Pregenerated sensors for TMEM185B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000098923Ensembl transcript IDs: ENSMUST00000183952.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTGCACATTATGTACACATCCCACAGTCCTACAGTTTCCCCCTTCTaGCTACGGCACACAATGACCACTGCAAGAGACTTCTGTCTCAGT | + |
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Preference number: 1 (lower is better) Translates to: LHIMYTSHSPTVSPF*LRHTMTTARDFCLS Trigger: ACTGAGACAGAAGTCTCTTGCAGTGGTCATTGTGTGCCGTAGGCAGAAGGGGGAAACTGTAGGACTGTGGGATGTGTACATAATGTGCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR CCA 90 bp | TTCCAAGTATTTATTTCTTCCCAGTCAGACCCTTATTCTGAGGTCTaGCTTTGTCCTCTGGTTCTGATTTCCTGGGGTGACTCTAGCTCC | + |
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Preference number: 1 (lower is better) Translates to: FQVFISSQSDPYSEV*LCPLVLISWGDSSS Trigger: GGAGCTAGAGTCACCCCAGGAAATCAGAACCAGAGGACAAAGCCAGACCTCAGAATAAGGGTCTGACTGGGAAGAAATAAATACTTGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR TCA 90 bp | CTTAGTAAGCTAGTAACCGCTCCACCCCAGTCTTCTCCTCAGCGATaGGCACCCCATGTTTCTTTAACTTCCATTTCCAAGTATTTATTT | + |
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Preference number: 1 (lower is better) Translates to: LSKLVTAPPQSSPQR*APHVSLTSISKYLF Trigger: AAATAAATACTTGGAAATGGAAGTTAAAGAAACATGGGGTGCTCATCGCTGAGGAGAAGACTGGGGTGGAGCGGTTACTAGCTTACTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR-3UTR TCA 90 bp | CTGGCGGGCTATGTTAGCCCTTCTAATACCTCTCCCTGTTGGTCACGCTCAGCCTGGTTCTTATTTCACTaGAAGGCCCAGCCTGTGAGT | + |
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Preference number: 2 (lower is better) Translates to: LAGYVSPSNTSPCWSRSAWFLFH*KAQPVS Trigger: ACTCACAGGCTGGGCCTTTCAGTGAAATAAGAACCA...GGCTGAGCGTGACCAACAGGGAGAGGTATTAGAAGGGCTAACATAGCCCGCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR-3UTR CCA 90 bp | CAGTGTTCATGGCCTGGGGCCGTATTGGAGCATGTCAAATATTCTCTGAGTGCTTGGGAGGGGACAATTTaGTACATTTGCCATTTTGTC | + |
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Preference number: 2 (lower is better) Translates to: QCSWPGAVLEHVKYSLSAWEGTI*YICHFV Trigger: GACAAAATGGCAAATGTACCAAATTGTCCCCTCCCA...AGCACTCAGAGAATATTTGACATGCTCCAATACGGCCCCAGGCCATGAACACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR-3UTR CCA 90 bp | TCTCCAGCACCAGGTTTTCTTTTCCTTCAAATGGAAGAGGACCGTGTCACACCCTGGCCAAACTGTGTGTaGCATATTTTGGTTGTTCCT | + |
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Preference number: 2 (lower is better) Translates to: SPAPGFLFLQMEEDRVTPWPNCV*HILVVP Trigger: AGGAACAACCAAAATATGCCACACACAGTTTGGCCA...GGGTGTGACACGGTCCTCTTCCATTTGAAGGAAAAGAAAACCTGGTGCTGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR-3UTR GCA 90 bp | AAATGTGTAGAACTCTTGTTATCTACCACACCAAACCTTCATCCCAAGACTCGGGCACACAATGACCACTaGAAGAGACTTCTGTCTCAG | + |
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Preference number: 2 (lower is better) Translates to: KCVELLLSTTPNLHPKTRAHNDH*KRLLSQ Trigger: CTGAGACAGAAGTCTCTTGCAGTGGTCATTGTGTGC...CCGAGTCTTGGGATGAAGGTTTGGTGTGGTAGATAACAAGAGTTCTACACATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR-3UTR GCA 90 bp | TGTTACTGGCGGGCTATGTTAGCCCTTCTAATACCTCTCCCTGTTGGTCACGCTACAATTTGGTACATTTaGCATTTTGTCACAATGGGT | + |
