RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMEM200B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070720

Ensembl transcript IDs: ENSMUST00000094666.4, ENSMUST00000238733.2

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAGCTGGCACTGCTACACATGCAGGTCAGCAGCCTTGGCGGCTGCTaGCACCACAATATCCATCCTAGCCTCGGAGGTGACTGGAGCAGC +
Preference number: 1 (lower is better)
Translates to: QLALLHMQVSSLGGC*HHNIHPSLGGDWSS
Trigger: GCTGCTCCAGTCACCTCCGAGGCTAGGATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGCCAGCTG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR GCA 90 bp GTGCAGCTGGCACTGCTACACATGCAGGTCAGCAGCCTTGGCGGCTaGTGCCACCACAATATCCATCCTAGCCTCGGAGGTGACTGGAGC +
Preference number: 1 (lower is better)
Translates to: VQLALLHMQVSSLGG*CHHNIHPSLGGDWS
Trigger: GCTCCAGTCACCTCCGAGGCTAGGATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGCCAGCTGCAC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR GCA 90 bp CACATGCCCCTGGAGCTCGTTCGGTGCAGCTGGCACTGCTACACATaGAGGTCAGCAGCCTTGGCGGCTGCTGCCACCACAATATCCATC +
Preference number: 1 (lower is better)
Translates to: HMPLELVRCSWHCYT*RSAALAAAATTISI
Trigger: GATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGCCAGCTGCACCGAACGAGCTCCAGGGGCATGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR GCA 90 bp CGGAGCCTGTCCCAGCCTGGGACATCCCAACCTACCACTGTTGTTTaGCAAGGAACCCTGTGCATCTCACGGTGCTCTTGGCCTACCCTG +
Preference number: 1 (lower is better)
Translates to: RSLSQPGTSQPTTVV*QGTLCISRCSWPTL
Trigger: CAGGGTAGGCCAAGAGCACCGTGAGATGCACAGGGTTCCTTGGCAAACAACAGTGGTAGGTTGGGATGTCCCAGGCTGGGACAGGCTCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR GCA 90 bp CCTGGGACATCCCAACCTACCACTGTTGTTTGCCAAGGAACCCTGTaGATCTCACGGTGCTCTTGGCCTACCCTGCAGCCCTTCAGGTGC +
Preference number: 1 (lower is better)
Translates to: PGTSQPTTVVCQGTL*ISRCSWPTLQPFRC
Trigger: GCACCTGAAGGGCTGCAGGGTAGGCCAAGAGCACCGTGAGATGCACAGGGTTCCTTGGCAAACAACAGTGGTAGGTTGGGATGTCCCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CCA 90 bp CCTACCCTGCAGCCCTTCAGGTGCCGGTCCTGGGCTAAGGCCACATaGGCTGAAGAAATTCCTGAGGCTGAATCATGCTGGTGTCCACAT +
Preference number: 1 (lower is better)
Translates to: PTLQPFRCRSWAKAT*AEEIPEAESCWCPH
Trigger: ATGTGGACACCAGCATGATTCAGCCTCAGGAATTTCTTCAGCCCATGTGGCCTTAGCCCAGGACCGGCACCTGAAGGGCTGCAGGGTAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CCA 90 bp TTCCTGAGGCTGAATCATGCTGGTGTCCACATTAACACATGCCCCTaGAGCTCGTTCGGTGCAGCTGGCACTGCTACACATGCAGGTCAG +
Preference number: 1 (lower is better)
Translates to: FLRLNHAGVHINTCP*SSFGAAGTATHAGQ
Trigger: CTGACCTGCATGTGTAGCAGTGCCAGCTGCACCGAACGAGCTCCAGGGGCATGTGTTAATGTGGACACCAGCATGATTCAGCCTCAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR-3UTR GCA 90 bp CGGTGCTCTTGGCCTACCCTGCAGCCCTTCAGGTGCCGGTCCTGGGCTAAGGCCGTCCACATTAACACATaGCCCTGGAGCTCGTTCGGT +
Preference number: 2 (lower is better)
Translates to: RCSWPTLQPFRCRSWAKAVHINT*PWSSFG
