Pregenerated sensors for TMEM200B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070720Ensembl transcript IDs: ENSMUST00000094666.4, ENSMUST00000238733.2
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | CAGCTGGCACTGCTACACATGCAGGTCAGCAGCCTTGGCGGCTGCTaGCACCACAATATCCATCCTAGCCTCGGAGGTGACTGGAGCAGC | + |
Preference number: 1 (lower is better) Translates to: QLALLHMQVSSLGGC*HHNIHPSLGGDWSS Trigger: GCTGCTCCAGTCACCTCCGAGGCTAGGATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGCCAGCTG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR GCA 90 bp | GTGCAGCTGGCACTGCTACACATGCAGGTCAGCAGCCTTGGCGGCTaGTGCCACCACAATATCCATCCTAGCCTCGGAGGTGACTGGAGC | + |
Preference number: 1 (lower is better) Translates to: VQLALLHMQVSSLGG*CHHNIHPSLGGDWS Trigger: GCTCCAGTCACCTCCGAGGCTAGGATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGCCAGCTGCAC 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR GCA 90 bp | CACATGCCCCTGGAGCTCGTTCGGTGCAGCTGGCACTGCTACACATaGAGGTCAGCAGCCTTGGCGGCTGCTGCCACCACAATATCCATC | + |
Preference number: 1 (lower is better) Translates to: HMPLELVRCSWHCYT*RSAALAAAATTISI Trigger: GATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGCCAGCTGCACCGAACGAGCTCCAGGGGCATGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR GCA 90 bp | CGGAGCCTGTCCCAGCCTGGGACATCCCAACCTACCACTGTTGTTTaGCAAGGAACCCTGTGCATCTCACGGTGCTCTTGGCCTACCCTG | + |
Preference number: 1 (lower is better) Translates to: RSLSQPGTSQPTTVV*QGTLCISRCSWPTL Trigger: CAGGGTAGGCCAAGAGCACCGTGAGATGCACAGGGTTCCTTGGCAAACAACAGTGGTAGGTTGGGATGTCCCAGGCTGGGACAGGCTCCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR GCA 90 bp | CCTGGGACATCCCAACCTACCACTGTTGTTTGCCAAGGAACCCTGTaGATCTCACGGTGCTCTTGGCCTACCCTGCAGCCCTTCAGGTGC | + |
Preference number: 1 (lower is better) Translates to: PGTSQPTTVVCQGTL*ISRCSWPTLQPFRC Trigger: GCACCTGAAGGGCTGCAGGGTAGGCCAAGAGCACCGTGAGATGCACAGGGTTCCTTGGCAAACAACAGTGGTAGGTTGGGATGTCCCAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CCA 90 bp | CCTACCCTGCAGCCCTTCAGGTGCCGGTCCTGGGCTAAGGCCACATaGGCTGAAGAAATTCCTGAGGCTGAATCATGCTGGTGTCCACAT | + |
Preference number: 1 (lower is better) Translates to: PTLQPFRCRSWAKAT*AEEIPEAESCWCPH Trigger: ATGTGGACACCAGCATGATTCAGCCTCAGGAATTTCTTCAGCCCATGTGGCCTTAGCCCAGGACCGGCACCTGAAGGGCTGCAGGGTAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CCA 90 bp | TTCCTGAGGCTGAATCATGCTGGTGTCCACATTAACACATGCCCCTaGAGCTCGTTCGGTGCAGCTGGCACTGCTACACATGCAGGTCAG | + |
Preference number: 1 (lower is better) Translates to: FLRLNHAGVHINTCP*SSFGAAGTATHAGQ Trigger: CTGACCTGCATGTGTAGCAGTGCCAGCTGCACCGAACGAGCTCCAGGGGCATGTGTTAATGTGGACACCAGCATGATTCAGCCTCAGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR-3UTR GCA 90 bp | CGGTGCTCTTGGCCTACCCTGCAGCCCTTCAGGTGCCGGTCCTGGGCTAAGGCCGTCCACATTAACACATaGCCCTGGAGCTCGTTCGGT | + |
Preference number: 2 (lower is better) Translates to: RCSWPTLQPFRCRSWAKAVHINT*PWSSFG Trigger: ACCGAACGAGCTCCAGGGGCATGTGTTAATGTGGAC...GGCCTTAGCCCAGGACCGGCACCTGAAGGGCTGCAGGGTAGGCCAAGAGCACCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR-3UTR GCA 90 bp | GCCTGTCCCAGCCTGGGACATCCCAACCTACCACTGTTGTTTGCCAAGGAACCCCTGCAGCCCTTCAGGTaGCGGTCCTGGGCTAAGGCC | + |