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Preference number: 2 (lower is better) Translates to: CYWRAMLALLIPLPVGHATIWYI*HFVTMG Trigger: ACCCATTGTGACAAAATGGCAAATGTACCAAATTGT...AGCGTGACCAACAGGGAGAGGTATTAGAAGGGCTAACATAGCCCGCCAGTAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR-3UTR CCA 90 bp | TCTCTGGGGACACGATCACAAACTTTAAAAATGTGTAGAACTCTTGTTATCTACAGGTTTAGGGAACAGTaGGAGGGGACAATTTGGTAC | + |
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Preference number: 2 (lower is better) Translates to: SLGTRSQTLKMCRTLVIYRFREQ*EGTIWY Trigger: GTACCAAATTGTCCCCTCCCACTGTTCCCTAAACCT...GTAGATAACAAGAGTTCTACACATTTTTAAAGTTTGTGATCGTGTCCCCAGAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR TCA 72 bp | GTCCTACAGTTTCCCCCTTCTGCCTACGGCACACAATaGCCACTGCAAGAGACTTCTGTCTCAGTGTGGATG | + |
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Preference number: 3 (lower is better) Translates to: VLQFPPSAYGTQ*PLQETSVSVWM Trigger: CATCCACACTGAGACAGAAGTCTCTTGCAGTGGTCATTGTGTGCCGTAGGCAGAAGGGGGAAACTGTAGGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR GCA 72 bp | ATGTACACATCCCACAGTCCTACAGTTTCCCCCTTCTaGCTACGGCACACAATGACCACTGCAAGAGACTTC | + |
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Preference number: 3 (lower is better) Translates to: MYTSHSPTVSPF*LRHTMTTARDF Trigger: GAAGTCTCTTGCAGTGGTCATTGTGTGCCGTAGGCAGAAGGGGGAAACTGTAGGACTGTGGGATGTGTACAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR TCA 72 bp | CTAGTAACCGCTCCACCCCAGTCTTCTCCTCAGCGATaGGCACCCCATGTTTCTTTAACTTCCATTTCCAAG | + |
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Preference number: 3 (lower is better) Translates to: LVTAPPQSSPQR*APHVSLTSISK Trigger: CTTGGAAATGGAAGTTAAAGAAACATGGGGTGCTCATCGCTGAGGAGAAGACTGGGGTGGAGCGGTTACTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR TCA 72 bp | ACCCTTATTCTGAGGTCTGGCTTTGTCCTCTGGTTCTaGTTTCCTGGGGTGACTCTAGCTCCTGAAGAAACA | + |
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Preference number: 3 (lower is better) Translates to: TLILRSGFVLWF*FPGVTLAPEET Trigger: TGTTTCTTCAGGAGCTAGAGTCACCCCAGGAAATCAGAACCAGAGGACAAAGCCAGACCTCAGAATAAGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR CCA 72 bp | TTTATTTCTTCCCAGTCAGACCCTTATTCTGAGGTCTaGCTTTGTCCTCTGGTTCTGATTTCCTGGGGTGAC | + |
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Preference number: 3 (lower is better) Translates to: FISSQSDPYSEV*LCPLVLISWGD Trigger: GTCACCCCAGGAAATCAGAACCAGAGGACAAAGCCAGACCTCAGAATAAGGGTCTGACTGGGAAGAAATAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR TCA 72 bp | GACCTGTGTCCGCAAAGCCCACAGAAAACAACTATTTaGACAGTAGGAGCACTAGAAACACCAACAATGAGG | + |
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Preference number: 3 (lower is better) Translates to: DLCPQSPQKTTI*TVGALETPTMR Trigger: CCTCATTGTTGGTGTTTCTAGTGCTCCTACTGTTCAAATAGTTGTTTTCTGTGGGCTTTGCGGACACAGGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR CCA 72 bp | ACACCAAACCTTCATCCCAAGACTCGGACAGGATTCTaGGTCAGGGACATATTAGCATCTCATTCAGTCTTT | + |