Trigger: ACCGAACGAGCTCCAGGGGCATGTGTTAATGTGGAC...GGCCTTAGCCCAGGACCGGCACCTGAAGGGCTGCAGGGTAGGCCAAGAGCACCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR-3UTR GCA 90 bp GCCTGTCCCAGCCTGGGACATCCCAACCTACCACTGTTGTTTGCCAAGGAACCCCTGCAGCCCTTCAGGTaGCGGTCCTGGGCTAAGGCC +
Preference number: 2 (lower is better)
Translates to: ACPSLGHPNLPLLFAKEPLQPFR*RSWAKA
Trigger: GGCCTTAGCCCAGGACCGGCACCTGAAGGGCTGCAG...GGGTTCCTTGGCAAACAACAGTGGTAGGTTGGGATGTCCCAGGCTGGGACAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CAA 90 bp CTCGTTCGGTGCAGCTGGCACTGCTACACATGCAGGTCAGCAGCCTaGGCGGCTGCTGCCACCACAATATCCATCCTAGCCTCGGAGGTG +
Preference number: 2 (lower is better)
Translates to: LVRCSWHCYTCRSAA*AAAATTISILASEV
Trigger: CACCTCCGAGGCTAGGATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGCCAGCTGCACCGAACGAG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR-3UTR CCA 90 bp TTTGCCAAGGAACCCTGTGCATCTCACGGTGCTCTTGGCCTACCCTGCAGCCCTGCAGGTCAGCAGCCTTaGCGGCTGCTGCCACCACAA +
Preference number: 2 (lower is better)
Translates to: FAKEPCASHGALGLPCSPAGQQP*RLLPPQ
Trigger: TTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGC...AGGGCTGCAGGGTAGGCCAAGAGCACCGTGAGATGCACAGGGTTCCTTGGCAAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR-3UTR CCA 90 bp GCACTGCTACACATGCAGGTCAGCAGCCTTGGCGGCTGCTGCCACCACAATATCGGTGTCCCAGTCCCATaGTCCACACTGGTAGCCTCA +
Preference number: 2 (lower is better)
Translates to: ALLHMQVSSLGGCCHHNIGVPVP*STLVAS
Trigger: TGAGGCTACCAGTGTGGACCATGGGACTGGGACACC...GATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CAA 90 bp TTAGACGGAGCCTGTCCCAGCCTGGGACATCCCAACCTACCACTGTaGTTTGCCAAGGAACCCTGTGCATCTCACGGTGCTCTTGGCCTA +
Preference number: 2 (lower is better)
Translates to: LDGACPSLGHPNLPL*FAKEPCASHGALGL
Trigger: TAGGCCAAGAGCACCGTGAGATGCACAGGGTTCCTTGGCAAACAACAGTGGTAGGTTGGGATGTCCCAGGCTGGGACAGGCTCCGTCTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CAA 90 bp CACTTGACTGAAGGAAGAACAGACCTGAGGTGGTGGCAGTTAGAGTaGCGGTCACTGCCCCAGACAGCTGCAGAGGGTCTCATTCCACCT +
Preference number: 2 (lower is better)
Translates to: HLTEGRTDLRWWQLE*RSLPQTAAEGLIPP
Trigger: AGGTGGAATGAGACCCTCTGCAGCTGTCTGGGGCAGTGACCGCAACTCTAACTGCCACCACCTCAGGTCTGTTCTTCCTTCAGTCAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR-3UTR CCA 90 bp AGACGGAGCCTGTCCCAGCCTGGGACATCCCAACCTACCACTGTTGTTTGCCAAGACTGGAGCAGCTATTaGGCACTGGACTTCTGGTGT +
Preference number: 2 (lower is better)
Translates to: RRSLSQPGTSQPTTVVCQDWSSY*ALDFWC
Trigger: ACACCAGAAGTCCAGTGCCCAATAGCTGCTCCAGTC...TTGGCAAACAACAGTGGTAGGTTGGGATGTCCCAGGCTGGGACAGGCTCCGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR-3UTR CCA 90 bp CAGGACTACCAACTTAGACGGAGCCTGTCCCAGCCTGGGACATCCCAACCTACCTGGGCTAAGGCCACATaGGCTGAAGAAATTCCTGAG +
Preference number: 2 (lower is better)
Translates to: QDYQLRRSLSQPGTSQPTWAKAT*AEEIPE
Trigger: CTCAGGAATTTCTTCAGCCCATGTGGCCTTAGCCCA...GGTAGGTTGGGATGTCCCAGGCTGGGACAGGCTCCGTCTAAGTTGGTAGTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR-3UTR CCA 90 bp CAGAGCCACTTGACTGAAGGAAGAACAGACCTGAGGTGGTGGCAGTTAGAGTTGATCTCACGGTGCTCTTaGCCTACCCTGCAGCCCTTC +