Preference number: 2 (lower is better) Translates to: ACPSLGHPNLPLLFAKEPLQPFR*RSWAKA Trigger: GGCCTTAGCCCAGGACCGGCACCTGAAGGGCTGCAG...GGGTTCCTTGGCAAACAACAGTGGTAGGTTGGGATGTCCCAGGCTGGGACAGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CAA 90 bp | CTCGTTCGGTGCAGCTGGCACTGCTACACATGCAGGTCAGCAGCCTaGGCGGCTGCTGCCACCACAATATCCATCCTAGCCTCGGAGGTG | + |
Preference number: 2 (lower is better) Translates to: LVRCSWHCYTCRSAA*AAAATTISILASEV Trigger: CACCTCCGAGGCTAGGATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGCCAGCTGCACCGAACGAG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR-3UTR CCA 90 bp | TTTGCCAAGGAACCCTGTGCATCTCACGGTGCTCTTGGCCTACCCTGCAGCCCTGCAGGTCAGCAGCCTTaGCGGCTGCTGCCACCACAA | + |
Preference number: 2 (lower is better) Translates to: FAKEPCASHGALGLPCSPAGQQP*RLLPPQ Trigger: TTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGC...AGGGCTGCAGGGTAGGCCAAGAGCACCGTGAGATGCACAGGGTTCCTTGGCAAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR-3UTR CCA 90 bp | GCACTGCTACACATGCAGGTCAGCAGCCTTGGCGGCTGCTGCCACCACAATATCGGTGTCCCAGTCCCATaGTCCACACTGGTAGCCTCA | + |
Preference number: 2 (lower is better) Translates to: ALLHMQVSSLGGCCHHNIGVPVP*STLVAS Trigger: TGAGGCTACCAGTGTGGACCATGGGACTGGGACACC...GATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CAA 90 bp | TTAGACGGAGCCTGTCCCAGCCTGGGACATCCCAACCTACCACTGTaGTTTGCCAAGGAACCCTGTGCATCTCACGGTGCTCTTGGCCTA | + |
Preference number: 2 (lower is better) Translates to: LDGACPSLGHPNLPL*FAKEPCASHGALGL Trigger: TAGGCCAAGAGCACCGTGAGATGCACAGGGTTCCTTGGCAAACAACAGTGGTAGGTTGGGATGTCCCAGGCTGGGACAGGCTCCGTCTAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CAA 90 bp | CACTTGACTGAAGGAAGAACAGACCTGAGGTGGTGGCAGTTAGAGTaGCGGTCACTGCCCCAGACAGCTGCAGAGGGTCTCATTCCACCT | + |
Preference number: 2 (lower is better) Translates to: HLTEGRTDLRWWQLE*RSLPQTAAEGLIPP Trigger: AGGTGGAATGAGACCCTCTGCAGCTGTCTGGGGCAGTGACCGCAACTCTAACTGCCACCACCTCAGGTCTGTTCTTCCTTCAGTCAAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR-3UTR CCA 90 bp | AGACGGAGCCTGTCCCAGCCTGGGACATCCCAACCTACCACTGTTGTTTGCCAAGACTGGAGCAGCTATTaGGCACTGGACTTCTGGTGT | + |
Preference number: 2 (lower is better) Translates to: RRSLSQPGTSQPTTVVCQDWSSY*ALDFWC Trigger: ACACCAGAAGTCCAGTGCCCAATAGCTGCTCCAGTC...TTGGCAAACAACAGTGGTAGGTTGGGATGTCCCAGGCTGGGACAGGCTCCGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR-3UTR CCA 90 bp | CAGGACTACCAACTTAGACGGAGCCTGTCCCAGCCTGGGACATCCCAACCTACCTGGGCTAAGGCCACATaGGCTGAAGAAATTCCTGAG | + |
Preference number: 2 (lower is better) Translates to: QDYQLRRSLSQPGTSQPTWAKAT*AEEIPE Trigger: CTCAGGAATTTCTTCAGCCCATGTGGCCTTAGCCCA...GGTAGGTTGGGATGTCCCAGGCTGGGACAGGCTCCGTCTAAGTTGGTAGTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR-3UTR CCA 90 bp | CAGAGCCACTTGACTGAAGGAAGAACAGACCTGAGGTGGTGGCAGTTAGAGTTGATCTCACGGTGCTCTTaGCCTACCCTGCAGCCCTTC | + |
Preference number: 2 (lower is better) Translates to: QSHLTEGRTDLRWWQLELISRCS*PTLQPF Trigger: GAAGGGCTGCAGGGTAGGCCAAGAGCACCGTGAGAT...CAACTCTAACTGCCACCACCTCAGGTCTGTTCTTCCTTCAGTCAAGTGGCTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR GCA 72 bp | CTGGAGCTCGTTCGGTGCAGCTGGCACTGCTACACATaGAGGTCAGCAGCCTTGGCGGCTGCTGCCACCACA | + |
