Pregenerated sensors for TMEM198B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047090Ensembl transcript IDs: ENSMUST00000051011.14, ENSMUST00000139227.2
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGTGGAGCTGCAATCAGAATCCAGGTCCAGGATAGTGTGGGTGCCTaGGGCCTGGGTGCCTGGTACCAGCTCATACTCTCGAAGACTCTG | + |
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Preference number: 1 (lower is better) Translates to: SGAAIRIQVQDSVGA*GLGAWYQLILSKTL Trigger: CAGAGTCTTCGAGAGTATGAGCTGGTACCAGGCACCCAGGCCCCAGGCACCCACACTATCCTGGACCTGGATTCTGATTGCAGCTCCACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139227.2 |
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| 3UTR GCA 90 bp | TGTATGGGTCCTATGGGCTCAGGCCCTATCCACTTAGCAATCTCCTaGCCCCACCAGGGGTATCAGTGTCACTGGAGGTTAGGCTCAGGT | + |
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Preference number: 1 (lower is better) Translates to: CMGPMGSGPIHLAIS*PHQGYQCHWRLGSG Trigger: ACCTGAGCCTAACCTCCAGTGACACTGATACCCCTGGTGGGGGCAGGAGATTGCTAAGTGGATAGGGCCTGAGCCCATAGGACCCATACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139227.2 |
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| 3UTR CCA 90 bp | TGGTACCAGCTCATACTCTCGAAGACTCTGGAGATAACTTGGAGCTaGACTGTGAGCAGGGCTCCGGATATTGGGGGTAAGCTGGTTCCG | + |
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Preference number: 1 (lower is better) Translates to: WYQLILSKTLEITWS*TVSRAPDIGGKLVP Trigger: CGGAACCAGCTTACCCCCAATATCCGGAGCCCTGCTCACAGTCCAGCTCCAAGTTATCTCCAGAGTCTTCGAGAGTATGAGCTGGTACCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139227.2 |
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| 3UTR CCA 90 bp | TCAGAGGAGGGAGAGTTAGAATGGTCAGTAGCTGGGCCCGAATTCTaGTTTAGGAGGAAAGCTACTTTAAAAGACAGAAGGCACTTGGCT | + |
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Preference number: 1 (lower is better) Translates to: SEEGELEWSVAGPEF*FRRKATLKDRRHLA Trigger: AGCCAAGTGCCTTCTGTCTTTTAAAGTAGCTTTCCTCCTAAACCAGAATTCGGGCCCAGCTACTGACCATTCTAACTCTCCCTCCTCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| 3UTR CCA 90 bp | GGAAATAGATCTTGGTCAGGAGAATCAGAGGAGGGAGAGTTAGAATaGTCAGTAGCTGGGCCCGAATTCTGGTTTAGGAGGAAAGCTACT | + |
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Preference number: 1 (lower is better) Translates to: GNRSWSGESEEGELE*SVAGPEFWFRRKAT Trigger: AGTAGCTTTCCTCCTAAACCAGAATTCGGGCCCAGCTACTGACCATTCTAACTCTCCCTCCTCTGATTCTCCTGACCAAGATCTATTTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| 3UTR-3UTR CCA 90 bp | TCCTATGGGCTCAGGCCCTATCCACTTAGCAATCTCCTGCCCCCACCAGGGGTAGATAGTGTGGGTGCCTaGGGCCTGGGTGCCTGGTAC | + |
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Preference number: 2 (lower is better) Translates to: SYGLRPYPLSNLLPPPGVDSVGA*GLGAWY Trigger: GTACCAGGCACCCAGGCCCCAGGCACCCACACTATC...TACCCCTGGTGGGGGCAGGAGATTGCTAAGTGGATAGGGCCTGAGCCCATAGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139227.2 |
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| 3UTR-3UTR TCA 90 bp | GGGCACCTCTACTACTGGACAGAGGTAGGTGCTTGTACTTTGTCTTCCACCCCCCTTGGAGCTGGACTGTaGGCAGGGCTCCGGATATTG | + |
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Preference number: 2 (lower is better) Translates to: GHLYYWTEVGACTLSSTPLGAGL*AGLRIL Trigger: CAATATCCGGAGCCCTGCTCACAGTCCAGCTCCAAG...GGGGGTGGAAGACAAAGTACAAGCACCTACCTCTGTCCAGTAGTAGAGGTGCCC 57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000139227.2 |
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| 3UTR-3UTR GCA 90 bp | GGAAATCTGTATGGGTCCTATGGGCTCAGGCCCTATCCACTTAGCAATCTCCTGTGCCTGGGGCCTGGGTaGCTGGTACCAGCTCATACT | + |
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Preference number: 2 (lower is better) Translates to: GNLYGSYGLRPYPLSNLLCLGPG*LVPAHT Trigger: AGTATGAGCTGGTACCAGGCACCCAGGCCCCAGGCA...CAGGAGATTGCTAAGTGGATAGGGCCTGAGCCCATAGGACCCATACAGATTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139227.2 |
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| 3UTR-3UTR CCA 90 bp | GGGCACCTCTACTACTGGACAGAGGTAGGTGCTTGTACTTTGTCTTCCACCCCCGAGATAACTTGGAGCTaGACTGTGAGCAGGGCTCCG | + |