Preference number: 2 (lower is better)
Translates to: QSHLTEGRTDLRWWQLELISRCS*PTLQPF
Trigger: GAAGGGCTGCAGGGTAGGCCAAGAGCACCGTGAGAT...CAACTCTAACTGCCACCACCTCAGGTCTGTTCTTCCTTCAGTCAAGTGGCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR GCA 72 bp CTGGAGCTCGTTCGGTGCAGCTGGCACTGCTACACATaGAGGTCAGCAGCCTTGGCGGCTGCTGCCACCACA +
Preference number: 3 (lower is better)
Translates to: LELVRCSWHCYT*RSAALAAAATT
Trigger: TGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGCCAGCTGCACCGAACGAGCTCCAG
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR GCA 72 bp TCACGGTGCTCTTGGCCTACCCTGCAGCCCTTCAGGTaGCGGTCCTGGGCTAAGGCCACATGGGCTGAAGAA +
Preference number: 3 (lower is better)
Translates to: SRCSWPTLQPFR*RSWAKATWAEE
Trigger: TTCTTCAGCCCATGTGGCCTTAGCCCAGGACCGGCACCTGAAGGGCTGCAGGGTAGGCCAAGAGCACCGTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR GCA 72 bp CTGCTACACATGCAGGTCAGCAGCCTTGGCGGCTGCTaGCACCACAATATCCATCCTAGCCTCGGAGGTGAC +
Preference number: 3 (lower is better)
Translates to: LLHMQVSSLGGC*HHNIHPSLGGD
Trigger: GTCACCTCCGAGGCTAGGATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR GCA 72 bp GCACTGCTACACATGCAGGTCAGCAGCCTTGGCGGCTaGTGCCACCACAATATCCATCCTAGCCTCGGAGGT +
Preference number: 3 (lower is better)
Translates to: ALLHMQVSSLGG*CHHNIHPSLGG
Trigger: ACCTCCGAGGCTAGGATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CCA 72 bp GGAGGTGACTGGAGCAGCTATTGGGCACTGGACTTCTaGTGTCCCAGTCCCATGGTCCACACTGGTAGCCTC +
Preference number: 3 (lower is better)
Translates to: GGDWSSYWALDF*CPSPMVHTGSL
Trigger: GAGGCTACCAGTGTGGACCATGGGACTGGGACACCAGAAGTCCAGTGCCCAATAGCTGCTCCAGTCACCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CCA 72 bp CTAGCCTCGGAGGTGACTGGAGCAGCTATTGGGCACTaGACTTCTGGTGTCCCAGTCCCATGGTCCACACTG +
Preference number: 3 (lower is better)
Translates to: LASEVTGAAIGH*TSGVPVPWSTL
Trigger: CAGTGTGGACCATGGGACTGGGACACCAGAAGTCCAGTGCCCAATAGCTGCTCCAGTCACCTCCGAGGCTAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CCA 72 bp TCTTGGCCTACCCTGCAGCCCTTCAGGTGCCGGTCCTaGGCTAAGGCCACATGGGCTGAAGAAATTCCTGAG +
Preference number: 3 (lower is better)
Translates to: SWPTLQPFRCRS*AKATWAEEIPE
Trigger: CTCAGGAATTTCTTCAGCCCATGTGGCCTTAGCCCAGGACCGGCACCTGAAGGGCTGCAGGGTAGGCCAAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR GCA 72 bp TCCCAACCTACCACTGTTGTTTGCCAAGGAACCCTGTaGATCTCACGGTGCTCTTGGCCTACCCTGCAGCCC +
Preference number: 3 (lower is better)
Translates to: SQPTTVVCQGTL*ISRCSWPTLQP
Trigger: GGGCTGCAGGGTAGGCCAAGAGCACCGTGAGATGCACAGGGTTCCTTGGCAAACAACAGTGGTAGGTTGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CCA 72 bp ATCCATCCTAGCCTCGGAGGTGACTGGAGCAGCTATTaGGCACTGGACTTCTGGTGTCCCAGTCCCATGGTC +
Preference number: 3 (lower is better)
Translates to: IHPSLGGDWSSY*ALDFWCPSPMV