Preference number: 3 (lower is better) Translates to: LELVRCSWHCYT*RSAALAAAATT Trigger: TGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGCCAGCTGCACCGAACGAGCTCCAG 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR GCA 72 bp | TCACGGTGCTCTTGGCCTACCCTGCAGCCCTTCAGGTaGCGGTCCTGGGCTAAGGCCACATGGGCTGAAGAA | + |
Preference number: 3 (lower is better) Translates to: SRCSWPTLQPFR*RSWAKATWAEE Trigger: TTCTTCAGCCCATGTGGCCTTAGCCCAGGACCGGCACCTGAAGGGCTGCAGGGTAGGCCAAGAGCACCGTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR GCA 72 bp | CTGCTACACATGCAGGTCAGCAGCCTTGGCGGCTGCTaGCACCACAATATCCATCCTAGCCTCGGAGGTGAC | + |
Preference number: 3 (lower is better) Translates to: LLHMQVSSLGGC*HHNIHPSLGGD Trigger: GTCACCTCCGAGGCTAGGATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAG 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR GCA 72 bp | GCACTGCTACACATGCAGGTCAGCAGCCTTGGCGGCTaGTGCCACCACAATATCCATCCTAGCCTCGGAGGT | + |
Preference number: 3 (lower is better) Translates to: ALLHMQVSSLGG*CHHNIHPSLGG Trigger: ACCTCCGAGGCTAGGATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CCA 72 bp | GGAGGTGACTGGAGCAGCTATTGGGCACTGGACTTCTaGTGTCCCAGTCCCATGGTCCACACTGGTAGCCTC | + |
Preference number: 3 (lower is better) Translates to: GGDWSSYWALDF*CPSPMVHTGSL Trigger: GAGGCTACCAGTGTGGACCATGGGACTGGGACACCAGAAGTCCAGTGCCCAATAGCTGCTCCAGTCACCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CCA 72 bp | CTAGCCTCGGAGGTGACTGGAGCAGCTATTGGGCACTaGACTTCTGGTGTCCCAGTCCCATGGTCCACACTG | + |
Preference number: 3 (lower is better) Translates to: LASEVTGAAIGH*TSGVPVPWSTL Trigger: CAGTGTGGACCATGGGACTGGGACACCAGAAGTCCAGTGCCCAATAGCTGCTCCAGTCACCTCCGAGGCTAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CCA 72 bp | TCTTGGCCTACCCTGCAGCCCTTCAGGTGCCGGTCCTaGGCTAAGGCCACATGGGCTGAAGAAATTCCTGAG | + |
Preference number: 3 (lower is better) Translates to: SWPTLQPFRCRS*AKATWAEEIPE Trigger: CTCAGGAATTTCTTCAGCCCATGTGGCCTTAGCCCAGGACCGGCACCTGAAGGGCTGCAGGGTAGGCCAAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR GCA 72 bp | TCCCAACCTACCACTGTTGTTTGCCAAGGAACCCTGTaGATCTCACGGTGCTCTTGGCCTACCCTGCAGCCC | + |
Preference number: 3 (lower is better) Translates to: SQPTTVVCQGTL*ISRCSWPTLQP Trigger: GGGCTGCAGGGTAGGCCAAGAGCACCGTGAGATGCACAGGGTTCCTTGGCAAACAACAGTGGTAGGTTGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CCA 72 bp | ATCCATCCTAGCCTCGGAGGTGACTGGAGCAGCTATTaGGCACTGGACTTCTGGTGTCCCAGTCCCATGGTC | + |
Preference number: 3 (lower is better) Translates to: IHPSLGGDWSSY*ALDFWCPSPMV Trigger: GACCATGGGACTGGGACACCAGAAGTCCAGTGCCCAATAGCTGCTCCAGTCACCTCCGAGGCTAGGATGGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CCA 72 bp | CAGCCCTTCAGGTGCCGGTCCTGGGCTAAGGCCACATaGGCTGAAGAAATTCCTGAGGCTGAATCATGCTGG | + |
Preference number: 3 (lower is better) Translates to: QPFRCRSWAKAT*AEEIPEAESCW Trigger: CCAGCATGATTCAGCCTCAGGAATTTCTTCAGCCCATGTGGCCTTAGCCCAGGACCGGCACCTGAAGGGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR GCA 72 bp | TCCCAGCCTGGGACATCCCAACCTACCACTGTTGTTTaGCAAGGAACCCTGTGCATCTCACGGTGCTCTTGG | + |
