Pregenerated sensors for TMEM183A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042305Ensembl transcript IDs: ENSMUST00000049470.11, ENSMUST00000191237.7
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAAGGGGTGGGTCGTCCGCCGTGCCAGCTGTCCTGCCTTCAGACATaGCCTGTACGTCCTGCTGCTCCATCAAAAATAATGGGCTTGGCT | + |
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Preference number: 1 (lower is better) Translates to: QGVGRPPCQLSCLQT*PVRPAAPSKIMGLA Trigger: AGCCAAGCCCATTATTTTTGATGGAGCAGCAGGACGTACAGGGCATGTCTGAAGGCAGGACAGCTGGCACGGCGGACGACCCACCCCTTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000191237.7 |
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| 3UTR TCA 90 bp | GGCAGGGAGGCTGGACTGCAGCGCTACAGGATGAACTCCAGGTCTTaGGTAGGAGAGCATTGTCTTAATGAGCATCTCCTGCCACATCCA | + |
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Preference number: 1 (lower is better) Translates to: GREAGLQRYRMNSRS*VGEHCLNEHLLPHP Trigger: TGGATGTGGCAGGAGATGCTCATTAAGACAATGCTCTCCTACTCAAGACCTGGAGTTCATCCTGTAGCGCTGCAGTCCAGCCTCCCTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR GCA 90 bp | CTTTTTATTGACCCAGGCTCACTATCTGTTCAACCAGTGACAGCATaGCCCTCAGTGTGGGTACGGCTGCTGTCAGCAGCAGCATTAAAC | + |
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Preference number: 1 (lower is better) Translates to: LFIDPGSLSVQPVTA*PSVWVRLLSAAALN Trigger: GTTTAATGCTGCTGCTGACAGCAGCCGTACCCACACTGAGGGGCATGCTGTCACTGGTTGAACAGATAGTGAGCCTGGGTCAATAAAAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR GCA 90 bp | GTAAACCTAAATGGGAGACACACAATCCACAAGGACAACTTCCCCTaGTCCATGGCATCTTTTGTTCAGGGAACTCCAGACTCTGTGCTT | + |
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Preference number: 1 (lower is better) Translates to: VNLNGRHTIHKDNFP*SMASFVQGTPDSVL Trigger: AAGCACAGAGTCTGGAGTTCCCTGAACAAAAGATGCCATGGAGCAGGGGAAGTTGTCCTTGTGGATTGTGTGTCTCCCATTTAGGTTTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR TCA 90 bp | TCCTGGCTCTGCATGGACCAGCAGTTCTGGCCTTGGGTAAATCAATaGTTCAGCTTCTCAACCTTAAAATGGGAAGGGTTTCAACTACCT | + |
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Preference number: 1 (lower is better) Translates to: SWLCMDQQFWPWVNQ*FSFSTLKWEGFQLP Trigger: AGGTAGTTGAAACCCTTCCCATTTTAAGGTTGAGAAGCTGAATCATTGATTTACCCAAGGCCAGAACTGCTGGTCCATGCAGAGCCAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR-3UTR GCA 90 bp | GGGTCGTCCGCCGTGCCAGCTGTCCTGCCTTCAGACATGCCCTGTACGTCCTGCGGAAAACACTTCTGCTaGCATCACAACGGCTCCAGT | + |
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Preference number: 2 (lower is better) Translates to: GSSAVPAVLPSDMPCTSCGKHFC*HHNGSS Trigger: ACTGGAGCCGTTGTGATGGCAGCAGAAGTGTTTTCC...GCAGGACGTACAGGGCATGTCTGAAGGCAGGACAGCTGGCACGGCGGACGACCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191237.7 |
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| 3UTR-3UTR GCA 90 bp | CTCCCAGGGGACAAGGGGTGGGTCGTCCGCCGTGCCAGCTGTCCTGCCTTCAGACCCTGTACGTCCTGCTaGTCCATCAAAAATAATGGG | + |
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Preference number: 2 (lower is better) Translates to: LPGDKGWVVRRASCPAFRPCTSC*SIKNNG Trigger: CCCATTATTTTTGATGGAGCAGCAGGACGTACAGGG...TCTGAAGGCAGGACAGCTGGCACGGCGGACGACCCACCCCTTGTCCCCTGGGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000191237.7 |
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| 3UTR-3UTR CCA 90 bp | TCCCAGGGGACAAGGGGTGGGTCGTCCGCCGTGCCAGCTGTCCTGCCTTCAGACACTAATGGACTAGACTaGAAGCTATCCCGAGGGACA | + |