Trigger: GACCATGGGACTGGGACACCAGAAGTCCAGTGCCCAATAGCTGCTCCAGTCACCTCCGAGGCTAGGATGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CCA 72 bp CAGCCCTTCAGGTGCCGGTCCTGGGCTAAGGCCACATaGGCTGAAGAAATTCCTGAGGCTGAATCATGCTGG +
Preference number: 3 (lower is better)
Translates to: QPFRCRSWAKAT*AEEIPEAESCW
Trigger: CCAGCATGATTCAGCCTCAGGAATTTCTTCAGCCCATGTGGCCTTAGCCCAGGACCGGCACCTGAAGGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR GCA 72 bp TCCCAGCCTGGGACATCCCAACCTACCACTGTTGTTTaGCAAGGAACCCTGTGCATCTCACGGTGCTCTTGG +
Preference number: 3 (lower is better)
Translates to: SQPGTSQPTTVV*QGTLCISRCSW
Trigger: CCAAGAGCACCGTGAGATGCACAGGGTTCCTTGGCAAACAACAGTGGTAGGTTGGGATGTCCCAGGCTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CCA 72 bp TGCCACCACAATATCCATCCTAGCCTCGGAGGTGACTaGAGCAGCTATTGGGCACTGGACTTCTGGTGTCCC +
Preference number: 3 (lower is better)
Translates to: CHHNIHPSLGGD*SSYWALDFWCP
Trigger: GGGACACCAGAAGTCCAGTGCCCAATAGCTGCTCCAGTCACCTCCGAGGCTAGGATGGATATTGTGGTGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CCA 72 bp GCTATTGGGCACTGGACTTCTGGTGTCCCAGTCCCATaGTCCACACTGGTAGCCTCACAGCAGGTTATACCT +
Preference number: 3 (lower is better)
Translates to: AIGHWTSGVPVP*STLVASQQVIP
Trigger: AGGTATAACCTGCTGTGAGGCTACCAGTGTGGACCATGGGACTGGGACACCAGAAGTCCAGTGCCCAATAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CCA 72 bp AGCCACTTGACTGAAGGAAGAACAGACCTGAGGTGGTaGCAGTTAGAGTTGCGGTCACTGCCCCAGACAGCT +
Preference number: 3 (lower is better)
Translates to: SHLTEGRTDLRW*QLELRSLPQTA
Trigger: AGCTGTCTGGGGCAGTGACCGCAACTCTAACTGCCACCACCTCAGGTCTGTTCTTCCTTCAGTCAAGTGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CCA 72 bp CAGAGCCACTTGACTGAAGGAAGAACAGACCTGAGGTaGTGGCAGTTAGAGTTGCGGTCACTGCCCCAGACA +
Preference number: 3 (lower is better)
Translates to: QSHLTEGRTDLR*WQLELRSLPQT
Trigger: TGTCTGGGGCAGTGACCGCAACTCTAACTGCCACCACCTCAGGTCTGTTCTTCCTTCAGTCAAGTGGCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
CDS-3UTR CCA 90 bp CACATGCCCCTGGAGCTCGTTCGGTGCAGCTGGCACTGCTACACATGCAGGTCACCGAGGACCCCAGGGTaGTGGCAGCCCCGGGCCCTT +
Preference number: 4 (lower is better)
Translates to: HMPLELVRCSWHCYTCRSPRTPG*WQPRAL
Trigger: AAGGGCCCGGGGCTGCCACCACCCTGGGGTCCTCGG...TGACCTGCATGTGTAGCAGTGCCAGCTGCACCGAACGAGCTCCAGGGGCATGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
CDS-3UTR GCA 90 bp CTGGACTTCTGGTGTCCCAGTCCCATGGTCCACACTGGTAGCCTCACAGCAGGTCCACGGCGATGCCCATaGCCACCAGCACCACGAGCG +
Preference number: 4 (lower is better)
Translates to: LDFWCPSPMVHTGSLTAGPRRCP*PPAPRA
Trigger: CGCTCGTGGTGCTGGTGGGCATGGGCATCGCCGTGG...ACCTGCTGTGAGGCTACCAGTGTGGACCATGGGACTGGGACACCAGAAGTCCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
CDS-3UTR CCA 90 bp GGAGGTGACTGGAGCAGCTATTGGGCACTGGACTTCTGGTGTCCCAGTCCCATGAGGACCCCAGGGTGGTaGCAGCCCCGGGCCCTTCAA +
Preference number: 4 (lower is better)
Translates to: GGDWSSYWALDFWCPSPMRTPGW*QPRALQ