Preference number: 3 (lower is better) Translates to: SQPGTSQPTTVV*QGTLCISRCSW Trigger: CCAAGAGCACCGTGAGATGCACAGGGTTCCTTGGCAAACAACAGTGGTAGGTTGGGATGTCCCAGGCTGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CCA 72 bp | TGCCACCACAATATCCATCCTAGCCTCGGAGGTGACTaGAGCAGCTATTGGGCACTGGACTTCTGGTGTCCC | + |
Preference number: 3 (lower is better) Translates to: CHHNIHPSLGGD*SSYWALDFWCP Trigger: GGGACACCAGAAGTCCAGTGCCCAATAGCTGCTCCAGTCACCTCCGAGGCTAGGATGGATATTGTGGTGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CCA 72 bp | GCTATTGGGCACTGGACTTCTGGTGTCCCAGTCCCATaGTCCACACTGGTAGCCTCACAGCAGGTTATACCT | + |
Preference number: 3 (lower is better) Translates to: AIGHWTSGVPVP*STLVASQQVIP Trigger: AGGTATAACCTGCTGTGAGGCTACCAGTGTGGACCATGGGACTGGGACACCAGAAGTCCAGTGCCCAATAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CCA 72 bp | AGCCACTTGACTGAAGGAAGAACAGACCTGAGGTGGTaGCAGTTAGAGTTGCGGTCACTGCCCCAGACAGCT | + |
Preference number: 3 (lower is better) Translates to: SHLTEGRTDLRW*QLELRSLPQTA Trigger: AGCTGTCTGGGGCAGTGACCGCAACTCTAACTGCCACCACCTCAGGTCTGTTCTTCCTTCAGTCAAGTGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CCA 72 bp | CAGAGCCACTTGACTGAAGGAAGAACAGACCTGAGGTaGTGGCAGTTAGAGTTGCGGTCACTGCCCCAGACA | + |
Preference number: 3 (lower is better) Translates to: QSHLTEGRTDLR*WQLELRSLPQT Trigger: TGTCTGGGGCAGTGACCGCAACTCTAACTGCCACCACCTCAGGTCTGTTCTTCCTTCAGTCAAGTGGCTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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CDS-3UTR CCA 90 bp | CACATGCCCCTGGAGCTCGTTCGGTGCAGCTGGCACTGCTACACATGCAGGTCACCGAGGACCCCAGGGTaGTGGCAGCCCCGGGCCCTT | + |
Preference number: 4 (lower is better) Translates to: HMPLELVRCSWHCYTCRSPRTPG*WQPRAL Trigger: AAGGGCCCGGGGCTGCCACCACCCTGGGGTCCTCGG...TGACCTGCATGTGTAGCAGTGCCAGCTGCACCGAACGAGCTCCAGGGGCATGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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CDS-3UTR GCA 90 bp | CTGGACTTCTGGTGTCCCAGTCCCATGGTCCACACTGGTAGCCTCACAGCAGGTCCACGGCGATGCCCATaGCCACCAGCACCACGAGCG | + |
Preference number: 4 (lower is better) Translates to: LDFWCPSPMVHTGSLTAGPRRCP*PPAPRA Trigger: CGCTCGTGGTGCTGGTGGGCATGGGCATCGCCGTGG...ACCTGCTGTGAGGCTACCAGTGTGGACCATGGGACTGGGACACCAGAAGTCCAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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CDS-3UTR CCA 90 bp | GGAGGTGACTGGAGCAGCTATTGGGCACTGGACTTCTGGTGTCCCAGTCCCATGAGGACCCCAGGGTGGTaGCAGCCCCGGGCCCTTCAA | + |
Preference number: 4 (lower is better) Translates to: GGDWSSYWALDFWCPSPMRTPGW*QPRALQ Trigger: TTGAAGGGCCCGGGGCTGCCACCACCCTGGGGTCCT...CATGGGACTGGGACACCAGAAGTCCAGTGCCCAATAGCTGCTCCAGTCACCTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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CDS-3UTR CCA 90 bp | GTTTGCCAAGGAACCCTGTGCATCTCACGGTGCTCTTGGCCTACCCTGCAGCCCGAGTCGGTCCAGCCGTaGCCAGCTTCGGTGGGCACA | + |
