACTaGCTCTGCACAGACAGAGGC +
Preference number: 4 (lower is better)
Translates to: WILNGFLGPVHRGIGVGWSLFVN*LCTDRG
Trigger: GCCTCTGTCTGTGCAGAGGCAGTTTACAAACAAGGA...CCACCCTACCCCGATTCCCCTGTGGACAGGTCCGAGGAAACCATTCAATATCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp TGGATATTGAATGGTTTCCTCGGACCTGTCCACAGGGGAATCGGGGTAGGGTGGAGAGTGGCTCTTGGCTaGGTTTTTGTTGCCATTGCT +
Preference number: 4 (lower is better)
Translates to: WILNGFLGPVHRGIGVGWRVALG*VFVAIA
Trigger: AGCAATGGCAACAAAAACCCAGCCAAGAGCCACTCT...CCACCCTACCCCGATTCCCCTGTGGACAGGTCCGAGGAAACCATTCAATATCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp GGAGCGAGGGAAGCTGGGCGGGGCTGGACAAAGAAAAATAGGAGTAAAGTACAGTCCCAGAGTGGCTCTTaGCTGGGTTTTTGTTGCCAT +
Preference number: 4 (lower is better)
Translates to: GAREAGRGWTKKNRSKVQSQSGS*LGFCCH
Trigger: ATGGCAACAAAAACCCAGCCAAGAGCCACTCTGGGA...CTGTACTTTACTCCTATTTTTCTTTGTCCAGCCCCGCCCAGCTTCCCTCGCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp AACTCTTCTAGACTCTGCAAGAGGGCAGAAATAAAAAGCTTGTTATTCCTTTACCGTACCTGCGGGTCCTaGGCAAGCGGCCGCCCTGCC +
Preference number: 4 (lower is better)
Translates to: NSSRLCKRAEIKSLLFLYRTCGS*ASGRPA
Trigger: GGCAGGGCGGCCGCTTGCCCAGGACCCGCAGGTACG...GTAAAGGAATAACAAGCTTTTTATTTCTGCCCTCTTGCAGAGTCTAGAAGAGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR TCA 90 bp AACTCTTCTAGACTCTGCAAGAGGGCAGAAATAAAAAGCTTGTTATTCCTTTACGGGGACCCTGCCTCCTaGGTCTCACCGCTGCCTCCG +
Preference number: 4 (lower is better)
Translates to: NSSRLCKRAEIKSLLFLYGDPAS*VSPLPP
Trigger: CGGAGGCAGCGGTGAGACTCAGGAGGCAGGGTCCCC...GTAAAGGAATAACAAGCTTTTTATTTCTGCCCTCTTGCAGAGTCTAGAAGAGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp CTTGTGAGTTTAAGAATGTCACAATCCAGTGTAGTTGCTGGCGCCCTCTGGTCTCCACGGCCATGGCTATaGCCACCAATAGCACTAGGA +
Preference number: 4 (lower is better)
Translates to: LVSLRMSQSSVVAGALWSPRPWL*PPIALG
Trigger: TCCTAGTGCTATTGGTGGGCATAGCCATGGCCGTGG...AGACCAGAGGGCGCCAGCAACTACACTGGATTGTGACATTCTTAAACTCACAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp CTTGTGAGTTTAAGAATGTCACAATCCAGTGTAGTTGCTGGCGCCCTCTGGTCTTTGGCGCGGAGACTGTaGACGTCGATGACAGTGGAA +
Preference number: 4 (lower is better)
Translates to: LVSLRMSQSSVVAGALWSLARRL*TSMTVE
Trigger: TTCCACTGTCATCGACGTGCACAGTCTCCGCGCCAA...AGACCAGAGGGCGCCAGCAACTACACTGGATTGTGACATTCTTAAACTCACAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp GATCTTTTAATACATTTGGTTTTCATCGAACGTACAATCACCATCGGACGTAAACCCCCAACTCCCGGTTaGGCTGCAGGGCGCCGGGCT +
Preference number: 4 (lower is better)
Translates to: DLLIHLVFIERTITIGRKPPTPG*AAGRRA
Trigger: AGCCCGGCGCCCTGCAGCCCAACCGGGAGTTGGGGG...TTTACGTCCGATGGTGATTGTACGTTCGATGAAAACCAAATGTATTAAAAGATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp AAGTTCAATTCTAAGAGAATTGACACAAACTCTTCTAGACTCTGCAAGAGGGCAGGTCCAGTTCTCCCCTaGGGAGATCCCGGGAGCCGC +
Preference number: 4 (lower is better)
Translates to: KFNSKRIDTNSSRLCKRAGPVLP*GDPGSR
Trigger: GCGGCTCCCGGGATCTCCCCAGGGGAGAACTGGACC...TGCCCTCTTGCAGAGTCTAGAAGAGTTTGTGTCAATTCTCTTAGAATTGAACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp CTTGTGAGTTTAAGAATGTCACAATCCAGTGTAGTTGCTGGCGCCCTCTGGTCTCAATGCGATGGCTACTaGCCACAGGCAGTAACTGCT +
Preference number: 4 (lower is better)
Translates to: LVSLRMSQSSVVAGALWSQCDGY*PQAVTA
Trigger: AGCAGTTACTGCCTGTGGGCAGTAGCCATCGCATTG...AGACCAGAGGGCGCCAGCAACTACACTGGATTGTGACATTCTTAAACTCACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp ATTTGGTTTTCATCGAACGTACAATCACCATCGGACGTAAAAAGACGACTTTGTTCCCCGGGAGGTCTATaGCAGCTGCAGCTTGCGCCC +
Preference number: 4 (lower is better)
Translates to: IWFSSNVQSPSDVKRRLCSPGGL*QLQLAP
Trigger: GGGCGCAAGCTGCAGCTGGCATAGACCTCCCGGGGA...ACAAAGTCGTCTTTTTACGTCCGATGGTGATTGTACGTTCGATGAAAACCAAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp ATTTGGTTTTCATCGAACGTACAATCACCATCGGACGTAAAAAGACGACTTTGTGGGGCCATGAACCCCTaGCCAGCATTGCAGCAGCCC +
Preference number: 4 (lower is better)
Translates to: IWFSSNVQSPSDVKRRLCGAMNP*PALQQP
Trigger: GGGCTGCTGCAATGCTGGCCAGGGGTTCATGGCCCC...ACAAAGTCGTCTTTTTACGTCCGATGGTGATTGTACGTTCGATGAAAACCAAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp GATCTTTTAATACATTTGGTTTTCATCGAACGTACAATCACCATCGGACGTAAAAGCCCACGAGGGAGCTaGTGGTGCTCTGGCGCCCCC +
Preference number: 4 (lower is better)
Translates to: DLLIHLVFIERTITIGRKSPRGS*WCSGAP
Trigger: GGGGGCGCCAGAGCACCACCAGCTCCCTCGTGGGCT...TTTACGTCCGATGGTGATTGTACGTTCGATGAAAACCAAATGTATTAAAAGATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp ATATTCTGCAGCTCTTTGGATATTGAATGGTTTCCTCGGACCTGTCCACAGGGGAGTCTAGCCTTTTCTTaGCCACCACATCCACGACCG +
Preference number: 4 (lower is better)
Translates to: IFCSSLDIEWFPRTCPQGSLAFS*PPHPRP
Trigger: CGGTCGTGGATGTGGTGGCCAAGAAAAGGCTAGACT...CCCCTGTGGACAGGTCCGAGGAAACCATTCAATATCCAAAGAGCTGCAGAATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp ATATTCTGCAGCTCTTTGGATATTGAATGGTTTCCTCGGACCTGTCCACAGGGGGGGGTCTTCTACTCCTaGGGTGTGAGACCTGGAAAT +
Preference number: 4 (lower is better)