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Preference number: 2 (lower is better) Translates to: GHLYYWTEVGACTLSSTPEITWS*TVSRAP Trigger: CGGAGCCCTGCTCACAGTCCAGCTCCAAGTTATCTC...GGGGGTGGAAGACAAAGTACAAGCACCTACCTCTGTCCAGTAGTAGAGGTGCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139227.2 |
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| 3UTR-3UTR CCA 90 bp | CCTCTACTACTGGACAGAGGTAGGTGCTTGTACTTTGTCTTCCACCCCCTCCCCGTAGGGAAATCTGTATaGGTCCTATGGGCTCAGGCC | + |
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Preference number: 2 (lower is better) Translates to: PLLLDRGRCLYFVFHPLPVGKSV*VLWAQA Trigger: GGCCTGAGCCCATAGGACCCATACAGATTTCCCTAC...GGGGAGGGGGTGGAAGACAAAGTACAAGCACCTACCTCTGTCCAGTAGTAGAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051011.14 ENSMUST00000139227.2 |
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| 3UTR-3UTR CCA 90 bp | TGTGGTCCTCCTCCACTGAGGAGAGGGGGAAAGCAGCATGGAAGATGGAGCCCCAACTATCACTGGGTATaGTGGTGCATGCCTTTAGTC | + |
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Preference number: 2 (lower is better) Translates to: CGPPPLRRGGKQHGRWSPNYHWV*WCMPLV Trigger: GACTAAAGGCATGCACCACCATACCCAGTGATAGTT...GGGGCTCCATCTTCCATGCTGCTTTCCCCCTCTCCTCAGTGGAGGAGGACCACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| 3UTR-3UTR GCA 90 bp | CTCATACTCTCGAAGACTCTGGAGATAACTTGGAGCTGGACTGTGAGCAGGGCTCGAAGGAGCTGGAGATaGCTTTGCTGGTGGCTCAAG | + |
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Preference number: 2 (lower is better) Translates to: LILSKTLEITWSWTVSRARRSWR*LCWWLK Trigger: CTTGAGCCACCAGCAAAGGCATCTCCAGCTCCTTCG...AGCCCTGCTCACAGTCCAGCTCCAAGTTATCTCCAGAGTCTTCGAGAGTATGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139227.2 |
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| 3UTR-3UTR GCA 90 bp | CCTGTCTCTAAAAGGGTTGGTCTGGGCACAGAACCTATTCCCAAGTCTAAGAGGCCAGAAGAGTTCCGATaGCTCTTAGCCTCTTGCTGC | + |
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Preference number: 2 (lower is better) Translates to: PVSKRVGLGTEPIPKSKRPEEFR*LLASCC Trigger: GCAGCAAGAGGCTAAGAGGCATCGGAACTCTTCTGG...CCTCTTAGACTTGGGAATAGGTTCTGTGCCCAGACCAACCCTTTTAGAGACAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139227.2 |
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| 3UTR-3UTR GCA 90 bp | TGCCTGTCTCTAAAAGGGTTGGTCTGGGCACAGAACCTATTCCCAAGTCTAAGACTGGACAGAGGTAGGTaGTTGTACTTTGTCTTCCAC | + |
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Preference number: 2 (lower is better) Translates to: CLSLKGLVWAQNLFPSLRLDRGR*LYFVFH Trigger: GTGGAAGACAAAGTACAAGCACCTACCTCTGTCCAG...TCTTAGACTTGGGAATAGGTTCTGTGCCCAGACCAACCCTTTTAGAGACAGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051011.14 ENSMUST00000139227.2 |
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| 3UTR-3UTR GCA 90 bp | GGAGAATCAGAGGAGGGAGAGTTAGAATGGTCAGTAGCTGGGCCCGAATTCTGGTATAAGAATTTTCTCTaGCTGTCTCTAAAAGGGTTG | + |
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Preference number: 2 (lower is better) Translates to: GESEEGELEWSVAGPEFWYKNFL*LSLKGL Trigger: CAACCCTTTTAGAGACAGGCAGAGAAAATTCTTATA...CCAGAATTCGGGCCCAGCTACTGACCATTCTAACTCTCCCTCCTCTGATTCTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| 3UTR-3UTR CCA 90 bp | TATTACAGATCTGCTGCTCAGGGGAAAGATATATTTTCTTTACTATGTCTGGGAGGGCACCTCTACTACTaGACAGAGGTAGGTGCTTGT | + |
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Preference number: 2 (lower is better) Translates to: YYRSAAQGKDIFSLLCLGGHLYY*TEVGAC Trigger: ACAAGCACCTACCTCTGTCCAGTAGTAGAGGTGCCC...TCCCAGACATAGTAAAGAAAATATATCTTTCCCCTGAGCAGCAGATCTGTAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| 3UTR-3UTR GCA 90 bp | TATTACAGATCTGCTGCTCAGGGGAAAGATATATTTTCTTTACTATGTCTGGGACTGGACAGAGGTAGGTaGTTGTACTTTGTCTTCCAC | + |
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Preference number: 2 (lower is better) Translates to: YYRSAAQGKDIFSLLCLGLDRGR*LYFVFH Trigger: GTGGAAGACAAAGTACAAGCACCTACCTCTGTCCAG...TCCCAGACATAGTAAAGAAAATATATCTTTCCCCTGAGCAGCAGATCTGTAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| 3UTR-3UTR GCA 90 bp | AAGAATTTTCTCTGCCTGTCTCTAAAAGGGTTGGTCTGGGCACAGAACCTATTCTATAAGAATTTTCTCTaGCTGTCTCTAAAAGGGTTG | + |