Preference number: 4 (lower is better) Translates to: VCQGTLCISRCSWPTLQPESVQP*PASVGT Trigger: TGTGCCCACCGAAGCTGGCCACGGCTGGACCGACTC...GGGCTGCAGGGTAGGCCAAGAGCACCGTGAGATGCACAGGGTTCCTTGGCAAAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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CDS-3UTR TCA 90 bp | AGACCTGAGGTGGTGGCAGTTAGAGTTGCGGTCACTGCCCCAGACAGCTGCAGAACAGGCCGACGCCCATaGTTACCGGTCCCAGCAGCC | + |
Preference number: 4 (lower is better) Translates to: RPEVVAVRVAVTAPDSCRTGRRP*LPVPAA Trigger: GGCTGCTGGGACCGGTAATCATGGGCGTCGGCCTGT...TCTGCAGCTGTCTGGGGCAGTGACCGCAACTCTAACTGCCACCACCTCAGGTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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CDS-3UTR GCA 90 bp | CTGCCCCAGACAGCTGCAGAGGGTCTCATTCCACCTCATCGCCCACCTTCCCCCCAGGAACCAGAGGGCTaGACCGTGATGATCACGTGT | + |
Preference number: 4 (lower is better) Translates to: LPQTAAEGLIPPHRPPSPQEPEG*TVMITC Trigger: ACACGTGATCATCACGGTGCAGCCCTCTGGTTCCTG...GGGGGAAGGTGGGCGATGAGGTGGAATGAGACCCTCTGCAGCTGTCTGGGGCAG 61% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CAA 72 bp | TGCAGCTGGCACTGCTACACATGCAGGTCAGCAGCCTaGGCGGCTGCTGCCACCACAATATCCATCCTAGCC | + |
Preference number: 4 (lower is better) Translates to: CSWHCYTCRSAA*AAAATTISILA Trigger: GGCTAGGATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGCCAGCTGCA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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CDS-3UTR CCA 90 bp | CATTTCCACCAGGACTACCAACTTAGACGGAGCCTGTCCCAGCCTGGGACATCCACAGTCCCGAGTTGCTaGCGCCCCCAGAAGAAGCTC | + |
Preference number: 4 (lower is better) Translates to: HFHQDYQLRRSLSQPGTSTVPSC*RPQKKL Trigger: GAGCTTCTTCTGGGGGCGCCAGCAACTCGGGACTGT...GGATGTCCCAGGCTGGGACAGGCTCCGTCTAAGTTGGTAGTCCTGGTGGAAATG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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CDS-3UTR CCA 90 bp | TACACATGCAGGTCAGCAGCCTTGGCGGCTGCTGCCACCACAATATCCATCCTACGTGGCCAGCTTCGGTaGGCACAGTCCCGAGTTGCT | + |
Preference number: 4 (lower is better) Translates to: YTCRSAALAAAATTISILRGQLR*AQSRVA Trigger: AGCAACTCGGGACTGTGCCCACCGAAGCTGGCCACG...TAGGATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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CDS-3UTR TCA 90 bp | CTGGACTTCTGGTGTCCCAGTCCCATGGTCCACACTGGTAGCCTCACAGCAGGTATGTGTTGGCACAGATaGACACGAACAGGCCGACGC | + |
Preference number: 4 (lower is better) Translates to: LDFWCPSPMVHTGSLTAGMCWHR*TRTGRR Trigger: GCGTCGGCCTGTTCGTGTTCATCTGTGCCAACACAT...ACCTGCTGTGAGGCTACCAGTGTGGACCATGGGACTGGGACACCAGAAGTCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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CDS-3UTR TCA 90 bp | TACACATGCAGGTCAGCAGCCTTGGCGGCTGCTGCCACCACAATATCCATCCTAATCACGTGTCCAGTCTaGGTCCGAGGACCCCAGGGT | + |
Preference number: 4 (lower is better) Translates to: YTCRSAALAAAATTISILITCPV*VRGPQG Trigger: ACCCTGGGGTCCTCGGACTCAGACTGGACACGTGAT...TAGGATGGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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CDS-3UTR CCA 90 bp | CACTGCTACACATGCAGGTCAGCAGCCTTGGCGGCTGCTGCCACCACAATATCCCCAGGTCCAGAGACTTaGAGTGCTCGATGCAGGAAC | + |