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Preference number: 2 (lower is better) Translates to: SQGTRGGSSAVPAVLPSDTNGLD*KLSRGT Trigger: TGTCCCTCGGGATAGCTTCCAGTCTAGTCCATTAGT...GTCTGAAGGCAGGACAGCTGGCACGGCGGACGACCCACCCCTTGTCCCCTGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000191237.7 |
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| 3UTR-3UTR GCA 90 bp | GGGTCGTCCGCCGTGCCAGCTGTCCTGCCTTCAGACATGCCCTGTACGTCCTGCGCTACACAATACAGCTaGCCCTTCCAAACAGAATCT | + |
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Preference number: 2 (lower is better) Translates to: GSSAVPAVLPSDMPCTSCATQYS*PFQTES Trigger: AGATTCTGTTTGGAAGGGGCAGCTGTATTGTGTAGC...GCAGGACGTACAGGGCATGTCTGAAGGCAGGACAGCTGGCACGGCGGACGACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000191237.7 |
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| 3UTR-3UTR GCA 90 bp | TGTAACAGGAGCCCCAGGAACCCAAACAGCCTGTGCATCACTAATCAGCTACACGTGGGTCGTCCGCCGTaGCAGCTGTCCTGCCTTCAG | + |
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Preference number: 2 (lower is better) Translates to: CNRSPRNPNSLCITNQLHVGRPP*QLSCLQ Trigger: CTGAAGGCAGGACAGCTGGCACGGCGGACGACCCAC...GTGTAGCTGATTAGTGATGCACAGGCTGTTTGGGTTCCTGGGGCTCCTGTTACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191237.7 |
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| 3UTR-3UTR CCA 90 bp | ACACAGCAAGACCCTGTCTCCAAAGGACTATTTTTGTGGGGCAGGGAGGCTGGAGAGGAGCAGCAACATTaGAGCAACCATTTTAAGCCT | + |
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Preference number: 2 (lower is better) Translates to: TQQDPVSKGLFLWGREAGEEQQH*SNHFKP Trigger: AGGCTTAAAATGGTTGCTCCAATGTTGCTGCTCCTC...TCCAGCCTCCCTGCCCCACAAAAATAGTCCTTTGGAGACAGGGTCTTGCTGTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR CAA 90 bp | ACAGGGGTCAGAATCCTGGCTCTGCATGGACCAGCAGTTCTGGCCTaGGGTAAATCAATGATTCAGCTTCTCAACCTTAAAATGGGAAGG | + |
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Preference number: 2 (lower is better) Translates to: TGVRILALHGPAVLA*GKSMIQLLNLKMGR Trigger: CCTTCCCATTTTAAGGTTGAGAAGCTGAATCATTGATTTACCCAAGGCCAGAACTGCTGGTCCATGCAGAGCCAGGATTCTGACCCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR CAA 90 bp | GACACACAATCCACAAGGACAACTTCCCCTGCTCCATGGCATCTTTaGTTCAGGGAACTCCAGACTCTGTGCTTCTTTTCTTCTGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: DTQSTRTTSPAPWHL*FRELQTLCFFSSAS Trigger: AGAGGCAGAAGAAAAGAAGCACAGAGTCTGGAGTTCCCTGAACAAAAGATGCCATGGAGCAGGGGAAGTTGTCCTTGTGGATTGTGTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR-3UTR TCA 90 bp | TGTTGTGTAGCAAAAGACAGGGGTCAGAATCCTGGCTCTGCATGGACCAGCAGTACCATTTTAAGCCTCTaGGTTCCTCTAATCTGTAAG | + |
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Preference number: 2 (lower is better) Translates to: CCVAKDRGQNPGSAWTSSTILSL*VPLICK Trigger: CTTACAGATTAGAGGAACTCAGAGGCTTAAAATGGT...ACTGCTGGTCCATGCAGAGCCAGGATTCTGACCCCTGTCTTTTGCTACACAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR-3UTR GCA 90 bp | CTGCCACATCCAGGTGGGAAAGGAAGCAGTAAGACTTTCTTCTTAGCAAAAGAAAACCCAAACAGCCTGTaGATCACTAATCAGCTACAC | + |
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Preference number: 2 (lower is better) Translates to: LPHPGGKGSSKTFFLAKENPNSL*ITNQLH Trigger: GTGTAGCTGATTAGTGATGCACAGGCTGTTTGGGTT...TTCTTTTGCTAAGAAGAAAGTCTTACTGCTTCCTTTCCCACCTGGATGTGGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR-3UTR CCA 90 bp | CTGCAGAGATCTGTGGAGGCTTACTGTCCTAGGGTTTTTGTTTGCTTTGTTAATACTAATGGACTAGACTaGAAGCTATCCCGAGGGACA | + |