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Preference number: 2 (lower is better) Translates to: KNFLCLSLKGLVWAQNLFYKNFL*LSLKGL Trigger: CAACCCTTTTAGAGACAGGCAGAGAAAATTCTTATA...GAATAGGTTCTGTGCCCAGACCAACCCTTTTAGAGACAGGCAGAGAAAATTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000051011.14 ENSMUST00000139227.2 |
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| 3UTR CCA 72 bp | GCAATCAGAATCCAGGTCCAGGATAGTGTGGGTGCCTaGGGCCTGGGTGCCTGGTACCAGCTCATACTCTCG | + |
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Preference number: 3 (lower is better) Translates to: AIRIQVQDSVGA*GLGAWYQLILS Trigger: CGAGAGTATGAGCTGGTACCAGGCACCCAGGCCCCAGGCACCCACACTATCCTGGACCTGGATTCTGATTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139227.2 |
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| 3UTR CCA 72 bp | GCAATCTCCTGCCCCCACCAGGGGTATCAGTGTCACTaGAGGTTAGGCTCAGGTCTGGTCAGAGTGAGGTGT | + |
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Preference number: 3 (lower is better) Translates to: AISCPHQGYQCH*RLGSGLVRVRC Trigger: ACACCTCACTCTGACCAGACCTGAGCCTAACCTCCAGTGACACTGATACCCCTGGTGGGGGCAGGAGATTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139227.2 |
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| 3UTR GCA 72 bp | CCTATGGGCTCAGGCCCTATCCACTTAGCAATCTCCTaGCCCCACCAGGGGTATCAGTGTCACTGGAGGTTA | + |
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Preference number: 3 (lower is better) Translates to: PMGSGPIHLAIS*PHQGYQCHWRL Trigger: TAACCTCCAGTGACACTGATACCCCTGGTGGGGGCAGGAGATTGCTAAGTGGATAGGGCCTGAGCCCATAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051011.14 ENSMUST00000139227.2 |
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| 3UTR-3UTR CAA 90 bp | GGAGAATCAGAGGAGGGAGAGTTAGAATGGTCAGTAGCTGGGCCCGAATTCTGGGTAGGTGCTTGTACTTaGTCTTCCACCCCCTCCCCC | + |
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Preference number: 3 (lower is better) Translates to: GESEEGELEWSVAGPEFWVGACT*SSTPSP Trigger: GGGGGAGGGGGTGGAAGACAAAGTACAAGCACCTAC...CCAGAATTCGGGCCCAGCTACTGACCATTCTAACTCTCCCTCCTCTGATTCTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| 3UTR CCA 72 bp | CTCATACTCTCGAAGACTCTGGAGATAACTTGGAGCTaGACTGTGAGCAGGGCTCCGGATATTGGGGGTAAG | + |
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Preference number: 3 (lower is better) Translates to: LILSKTLEITWS*TVSRAPDIGGK Trigger: CTTACCCCCAATATCCGGAGCCCTGCTCACAGTCCAGCTCCAAGTTATCTCCAGAGTCTTCGAGAGTATGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139227.2 |
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| 3UTR CCA 72 bp | TACCAGCTCATACTCTCGAAGACTCTGGAGATAACTTaGAGCTGGACTGTGAGCAGGGCTCCGGATATTGGG | + |
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Preference number: 3 (lower is better) Translates to: YQLILSKTLEIT*SWTVSRAPDIG Trigger: CCCAATATCCGGAGCCCTGCTCACAGTCCAGCTCCAAGTTATCTCCAGAGTCTTCGAGAGTATGAGCTGGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139227.2 |
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| 3UTR-3UTR CAA 90 bp | TGCCTGTCTCTAAAAGGGTTGGTCTGGGCACAGAACCTATTCCCAAGTCTAAGAGTAGGTGCTTGTACTTaGTCTTCCACCCCCTCCCCC | + |
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Preference number: 3 (lower is better) Translates to: CLSLKGLVWAQNLFPSLRVGACT*SSTPSP Trigger: GGGGGAGGGGGTGGAAGACAAAGTACAAGCACCTAC...TCTTAGACTTGGGAATAGGTTCTGTGCCCAGACCAACCCTTTTAGAGACAGGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051011.14 ENSMUST00000139227.2 |
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| 3UTR-3UTR CAA 90 bp | GGAAATCTGTATGGGTCCTATGGGCTCAGGCCCTATCCACTTAGCAATCTCCTGCTGTCTCTAAAAGGGTaGGTCTGGGCACAGAACCTA | + |
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Preference number: 3 (lower is better) Translates to: GNLYGSYGLRPYPLSNLLLSLKG*VWAQNL Trigger: TAGGTTCTGTGCCCAGACCAACCCTTTTAGAGACAG...CAGGAGATTGCTAAGTGGATAGGGCCTGAGCCCATAGGACCCATACAGATTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051011.14 ENSMUST00000139227.2 |