Preference number: 4 (lower is better) Translates to: HCYTCRSAALAAAATTISPGPET*SARCRN Trigger: GTTCCTGCATCGAGCACTCCAAGTCTCTGGACCTGG...GGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CAA 72 bp | GCCTGTCCCAGCCTGGGACATCCCAACCTACCACTGTaGTTTGCCAAGGAACCCTGTGCATCTCACGGTGCT | + |
Preference number: 4 (lower is better) Translates to: ACPSLGHPNLPL*FAKEPCASHGA Trigger: AGCACCGTGAGATGCACAGGGTTCCTTGGCAAACAACAGTGGTAGGTTGGGATGTCCCAGGCTGGGACAGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CAA 72 bp | GAAGGAAGAACAGACCTGAGGTGGTGGCAGTTAGAGTaGCGGTCACTGCCCCAGACAGCTGCAGAGGGTCTC | + |
Preference number: 4 (lower is better) Translates to: EGRTDLRWWQLE*RSLPQTAAEGL Trigger: GAGACCCTCTGCAGCTGTCTGGGGCAGTGACCGCAACTCTAACTGCCACCACCTCAGGTCTGTTCTTCCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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CDS-3UTR GCA 90 bp | CACTGCTACACATGCAGGTCAGCAGCCTTGGCGGCTGCTGCCACCACAATATCCTCCAGAGACTTGGAGTaGTCGATGCAGGAACCAGAG | + |
Preference number: 4 (lower is better) Translates to: HCYTCRSAALAAAATTISSRDLE*SMQEPE Trigger: CTCTGGTTCCTGCATCGAGCACTCCAAGTCTCTGGA...GGATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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3UTR CAA 72 bp | GTCCCAGCCTGGGACATCCCAACCTACCACTGTTGTTaGCCAAGGAACCCTGTGCATCTCACGGTGCTCTTG | + |
Preference number: 4 (lower is better) Translates to: VPAWDIPTYHCC*PRNPVHLTVLL Trigger: CAAGAGCACCGTGAGATGCACAGGGTTCCTTGGCAAACAACAGTGGTAGGTTGGGATGTCCCAGGCTGGGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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CDS TCA 90 bp | GGCAGCAGCGCGTCCCAGCCTGGGCCGTCGGGCGGCCGCAGCGCCTaGGCCCTCAGCATGCCCCGGCGGAGACGCCGGGTCTCCAGGTCG | + |
Preference number: 5 (lower is better) Translates to: GSSASQPGPSGGRSA*ALSMPRRRRRVSRS Trigger: CGACCTGGAGACCCGGCGTCTCCGCCGGGGCATGCTGAGGGCTCAGGCGCTGCGGCCGCCCGACGGCCCAGGCTGGGACGCGCTGCTGCC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS CCA 90 bp | AAGTTTCGGGTTCCGCGACGGCGCCCGGGGACCCATGCGCGGGACTaGGCAGCAGCGCGTCCCAGCCTGGGCCGTCGGGCGGCCGCAGCG | + |
Preference number: 5 (lower is better) Translates to: KFRVPRRRPGTHARD*AAARPSLGRRAAAA Trigger: CGCTGCGGCCGCCCGACGGCCCAGGCTGGGACGCGCTGCTGCCCAGTCCCGCGCATGGGTCCCCGGGCGCCGTCGCGGAACCCGAAACTT 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS GCA 90 bp | AGGCCGACGCCCATGATTACCGGTCCCAGCAGCCGCAGGCGCTCGTaGGGCCCGTGCGCGCGGCCGGTCCTCGGGGCGTGGGTGTGGGAG | + |
Preference number: 5 (lower is better) Translates to: RPTPMITGPSSRRRS*GPCARPVLGAWVWE Trigger: CTCCCACACCCACGCCCCGAGGACCGGCCGCGCGCACGGGCCGCACGAGCGCCTGCGGCTGCTGGGACCGGTAATCATGGGCGTCGGCCT 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS GCA 90 bp | GCCAGGTCCCAAGTTTCGGGTTCCGCGACGGCGCCCGGGGACCCATaGGCGGGACTGGGCAGCAGCGCGTCCCAGCCTGGGCCGTCGGGC | + |
Preference number: 5 (lower is better) Translates to: ARSQVSGSATAPGDP*AGLGSSASQPGPSG Trigger: GCCCGACGGCCCAGGCTGGGACGCGCTGCTGCCCAGTCCCGCGCATGGGTCCCCGGGCGCCGTCGCGGAACCCGAAACTTGGGACCTGGC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS CCA 90 bp | TCAACGGGTAGCTGTGGAGCAGGGCAGGCAGCCCCGATCGAGGGTTaGCAGGTTCAGAGCGCAGGCTGCGCACCGACGGGACGGGCGAGG | + |