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Preference number: 2 (lower is better) Translates to: LQRSVEAYCPRVFVCFVNTNGLD*KLSRGT Trigger: TGTCCCTCGGGATAGCTTCCAGTCTAGTCCATTAGT...ATTAACAAAGCAAACAAAAACCCTAGGACAGTAAGCCTCCACAGATCTCTGCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR-3UTR GCA 90 bp | CTGCAGAGATCTGTGGAGGCTTACTGTCCTAGGGTTTTTGTTTGCTTTGTTAATGCTACACAATACAGCTaGCCCTTCCAAACAGAATCT | + |
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Preference number: 2 (lower is better) Translates to: LQRSVEAYCPRVFVCFVNATQYS*PFQTES Trigger: AGATTCTGTTTGGAAGGGGCAGCTGTATTGTGTAGC...ATTAACAAAGCAAACAAAAACCCTAGGACAGTAAGCCTCCACAGATCTCTGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR-3UTR TCA 90 bp | GTTCCTCTAATCTGTAAGGAAAAACGTTCTTCCATGAAGAGTAAGAGTTTAACTAGTTGGTTTTCCTCTTaGTTCAACCTTTCCACCTCC | + |
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Preference number: 2 (lower is better) Translates to: VPLICKEKRSSMKSKSLTSWFSS*FNLSTS Trigger: GGAGGTGGAAAGGTTGAATCAAGAGGAAAACCAACT...AGTTAAACTCTTACTCTTCATGGAAGAACGTTTTTCCTTACAGATTAGAGGAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR GCA 72 bp | GGACAAGGGGTGGGTCGTCCGCCGTGCCAGCTGTCCTaGCTTCAGACATGCCCTGTACGTCCTGCTGCTCCA | + |
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Preference number: 3 (lower is better) Translates to: GQGVGRPPCQLS*LQTCPVRPAAP Trigger: TGGAGCAGCAGGACGTACAGGGCATGTCTGAAGGCAGGACAGCTGGCACGGCGGACGACCCACCCCTTGTCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191237.7 |
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| 3UTR GCA 72 bp | AGCACTCCCAGGGGACAAGGGGTGGGTCGTCCGCCGTaGCAGCTGTCCTGCCTTCAGACATGCCCTGTACGT | + |
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Preference number: 3 (lower is better) Translates to: STPRGQGVGRPP*QLSCLQTCPVR Trigger: ACGTACAGGGCATGTCTGAAGGCAGGACAGCTGGCACGGCGGACGACCCACCCCTTGTCCCCTGGGAGTGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000191237.7 |
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| 3UTR GCA 72 bp | GACCCAGGCTCACTATCTGTTCAACCAGTGACAGCATaGCCCTCAGTGTGGGTACGGCTGCTGTCAGCAGCA | + |
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Preference number: 3 (lower is better) Translates to: DPGSLSVQPVTA*PSVWVRLLSAA Trigger: TGCTGCTGACAGCAGCCGTACCCACACTGAGGGGCATGCTGTCACTGGTTGAACAGATAGTGAGCCTGGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR GCA 72 bp | GGTCGTCCGCCGTGCCAGCTGTCCTGCCTTCAGACATaGCCTGTACGTCCTGCTGCTCCATCAAAAATAATG | + |
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Preference number: 3 (lower is better) Translates to: GRPPCQLSCLQT*PVRPAAPSKIM Trigger: CATTATTTTTGATGGAGCAGCAGGACGTACAGGGCATGTCTGAAGGCAGGACAGCTGGCACGGCGGACGACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000191237.7 |
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| 3UTR CCA 72 bp | ACACAGCAAGACCCTGTCTCCAAAGGACTATTTTTGTaGGGCAGGGAGGCTGGACTGCAGCGCTACAGGATG | + |
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Preference number: 3 (lower is better) Translates to: TQQDPVSKGLFL*GREAGLQRYRM Trigger: CATCCTGTAGCGCTGCAGTCCAGCCTCCCTGCCCCACAAAAATAGTCCTTTGGAGACAGGGTCTTGCTGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR CCA 72 bp | TGTCTCCAAAGGACTATTTTTGTGGGGCAGGGAGGCTaGACTGCAGCGCTACAGGATGAACTCCAGGTCTTG | + |
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Preference number: 3 (lower is better) Translates to: CLQRTIFVGQGG*TAALQDELQVL Trigger: CAAGACCTGGAGTTCATCCTGTAGCGCTGCAGTCCAGCCTCCCTGCCCCACAAAAATAGTCCTTTGGAGACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR GCA 72 bp | TCCTGTAACAGGAGCCCCAGGAACCCAAACAGCCTGTaGATCACTAATCAGCTACACAATACAGCTGCCCCT | + |