Translates to: IFCSSLDIEWFPRTCPQGGVFYS*GVRPGN
Trigger: ATTTCCAGGTCTCACACCCCAGGAGTAGAAGACCCC...CCCCTGTGGACAGGTCCGAGGAAACCATTCAATATCCAAAGAGCTGCAGAATAT
50% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR TCA 90 bp GAAGCTGGGCGGGGCTGGACAAAGAAAAATAGGAGTAAAGTACAGAGTTACTGTCCGCGTTGGCGCAAATaGAGAGGAAGATGCCTATAC +
Preference number: 4 (lower is better)
Translates to: EAGRGWTKKNRSKVQSYCPRWRK*RGRCLY
Trigger: GTATAGGCATCTTCCTCTTCATTTGCGCCAACGCGG...ACAGTAACTCTGTACTTTACTCCTATTTTTCTTTGTCCAGCCCCGCCCAGCTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp CTGCAAGAGGGCAGAAATAAAAAGCTTGTTATTCCTTTACAAGCAGCTACGGATCTGTCCCGATCCCCTTaGAAGGGCAACAGGGCGAAG +
Preference number: 4 (lower is better)
Translates to: LQEGRNKKLVIPLQAATDLSRSP*KGNRAK
Trigger: CTTCGCCCTGTTGCCCTTGCAAGGGGATCGGGACAG...ATCCGTAGCTGCTTGTAAAGGAATAACAAGCTTTTTATTTCTGCCCTCTTGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp GATCTTTTAATACATTTGGTTTTCATCGAACGTACAATCACCATCGGACGTAAACGCCCTAGTTGGCCCTaGACTGGGACCCTCGGGGGA +
Preference number: 4 (lower is better)
Translates to: DLLIHLVFIERTITIGRKRPSWP*TGTLGG
Trigger: TCCCCCGAGGGTCCCAGTCCAGGGCCAACTAGGGCG...TTTACGTCCGATGGTGATTGTACGTTCGATGAAAACCAAATGTATTAAAAGATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp GAAGCTGGGCGGGGCTGGACAAAGAAAAATAGGAGTAAAGTACAGAGTTACTGTTGTAGCCCTTATTGCTaGTGGACTGGTCATCCGACT +
Preference number: 4 (lower is better)
Translates to: EAGRGWTKKNRSKVQSYCCSPYC*WTGHPT
Trigger: AGTCGGATGACCAGTCCAGCAGCAATAAGGGCTACA...ACAGTAACTCTGTACTTTACTCCTATTTTTCTTTGTCCAGCCCCGCCCAGCTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp AACTCTTCTAGACTCTGCAAGAGGGCAGAAATAAAAAGCTTGTTATTCCTTTACCCACAGAACTGGAGTTaGCACCCCCTGGGGTCCCAG +
Preference number: 4 (lower is better)
Translates to: NSSRLCKRAEIKSLLFLYPQNWS*HPLGSQ
Trigger: CTGGGACCCCAGGGGGTGCCAACTCCAGTTCTGTGG...GTAAAGGAATAACAAGCTTTTTATTTCTGCCCTCTTGCAGAGTCTAGAAGAGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp AACTCTTCTAGACTCTGCAAGAGGGCAGAAATAAAAAGCTTGTTATTCCTTTACGGAAGAGGAGGTGGCTaGAGATCTTGCAGGAGGCGG +
Preference number: 4 (lower is better)
Translates to: NSSRLCKRAEIKSLLFLYGRGGG*RSCRRR
Trigger: CCGCCTCCTGCAAGATCTGCAGCCACCTCCTCTTCC...GTAAAGGAATAACAAGCTTTTTATTTCTGCCCTCTTGCAGAGTCTAGAAGAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp ATTTGGTTTTCATCGAACGTACAATCACCATCGGACGTAAAAAGACGACTTTGTCCTGGGGTCCCAGAGTaGCTCTTGGCTGGGTTTTTG +
Preference number: 4 (lower is better)
Translates to: IWFSSNVQSPSDVKRRLCPGVPE*LLAGFL
Trigger: CAAAAACCCAGCCAAGAGCCACTCTGGGACCCCAGG...ACAAAGTCGTCTTTTTACGTCCGATGGTGATTGTACGTTCGATGAAAACCAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp ATACATTTGGTTTTCATCGAACGTACAATCACCATCGGACGTAAAAAGACGACTAGAAGCCCACCGACGTaGAGGAGGAAGAGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: IHLVFIERTITIGRKKTTRSPPT*RRKRKR
Trigger: CCTCTTCCTCTTCCTCCTCCACGTCGGTGGGCTTCT...AGTCGTCTTTTTACGTCCGATGGTGATTGTACGTTCGATGAAAACCAAATGTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp AACTCTTCTAGACTCTGCAAGAGGGCAGAAATAAAAAGCTTGTTATTCCTTTACCAGGCAGTAACTGCTTaGTCCCACCTCTGTTGGCGG +
Preference number: 4 (lower is better)
Translates to: NSSRLCKRAEIKSLLFLYQAVTA*SHLCWR
Trigger: CCGCCAACAGAGGTGGGAGCAAGCAGTTACTGCCTG...GTAAAGGAATAACAAGCTTTTTATTTCTGCCCTCTTGCAGAGTCTAGAAGAGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp GATCTTTTAATACATTTGGTTTTCATCGAACGTACAATCACCATCGGACGTAAAGAGGTCTATGCCAGCTaGAGCTTGCGCCCTCCGAGT +
Preference number: 4 (lower is better)
Translates to: DLLIHLVFIERTITIGRKEVYAS*SLRPPS
Trigger: ACTCGGAGGGCGCAAGCTGCAGCTGGCATAGACCTC...TTTACGTCCGATGGTGATTGTACGTTCGATGAAAACCAAATGTATTAAAAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR GCA 90 bp AAGTTCAATTCTAAGAGAATTGACACAAACTCTTCTAGACTCTGCAAGAGGGCAGGGTGTAGCCCTTATTaGTGCTGGACTGGTCATCCG +
Preference number: 4 (lower is better)
Translates to: KFNSKRIDTNSSRLCKRAGCSPY*CWTGHP
Trigger: CGGATGACCAGTCCAGCAGCAATAAGGGCTACACCC...TGCCCTCTTGCAGAGTCTAGAAGAGTTTGTGTCAATTCTCTTAGAATTGAACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp AACTCTTCTAGACTCTGCAAGAGGGCAGAAATAAAAAGCTTGTTATTCCTTTACAGCCCACCACGGCCATaGCTATGCCCACCAATAGCA +
Preference number: 4 (lower is better)
Translates to: NSSRLCKRAEIKSLLFLYSPPRP*LCPPIA
Trigger: TGCTATTGGTGGGCATAGCCATGGCCGTGGTGGGCT...GTAAAGGAATAACAAGCTTTTTATTTCTGCCCTCTTGCAGAGTCTAGAAGAGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR TCA 90 bp AACTCTTCTAGACTCTGCAAGAGGGCAGAAATAAAAAGCTTGTTATTCCTTTACGACTGTGCACGTCGATaGCAGTGGAATAGAGGTCCC +
Preference number: 4 (lower is better)
Translates to: NSSRLCKRAEIKSLLFLYDCARR*QWNRGP
Trigger: GGGACCTCTATTCCACTGTCATCGACGTGCACAGTC...GTAAAGGAATAACAAGCTTTTTATTTCTGCCCTCTTGCAGAGTCTAGAAGAGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CCA 90 bp ATACATTTGGTTTTCATCGAACGTACAATCACCATCGGACGTAAAAAGACGACTAGCCCTTATTGCTGCTaGACTGGTCATCCGACTGAG +
Preference number: 4 (lower is better)
Translates to: IHLVFIERTITIGRKKTTSPYCC*TGHPTE