Preference number: 5 (lower is better) Translates to: STGSCGAGQAAPIEG*QVQSAGCAPTGRAR Trigger: CCTCGCCCGTCCCGTCGGTGCGCAGCCTGCGCTCTGAACCTGCCAACCCTCGATCGGGGCTGCCTGCCCTGCTCCACAGCTACCCGTTGA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS CCA 90 bp | CGTGATGATCACGTGTCCAGTCTGAGTCCGAGGACCCCAGGGTGGTaGCAGCCCCGGGCCCTTCAACGGGTAGCTGTGGAGCAGGGCAGG | + |
Preference number: 5 (lower is better) Translates to: RDDHVSSLSPRTPGW*QPRALQRVAVEQGR Trigger: CCTGCCCTGCTCCACAGCTACCCGTTGAAGGGCCCGGGGCTGCCACCACCCTGGGGTCCTCGGACTCAGACTGGACACGTGATCATCACG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS CCA 90 bp | CACCGTGATGATCACGTGTCCAGTCTGAGTCCGAGGACCCCAGGGTaGTGGCAGCCCCGGGCCCTTCAACGGGTAGCTGTGGAGCAGGGC | + |
Preference number: 5 (lower is better) Translates to: HRDDHVSSLSPRTPG*WQPRALQRVAVEQG Trigger: GCCCTGCTCCACAGCTACCCGTTGAAGGGCCCGGGGCTGCCACCACCCTGGGGTCCTCGGACTCAGACTGGACACGTGATCATCACGGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS TCA 90 bp | ATGCAGGAACCAGAGGGCTGCACCGTGATGATCACGTGTCCAGTCTaGGTCCGAGGACCCCAGGGTGGTGGCAGCCCCGGGCCCTTCAAC | + |
Preference number: 5 (lower is better) Translates to: MQEPEGCTVMITCPV*VRGPQGGGSPGPFN Trigger: GTTGAAGGGCCCGGGGCTGCCACCACCCTGGGGTCCTCGGACTCAGACTGGACACGTGATCATCACGGTGCAGCCCTCTGGTTCCTGCAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS-3UTR CAA 90 bp | GGAGGTGACTGGAGCAGCTATTGGGCACTGGACTTCTGGTGTCCCAGTCCCATGAGCCCCGATCGAGGGTaGGCAGGTTCAGAGCGCAGG | + |
Preference number: 5 (lower is better) Translates to: GGDWSSYWALDFWCPSPMSPDRG*AGSERR Trigger: CCTGCGCTCTGAACCTGCCAACCCTCGATCGGGGCT...CATGGGACTGGGACACCAGAAGTCCAGTGCCCAATAGCTGCTCCAGTCACCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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CDS-3UTR CAA 90 bp | CTGGAGCAGCTATTGGGCACTGGACTTCTGGTGTCCCAGTCCCATGGTCCACACGGGCACAGTCCCGAGTaGCTGGCGCCCCCAGAAGAA | + |
Preference number: 5 (lower is better) Translates to: LEQLLGTGLLVSQSHGPHGHSPE*LAPPEE Trigger: TTCTTCTGGGGGCGCCAGCAACTCGGGACTGTGCCC...GTGTGGACCATGGGACTGGGACACCAGAAGTCCAGTGCCCAATAGCTGCTCCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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CDS-3UTR CAA 90 bp | GCACTGCTACACATGCAGGTCAGCAGCCTTGGCGGCTGCTGCCACCACAATATCCCCAGGTCCAGAGACTaGGAGTGCTCGATGCAGGAA | + |
Preference number: 5 (lower is better) Translates to: ALLHMQVSSLGGCCHHNIPRSRD*ECSMQE Trigger: TTCCTGCATCGAGCACTCCAAGTCTCTGGACCTGGG...GATATTGTGGTGGCAGCAGCCGCCAAGGCTGCTGACCTGCATGTGTAGCAGTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094666.4 |
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CDS GCA 72 bp | GGCCGTCGGGCGGCCGCAGCGCCTGAGCCCTCAGCATaGCCCGGCGGAGACGCCGGGTCTCCAGGTCGCGGT | + |
Preference number: 6 (lower is better) Translates to: GRRAAAAPEPSA*PGGDAGSPGRG Trigger: ACCGCGACCTGGAGACCCGGCGTCTCCGCCGGGGCATGCTGAGGGCTCAGGCGCTGCGGCCGCCCGACGGCC 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS GCA 72 bp | CCCATGATTACCGGTCCCAGCAGCCGCAGGCGCTCGTaGGGCCCGTGCGCGCGGCCGGTCCTCGGGGCGTGG | + |