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| 3UTR CCA 72 bp | AAGAATTTTCTCTGCCTGTCTCTAAAAGGGTTGGTCTaGGCACAGAACCTATTCCCAAGTCTAAGAGGTAGG | + |
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Preference number: 3 (lower is better) Translates to: KNFLCLSLKGLV*AQNLFPSLRGR Trigger: CCTACCTCTTAGACTTGGGAATAGGTTCTGTGCCCAGACCAACCCTTTTAGAGACAGGCAGAGAAAATTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051011.14 ENSMUST00000139227.2 |
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| 3UTR CCA 72 bp | TGGGAATGGGTTGTAGTTCAGAACACTTGTCTAATATaGGCAATGCTCTGGGTTCCACCTCAGCATTACAGA | + |
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Preference number: 3 (lower is better) Translates to: WEWVVVQNTCLI*AMLWVPPQHYR Trigger: TCTGTAATGCTGAGGTGGAACCCAGAGCATTGCCCATATTAGACAAGTGTTCTGAACTACAACCCATTCCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| 3UTR CCA 72 bp | GGAGAGTTAGAATGGTCAGTAGCTGGGCCCGAATTCTaGTTTAGGAGGAAAGCTACTTTAAAAGACAGAAGG | + |
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Preference number: 3 (lower is better) Translates to: GELEWSVAGPEF*FRRKATLKDRR Trigger: CCTTCTGTCTTTTAAAGTAGCTTTCCTCCTAAACCAGAATTCGGGCCCAGCTACTGACCATTCTAACTCTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| 3UTR GCA 72 bp | ATTCCTTGTTCTTCCTCCCTCTTATTACAGATCTGCTaGTCAGGGGAAAGATATATTTTCTTTACTATGTCT | + |
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Preference number: 3 (lower is better) Translates to: IPCSSSLLLQIC*SGERYIFFTMS Trigger: AGACATAGTAAAGAAAATATATCTTTCCCCTGAGCAGCAGATCTGTAATAAGAGGGAGGAAGAACAAGGAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| 3UTR GCA 72 bp | CAAATTCCTTGTTCTTCCTCCCTCTTATTACAGATCTaGTGCTCAGGGGAAAGATATATTTTCTTTACTATG | + |
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Preference number: 3 (lower is better) Translates to: QIPCSSSLLLQI*CSGERYIFFTM Trigger: CATAGTAAAGAAAATATATCTTTCCCCTGAGCAGCAGATCTGTAATAAGAGGGAGGAAGAACAAGGAATTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CCA 90 bp | TGTGGTCCTCCTCCACTGAGGAGAGGGGGAAAGCAGCATGGAAGATGGAGCCCCGATAGTGTGGGTGCCTaGGGCCTGGGTGCCTGGTAC | + |
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Preference number: 4 (lower is better) Translates to: CGPPPLRRGGKQHGRWSPDSVGA*GLGAWY Trigger: GTACCAGGCACCCAGGCCCCAGGCACCCACACTATC...GGGGCTCCATCTTCCATGCTGCTTTCCCCCTCTCCTCAGTGGAGGAGGACCACA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CCA 90 bp | TGTGGTCCTCCTCCACTGAGGAGAGGGGGAAAGCAGCATGGAAGATGGAGCCCCAGGTCCAGGATAGTGTaGGTGCCTGGGGCCTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: CGPPPLRRGGKQHGRWSPRSRIV*VPGAWV Trigger: CACCCAGGCCCCAGGCACCCACACTATCCTGGACCT...GGGGCTCCATCTTCCATGCTGCTTTCCCCCTCTCCTCAGTGGAGGAGGACCACA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR GCA 90 bp | GGCTCAGGCCCTATCCACTTAGCAATCTCCTGCCCCCACCAGGGGTATCAGTGTGCCCAGTGCTATGCCTaGGCTCACCTCCAGGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: GSGPIHLAISCPHQGYQCAQCYA*AHLQAQ Trigger: CTGAGCCTGGAGGTGAGCGCAGGCATAGCACTGGGC...ACACTGATACCCCTGGTGGGGGCAGGAGATTGCTAAGTGGATAGGGCCTGAGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CCA 90 bp | TGTGGTCCTCCTCCACTGAGGAGAGGGGGAAAGCAGCATGGAAGATGGAGCCCCGACACATCTCGGGGCTaGGGGCTCTGGGAGTTGTTG | + |
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Preference number: 4 (lower is better) Translates to: CGPPPLRRGGKQHGRWSPDTSRG*GLWELL Trigger: CAACAACTCCCAGAGCCCCCAGCCCCGAGATGTGTC...GGGGCTCCATCTTCCATGCTGCTTTCCCCCTCTCCTCAGTGGAGGAGGACCACA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR GCA 90 bp | CCAGGAAGAAAGGCCAACCAGAAGCCCAATCACCCCCGAGTAAGGAGCCGGGGACGAAGGAGCTGGAGATaGCTTTGCTGGTGGCTCAAG | + |
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Preference number: 4 (lower is better) Translates to: PGRKANQKPNHPRVRSRGRRSWR*LCWWLK Trigger: CTTGAGCCACCAGCAAAGGCATCTCCAGCTCCTTCG...TCCCCGGCTCCTTACTCGGGGGTGATTGGGCTTCTGGTTGGCCTTTCTTCCTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR TCA 90 bp | GGGCACCTCTACTACTGGACAGAGGTAGGTGCTTGTACTTTGTCTTCCACCCCCCTGTGCCCAGGACTGTaGATGGACGTGGCCACCGAA | + |