Trigger: CTCAGTCGGATGACCAGTCCAGCAGCAATAAGGGCT...AGTCGTCTTTTTACGTCCGATGGTGATTGTACGTTCGATGAAAACCAAATGTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
3UTR CAA 72 bp TCTTCTAGACTCTGCAAGAGGGCAGAAATAAAAAGCTaGTTATTCCTTTACAAGCAGCTACGGATGAAGTCA +
Preference number: 4 (lower is better)
Translates to: SSRLCKRAEIKS*LFLYKQLRMKS
Trigger: TGACTTCATCCGTAGCTGCTTGTAAAGGAATAACAAGCTTTTTATTTCTGCCCTCTTGCAGAGTCTAGAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 90 bp CGCCGCCAGGCCGCGTACCTGCGGGTCCTGGGCAAGCGGCCGCCCTaGCCCCTGGCGGTGCGTGCTGTCTTCGCGCCCTCGGGCTCCCCG +
Preference number: 5 (lower is better)
Translates to: RRQAAYLRVLGKRPP*PLAVRAVFAPSGSP
Trigger: CGGGGAGCCCGAGGGCGCGAAGACAGCACGCACCGCCAGGGGGCAGGGCGGCCGCTTGCCCAGGACCCGCAGGTACGCGGCCTGGCGGCG
80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 90 bp AGTCCGGGAGCCCACTGGTGCTGCGGCGCCGCCAGGCCGCGTACCTaGGGGTCCTGGGCAAGCGGCCGCCCTGCCCCCTGGCGGTGCGTG +
Preference number: 5 (lower is better)
Translates to: SPGAHWCCGAARPRT*GSWASGRPAPWRCV
Trigger: CACGCACCGCCAGGGGGCAGGGCGGCCGCTTGCCCAGGACCCGCAGGTACGCGGCCTGGCGGCGCCGCAGCACCAGTGGGCTCCCGGACT
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 90 bp AGGCCGCGTACCTGCGGGTCCTGGGCAAGCGGCCGCCCTGCCCCCTaGCGGTGCGTGCTGTCTTCGCGCCCTCGGGCTCCCCGGGCTCGC +
Preference number: 5 (lower is better)
Translates to: RPRTCGSWASGRPAP*RCVLSSRPRAPRAR
Trigger: GCGAGCCCGGGGAGCCCGAGGGCGCGAAGACAGCACGCACCGCCAGGGGGCAGGGCGGCCGCTTGCCCAGGACCCGCAGGTACGCGGCCT
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 90 bp GCCCACTGGTGCTGCGGCGCCGCCAGGCCGCGTACCTGCGGGTCCTaGGCAAGCGGCCGCCCTGCCCCCTGGCGGTGCGTGCTGTCTTCG +
Preference number: 5 (lower is better)
Translates to: AHWCCGAARPRTCGS*ASGRPAPWRCVLSS
Trigger: CGAAGACAGCACGCACCGCCAGGGGGCAGGGCGGCCGCTTGCCCAGGACCCGCAGGTACGCGGCCTGGCGGCGCCGCAGCACCAGTGGGC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 90 bp GCTCGGGCGACGGTGGAGCCCGATAGTCCGGGAGCCCACTGGTGCTaGGGCGCCGCCAGGCCGCGTACCTGCGGGTCCTGGGCAAGCGGC +
Preference number: 5 (lower is better)
Translates to: ARATVEPDSPGAHWC*GAARPRTCGSWASG
Trigger: GCCGCTTGCCCAGGACCCGCAGGTACGCGGCCTGGCGGCGCCGCAGCACCAGTGGGCTCCCGGACTATCGGGCTCCACCGTCGCCCGAGC
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 90 bp GGGGCTCGGGCGACGGTGGAGCCCGATAGTCCGGGAGCCCACTGGTaGTGCGGCGCCGCCAGGCCGCGTACCTGCGGGTCCTGGGCAAGC +
Preference number: 5 (lower is better)
Translates to: GARATVEPDSPGAHW*CGAARPRTCGSWAS
Trigger: GCTTGCCCAGGACCCGCAGGTACGCGGCCTGGCGGCGCCGCAGCACCAGTGGGCTCCCGGACTATCGGGCTCCACCGTCGCCCGAGCCCC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 90 bp GTGGGGGCTCGGGCGACGGTGGAGCCCGATAGTCCGGGAGCCCACTaGTGCTGCGGCGCCGCCAGGCCGCGTACCTGCGGGTCCTGGGCA +
Preference number: 5 (lower is better)
Translates to: VGARATVEPDSPGAH*CCGAARPRTCGSWA
Trigger: TGCCCAGGACCCGCAGGTACGCGGCCTGGCGGCGCCGCAGCACCAGTGGGCTCCCGGACTATCGGGCTCCACCGTCGCCCGAGCCCCCAC
77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 90 bp ACAGGGCGAAGGCGCTCAGCGAGGAGCCCACGAGGGAGCTGGTGGTaGTCTGGCGCCCCCAACTCCCGGTTGGGCTGCAGGGCGCCGGGC +
Preference number: 5 (lower is better)
Translates to: TGRRRSARSPRGSWW*SGAPNSRLGCRAPG
Trigger: GCCCGGCGCCCTGCAGCCCAACCGGGAGTTGGGGGCGCCAGAGCACCACCAGCTCCCTCGTGGGCTCCTCGCTGAGCGCCTTCGCCCTGT
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 90 bp GCGAAGGCGCTCAGCGAGGAGCCCACGAGGGAGCTGGTGGTGCTCTaGCGCCCCCAACTCCCGGTTGGGCTGCAGGGCGCCGGGCTGCTG +
Preference number: 5 (lower is better)
Translates to: AKALSEEPTRELVVL*RPQLPVGLQGAGLL
Trigger: CAGCAGCCCGGCGCCCTGCAGCCCAACCGGGAGTTGGGGGCGCCAGAGCACCACCAGCTCCCTCGTGGGCTCCTCGCTGAGCGCCTTCGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 90 bp GCAACAGGGCGAAGGCGCTCAGCGAGGAGCCCACGAGGGAGCTGGTaGTGCTCTGGCGCCCCCAACTCCCGGTTGGGCTGCAGGGCGCCG +
Preference number: 5 (lower is better)
Translates to: ATGRRRSARSPRGSW*CSGAPNSRLGCRAP
Trigger: CGGCGCCCTGCAGCCCAACCGGGAGTTGGGGGCGCCAGAGCACCACCAGCTCCCTCGTGGGCTCCTCGCTGAGCGCCTTCGCCCTGTTGC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 90 bp AGGGCAACAGGGCGAAGGCGCTCAGCGAGGAGCCCACGAGGGAGCTaGTGGTGCTCTGGCGCCCCCAACTCCCGGTTGGGCTGCAGGGCG +
Preference number: 5 (lower is better)
Translates to: RATGRRRSARSPRGS*WCSGAPNSRLGCRA
Trigger: CGCCCTGCAGCCCAACCGGGAGTTGGGGGCGCCAGAGCACCACCAGCTCCCTCGTGGGCTCCTCGCTGAGCGCCTTCGCCCTGTTGCCCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS TCA 90 bp CACGGCCTCTGTCAGACTTGGGGGCTCCCGTGGACAGCGCGGAGATaGAGCCAGGTCCGGCGGGGACCCTGCCTCCTGAGTCTCACCGCT +
Preference number: 5 (lower is better)
Translates to: HGLCQTWGLPWTARR*SQVRRGPCLLSLTA
Trigger: AGCGGTGAGACTCAGGAGGCAGGGTCCCCGCCGGACCTGGCTTCATCTCCGCGCTGTCCACGGGAGCCCCCAAGTCTGACAGAGGCCGTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 90 bp CTGCAGCTTGCGCCCTCCGAGTCCCCGTCTCTGTCCCGATCCCCTTaGAAGGGCAACAGGGCGAAGGCGCTCAGCGAGGAGCCCACGAGG +
Preference number: 5 (lower is better)
Translates to: LQLAPSESPSLSRSP*KGNRAKALSEEPTR