Trigger: TTGAAGGGCCCGGGGCTGCCACCACCCTGGGGTCCT...CATGGGACTGGGACACCAGAAGTCCAGTGCCCAATAGCTGCTCCAGTCACCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
CDS-3UTR CCA 90 bp GTTTGCCAAGGAACCCTGTGCATCTCACGGTGCTCTTGGCCTACCCTGCAGCCCGAGTCGGTCCAGCCGTaGCCAGCTTCGGTGGGCACA +
Preference number: 4 (lower is better)
Translates to: VCQGTLCISRCSWPTLQPESVQP*PASVGT
Trigger: TGTGCCCACCGAAGCTGGCCACGGCTGGACCGACTC...GGGCTGCAGGGTAGGCCAAGAGCACCGTGAGATGCACAGGGTTCCTTGGCAAAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
CDS-3UTR TCA 90 bp AGACCTGAGGTGGTGGCAGTTAGAGTTGCGGTCACTGCCCCAGACAGCTGCAGAACAGGCCGACGCCCATaGTTACCGGTCCCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: RPEVVAVRVAVTAPDSCRTGRRP*LPVPAA
Trigger: GGCTGCTGGGACCGGTAATCATGGGCGTCGGCCTGT...TCTGCAGCTGTCTGGGGCAGTGACCGCAACTCTAACTGCCACCACCTCAGGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
CDS-3UTR GCA 90 bp CTGCCCCAGACAGCTGCAGAGGGTCTCATTCCACCTCATCGCCCACCTTCCCCCCAGGAACCAGAGGGCTaGACCGTGATGATCACGTGT +
Preference number: 4 (lower is better)
Translates to: LPQTAAEGLIPPHRPPSPQEPEG*TVMITC
Trigger: ACACGTGATCATCACGGTGCAGCCCTCTGGTTCCTG...GGGGGAAGGTGGGCGATGAGGTGGAATGAGACCCTCTGCAGCTGTCTGGGGCAG
61% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CAA 72 bp TGCAGCTGGCACTGCTACACATGCAGGTCAGCAGCCTaGGCGGCTGCTGCCACCACAATATCCATCCTAGCC +
Preference number: 4 (lower is better)
Translates to: CSWHCYTCRSAA*AAAATTISILA
Trigger: GGCTAGGATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGCCAGCTGCA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
CDS-3UTR CCA 90 bp CATTTCCACCAGGACTACCAACTTAGACGGAGCCTGTCCCAGCCTGGGACATCCACAGTCCCGAGTTGCTaGCGCCCCCAGAAGAAGCTC +
Preference number: 4 (lower is better)
Translates to: HFHQDYQLRRSLSQPGTSTVPSC*RPQKKL
Trigger: GAGCTTCTTCTGGGGGCGCCAGCAACTCGGGACTGT...GGATGTCCCAGGCTGGGACAGGCTCCGTCTAAGTTGGTAGTCCTGGTGGAAATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
CDS-3UTR CCA 90 bp TACACATGCAGGTCAGCAGCCTTGGCGGCTGCTGCCACCACAATATCCATCCTACGTGGCCAGCTTCGGTaGGCACAGTCCCGAGTTGCT +
Preference number: 4 (lower is better)
Translates to: YTCRSAALAAAATTISILRGQLR*AQSRVA
Trigger: AGCAACTCGGGACTGTGCCCACCGAAGCTGGCCACG...TAGGATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
CDS-3UTR TCA 90 bp CTGGACTTCTGGTGTCCCAGTCCCATGGTCCACACTGGTAGCCTCACAGCAGGTATGTGTTGGCACAGATaGACACGAACAGGCCGACGC +
Preference number: 4 (lower is better)
Translates to: LDFWCPSPMVHTGSLTAGMCWHR*TRTGRR
Trigger: GCGTCGGCCTGTTCGTGTTCATCTGTGCCAACACAT...ACCTGCTGTGAGGCTACCAGTGTGGACCATGGGACTGGGACACCAGAAGTCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
CDS-3UTR TCA 90 bp TACACATGCAGGTCAGCAGCCTTGGCGGCTGCTGCCACCACAATATCCATCCTAATCACGTGTCCAGTCTaGGTCCGAGGACCCCAGGGT +
Preference number: 4 (lower is better)
Translates to: YTCRSAALAAAATTISILITCPV*VRGPQG
Trigger: ACCCTGGGGTCCTCGGACTCAGACTGGACACGTGAT...TAGGATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
CDS-3UTR CCA 90 bp CACTGCTACACATGCAGGTCAGCAGCCTTGGCGGCTGCTGCCACCACAATATCCCCAGGTCCAGAGACTTaGAGTGCTCGATGCAGGAAC +