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Preference number: 4 (lower is better) Translates to: GHLYYWTEVGACTLSSTPLCPGL*MDVATE Trigger: TTCGGTGGCCACGTCCATTCACAGTCCTGGGCACAG...GGGGGTGGAAGACAAAGTACAAGCACCTACCTCTGTCCAGTAGTAGAGGTGCCC 58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CCA 90 bp | TGCTGTGGTCCTCCTCCACTGAGGAGAGGGGGAAAGCAGCATGGAAGATGGAGCGAGAGGAAGCAACTCTaGAAGTGCCTGCAGGCGTTC | + |
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Preference number: 4 (lower is better) Translates to: CCGPPPLRRGGKQHGRWSERKQL*KCLQAF Trigger: GAACGCCTGCAGGCACTTCCAGAGTTGCTTCCTCTC...GCTCCATCTTCCATGCTGCTTTCCCCCTCTCCTCAGTGGAGGAGGACCACAGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CCA 90 bp | GGAAATCTGTATGGGTCCTATGGGCTCAGGCCCTATCCACTTAGCAATCTCCTGTGGGTGCCTGGGGCCTaGGTGCCTGGTACCAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: GNLYGSYGLRPYPLSNLLWVPGA*VPGTSS Trigger: TGAGCTGGTACCAGGCACCCAGGCCCCAGGCACCCA...CAGGAGATTGCTAAGTGGATAGGGCCTGAGCCCATAGGACCCATACAGATTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR GCA 90 bp | CCTATGGGCTCAGGCCCTATCCACTTAGCAATCTCCTGCCCCCACCAGGGGTATCCAGAAGAGTTCCGATaGCTCTTAGCCTCTTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: PMGSGPIHLAISCPHQGYPEEFR*LLASCC Trigger: GCAGCAAGAGGCTAAGAGGCATCGGAACTCTTCTGG...ATACCCCTGGTGGGGGCAGGAGATTGCTAAGTGGATAGGGCCTGAGCCCATAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CCA 90 bp | GGAGAATCAGAGGAGGGAGAGTTAGAATGGTCAGTAGCTGGGCCCGAATTCTGGCGGGGCTGGGGGCTCTaGGAGTTGTTGGTTAAAGGG | + |
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Preference number: 4 (lower is better) Translates to: GESEEGELEWSVAGPEFWRGWGL*ELLVKG Trigger: CCCTTTAACCAACAACTCCCAGAGCCCCCAGCCCCG...CCAGAATTCGGGCCCAGCTACTGACCATTCTAACTCTCCCTCCTCTGATTCTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CCA 90 bp | AATCTGTATGGGTCCTATGGGCTCAGGCCCTATCCACTTAGCAATCTCCTGCCCCGGGGCTGGGGGCTCTaGGAGTTGTTGGTTAAAGGG | + |
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Preference number: 4 (lower is better) Translates to: NLYGSYGLRPYPLSNLLPRGWGL*ELLVKG Trigger: CCCTTTAACCAACAACTCCCAGAGCCCCCAGCCCCG...GGGCAGGAGATTGCTAAGTGGATAGGGCCTGAGCCCATAGGACCCATACAGATT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000051011.14 ENSMUST00000139227.2 |
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| CDS-3UTR CCA 90 bp | AATCTGTATGGGTCCTATGGGCTCAGGCCCTATCCACTTAGCAATCTCCTGCCCGCCCAGGACTGTGAATaGACGTGGCCACCGAAGTGT | + |
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Preference number: 4 (lower is better) Translates to: NLYGSYGLRPYPLSNLLPAQDCE*TWPPKC Trigger: ACACTTCGGTGGCCACGTCCATTCACAGTCCTGGGC...GGGCAGGAGATTGCTAAGTGGATAGGGCCTGAGCCCATAGGACCCATACAGATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CCA 90 bp | GGAGAATCAGAGGAGGGAGAGTTAGAATGGTCAGTAGCTGGGCCCGAATTCTGGGACTGTGAATGGACGTaGCCACCGAAGTGTGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: GESEEGELEWSVAGPEFWDCEWT*PPKCEQ Trigger: CTGCTCACACTTCGGTGGCCACGTCCATTCACAGTC...CCAGAATTCGGGCCCAGCTACTGACCATTCTAACTCTCCCTCCTCTGATTCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CCA 90 bp | GGCTCAGGCCCTATCCACTTAGCAATCTCCTGCCCCCACCAGGGGTATCAGTGTAGATGCCTTTGCTGGTaGCTCAAGATCACATTGGTG | + |
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Preference number: 4 (lower is better) Translates to: GSGPIHLAISCPHQGYQCRCLCW*LKITLV Trigger: CACCAATGTGATCTTGAGCCACCAGCAAAGGCATCT...ACACTGATACCCCTGGTGGGGGCAGGAGATTGCTAAGTGGATAGGGCCTGAGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR TCA 90 bp | CCTGTCTCTAAAAGGGTTGGTCTGGGCACAGAACCTATTCCCAAGTCTAAGAGGGATCACCAGGGCTCCTaGCAGCAGACCCGAGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: PVSKRVGLGTEPIPKSKRDHQGS*QQTREK Trigger: TTTCTCTCGGGTCTGCTGTCAGGAGCCCTGGTGATC...CCTCTTAGACTTGGGAATAGGTTCTGTGCCCAGACCAACCCTTTTAGAGACAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051011.14 ENSMUST00000139227.2 |