Trigger: CCTCGTGGGCTCCTCGCTGAGCGCCTTCGCCCTGTTGCCCTTGCAAGGGGATCGGGACAGAGACGGGGACTCGGAGGGCGCAAGCTGCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 90 bp CTGTGGTCCGGCGATGGCCAGCCCTACTGGAGCGCTCGCGGTAGATaGTGTACACGGCCTCTGTCAGACTTGGGGGCTCCCGTGGACAGC +
Preference number: 5 (lower is better)
Translates to: LWSGDGQPYWSARGR*CTRPLSDLGAPVDS
Trigger: GCTGTCCACGGGAGCCCCCAAGTCTGACAGAGGCCGTGTACAGCATCTACCGCGAGCGCTCCAGTAGGGCTGGCCATCGCCGGACCACAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 90 bp CTGCAGATCTTGCAGGAGGCGGACTCCAGGGCCCGCCCACAGAACTaGAGTTGGCACCCCCTGGGGTCCCAGAGTGGCTCTTGGCTGGGT +
Preference number: 5 (lower is better)
Translates to: LQILQEADSRARPQN*SWHPLGSQSGSWLG
Trigger: ACCCAGCCAAGAGCCACTCTGGGACCCCAGGGGGTGCCAACTCCAGTTCTGTGGGCGGGCCCTGGAGTCCGCCTCCTGCAAGATCTGCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 90 bp CCGCAGCCACCGCGGCAACTGTGGTCCGGCGATGGCCAGCCCTACTaGAGCGCTCGCGGTAGATGCTGTACACGGCCTCTGTCAGACTTG +
Preference number: 5 (lower is better)
Translates to: PQPPRQLWSGDGQPY*SARGRCCTRPLSDL
Trigger: CAAGTCTGACAGAGGCCGTGTACAGCATCTACCGCGAGCGCTCCAGTAGGGCTGGCCATCGCCGGACCACAGTTGCCGCGGTGGCTGCGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 90 bp CATTGCAGCAGCCCCAAAGGCGTCCGCAGAGCCCGCGCAGCTGCCTaGCTTCAGCTCCAGGCCTCGAGATTGCACGTAGCTGAGAAAGCC +
Preference number: 5 (lower is better)
Translates to: HCSSPKGVRRARAAA*LQLQASRLHVAEKA
Trigger: GGCTTTCTCAGCTACGTGCAATCTCGAGGCCTGGAGCTGAAGCCAGGCAGCTGCGCGGGCTCTGCGGACGCCTTTGGGGCTGCTGCAATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 90 bp TGCCCACAGGCAGTAACTGCTTGCTCCCACCTCTGTTGGCGGCGTTaGCTTTTGGCCAGTAGCCCACCACGGCCATGGCTATGCCCACCA +
Preference number: 5 (lower is better)
Translates to: CPQAVTACSHLCWRR*LLASSPPRPWLCPP
Trigger: TGGTGGGCATAGCCATGGCCGTGGTGGGCTACTGGCCAAAAGCCAACGCCGCCAACAGAGGTGGGAGCAAGCAGTTACTGCCTGTGGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 90 bp TGTAAACTGCCTCTGCACAGACAGAGGCTCCGCCCTAGTTGGCCCTaGACTGGGACCCTCGGGGGAGCTGTGCTCAGTACTGGGATCTGT +
Preference number: 5 (lower is better)
Translates to: CKLPLHRQRLRPSWP*TGTLGGAVLSTGIC
Trigger: ACAGATCCCAGTACTGAGCACAGCTCCCCCGAGGGTCCCAGTCCAGGGCCAACTAGGGCGGAGCCTCTGTCTGTGCAGAGGCAGTTTACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 90 bp CTTGTTTGTAAACTGCCTCTGCACAGACAGAGGCTCCGCCCTAGTTaGCCCTGGACTGGGACCCTCGGGGGAGCTGTGCTCAGTACTGGG +
Preference number: 5 (lower is better)
Translates to: LVCKLPLHRQRLRPS*PWTGTLGGAVLSTG
Trigger: CCCAGTACTGAGCACAGCTCCCCCGAGGGTCCCAGTCCAGGGCCAACTAGGGCGGAGCCTCTGTCTGTGCAGAGGCAGTTTACAAACAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CAA 90 bp GGAGCGAGGGAAGCTGGGCGGGGCTGGACAAAGAAAAATAGGAGTAAAGTACAGAACCCCTGGCCAGCATaGCAGCAGCCCCAAAGGCGT +
Preference number: 5 (lower is better)
Translates to: GAREAGRGWTKKNRSKVQNPWPA*QQPQRR
Trigger: ACGCCTTTGGGGCTGCTGCAATGCTGGCCAGGGGTT...CTGTACTTTACTCCTATTTTTCTTTGTCCAGCCCCGCCCAGCTTCCCTCGCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS TCA 90 bp CAGAGTGGCTCTTGGCTGGGTTTTTGTTGCCATTGCTGCTGTTGCTaGTGGCCCCAATGCGATGGCTACTGCCCACAGGCAGTAACTGCT +
Preference number: 5 (lower is better)
Translates to: QSGSWLGFCCHCCCC*WPQCDGYCPQAVTA
Trigger: AGCAGTTACTGCCTGTGGGCAGTAGCCATCGCATTGGGGCCATCAGCAACAGCAGCAATGGCAACAAAAACCCAGCCAAGAGCCACTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 90 bp GACCTGGAAATGAGGAAGAGTTTCTCCTTGTTTGTAAACTGCCTCTaGACAGACAGAGGCTCCGCCCTAGTTGGCCCTGGACTGGGACCC +
Preference number: 5 (lower is better)
Translates to: DLEMRKSFSLFVNCL*TDRGSALVGPGLGP
Trigger: GGGTCCCAGTCCAGGGCCAACTAGGGCGGAGCCTCTGTCTGTGCAGAGGCAGTTTACAAACAAGGAGAAACTCTTCCTCATTTCCAGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CAA 90 bp CTTGTGAGTTTAAGAATGTCACAATCCAGTGTAGTTGCTGGCGCCCTCTGGTCTTATGCCAGCTGCAGCTaGCGCCCTCCGAGTCCCCGT +
Preference number: 5 (lower is better)
Translates to: LVSLRMSQSSVVAGALWSYASCS*RPPSPR
Trigger: ACGGGGACTCGGAGGGCGCAAGCTGCAGCTGGCATA...AGACCAGAGGGCGCCAGCAACTACACTGGATTGTGACATTCTTAAACTCACAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS TCA 90 bp CCATGGCTATGCCCACCAATAGCACTAGGATCCCACAAAGGGCAATaGGCCCCGAGATGGAGCACAGCTTCAGTTTGCCTTTCACCACCA +
Preference number: 5 (lower is better)
Translates to: PWLCPPIALGSHKGQ*APRWSTASVCLSPP
Trigger: TGGTGGTGAAAGGCAAACTGAAGCTGTGCTCCATCTCGGGGCTCATTGCCCTTTGTGGGATCCTAGTGCTATTGGTGGGCATAGCCATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CAA 90 bp GCAGCTCTTTGGATATTGAATGGTTTCCTCGGACCTGTCCACAGGGGAATCGGGTTGGCTGGGTTTTTGTaGCCATTGCTGCTGTTGCTG +
Preference number: 5 (lower is better)
Translates to: AALWILNGFLGPVHRGIGLAGFL*PLLLLL
Trigger: CAGCAACAGCAGCAATGGCAACAAAAACCCAGCCAA...CCCGATTCCCCTGTGGACAGGTCCGAGGAAACCATTCAATATCCAAAGAGCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CAA 90 bp ATATTCTGCAGCTCTTTGGATATTGAATGGTTTCCTCGGACCTGTCCACAGGGGTTCTTGGCTTTCCTCTaGCGCTTAGGGACCTGGCTG +
Preference number: 5 (lower is better)
Translates to: IFCSSLDIEWFPRTCPQGFLAFL*RLGTWL