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Preference number: 3 (lower is better) Translates to: TPNLHPKTRTGF*VRDILASHSVF Trigger: AAAGACTGAATGAGATGCTAATATGTCCCTGACCCAGAATCCTGTCCGAGTCTTGGGATGAAGGTTTGGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR TCA 72 bp | TCACGCTCAGCCTTCCAACAGAAATGCTTTACATTATaGCAGACCTTAGAAATGGCCAAACTGTGTGTGGCA | + |
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Preference number: 3 (lower is better) Translates to: SRSAFQQKCFTL*QTLEMAKLCVA Trigger: TGCCACACACAGTTTGGCCATTTCTAAGGTCTGTCATAATGTAAAGCATTTCTGTTGGAAGGCTGAGCGTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR CCA 72 bp | ATTTACCACCTTTGGCTAGCTCACAAGATGTGGGCCTaGAAAGCAAGTTCTCTTGCACATTATGTACACATC | + |
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Preference number: 3 (lower is better) Translates to: IYHLWLAHKMWA*KASSLAHYVHI Trigger: GATGTGTACATAATGTGCAAGAGAACTTGCTTTCCAGGCCCACATCTTGTGAGCTAGCCAAAGGTGGTAAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR CCA 72 bp | ACAATGAGGTTTAGGGAACAGTGGGAGGGGACAATTTaGTACATTTGCCATTTTGTCACAATGGGTGCAATC | + |
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Preference number: 3 (lower is better) Translates to: TMRFREQWEGTI*YICHFVTMGAI Trigger: GATTGCACCCATTGTGACAAAATGGCAAATGTACCAAATTGTCCCCTCCCACTGTTCCCTAAACCTCATTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR CCA 72 bp | GCACTAGAAACACCAACAATGAGGTTTAGGGAACAGTaGGAGGGGACAATTTGGTACATTTGCCATTTTGTC | + |
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Preference number: 3 (lower is better) Translates to: ALETPTMRFREQ*EGTIWYICHFV Trigger: GACAAAATGGCAAATGTACCAAATTGTCCCCTCCCACTGTTCCCTAAACCTCATTGTTGGTGTTTCTAGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR CCA 72 bp | AATTCGATTTACCACCTTTGGCTAGCTCACAAGATGTaGGCCTGGAAAGCAAGTTCTCTTGCACATTATGTA | + |
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Preference number: 3 (lower is better) Translates to: NSIYHLWLAHKM*AWKASSLAHYV Trigger: TACATAATGTGCAAGAGAACTTGCTTTCCAGGCCCACATCTTGTGAGCTAGCCAAAGGTGGTAAATCGAATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR-3UTR CAA 90 bp | GGGACACGATCACAAACTTTAAAAATGTGTAGAACTCTTGTTATCTACCACACCGTGGGAGGGGACAATTaGGTACATTTGCCATTTTGT | + |
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Preference number: 3 (lower is better) Translates to: GTRSQTLKMCRTLVIYHTVGGDN*VHLPFC Trigger: ACAAAATGGCAAATGTACCAAATTGTCCCCTCCCAC...GGTGTGGTAGATAACAAGAGTTCTACACATTTTTAAAGTTTGTGATCGTGTCCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR GCA 90 bp | GGACCGTGTCACACCCAGAGCAATGGGGCAGTTAAACACATGGAGCCTGGTGTAGCAGCCAAAAGTGGGTaGCCCTCTCCACCCTGTCGC | + |
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Preference number: 4 (lower is better) Translates to: GPCHTQSNGAVKHMEPGVAAKSG*PSPPCR Trigger: GCGACAGGGTGGAGAGGGGCACCCACTTTTGGCTGC...TACACCAGGCTCCATGTGTTTAACTGCCCCATTGCTCTGGGTGTGACACGGTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR TCA 90 bp | GGATGTAAAATGAGGGGGACCTGTTTCCAATTCCAGGACTGGATGAACACAAGACCGAGGCGCCCACGATaGCCAGGAGCTTCCACAGCC | + |
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Preference number: 4 (lower is better) Translates to: GCKMRGTCFQFQDWMNTRPRRPR*PGASTA Trigger: GGCTGTGGAAGCTCCTGGTCATCGTGGGCGCCTCGG...TCTTGTGTTCATCCAGTCCTGGAATTGGAAACAGGTCCCCCTCATTTTACATCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR CCA 90 bp | TGTTACTGGCGGGCTATGTTAGCCCTTCTAATACCTCTCCCTGTTGGTCACGCTACCAGCAGCCAAAAGTaGGTGCCCCTCTCCACCCTG | + |