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| CDS-3UTR TCA 90 bp | ATACCTCCTTGTTTCAGAGTCAGTGTCTCTAGGGACCAGGGCACCTCTACTACTCAGGTCTGGTCAGAGTaGGGTGTGGTAAGCAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: IPPCFRVSVSRDQGTSTTQVWSE*GVVSRP Trigger: TGGCCTGCTTACCACACCTCACTCTGACCAGACCTG...AGTAGTAGAGGTGCCCTGGTCCCTAGAGACACTGACTCTGAAACAAGGAGGTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CCA 90 bp | GGAGAATCAGAGGAGGGAGAGTTAGAATGGTCAGTAGCTGGGCCCGAATTCTGGAAGTCGAGGCTGTCCTaGGGTTCCAAGACACATCTC | + |
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Preference number: 4 (lower is better) Translates to: GESEEGELEWSVAGPEFWKSRLS*GSKTHL Trigger: GAGATGTGTCTTGGAACCCCAGGACAGCCTCGACTT...CCAGAATTCGGGCCCAGCTACTGACCATTCTAACTCTCCCTCCTCTGATTCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR TCA 90 bp | TTTTGGGAATGGGTTGTAGTTCAGAACACTTGTCTAATATGGGCAATGCTCTGGGACCGGCACCCAGGCTaGATGCGGCTGGTAGATGGG | + |
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Preference number: 4 (lower is better) Translates to: FWEWVVVQNTCLIWAMLWDRHPG*MRLVDG Trigger: CCCATCTACCAGCCGCATTCAGCCTGGGTGCCGGTC...CCAGAGCATTGCCCATATTAGACAAGTGTTCTGAACTACAACCCATTCCCAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR GCA 90 bp | AGCCAGGGCTACACAAAGAAGCCCTGTCTTGAGAGACCAAAACCCCAATCTAACAAGCAACTCTGGAAGTaGCTGCAGGCGTTCACCCAG | + |
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Preference number: 4 (lower is better) Translates to: SQGYTKKPCLERPKPQSNKQLWK*LQAFTQ Trigger: CTGGGTGAACGCCTGCAGGCACTTCCAGAGTTGCTT...GTTAGATTGGGGTTTTGGTCTCTCAAGACAGGGCTTCTTTGTGTAGCCCTGGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CCA 90 bp | TCCTATGGGCTCAGGCCCTATCCACTTAGCAATCTCCTGCCCCCACCAGGGGTATTGGTTAAAGGGCCTTaGGTGAGATGTTATAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: SYGLRPYPLSNLLPPPGVLVKGP*VRCYSQ Trigger: CTGACTATAACATCTCACCCAAGGCCCTTTAACCAA...TACCCCTGGTGGGGGCAGGAGATTGCTAAGTGGATAGGGCCTGAGCCCATAGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051011.14 ENSMUST00000139227.2 |
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| CDS-3UTR TCA 90 bp | AGCCAGGGCTACACAAAGAAGCCCTGTCTTGAGAGACCAAAACCCCAATCTAACGAAACATCACTGCCTTaGAGCAGCGGTAGCCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: SQGYTKKPCLERPKPQSNETSLP*SSGSQS Trigger: GCTTTGGCTACCGCTGCTTCAAGGCAGTGATGTTTC...GTTAGATTGGGGTTTTGGTCTCTCAAGACAGGGCTTCTTTGTGTAGCCCTGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CCA 90 bp | CCTGTCTCTAAAAGGGTTGGTCTGGGCACAGAACCTATTCCCAAGTCTAAGAGGAAGTCGAGGCTGTCCTaGGGTTCCAAGACACATCTC | + |
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Preference number: 4 (lower is better) Translates to: PVSKRVGLGTEPIPKSKRKSRLS*GSKTHL Trigger: GAGATGTGTCTTGGAACCCCAGGACAGCCTCGACTT...CCTCTTAGACTTGGGAATAGGTTCTGTGCCCAGACCAACCCTTTTAGAGACAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051011.14 ENSMUST00000139227.2 |
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| CDS-3UTR TCA 90 bp | TGCCTGTCTCTAAAAGGGTTGGTCTGGGCACAGAACCTATTCCCAAGTCTAAGAGAAACATCACTGCCTTaGAGCAGCGGTAGCCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: CLSLKGLVWAQNLFPSLRETSLP*SSGSQS Trigger: GCTTTGGCTACCGCTGCTTCAAGGCAGTGATGTTTC...TCTTAGACTTGGGAATAGGTTCTGTGCCCAGACCAACCCTTTTAGAGACAGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051011.14 ENSMUST00000139227.2 |
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| CDS-3UTR TCA 90 bp | AAGAATTTTCTCTGCCTGTCTCTAAAAGGGTTGGTCTGGGCACAGAACCTATTCCTTGGAGCTGGACTGTaGGCAGGGCTCCGGATATTG | + |
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Preference number: 4 (lower is better) Translates to: KNFLCLSLKGLVWAQNLFLGAGL*AGLRIL Trigger: CAATATCCGGAGCCCTGCTCACAGTCCAGCTCCAAG...GAATAGGTTCTGTGCCCAGACCAACCCTTTTAGAGACAGGCAGAGAAAATTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CCA 90 bp | TGCCTGTCTCTAAAAGGGTTGGTCTGGGCACAGAACCTATTCCCAAGTCTAAGAAGCACCCGCTCTTTATaGCACAGGAGGAAGATCACC | + |