Trigger: CAGCCAGGTCCCTAAGCGCAAGAGGAAAGCCAAGAA...CCCCTGTGGACAGGTCCGAGGAAACCATTCAATATCCAAAGAGCTGCAGAATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CAA 90 bp GAAGCTGGGCGGGGCTGGACAAAGAAAAATAGGAGTAAAGTACAGAGTTACTGTACAGGCAGTAACTGCTaGCTCCCACCTCTGTTGGCG +
Preference number: 5 (lower is better)
Translates to: EAGRGWTKKNRSKVQSYCTGSNC*LPPLLA
Trigger: CGCCAACAGAGGTGGGAGCAAGCAGTTACTGCCTGT...ACAGTAACTCTGTACTTTACTCCTATTTTTCTTTGTCCAGCCCCGCCCAGCTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CAA 90 bp GAAGCTGGGCGGGGCTGGACAAAGAAAAATAGGAGTAAAGTACAGAGTTACTGTCTCCAGGCCTCGAGATaGCACGTAGCTGAGAAAGCC +
Preference number: 5 (lower is better)
Translates to: EAGRGWTKKNRSKVQSYCLQASR*HVAEKA
Trigger: GGCTTTCTCAGCTACGTGCAATCTCGAGGCCTGGAG...ACAGTAACTCTGTACTTTACTCCTATTTTTCTTTGTCCAGCCCCGCCCAGCTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CAA 90 bp GGAGCGAGGGAAGCTGGGCGGGGCTGGACAAAGAAAAATAGGAGTAAAGTACAGTTTTTACGCCTCTTCTaGGCTTTCCTCTTGCGCTTA +
Preference number: 5 (lower is better)
Translates to: GAREAGRGWTKKNRSKVQFLRLF*AFLLRL
Trigger: TAAGCGCAAGAGGAAAGCCAAGAAGAGGCGTAAAAA...CTGTACTTTACTCCTATTTTTCTTTGTCCAGCCCCGCCCAGCTTCCCTCGCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CAA 90 bp AAGTTCAATTCTAAGAGAATTGACACAAACTCTTCTAGACTCTGCAAGAGGGCATGGCGGCGTTGGCTTTaGGCCAGTAGCCCACCACGG +
Preference number: 5 (lower is better)
Translates to: KFNSKRIDTNSSRLCKRAWRRWL*ASSPPR
Trigger: CCGTGGTGGGCTACTGGCCAAAAGCCAACGCCGCCA...TGCCCTCTTGCAGAGTCTAGAAGAGTTTGTGTCAATTCTCTTAGAATTGAACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CAA 90 bp AACTCTTCTAGACTCTGCAAGAGGGCAGAAATAAAAAGCTTGTTATTCCTTTACCGGCCTCTGTCAGACTaGGGGGCTCCCGTGGACAGC +
Preference number: 5 (lower is better)
Translates to: NSSRLCKRAEIKSLLFLYRPLSD*GAPVDS
Trigger: GCTGTCCACGGGAGCCCCCAAGTCTGACAGAGGCCG...GTAAAGGAATAACAAGCTTTTTATTTCTGCCCTCTTGCAGAGTCTAGAAGAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CAA 90 bp CTGCAAGAGGGCAGAAATAAAAAGCTTGTTATTCCTTTACAAGCAGCTACGGATGTCCCAGAGTGGCTCTaGGCTGGGTTTTTGTTGCCA +
Preference number: 5 (lower is better)
Translates to: LQEGRNKKLVIPLQAATDVPEWL*AGFLLP
Trigger: TGGCAACAAAAACCCAGCCAAGAGCCACTCTGGGAC...ATCCGTAGCTGCTTGTAAAGGAATAACAAGCTTTTTATTTCTGCCCTCTTGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CAA 90 bp ATATTCTGCAGCTCTTTGGATATTGAATGGTTTCCTCGGACCTGTCCACAGGGGAGGAAGAGTTTCTCCTaGTTTGTAAACTGCCTCTGC +
Preference number: 5 (lower is better)
Translates to: IFCSSLDIEWFPRTCPQGRKSFS*FVNCLC
Trigger: GCAGAGGCAGTTTACAAACAAGGAGAAACTCTTCCT...CCCCTGTGGACAGGTCCGAGGAAACCATTCAATATCCAAAGAGCTGCAGAATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CAA 90 bp AAGTTCAATTCTAAGAGAATTGACACAAACTCTTCTAGACTCTGCAAGAGGGCAGAGCACAGCTTCAGTTaGCCTTTCACCACCACCACG +
Preference number: 5 (lower is better)
Translates to: KFNSKRIDTNSSRLCKRAEHSFS*PFTTTT
Trigger: CGTGGTGGTGGTGAAAGGCAAACTGAAGCTGTGCTC...TGCCCTCTTGCAGAGTCTAGAAGAGTTTGTGTCAATTCTCTTAGAATTGAACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CAA 90 bp AAGTTCAATTCTAAGAGAATTGACACAAACTCTTCTAGACTCTGCAAGAGGGCATTGCCATTGCTGCTGTaGCTGATGGCCCCAATGCGA +
Preference number: 5 (lower is better)
Translates to: KFNSKRIDTNSSRLCKRALPLLL*LMAPMR
Trigger: TCGCATTGGGGCCATCAGCAACAGCAGCAATGGCAA...TGCCCTCTTGCAGAGTCTAGAAGAGTTTGTGTCAATTCTCTTAGAATTGAACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CAA 90 bp CTGCAAGAGGGCAGAAATAAAAAGCTTGTTATTCCTTTACAAGCAGCTACGGATGGGTTTTTGTTGCCATaGCTGCTGTTGCTGATGGCC +
Preference number: 5 (lower is better)
Translates to: LQEGRNKKLVIPLQAATDGFLLP*LLLLMA
Trigger: GGCCATCAGCAACAGCAGCAATGGCAACAAAAACCC...ATCCGTAGCTGCTTGTAAAGGAATAACAAGCTTTTTATTTCTGCCCTCTTGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CAA 90 bp ATACATTTGGTTTTCATCGAACGTACAATCACCATCGGACGTAAAAAGACGACTTCATGGAGCACCGCGTaGGCGCAAATGAAGAGGAAG +
Preference number: 5 (lower is better)
Translates to: IHLVFIERTITIGRKKTTSWSTA*AQMKRK
Trigger: CTTCCTCTTCATTTGCGCCAACGCGGTGCTCCATGA...AGTCGTCTTTTTACGTCCGATGGTGATTGTACGTTCGATGAAAACCAAATGTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS-3UTR CAA 90 bp ATACATTTGGTTTTCATCGAACGTACAATCACCATCGGACGTAAAAAGACGACTCTCTTGGCTGGGTTTTaGTTGCCATTGCTGCTGTTG +
Preference number: 5 (lower is better)
Translates to: IHLVFIERTITIGRKKTTLLAGF*LPLLLL
Trigger: CAACAGCAGCAATGGCAACAAAAACCCAGCCAAGAG...AGTCGTCTTTTTACGTCCGATGGTGATTGTACGTTCGATGAAAACCAAATGTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 72 bp TGGTGGTGCTCTGGCGCCCCCAACTCCCGGTTGGGCTaGAGGGCGCCGGGCTGCTGCCGCCGCTGGCAGCCG +
Preference number: 6 (lower is better)
Translates to: WWCSGAPNSRLG*RAPGCCRRWQP
Trigger: CGGCTGCCAGCGGCGGCAGCAGCCCGGCGCCCTGCAGCCCAACCGGGAGTTGGGGGCGCCAGAGCACCACCA
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp GGAGCTGGTGGTGCTCTGGCGCCCCCAACTCCCGGTTaGGCTGCAGGGCGCCGGGCTGCTGCCGCCGCTGGC +
Preference number: 6 (lower is better)
Translates to: GAGGALAPPTPG*AAGRRAAAAAG