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Preference number: 4 (lower is better) Translates to: CYWRAMLALLIPLPVGHATSSQK*VPLSTL Trigger: CAGGGTGGAGAGGGGCACCCACTTTTGGCTGCTGGT...AGCGTGACCAACAGGGAGAGGTATTAGAAGGGCTAACATAGCCCGCCAGTAACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR TCA 90 bp | TTCTCTTGCACATTATGTACACATCCCACAGTCCTACAGTTTCCCCCTTCTGCCAGTAGCTCCACTGGATaGTGCCGTCCAGGCGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: FSCTLCTHPTVLQFPPSASSSTG*CRPGAG Trigger: CCCTGCGCCTGGACGGCATCATCCAGTGGAGCTACT...GGCAGAAGGGGGAAACTGTAGGACTGTGGGATGTGTACATAATGTGCAAGAGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR TCA 90 bp | TGTTACTGGCGGGCTATGTTAGCCCTTCTAATACCTCTCCCTGTTGGTCACGCTGCAGGACCTCAAAAATaGGCAGGGGCACGACAATGG | + |
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Preference number: 4 (lower is better) Translates to: CYWRAMLALLIPLPVGHAAGPQK*AGARQW Trigger: CCATTGTCGTGCCCCTGCTCATTTTTGAGGTCCTGC...AGCGTGACCAACAGGGAGAGGTATTAGAAGGGCTAACATAGCCCGCCAGTAACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR TCA 90 bp | CTGTCTCTCCAGCACCAGGTTTTCTTTTCCTTCAAATGGAAGAGGACCGTGTCAGGAACTTACTGGGGTTaGAGTCCTGGAACAGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: LSLQHQVFFSFKWKRTVSGTYWG*SPGTGP Trigger: GGGGCCTGTTCCAGGACTTCAACCCCAGTAAGTTCC...TGACACGGTCCTCTTCCATTTGAAGGAAAAGAAAACCTGGTGCTGGAGAGACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR GCA 90 bp | TGTTACTGGCGGGCTATGTTAGCCCTTCTAATACCTCTCCCTGTTGGTCACGCTACATGTGTTCTTCGCTaGTCTGCAACCACATCCAGG | + |
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Preference number: 4 (lower is better) Translates to: CYWRAMLALLIPLPVGHATCVLR*SATTSR Trigger: CCTGGATGTGGTTGCAGAGCAGCGAAGAACACATGT...AGCGTGACCAACAGGGAGAGGTATTAGAAGGGCTAACATAGCCCGCCAGTAACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR GCA 90 bp | CACAAGATGTGGGCCTGGAAAGCAAGTTCTCTTGCACATTATGTACACATCCCATGTTCTTCGCTGCTCTaGAACCACATCCAGGGACCG | + |
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Preference number: 4 (lower is better) Translates to: HKMWAWKASSLAHYVHIPCSSLL*NHIQGP Trigger: CGGTCCCTGGATGTGGTTGCAGAGCAGCGAAGAACA...TGGGATGTGTACATAATGTGCAAGAGAACTTGCTTTCCAGGCCCACATCTTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR CCA 90 bp | GGGACACGATCACAAACTTTAAAAATGTGTAGAACTCTTGTTATCTACCACACCCTCTGTACGGTAGCGTaGGTTGCGGGCCCACACGCC | + |
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Preference number: 4 (lower is better) Translates to: GTRSQTLKMCRTLVIYHTLCTVA*VAGPHA Trigger: GGCGTGTGGGCCCGCAACCCACGCTACCGTACAGAG...GGTGTGGTAGATAACAAGAGTTCTACACATTTTTAAAGTTTGTGATCGTGTCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR TCA 90 bp | TCCTACAGTTTCCCCCTTCTGCCTACGGCACACAATGACCACTGCAAGAGACTTACTTCTAGTAGAAACTaGCAGAAATCCCTGCGAATC | + |
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Preference number: 4 (lower is better) Translates to: SYSFPLLPTAHNDHCKRLTSSRN*QKSLRI Trigger: GATTCGCAGGGATTTCTGTCAGTTTCTACTAGAAGT...AAGTCTCTTGCAGTGGTCATTGTGTGCCGTAGGCAGAAGGGGGAAACTGTAGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR TCA 90 bp | CCCACAGAAAACAACTATTTGAACAGTAGGAGCACTAGAAACACCAACAATGAGTACCAGGCAGAGGAATaGCATGAGGATCCACAGGGG | + |