Preference number: 4 (lower is better)
Translates to: HCYTCRSAALAAAATTISPGPET*SARCRN
Trigger: GTTCCTGCATCGAGCACTCCAAGTCTCTGGACCTGG...GGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CAA 72 bp GCCTGTCCCAGCCTGGGACATCCCAACCTACCACTGTaGTTTGCCAAGGAACCCTGTGCATCTCACGGTGCT +
Preference number: 4 (lower is better)
Translates to: ACPSLGHPNLPL*FAKEPCASHGA
Trigger: AGCACCGTGAGATGCACAGGGTTCCTTGGCAAACAACAGTGGTAGGTTGGGATGTCCCAGGCTGGGACAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CAA 72 bp GAAGGAAGAACAGACCTGAGGTGGTGGCAGTTAGAGTaGCGGTCACTGCCCCAGACAGCTGCAGAGGGTCTC +
Preference number: 4 (lower is better)
Translates to: EGRTDLRWWQLE*RSLPQTAAEGL
Trigger: GAGACCCTCTGCAGCTGTCTGGGGCAGTGACCGCAACTCTAACTGCCACCACCTCAGGTCTGTTCTTCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
CDS-3UTR GCA 90 bp CACTGCTACACATGCAGGTCAGCAGCCTTGGCGGCTGCTGCCACCACAATATCCTCCAGAGACTTGGAGTaGTCGATGCAGGAACCAGAG +
Preference number: 4 (lower is better)
Translates to: HCYTCRSAALAAAATTISSRDLE*SMQEPE
Trigger: CTCTGGTTCCTGCATCGAGCACTCCAAGTCTCTGGA...GGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
3UTR CAA 72 bp GTCCCAGCCTGGGACATCCCAACCTACCACTGTTGTTaGCCAAGGAACCCTGTGCATCTCACGGTGCTCTTG +
Preference number: 4 (lower is better)
Translates to: VPAWDIPTYHCC*PRNPVHLTVLL
Trigger: CAAGAGCACCGTGAGATGCACAGGGTTCCTTGGCAAACAACAGTGGTAGGTTGGGATGTCCCAGGCTGGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
CDS TCA 90 bp GGCAGCAGCGCGTCCCAGCCTGGGCCGTCGGGCGGCCGCAGCGCCTaGGCCCTCAGCATGCCCCGGCGGAGACGCCGGGTCTCCAGGTCG +
Preference number: 5 (lower is better)
Translates to: GSSASQPGPSGGRSA*ALSMPRRRRRVSRS
Trigger: CGACCTGGAGACCCGGCGTCTCCGCCGGGGCATGCTGAGGGCTCAGGCGCTGCGGCCGCCCGACGGCCCAGGCTGGGACGCGCTGCTGCC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS CCA 90 bp AAGTTTCGGGTTCCGCGACGGCGCCCGGGGACCCATGCGCGGGACTaGGCAGCAGCGCGTCCCAGCCTGGGCCGTCGGGCGGCCGCAGCG +
Preference number: 5 (lower is better)
Translates to: KFRVPRRRPGTHARD*AAARPSLGRRAAAA
Trigger: CGCTGCGGCCGCCCGACGGCCCAGGCTGGGACGCGCTGCTGCCCAGTCCCGCGCATGGGTCCCCGGGCGCCGTCGCGGAACCCGAAACTT
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS GCA 90 bp AGGCCGACGCCCATGATTACCGGTCCCAGCAGCCGCAGGCGCTCGTaGGGCCCGTGCGCGCGGCCGGTCCTCGGGGCGTGGGTGTGGGAG +
Preference number: 5 (lower is better)
Translates to: RPTPMITGPSSRRRS*GPCARPVLGAWVWE
Trigger: CTCCCACACCCACGCCCCGAGGACCGGCCGCGCGCACGGGCCGCACGAGCGCCTGCGGCTGCTGGGACCGGTAATCATGGGCGTCGGCCT
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS GCA 90 bp GCCAGGTCCCAAGTTTCGGGTTCCGCGACGGCGCCCGGGGACCCATaGGCGGGACTGGGCAGCAGCGCGTCCCAGCCTGGGCCGTCGGGC +
Preference number: 5 (lower is better)
Translates to: ARSQVSGSATAPGDP*AGLGSSASQPGPSG
Trigger: GCCCGACGGCCCAGGCTGGGACGCGCTGCTGCCCAGTCCCGCGCATGGGTCCCCGGGCGCCGTCGCGGAACCCGAAACTTGGGACCTGGC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS CCA 90 bp TCAACGGGTAGCTGTGGAGCAGGGCAGGCAGCCCCGATCGAGGGTTaGCAGGTTCAGAGCGCAGGCTGCGCACCGACGGGACGGGCGAGG +