Trigger: GCCAGCGGCGGCAGCAGCCCGGCGCCCTGCAGCCCAACCGGGAGTTGGGGGCGCCAGAGCACCACCAGCTCC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp ACCTGCGGGTCCTGGGCAAGCGGCCGCCCTGCCCCCTaGCGGTGCGTGCTGTCTTCGCGCCCTCGGGCTCCC +
Preference number: 6 (lower is better)
Translates to: TCGSWASGRPAP*RCVLSSRPRAP
Trigger: GGGAGCCCGAGGGCGCGAAGACAGCACGCACCGCCAGGGGGCAGGGCGGCCGCTTGCCCAGGACCCGCAGGT
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp CGGGCGACGGTGGAGCCCGATAGTCCGGGAGCCCACTaGTGCTGCGGCGCCGCCAGGCCGCGTACCTGCGGG +
Preference number: 6 (lower is better)
Translates to: RATVEPDSPGAH*CCGAARPRTCG
Trigger: CCCGCAGGTACGCGGCCTGGCGGCGCCGCAGCACCAGTGGGCTCCCGGACTATCGGGCTCCACCGTCGCCCG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 72 bp GCGACGGTGGAGCCCGATAGTCCGGGAGCCCACTGGTaGTGCGGCGCCGCCAGGCCGCGTACCTGCGGGTCC +
Preference number: 6 (lower is better)
Translates to: ATVEPDSPGAHW*CGAARPRTCGS
Trigger: GGACCCGCAGGTACGCGGCCTGGCGGCGCCGCAGCACCAGTGGGCTCCCGGACTATCGGGCTCCACCGTCGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 72 bp ACGGTGGAGCCCGATAGTCCGGGAGCCCACTGGTGCTaGGGCGCCGCCAGGCCGCGTACCTGCGGGTCCTGG +
Preference number: 6 (lower is better)
Translates to: TVEPDSPGAHWC*GAARPRTCGSW
Trigger: CCAGGACCCGCAGGTACGCGGCCTGGCGGCGCCGCAGCACCAGTGGGCTCCCGGACTATCGGGCTCCACCGT
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp CTCAGCGAGGAGCCCACGAGGGAGCTGGTGGTGCTCTaGCGCCCCCAACTCCCGGTTGGGCTGCAGGGCGCC +
Preference number: 6 (lower is better)
Translates to: LSEEPTRELVVL*RPQLPVGLQGA
Trigger: GGCGCCCTGCAGCCCAACCGGGAGTTGGGGGCGCCAGAGCACCACCAGCTCCCTCGTGGGCTCCTCGCTGAG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp GGGCGAAGGCGCTCAGCGAGGAGCCCACGAGGGAGCTaGTGGTGCTCTGGCGCCCCCAACTCCCGGTTGGGC +
Preference number: 6 (lower is better)
Translates to: GRRRSARSPRGS*WCSGAPNSRLG
Trigger: GCCCAACCGGGAGTTGGGGGCGCCAGAGCACCACCAGCTCCCTCGTGGGCTCCTCGCTGAGCGCCTTCGCCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp CTCTGCGCTCGAGGAGGGTGGGGGCTCGGGCGACGGTaGAGCCCGATAGTCCGGGAGCCCACTGGTGCTGCG +
Preference number: 6 (lower is better)
Translates to: LCARGGWGLGRR*SPIVREPTGAA
Trigger: CGCAGCACCAGTGGGCTCCCGGACTATCGGGCTCCACCGTCGCCCGAGCCCCCACCCTCCTCGAGCGCAGAG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 72 bp AGGCGCTCAGCGAGGAGCCCACGAGGGAGCTGGTGGTaGTCTGGCGCCCCCAACTCCCGGTTGGGCTGCAGG +
Preference number: 6 (lower is better)
Translates to: RRSARSPRGSWW*SGAPNSRLGCR
Trigger: CCTGCAGCCCAACCGGGAGTTGGGGGCGCCAGAGCACCACCAGCTCCCTCGTGGGCTCCTCGCTGAGCGCCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 72 bp CCCGGGAGCCGCGTTCCCCGGGAGGTCTATGCCAGCTaGAGCTTGCGCCCTCCGAGTCCCCGTCTCTGTCCC +
Preference number: 6 (lower is better)
Translates to: PGSRVPREVYAS*SLRPPSPRLCP
Trigger: GGGACAGAGACGGGGACTCGGAGGGCGCAAGCTGCAGCTGGCATAGACCTCCCGGGGAACGCGGCTCCCGGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp CGAAGGCGCTCAGCGAGGAGCCCACGAGGGAGCTGGTaGTGCTCTGGCGCCCCCAACTCCCGGTTGGGCTGC +
Preference number: 6 (lower is better)
Translates to: RRRSARSPRGSW*CSGAPNSRLGC
Trigger: GCAGCCCAACCGGGAGTTGGGGGCGCCAGAGCACCACCAGCTCCCTCGTGGGCTCCTCGCTGAGCGCCTTCG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp CCCGGAGGTCGGTCAGGCTCAGGTCCAGTTCTCCCCTaGGGAGATCCCGGGAGCCGCGTTCCCCGGGAGGTC +
Preference number: 6 (lower is better)
Translates to: PGGRSGSGPVLP*GDPGSRVPREV
Trigger: GACCTCCCGGGGAACGCGGCTCCCGGGATCTCCCCAGGGGAGAACTGGACCTGAGCCTGACCGACCTCCGGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS TCA 72 bp GGAGATGAAGCCAGGTCCGGCGGGGACCCTGCCTCCTaGGTCTCACCGCTGCCTCCGTCCAGCCCAGTGGGG +
Preference number: 6 (lower is better)
Translates to: GDEARSGGDPAS*VSPLPPSSPVG
Trigger: CCCCACTGGGCTGGACGGAGGCAGCGGTGAGACTCAGGAGGCAGGGTCCCCGCCGGACCTGGCTTCATCTCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 72 bp GCCGCGTTCCCCGGGAGGTCTATGCCAGCTGCAGCTTaGGCCCTCCGAGTCCCCGTCTCTGTCCCGATCCCC +
Preference number: 6 (lower is better)
Translates to: AAFPGRSMPAAA*ALRVPVSVPIP
Trigger: GGGGATCGGGACAGAGACGGGGACTCGGAGGGCGCAAGCTGCAGCTGGCATAGACCTCCCGGGGAACGCGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 72 bp GGGAGATCCCGGGAGCCGCGTTCCCCGGGAGGTCTATaGCAGCTGCAGCTTGCGCCCTCCGAGTCCCCGTCT +
Preference number: 6 (lower is better)
Translates to: GRSREPRSPGGL*QLQLAPSESPS
Trigger: AGACGGGGACTCGGAGGGCGCAAGCTGCAGCTGGCATAGACCTCCCGGGGAACGCGGCTCCCGGGATCTCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CAA 90 bp GCTGCAGCTTGCGCCCTCCGAGTCCCCGTCTCTGTCCCGATCCCCTaGCAAGGGCAACAGGGCGAAGGCGCTCAGCGAGGAGCCCACGAG +
Preference number: 6 (lower is better)
Translates to: AAACALRVPVSVPIP*QGQQGEGAQRGAHE
Trigger: CTCGTGGGCTCCTCGCTGAGCGCCTTCGCCCTGTTGCCCTTGCAAGGGGATCGGGACAGAGACGGGGACTCGGAGGGCGCAAGCTGCAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 72 bp GCGCCCTCCGAGTCCCCGTCTCTGTCCCGATCCCCTTaGAAGGGCAACAGGGCGAAGGCGCTCAGCGAGGAG +
Preference number: 6 (lower is better)
Translates to: APSESPSLSRSP*KGNRAKALSEE