Preference number: 6 (lower is better) Translates to: PMITGPSSRRRS*GPCARPVLGAW Trigger: CCACGCCCCGAGGACCGGCCGCGCGCACGGGCCGCACGAGCGCCTGCGGCTGCTGGGACCGGTAATCATGGG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS CCA 72 bp | AGCTGTGGAGCAGGGCAGGCAGCCCCGATCGAGGGTTaGCAGGTTCAGAGCGCAGGCTGCGCACCGACGGGA | + |
Preference number: 6 (lower is better) Translates to: SCGAGQAAPIEG*QVQSAGCAPTG Trigger: TCCCGTCGGTGCGCAGCCTGCGCTCTGAACCTGCCAACCCTCGATCGGGGCTGCCTGCCCTGCTCCACAGCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS CAA 72 bp | CCAGCCGTGGCCAGCTTCGGTGGGCACAGTCCCGAGTaGCTGGCGCCCCCAGAAGAAGCTCCCCTAGGCCCA | + |
Preference number: 6 (lower is better) Translates to: PAVASFGGHSPE*LAPPEEAPLGP Trigger: TGGGCCTAGGGGAGCTTCTTCTGGGGGCGCCAGCAACTCGGGACTGTGCCCACCGAAGCTGGCCACGGCTGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS TCA 72 bp | CCAGAGGGCTGCACCGTGATGATCACGTGTCCAGTCTaGGTCCGAGGACCCCAGGGTGGTGGCAGCCCCGGG | + |
Preference number: 6 (lower is better) Translates to: PEGCTVMITCPV*VRGPQGGGSPG Trigger: CCCGGGGCTGCCACCACCCTGGGGTCCTCGGACTCAGACTGGACACGTGATCATCACGGTGCAGCCCTCTGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS CCA 72 bp | CACGTGTCCAGTCTGAGTCCGAGGACCCCAGGGTGGTaGCAGCCCCGGGCCCTTCAACGGGTAGCTGTGGAG | + |
Preference number: 6 (lower is better) Translates to: HVSSLSPRTPGW*QPRALQRVAVE Trigger: CTCCACAGCTACCCGTTGAAGGGCCCGGGGCTGCCACCACCCTGGGGTCCTCGGACTCAGACTGGACACGTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS CCA 72 bp | GATCACGTGTCCAGTCTGAGTCCGAGGACCCCAGGGTaGTGGCAGCCCCGGGCCCTTCAACGGGTAGCTGTG | + |
Preference number: 6 (lower is better) Translates to: DHVSSLSPRTPG*WQPRALQRVAV Trigger: CACAGCTACCCGTTGAAGGGCCCGGGGCTGCCACCACCCTGGGGTCCTCGGACTCAGACTGGACACGTGATC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS CCA 72 bp | CCCAAACTGAGTCGGTCCAGCCGTGGCCAGCTTCGGTaGGCACAGTCCCGAGTTGCTGGCGCCCCCAGAAGA | + |
Preference number: 6 (lower is better) Translates to: PKLSRSSRGQLR*AQSRVAGAPRR Trigger: TCTTCTGGGGGCGCCAGCAACTCGGGACTGTGCCCACCGAAGCTGGCCACGGCTGGACCGACTCAGTTTGGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS CAA 90 bp | GCTGGCGCCCCCAGAAGAAGCTCCCCTAGGCCCAGGTCCAGAGACTaGGAGTGCTCGATGCAGGAACCAGAGGGCTGCACCGTGATGATC | + |
Preference number: 6 (lower is better) Translates to: AGAPRRSSPRPRSRD*ECSMQEPEGCTVMI Trigger: GATCATCACGGTGCAGCCCTCTGGTTCCTGCATCGAGCACTCCAAGTCTCTGGACCTGGGCCTAGGGGAGCTTCTTCTGGGGGCGCCAGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS CCA 72 bp | CCAGAAGAAGCTCCCCTAGGCCCAGGTCCAGAGACTTaGAGTGCTCGATGCAGGAACCAGAGGGCTGCACCG | + |
Preference number: 6 (lower is better) Translates to: PEEAPLGPGPET*SARCRNQRAAP Trigger: CGGTGCAGCCCTCTGGTTCCTGCATCGAGCACTCCAAGTCTCTGGACCTGGGCCTAGGGGAGCTTCTTCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |
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CDS GCA 72 bp | AGAAGCTCCCCTAGGCCCAGGTCCAGAGACTTGGAGTaGTCGATGCAGGAACCAGAGGGCTGCACCGTGATG | + |
Preference number: 6 (lower is better) Translates to: RSSPRPRSRDLE*SMQEPEGCTVM Trigger: CATCACGGTGCAGCCCTCTGGTTCCTGCATCGAGCACTCCAAGTCTCTGGACCTGGGCCTAGGGGAGCTTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094666.4 ENSMUST00000238733.2 |