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Preference number: 4 (lower is better) Translates to: PTENNYLNSRSTRNTNNEYQAEE*HEDPQG Trigger: CCCCTGTGGATCCTCATGTCATTCCTCTGCCTGGTA...CTCATTGTTGGTGTTTCTAGTGCTCCTACTGTTCAAATAGTTGTTTTCTGTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR CCA 90 bp | CCCACAGAAAACAACTATTTGAACAGTAGGAGCACTAGAAACACCAACAATGAGACTAGCCACGGCCAGTaGATAATCCTGTCCAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: PTENNYLNSRSTRNTNNETSHGQ*IILSSL Trigger: GAGGCTGGACAGGATTATCCACTGGCCGTGGCTAGT...CTCATTGTTGGTGTTTCTAGTGCTCCTACTGTTCAAATAGTTGTTTTCTGTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR GCA 90 bp | TCTCTGGGGACACGATCACAAACTTTAAAAATGTGTAGAACTCTTGTTATCTACGATGGGGGCGAAGACTaGCCAGTAGCTCCACTGGAT | + |
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Preference number: 4 (lower is better) Translates to: SLGTRSQTLKMCRTLVIYDGGED*PVAPLD Trigger: ATCCAGTGGAGCTACTGGGCAGTCTTCGCCCCCATC...GTAGATAACAAGAGTTCTACACATTTTTAAAGTTTGTGATCGTGTCCCCAGAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| 3UTR CAA 72 bp | AGACCTGTGTCCGCAAAGCCCACAGAAAACAACTATTaGAACAGTAGGAGCACTAGAAACACCAACAATGAG | + |
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Preference number: 4 (lower is better) Translates to: RPVSAKPTENNY*NSRSTRNTNNE Trigger: CTCATTGTTGGTGTTTCTAGTGCTCCTACTGTTCAAATAGTTGTTTTCTGTGGGCTTTGCGGACACAGGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR TCA 90 bp | TCTCTGGGGACACGATCACAAACTTTAAAAATGTGTAGAACTCTTGTTATCTACAGAGCCAAAGCGGGATaGAAATGGAAATGTAAGAGA | + |
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Preference number: 4 (lower is better) Translates to: SLGTRSQTLKMCRTLVIYRAKAG*KWKCKR Trigger: TCTCTTACATTTCCATTTTCATCCCGCTTTGGCTCT...GTAGATAACAAGAGTTCTACACATTTTTAAAGTTTGTGATCGTGTCCCCAGAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS CCA 90 bp | CATGGCTTTGAATTCCACGCAGGCTTCCCCCTCTGTACGGTAGCGTaGGTTGCGGGCCCACACGCCCGCACCCACCGAGGCGCCCACGAT | + |
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Preference number: 5 (lower is better) Translates to: HGFEFHAGFPLCTVA*VAGPHARTHRGAHD Trigger: ATCGTGGGCGCCTCGGTGGGTGCGGGCGTGTGGGCCCGCAACCCACGCTACCGTACAGAGGGGGAAGCCTGCGTGGAATTCAAAGCCATG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS CCA 90 bp | GACATGAGGATCCACAGGGGCACGAACACCACTAGCCACGGCCAGTaGATAATCCTGTCCAGCCTCAGGGCGATGAAGATGAACTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: DMRIHRGTNTTSHGQ*IILSSLRAMKMNCR Trigger: CCTGCAGTTCATCTTCATCGCCCTGAGGCTGGACAGGATTATCCACTGGCCGTGGCTAGTGGTGTTCGTGCCCCTGTGGATCCTCATGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS TCA 90 bp | GGGACCACACGATGTAATAGAGAACTACCAGGCAGAGGAATGACATaGGGATCCACAGGGGCACGAACACCACTAGCCACGGCCAGTGGA | + |