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Preference number: 4 (lower is better) Translates to: CLSLKGLVWAQNLFPSLRSTRSL*HRRKIT Trigger: GGTGATCTTCCTCCTGTGCCATAAAGAGCGGGTGCT...TCTTAGACTTGGGAATAGGTTCTGTGCCCAGACCAACCCTTTTAGAGACAGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051011.14 ENSMUST00000139227.2 |
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| CDS-3UTR TCA 90 bp | TCCTTGTTCTTCCTCCCTCTTATTACAGATCTGCTGCTCAGGGGAAAGATATATGATCACCAGGGCTCCTaGCAGCAGACCCGAGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: SLFFLPLITDLLLRGKIYDHQGS*QQTREK Trigger: TTTCTCTCGGGTCTGCTGTCAGGAGCCCTGGTGATC...ATATATCTTTCCCCTGAGCAGCAGATCTGTAATAAGAGGGAGGAAGAACAAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR TCA 90 bp | CCAAACAAAACAGGTTTTTGGGAATGGGTTGTAGTTCAGAACACTTGTCTAATATGCGGACCAGCATGGTaGCCAGGCCGCAGAGGAGTC | + |
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Preference number: 4 (lower is better) Translates to: PNKTGFWEWVVVQNTCLICGPAW*PGRRGV Trigger: GACTCCTCTGCGGCCTGGTCACCATGCTGGTCCGCA...TATTAGACAAGTGTTCTGAACTACAACCCATTCCCAAAAACCTGTTTTGTTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR GCA 90 bp | AAACTATTTTGGGCATACCTCCTTGTTTCAGAGTCAGTGTCTCTAGGGACCAGGAGCTGGAGATGCCTTTaGTGGTGGCTCAAGATCACA | + |
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Preference number: 4 (lower is better) Translates to: KLFWAYLLVSESVSLGTRSWRCL*WWLKIT Trigger: TGTGATCTTGAGCCACCAGCAAAGGCATCTCCAGCT...CCTGGTCCCTAGAGACACTGACTCTGAAACAAGGAGGTATGCCCAAAATAGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CCA 90 bp | AAGAATTTTCTCTGCCTGTCTCTAAAAGGGTTGGTCTGGGCACAGAACCTATTCAGCACCCGCTCTTTATaGCACAGGAGGAAGATCACC | + |
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Preference number: 4 (lower is better) Translates to: KNFLCLSLKGLVWAQNLFSTRSL*HRRKIT Trigger: GGTGATCTTCCTCCTGTGCCATAAAGAGCGGGTGCT...GAATAGGTTCTGTGCCCAGACCAACCCTTTTAGAGACAGGCAGAGAAAATTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051011.14 ENSMUST00000139227.2 |
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| CDS-3UTR CCA 90 bp | TTTTGGGAATGGGTTGTAGTTCAGAACACTTGTCTAATATGGGCAATGCTCTGGGAGATAACTTGGAGCTaGACTGTGAGCAGGGCTCCG | + |
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Preference number: 4 (lower is better) Translates to: FWEWVVVQNTCLIWAMLWEITWS*TVSRAP Trigger: CGGAGCCCTGCTCACAGTCCAGCTCCAAGTTATCTC...CCAGAGCATTGCCCATATTAGACAAGTGTTCTGAACTACAACCCATTCCCAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR GCA 90 bp | CCAAACAAAACAGGTTTTTGGGAATGGGTTGTAGTTCAGAACACTTGTCTAATAGAGTCCGATGCCCAGTaGTATGCCTGCGCTCACCTC | + |
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Preference number: 4 (lower is better) Translates to: PNKTGFWEWVVVQNTCLIESDAQ*YACAHL Trigger: GAGGTGAGCGCAGGCATAGCACTGGGCATCGGACTC...TATTAGACAAGTGTTCTGAACTACAACCCATTCCCAAAAACCTGTTTTGTTTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CCA 90 bp | CTAAAAGGGTTGGTCTGGGCACAGAACCTATTCCCAAGTCTAAGAGGTAGGGAATTGGTTAAAGGGCCTTaGGTGAGATGTTATAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: LKGLVWAQNLFPSLRGRELVKGP*VRCYSQ Trigger: CTGACTATAACATCTCACCCAAGGCCCTTTAACCAA...TTCCCTACCTCTTAGACTTGGGAATAGGTTCTGTGCCCAGACCAACCCTTTTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051011.14 ENSMUST00000139227.2 |
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| CDS-3UTR CCA 90 bp | CTTATTACAGATCTGCTGCTCAGGGGAAAGATATATTTTCTTTACTATGTCTGGACTCTGGAGATAACTTaGAGCTGGACTGTGAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LITDLLLRGKIYFLYYVWTLEIT*SWTVSR Trigger: CCTGCTCACAGTCCAGCTCCAAGTTATCTCCAGAGT...CCAGACATAGTAAAGAAAATATATCTTTCCCCTGAGCAGCAGATCTGTAATAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS CCA 90 bp | ATCACATTGGTGCGGCTCCCACGTTCCTCAGCCATGAGTTTCCACTaGGCCAGTGTCCCAAGAGCCCCCAAGACTGGCCAGGTTCCCAGC | + |
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Preference number: 5 (lower is better) Translates to: ITLVRLPRSSAMSFH*ASVPRAPKTGQVPS Trigger: GCTGGGAACCTGGCCAGTCTTGGGGGCTCTTGGGACACTGGCCCAGTGGAAACTCATGGCTGAGGAACGTGGGAGCCGCACCAATGTGAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS CCA 90 bp | CCATCAGTCCGCCGACCGGCACCCAGGCTGAATGCGGCTGGTAGATaGGTTCAGTACCCAATAAGGTTCCAACACCCAGGGTCAGACCTA | + |