Preference number: 5 (lower is better)
Translates to: STGSCGAGQAAPIEG*QVQSAGCAPTGRAR
Trigger: CCTCGCCCGTCCCGTCGGTGCGCAGCCTGCGCTCTGAACCTGCCAACCCTCGATCGGGGCTGCCTGCCCTGCTCCACAGCTACCCGTTGA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS CCA 90 bp CGTGATGATCACGTGTCCAGTCTGAGTCCGAGGACCCCAGGGTGGTaGCAGCCCCGGGCCCTTCAACGGGTAGCTGTGGAGCAGGGCAGG +
Preference number: 5 (lower is better)
Translates to: RDDHVSSLSPRTPGW*QPRALQRVAVEQGR
Trigger: CCTGCCCTGCTCCACAGCTACCCGTTGAAGGGCCCGGGGCTGCCACCACCCTGGGGTCCTCGGACTCAGACTGGACACGTGATCATCACG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS CCA 90 bp CACCGTGATGATCACGTGTCCAGTCTGAGTCCGAGGACCCCAGGGTaGTGGCAGCCCCGGGCCCTTCAACGGGTAGCTGTGGAGCAGGGC +
Preference number: 5 (lower is better)
Translates to: HRDDHVSSLSPRTPG*WQPRALQRVAVEQG
Trigger: GCCCTGCTCCACAGCTACCCGTTGAAGGGCCCGGGGCTGCCACCACCCTGGGGTCCTCGGACTCAGACTGGACACGTGATCATCACGGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS TCA 90 bp ATGCAGGAACCAGAGGGCTGCACCGTGATGATCACGTGTCCAGTCTaGGTCCGAGGACCCCAGGGTGGTGGCAGCCCCGGGCCCTTCAAC +
Preference number: 5 (lower is better)
Translates to: MQEPEGCTVMITCPV*VRGPQGGGSPGPFN
Trigger: GTTGAAGGGCCCGGGGCTGCCACCACCCTGGGGTCCTCGGACTCAGACTGGACACGTGATCATCACGGTGCAGCCCTCTGGTTCCTGCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS-3UTR CAA 90 bp GGAGGTGACTGGAGCAGCTATTGGGCACTGGACTTCTGGTGTCCCAGTCCCATGAGCCCCGATCGAGGGTaGGCAGGTTCAGAGCGCAGG +
Preference number: 5 (lower is better)
Translates to: GGDWSSYWALDFWCPSPMSPDRG*AGSERR
Trigger: CCTGCGCTCTGAACCTGCCAACCCTCGATCGGGGCT...CATGGGACTGGGACACCAGAAGTCCAGTGCCCAATAGCTGCTCCAGTCACCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
CDS-3UTR CAA 90 bp CTGGAGCAGCTATTGGGCACTGGACTTCTGGTGTCCCAGTCCCATGGTCCACACGGGCACAGTCCCGAGTaGCTGGCGCCCCCAGAAGAA +
Preference number: 5 (lower is better)
Translates to: LEQLLGTGLLVSQSHGPHGHSPE*LAPPEE
Trigger: TTCTTCTGGGGGCGCCAGCAACTCGGGACTGTGCCC...GTGTGGACCATGGGACTGGGACACCAGAAGTCCAGTGCCCAATAGCTGCTCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
CDS-3UTR CAA 90 bp GCACTGCTACACATGCAGGTCAGCAGCCTTGGCGGCTGCTGCCACCACAATATCCCCAGGTCCAGAGACTaGGAGTGCTCGATGCAGGAA +
Preference number: 5 (lower is better)
Translates to: ALLHMQVSSLGGCCHHNIPRSRD*ECSMQE
Trigger: TTCCTGCATCGAGCACTCCAAGTCTCTGGACCTGGG...GATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094666.4
CDS GCA 72 bp GGCCGTCGGGCGGCCGCAGCGCCTGAGCCCTCAGCATaGCCCGGCGGAGACGCCGGGTCTCCAGGTCGCGGT +
Preference number: 6 (lower is better)
Translates to: GRRAAAAPEPSA*PGGDAGSPGRG
Trigger: ACCGCGACCTGGAGACCCGGCGTCTCCGCCGGGGCATGCTGAGGGCTCAGGCGCTGCGGCCGCCCGACGGCC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS GCA 72 bp CCCATGATTACCGGTCCCAGCAGCCGCAGGCGCTCGTaGGGCCCGTGCGCGCGGCCGGTCCTCGGGGCGTGG +
Preference number: 6 (lower is better)
Translates to: PMITGPSSRRRS*GPCARPVLGAW