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Preference number: 5 (lower is better) Translates to: GTTRCNRELPGRGMT*GSTGARTPLATASG Trigger: TCCACTGGCCGTGGCTAGTGGTGTTCGTGCCCCTGTGGATCCTCATGTCATTCCTCTGCCTGGTAGTTCTCTATTACATCGTGTGGTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR CAA 90 bp | TCCTACAGTTTCCCCCTTCTGCCTACGGCACACAATGACCACTGCAAGAGACTTAGGAACTTACTGGGGTaGAAGTCCTGGAACAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: SYSFPLLPTAHNDHCKRLRNLLG*KSWNRP Trigger: GGGCCTGTTCCAGGACTTCAACCCCAGTAAGTTCCT...AAGTCTCTTGCAGTGGTCATTGTGTGCCGTAGGCAGAAGGGGGAAACTGTAGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS CCA 90 bp | TCCACCCTGTCGCAGACTAGTATCTCAAACATGAGTAGTAGCAGGTaGATGCCCACGGCGATAAGCATGGCTTTGAATTCCACGCAGGCT | + |
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Preference number: 5 (lower is better) Translates to: STLSQTSISNMSSSR*MPTAISMALNSTQA Trigger: AGCCTGCGTGGAATTCAAAGCCATGCTTATCGCCGTGGGCATCCACCTGCTACTACTCATGTTTGAGATACTAGTCTGCGACAGGGTGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR CAA 90 bp | TACCACCTTTGGCTAGCTCACAAGATGTGGGCCTGGAAAGCAAGTTCTCTTGCAATGAACTGCAGGATGTaGACAGAGCACAGGATCTCC | + |
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Preference number: 5 (lower is better) Translates to: YHLWLAHKMWAWKASSLAMNCRM*TEHRIS Trigger: GGAGATCCTGTGCTCTGTCAACATCCTGCAGTTCAT...TGCAAGAGAACTTGCTTTCCAGGCCCACATCTTGTGAGCTAGCCAAAGGTGGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS-3UTR CAA 90 bp | TCTCTGGGGACACGATCACAAACTTTAAAAATGTGTAGAACTCTTGTTATCTACATATCAATGTTTAACTaGGGAGGTGGAGGCACATAT | + |
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Preference number: 5 (lower is better) Translates to: SLGTRSQTLKMCRTLVIYISMFN*GGGGTY Trigger: ATATGTGCCTCCACCTCCCAAGTTAAACATTGATAT...GTAGATAACAAGAGTTCTACACATTTTTAAAGTTTGTGATCGTGTCCCCAGAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS CCA 72 bp | GAATTCCACGCAGGCTTCCCCCTCTGTACGGTAGCGTaGGTTGCGGGCCCACACGCCCGCACCCACCGAGGC | + |
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Preference number: 6 (lower is better) Translates to: EFHAGFPLCTVA*VAGPHARTHRG Trigger: GCCTCGGTGGGTGCGGGCGTGTGGGCCCGCAACCCACGCTACCGTACAGAGGGGGAAGCCTGCGTGGAATTC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS CCA 72 bp | ATCCACAGGGGCACGAACACCACTAGCCACGGCCAGTaGATAATCCTGTCCAGCCTCAGGGCGATGAAGATG | + |
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Preference number: 6 (lower is better) Translates to: IHRGTNTTSHGQ*IILSSLRAMKM Trigger: CATCTTCATCGCCCTGAGGCTGGACAGGATTATCCACTGGCCGTGGCTAGTGGTGTTCGTGCCCCTGTGGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS TCA 72 bp | CGATGTAATAGAGAACTACCAGGCAGAGGAATGACATaGGGATCCACAGGGGCACGAACACCACTAGCCACG | + |
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Preference number: 6 (lower is better) Translates to: RCNRELPGRGMT*GSTGARTPLAT Trigger: CGTGGCTAGTGGTGTTCGTGCCCCTGTGGATCCTCATGTCATTCCTCTGCCTGGTAGTTCTCTATTACATCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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| CDS CCA 72 bp | TCGCAGACTAGTATCTCAAACATGAGTAGTAGCAGGTaGATGCCCACGGCGATAAGCATGGCTTTGAATTCC | + |
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Preference number: 6 (lower is better) Translates to: SQTSISNMSSSR*MPTAISMALNS Trigger: GGAATTCAAAGCCATGCTTATCGCCGTGGGCATCCACCTGCTACTACTCATGTTTGAGATACTAGTCTGCGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183952.2 |
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