Trigger: CTCCTCGCTGAGCGCCTTCGCCCTGTTGCCCTTGCAAGGGGATCGGGACAGAGACGGGGACTCGGAGGGCGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CAA 72 bp GGAGGCGGACTCCAGGGCCCGCCCACAGAACTGGAGTaGGCACCCCCTGGGGTCCCAGAGTGGCTCTTGGCT +
Preference number: 6 (lower is better)
Translates to: GGGLQGPPTELE*APPGVPEWLLA
Trigger: AGCCAAGAGCCACTCTGGGACCCCAGGGGGTGCCAACTCCAGTTCTGTGGGCGGGCCCTGGAGTCCGCCTCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CAA 72 bp AGCCGCGTTCCCCGGGAGGTCTATGCCAGCTGCAGCTaGCGCCCTCCGAGTCCCCGTCTCTGTCCCGATCCC +
Preference number: 6 (lower is better)
Translates to: SRVPREVYASCS*RPPSPRLCPDP
Trigger: GGGATCGGGACAGAGACGGGGACTCGGAGGGCGCAAGCTGCAGCTGGCATAGACCTCCCGGGGAACGCGGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS TCA 72 bp TGTCAGACTTGGGGGCTCCCGTGGACAGCGCGGAGATaGAGCCAGGTCCGGCGGGGACCCTGCCTCCTGAGT +
Preference number: 6 (lower is better)
Translates to: CQTWGLPWTARR*SQVRRGPCLLS
Trigger: ACTCAGGAGGCAGGGTCCCCGCCGGACCTGGCTTCATCTCCGCGCTGTCCACGGGAGCCCCCAAGTCTGACA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp TTGCAGGAGGCGGACTCCAGGGCCCGCCCACAGAACTaGAGTTGGCACCCCCTGGGGTCCCAGAGTGGCTCT +
Preference number: 6 (lower is better)
Translates to: LQEADSRARPQN*SWHPLGSQSGS
Trigger: AGAGCCACTCTGGGACCCCAGGGGGTGCCAACTCCAGTTCTGTGGGCGGGCCCTGGAGTCCGCCTCCTGCAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp CCTCCTGAGTCTCACCGCTGCCTCCGTCCAGCCCAGTaGGGTGGGGCCATGAACCCCTGGCCAGCATTGCAG +
Preference number: 6 (lower is better)
Translates to: PPESHRCLRPAQ*GGAMNPWPALQ
Trigger: CTGCAATGCTGGCCAGGGGTTCATGGCCCCACCCCACTGGGCTGGACGGAGGCAGCGGTGAGACTCAGGAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp CCGCGGCAACTGTGGTCCGGCGATGGCCAGCCCTACTaGAGCGCTCGCGGTAGATGCTGTACACGGCCTCTG +
Preference number: 6 (lower is better)
Translates to: PRQLWSGDGQPY*SARGRCCTRPL
Trigger: CAGAGGCCGTGTACAGCATCTACCGCGAGCGCTCCAGTAGGGCTGGCCATCGCCGGACCACAGTTGCCGCGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CAA 72 bp TGCGCCCTCCGAGTCCCCGTCTCTGTCCCGATCCCCTaGCAAGGGCAACAGGGCGAAGGCGCTCAGCGAGGA +
Preference number: 6 (lower is better)
Translates to: CALRVPVSVPIP*QGQQGEGAQRG
Trigger: TCCTCGCTGAGCGCCTTCGCCCTGTTGCCCTTGCAAGGGGATCGGGACAGAGACGGGGACTCGGAGGGCGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CAA 90 bp CGCAGAGCCCGCGCAGCTGCCTGGCTTCAGCTCCAGGCCTCGAGATaGCACGTAGCTGAGAAAGCCATTGAGCGGCGCTGCCCCGTGGGA +
Preference number: 6 (lower is better)
Translates to: RRARAAAWLQLQASR*HVAEKAIERRCPVG
Trigger: TCCCACGGGGCAGCGCCGCTCAATGGCTTTCTCAGCTACGTGCAATCTCGAGGCCTGGAGCTGAAGCCAGGCAGCTGCGCGGGCTCTGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 72 bp GGCGATGGCCAGCCCTACTGGAGCGCTCGCGGTAGATaGTGTACACGGCCTCTGTCAGACTTGGGGGCTCCC +
Preference number: 6 (lower is better)
Translates to: GDGQPYWSARGR*CTRPLSDLGAP
Trigger: GGGAGCCCCCAAGTCTGACAGAGGCCGTGTACAGCATCTACCGCGAGCGCTCCAGTAGGGCTGGCCATCGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp AGCCCCAAAGGCGTCCGCAGAGCCCGCGCAGCTGCCTaGCTTCAGCTCCAGGCCTCGAGATTGCACGTAGCT +
Preference number: 6 (lower is better)
Translates to: SPKGVRRARAAA*LQLQASRLHVA
Trigger: AGCTACGTGCAATCTCGAGGCCTGGAGCTGAAGCCAGGCAGCTGCGCGGGCTCTGCGGACGCCTTTGGGGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CAA 90 bp TACTGGAGCGCTCGCGGTAGATGCTGTACACGGCCTCTGTCAGACTaGGGGGCTCCCGTGGACAGCGCGGAGATGAAGCCAGGTCCGGCG +
Preference number: 6 (lower is better)
Translates to: YWSARGRCCTRPLSD*GAPVDSAEMKPGPA
Trigger: CGCCGGACCTGGCTTCATCTCCGCGCTGTCCACGGGAGCCCCCAAGTCTGACAGAGGCCGTGTACAGCATCTACCGCGAGCGCTCCAGTA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp CCTCTGCACAGACAGAGGCTCCGCCCTAGTTGGCCCTaGACTGGGACCCTCGGGGGAGCTGTGCTCAGTACT +
Preference number: 6 (lower is better)
Translates to: PLHRQRLRPSWP*TGTLGGAVLST
Trigger: AGTACTGAGCACAGCTCCCCCGAGGGTCCCAGTCCAGGGCCAACTAGGGCGGAGCCTCTGTCTGTGCAGAGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp AAACTGCCTCTGCACAGACAGAGGCTCCGCCCTAGTTaGCCCTGGACTGGGACCCTCGGGGGAGCTGTGCTC +
Preference number: 6 (lower is better)
Translates to: KLPLHRQRLRPS*PWTGTLGGAVL
Trigger: GAGCACAGCTCCCCCGAGGGTCCCAGTCCAGGGCCAACTAGGGCGGAGCCTCTGTCTGTGCAGAGGCAGTTT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp CCAGGGCCCGCCCACAGAACTGGAGTTGGCACCCCCTaGGGTCCCAGAGTGGCTCTTGGCTGGGTTTTTGTT +
Preference number: 6 (lower is better)
Translates to: PGPAHRTGVGTP*GPRVALGWVFV
Trigger: AACAAAAACCCAGCCAAGAGCCACTCTGGGACCCCAGGGGGTGCCAACTCCAGTTCTGTGGGCGGGCCCTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CAA 72 bp GCTCGCGGTAGATGCTGTACACGGCCTCTGTCAGACTaGGGGGCTCCCGTGGACAGCGCGGAGATGAAGCCA +
Preference number: 6 (lower is better)
Translates to: ARGRCCTRPLSD*GAPVDSAEMKP
Trigger: TGGCTTCATCTCCGCGCTGTCCACGGGAGCCCCCAAGTCTGACAGAGGCCGTGTACAGCATCTACCGCGAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 72 bp AGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGTGGCTaGAGATCTTGCAGGAGGCGGACTCCAGGGCCCGCC +
Preference number: 6 (lower is better)
Translates to: RGRGRGRGRGGG*RSCRRRTPGPA