Trigger: CCACGCCCCGAGGACCGGCCGCGCGCACGGGCCGCACGAGCGCCTGCGGCTGCTGGGACCGGTAATCATGGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS CCA 72 bp AGCTGTGGAGCAGGGCAGGCAGCCCCGATCGAGGGTTaGCAGGTTCAGAGCGCAGGCTGCGCACCGACGGGA +
Preference number: 6 (lower is better)
Translates to: SCGAGQAAPIEG*QVQSAGCAPTG
Trigger: TCCCGTCGGTGCGCAGCCTGCGCTCTGAACCTGCCAACCCTCGATCGGGGCTGCCTGCCCTGCTCCACAGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS CAA 72 bp CCAGCCGTGGCCAGCTTCGGTGGGCACAGTCCCGAGTaGCTGGCGCCCCCAGAAGAAGCTCCCCTAGGCCCA +
Preference number: 6 (lower is better)
Translates to: PAVASFGGHSPE*LAPPEEAPLGP
Trigger: TGGGCCTAGGGGAGCTTCTTCTGGGGGCGCCAGCAACTCGGGACTGTGCCCACCGAAGCTGGCCACGGCTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS TCA 72 bp CCAGAGGGCTGCACCGTGATGATCACGTGTCCAGTCTaGGTCCGAGGACCCCAGGGTGGTGGCAGCCCCGGG +
Preference number: 6 (lower is better)
Translates to: PEGCTVMITCPV*VRGPQGGGSPG
Trigger: CCCGGGGCTGCCACCACCCTGGGGTCCTCGGACTCAGACTGGACACGTGATCATCACGGTGCAGCCCTCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS CCA 72 bp CACGTGTCCAGTCTGAGTCCGAGGACCCCAGGGTGGTaGCAGCCCCGGGCCCTTCAACGGGTAGCTGTGGAG +
Preference number: 6 (lower is better)
Translates to: HVSSLSPRTPGW*QPRALQRVAVE
Trigger: CTCCACAGCTACCCGTTGAAGGGCCCGGGGCTGCCACCACCCTGGGGTCCTCGGACTCAGACTGGACACGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS CCA 72 bp GATCACGTGTCCAGTCTGAGTCCGAGGACCCCAGGGTaGTGGCAGCCCCGGGCCCTTCAACGGGTAGCTGTG +
Preference number: 6 (lower is better)
Translates to: DHVSSLSPRTPG*WQPRALQRVAV
Trigger: CACAGCTACCCGTTGAAGGGCCCGGGGCTGCCACCACCCTGGGGTCCTCGGACTCAGACTGGACACGTGATC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS CCA 72 bp CCCAAACTGAGTCGGTCCAGCCGTGGCCAGCTTCGGTaGGCACAGTCCCGAGTTGCTGGCGCCCCCAGAAGA +
Preference number: 6 (lower is better)
Translates to: PKLSRSSRGQLR*AQSRVAGAPRR
Trigger: TCTTCTGGGGGCGCCAGCAACTCGGGACTGTGCCCACCGAAGCTGGCCACGGCTGGACCGACTCAGTTTGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS CAA 90 bp GCTGGCGCCCCCAGAAGAAGCTCCCCTAGGCCCAGGTCCAGAGACTaGGAGTGCTCGATGCAGGAACCAGAGGGCTGCACCGTGATGATC +
Preference number: 6 (lower is better)
Translates to: AGAPRRSSPRPRSRD*ECSMQEPEGCTVMI
Trigger: GATCATCACGGTGCAGCCCTCTGGTTCCTGCATCGAGCACTCCAAGTCTCTGGACCTGGGCCTAGGGGAGCTTCTTCTGGGGGCGCCAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS CCA 72 bp CCAGAAGAAGCTCCCCTAGGCCCAGGTCCAGAGACTTaGAGTGCTCGATGCAGGAACCAGAGGGCTGCACCG +
Preference number: 6 (lower is better)
Translates to: PEEAPLGPGPET*SARCRNQRAAP
Trigger: CGGTGCAGCCCTCTGGTTCCTGCATCGAGCACTCCAAGTCTCTGGACCTGGGCCTAGGGGAGCTTCTTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2
CDS GCA 72 bp AGAAGCTCCCCTAGGCCCAGGTCCAGAGACTTGGAGTaGTCGATGCAGGAACCAGAGGGCTGCACCGTGATG +
Preference number: 6 (lower is better)
Translates to: RSSPRPRSRDLE*SMQEPEGCTVM
Trigger: CATCACGGTGCAGCCCTCTGGTTCCTGCATCGAGCACTCCAAGTCTCTGGACCTGGGCCTAGGGGAGCTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094666.4
ENSMUST00000238733.2