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Preference number: 5 (lower is better) Translates to: PSVRRPAPRLNAAGR*VQYPIRFQHPGSDL Trigger: TAGGTCTGACCCTGGGTGTTGGAACCTTATTGGGTACTGAACCCATCTACCAGCCGCATTCAGCCTGGGTGCCGGTCGGCGGACTGATGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CAA 90 bp | CTCAGGCCCTATCCACTTAGCAATCTCCTGCCCCCACCAGGGGTATCAGTGTCAGAGCTGGAGATGCCTTaGCTGGTGGCTCAAGATCAC | + |
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Preference number: 5 (lower is better) Translates to: LRPYPLSNLLPPPGVSVSELEMP*LVAQDH Trigger: GTGATCTTGAGCCACCAGCAAAGGCATCTCCAGCTC...TGACACTGATACCCCTGGTGGGGGCAGGAGATTGCTAAGTGGATAGGGCCTGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CAA 90 bp | TCCTATGGGCTCAGGCCCTATCCACTTAGCAATCTCCTGCCCCCACCAGGGGTAGACTCTGGAGATAACTaGGAGCTGGACTGTGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: SYGLRPYPLSNLLPPPGVDSGDN*ELDCEQ Trigger: CTGCTCACAGTCCAGCTCCAAGTTATCTCCAGAGTC...TACCCCTGGTGGGGGCAGGAGATTGCTAAGTGGATAGGGCCTGAGCCCATAGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CAA 90 bp | GGAGAATCAGAGGAGGGAGAGTTAGAATGGTCAGTAGCTGGGCCCGAATTCTGGGGGCTCTGGGAGTTGTaGGTTAAAGGGCCTTGGGTG | + |
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Preference number: 5 (lower is better) Translates to: GESEEGELEWSVAGPEFWGLWEL*VKGPWV Trigger: CACCCAAGGCCCTTTAACCAACAACTCCCAGAGCCC...CCAGAATTCGGGCCCAGCTACTGACCATTCTAACTCTCCCTCCTCTGATTCTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS-3UTR CAA 90 bp | CCAGCTCATACTCTCGAAGACTCTGGAGATAACTTGGAGCTGGACTGTGAGCAGGGGCTCTGGGAGTTGTaGGTTAAAGGGCCTTGGGTG | + |
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Preference number: 5 (lower is better) Translates to: PAHTLEDSGDNLELDCEQGLWEL*VKGPWV Trigger: CACCCAAGGCCCTTTAACCAACAACTCCCAGAGCCC...CTGCTCACAGTCCAGCTCCAAGTTATCTCCAGAGTCTTCGAGAGTATGAGCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139227.2 |
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| CDS-3UTR CAA 90 bp | GGAAATCTGTATGGGTCCTATGGGCTCAGGCCCTATCCACTTAGCAATCTCCTGTGGGGGCTCTGGGAGTaGTTGGTTAAAGGGCCTTGG | + |
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Preference number: 5 (lower is better) Translates to: GNLYGSYGLRPYPLSNLLWGLWE*LVKGPW Trigger: CCAAGGCCCTTTAACCAACAACTCCCAGAGCCCCCA...CAGGAGATTGCTAAGTGGATAGGGCCTGAGCCCATAGGACCCATACAGATTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000051011.14 ENSMUST00000139227.2 |
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| CDS-3UTR CAA 90 bp | CCTCTTATTACAGATCTGCTGCTCAGGGGAAAGATATATTTTCTTTACTATGTCTGGGGGCTCTGGGAGTaGTTGGTTAAAGGGCCTTGG | + |
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Preference number: 5 (lower is better) Translates to: PLITDLLLRGKIYFLYYVWGLWE*LVKGPW Trigger: CCAAGGCCCTTTAACCAACAACTCCCAGAGCCCCCA...GACATAGTAAAGAAAATATATCTTTCCCCTGAGCAGCAGATCTGTAATAAGAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS CCA 72 bp | GTGCGGCTCCCACGTTCCTCAGCCATGAGTTTCCACTaGGCCAGTGTCCCAAGAGCCCCCAAGACTGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: VRLPRSSAMSFH*ASVPRAPKTGQ Trigger: CTGGCCAGTCTTGGGGGCTCTTGGGACACTGGCCCAGTGGAAACTCATGGCTGAGGAACGTGGGAGCCGCAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS CCA 72 bp | CGCCGACCGGCACCCAGGCTGAATGCGGCTGGTAGATaGGTTCAGTACCCAATAAGGTTCCAACACCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: RRPAPRLNAAGR*VQYPIRFQHPG Trigger: CCCTGGGTGTTGGAACCTTATTGGGTACTGAACCCATCTACCAGCCGCATTCAGCCTGGGTGCCGGTCGGCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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| CDS GCA 72 bp | AAGTGCCTGCAGGCGTTCACCCAGTCTAGTGCCCAGTaGCAGTCCTTCCAGGAAGTAGTCAGCACAGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: KCLQAFTQSSAQ*QSFQEVVSTGH Trigger: GTGGCCTGTGCTGACTACTTCCTGGAAGGACTGGCACTGGGCACTAGACTGGGTGAACGCCTGCAGGCACTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051011.14 |
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