Trigger: GGCGGGCCCTGGAGTCCGCCTCCTGCAAGATCTGCAGCCACCTCCTCTTCCTCTTCCTCTTCCTCTTCCTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CAA 72 bp ACTGCTTGCTCCCACCTCTGTTGGCGGCGTTGGCTTTaGGCCAGTAGCCCACCACGGCCATGGCTATGCCCA +
Preference number: 6 (lower is better)
Translates to: TACSHLCWRRWL*ASSPPRPWLCP
Trigger: TGGGCATAGCCATGGCCGTGGTGGGCTACTGGCCAAAAGCCAACGCCGCCAACAGAGGTGGGAGCAAGCAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp GCAGTAACTGCTTGCTCCCACCTCTGTTGGCGGCGTTaGCTTTTGGCCAGTAGCCCACCACGGCCATGGCTA +
Preference number: 6 (lower is better)
Translates to: AVTACSHLCWRR*LLASSPPRPWL
Trigger: TAGCCATGGCCGTGGTGGGCTACTGGCCAAAAGCCAACGCCGCCAACAGAGGTGGGAGCAAGCAGTTACTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 72 bp CAATGCGATGGCTACTGCCCACAGGCAGTAACTGCTTaGTCCCACCTCTGTTGGCGGCGTTGGCTTTTGGCC +
Preference number: 6 (lower is better)
Translates to: QCDGYCPQAVTA*SHLCWRRWLLA
Trigger: GGCCAAAAGCCAACGCCGCCAACAGAGGTGGGAGCAAGCAGTTACTGCCTGTGGGCAGTAGCCATCGCATTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CAA 72 bp CCAATGCGATGGCTACTGCCCACAGGCAGTAACTGCTaGCTCCCACCTCTGTTGGCGGCGTTGGCTTTTGGC +
Preference number: 6 (lower is better)
Translates to: PMRWLLPTGSNC*LPPLLAALAFG
Trigger: GCCAAAAGCCAACGCCGCCAACAGAGGTGGGAGCAAGCAGTTACTGCCTGTGGGCAGTAGCCATCGCATTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 72 bp CTAGTTGGCCCTGGACTGGGACCCTCGGGGGAGCTGTaGTCAGTACTGGGATCTGTAACATCCTCACAGTCT +
Preference number: 6 (lower is better)
Translates to: LVGPGLGPSGEL*SVLGSVTSSQS
Trigger: AGACTGTGAGGATGTTACAGATCCCAGTACTGAGCACAGCTCCCCCGAGGGTCCCAGTCCAGGGCCAACTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CAA 90 bp GTCCCAGAGTGGCTCTTGGCTGGGTTTTTGTTGCCATTGCTGCTGTaGCTGATGGCCCCAATGCGATGGCTACTGCCCACAGGCAGTAAC +
Preference number: 6 (lower is better)
Translates to: VPEWLLAGFLLPLLL*LMAPMRWLLPTGSN
Trigger: GTTACTGCCTGTGGGCAGTAGCCATCGCATTGGGGCCATCAGCAACAGCAGCAATGGCAACAAAAACCCAGCCAAGAGCCACTCTGGGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CCA 72 bp TTGCCATTGCTGCTGTTGCTGATGGCCCCAATGCGATaGCTACTGCCCACAGGCAGTAACTGCTTGCTCCCA +
Preference number: 6 (lower is better)
Translates to: LPLLLLLMAPMR*LLPTGSNCLLP
Trigger: TGGGAGCAAGCAGTTACTGCCTGTGGGCAGTAGCCATCGCATTGGGGCCATCAGCAACAGCAGCAATGGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CAA 72 bp CCTTTCACCACCACCACGTCGTTTTTACGCCTCTTCTaGGCTTTCCTCTTGCGCTTAGGGACCTGGCTGGGG +
Preference number: 6 (lower is better)
Translates to: PFTTTTSFLRLF*AFLLRLGTWLG
Trigger: CCCCAGCCAGGTCCCTAAGCGCAAGAGGAAAGCCAAGAAGAGGCGTAAAAACGACGTGGTGGTGGTGAAAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000178545.3
ENSMUST00000233019.2
CDS TCA 72 bp TCTTGGCTGGGTTTTTGTTGCCATTGCTGCTGTTGCTaGTGGCCCCAATGCGATGGCTACTGCCCACAGGCA +
Preference number: 6 (lower is better)
Translates to: SWLGFCCHCCCC*WPQCDGYCPQA
Trigger: TGCCTGTGGGCAGTAGCCATCGCATTGGGGCCATCAGCAACAGCAGCAATGGCAACAAAAACCCAGCCAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CAA 72 bp TGGCTCTTGGCTGGGTTTTTGTTGCCATTGCTGCTGTaGCTGATGGCCCCAATGCGATGGCTACTGCCCACA +
Preference number: 6 (lower is better)
Translates to: WLLAGFLLPLLL*LMAPMRWLLPT
Trigger: TGTGGGCAGTAGCCATCGCATTGGGGCCATCAGCAACAGCAGCAATGGCAACAAAAACCCAGCCAAGAGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CAA 72 bp GTCCCAGAGTGGCTCTTGGCTGGGTTTTTGTTGCCATaGCTGCTGTTGCTGATGGCCCCAATGCGATGGCTA +
Preference number: 6 (lower is better)
Translates to: VPEWLLAGFLLP*LLLLMAPMRWL
Trigger: TAGCCATCGCATTGGGGCCATCAGCAACAGCAGCAATGGCAACAAAAACCCAGCCAAGAGCCACTCTGGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS TCA 72 bp TGCCCACCAATAGCACTAGGATCCCACAAAGGGCAATaGGCCCCGAGATGGAGCACAGCTTCAGTTTGCCTT +
Preference number: 6 (lower is better)
Translates to: CPPIALGSHKGQ*APRWSTASVCL
Trigger: AAGGCAAACTGAAGCTGTGCTCCATCTCGGGGCTCATTGCCCTTTGTGGGATCCTAGTGCTATTGGTGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CAA 90 bp ATCCCACAAAGGGCAATGAGCCCCGAGATGGAGCACAGCTTCAGTTaGCCTTTCACCACCACCACGTCGTTTTTACGCCTCTTCTTGGCT +
Preference number: 6 (lower is better)
Translates to: IPQRAMSPEMEHSFS*PFTTTTSFLRLFLA
Trigger: AGCCAAGAAGAGGCGTAAAAACGACGTGGTGGTGGTGAAAGGCAAACTGAAGCTGTGCTCCATCTCGGGGCTCATTGCCCTTTGTGGGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS CAA 90 bp TGCTCAGTACTGGGATCTGTAACATCCTCACAGTCTAGCCTTTTCTaGGCCACCACATCCACGACCGACTCTACAGAGGTGTCAGCCTCC +
Preference number: 6 (lower is better)
Translates to: CSVLGSVTSSQSSLF*ATTSTTDSTEVSAS
Trigger: GGAGGCTGACACCTCTGTAGAGTCGGTCGTGGATGTGGTGGCCAAGAAAAGGCTAGACTGTGAGGATGTTACAGATCCCAGTACTGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3
CDS GCA 72 bp ATGAGGAAGAGTTTCTCCTTGTTTGTAAACTGCCTCTaGACAGACAGAGGCTCCGCCCTAGTTGGCCCTGGA +
Preference number: 6 (lower is better)
Translates to: MRKSFSLFVNCL*TDRGSALVGPG
Trigger: TCCAGGGCCAACTAGGGCGGAGCCTCTGTCTGTGCAGAGGCAGTTTACAAACAAGGAGAAACTCTTCCTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178545.3