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Preference number: 3 (lower is better) Translates to: SCNRSPRNPNSL*ITNQLHNTAAP Trigger: AGGGGCAGCTGTATTGTGTAGCTGATTAGTGATGCACAGGCTGTTTGGGTTCCTGGGGCTCCTGTTACAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049470.11 ENSMUST00000191237.7 |
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| 3UTR TCA 72 bp | CTCTGTGCTTCTTTTCTTCTGCCTCTAGGCAGCTTCTaGCTGCAGAGATCTGTGGAGGCTTACTGTCCTAGG | + |
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Preference number: 3 (lower is better) Translates to: LCASFLLPLGSF*LQRSVEAYCPR Trigger: CCTAGGACAGTAAGCCTCCACAGATCTCTGCAGTCAGAAGCTGCCTAGAGGCAGAAGAAAAGAAGCACAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR GCA 72 bp | AATGGGAGACACACAATCCACAAGGACAACTTCCCCTaGTCCATGGCATCTTTTGTTCAGGGAACTCCAGAC | + |
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Preference number: 3 (lower is better) Translates to: NGRHTIHKDNFP*SMASFVQGTPD Trigger: GTCTGGAGTTCCCTGAACAAAAGATGCCATGGAGCAGGGGAAGTTGTCCTTGTGGATTGTGTGTCTCCCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR CCA 72 bp | GCCACATTTATTTCACCCACTCAGGGTAAACCTAAATaGGAGACACACAATCCACAAGGACAACTTCCCCTG | + |
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Preference number: 3 (lower is better) Translates to: ATFISPTQGKPK*ETHNPQGQLPL Trigger: CAGGGGAAGTTGTCCTTGTGGATTGTGTGTCTCCCATTTAGGTTTACCCTGAGTGGGTGAAATAAATGTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR TCA 72 bp | TGCATGGACCAGCAGTTCTGGCCTTGGGTAAATCAATaGTTCAGCTTCTCAACCTTAAAATGGGAAGGGTTT | + |
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Preference number: 3 (lower is better) Translates to: CMDQQFWPWVNQ*FSFSTLKWEGF Trigger: AAACCCTTCCCATTTTAAGGTTGAGAAGCTGAATCATTGATTTACCCAAGGCCAGAACTGCTGGTCCATGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR TCA 72 bp | AGGAGCAGCAACATTGGAGCAACCATTTTAAGCCTCTaGGTTCCTCTAATCTGTAAGGAAAAACGTTCTTCC | + |
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Preference number: 3 (lower is better) Translates to: RSSNIGATILSL*VPLICKEKRSS Trigger: GGAAGAACGTTTTTCCTTACAGATTAGAGGAACTCAGAGGCTTAAAATGGTTGCTCCAATGTTGCTGCTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR-3UTR CAA 90 bp | TCTCTGTATGAAGACCAGGATCCTGAATGCACACAGGATGATTTAAAAAGGAAACCAGCAGTTCTGGCCTaGGGTAAATCAATGATTCAG | + |
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Preference number: 3 (lower is better) Translates to: SLYEDQDPECTQDDLKRKPAVLA*GKSMIQ Trigger: CTGAATCATTGATTTACCCAAGGCCAGAACTGCTGG...TTTCCTTTTTAAATCATCCTGTGTGCATTCAGGATCCTGGTCTTCATACAGAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR TCA 72 bp | TTAATTAAGTACCCAAATTCTGGTGGTTCTTTTTATTaGCCCAGGCTCACTATCTGTTCAACCAGTGACAGC | + |
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Preference number: 3 (lower is better) Translates to: LIKYPNSGGSFY*PRLTICSTSDS Trigger: GCTGTCACTGGTTGAACAGATAGTGAGCCTGGGTCAATAAAAAGAACCACCAGAATTTGGGTACTTAATTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| CDS-3UTR TCA 90 bp | GGGACAAGGGGTGGGTCGTCCGCCGTGCCAGCTGTCCTGCCTTCAGACATGCCCCTCTCTTGGGCATGGTaGCGGTGTCCCGATGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: GTRGGSSAVPAVLPSDMPLSWAW*RCPDEA Trigger: GGCCTCATCGGGACACCGTCACCATGCCCAAGAGAG...GGGCATGTCTGAAGGCAGGACAGCTGGCACGGCGGACGACCCACCCCTTGTCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000191237.7 |
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| CDS-3UTR CCA 90 bp | GGGTCGTCCGCCGTGCCAGCTGTCCTGCCTTCAGACATGCCCTGTACGTCCTGCGTCCAGGATGTCACATaGCTCACCCACCCCGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: GSSAVPAVLPSDMPCTSCVQDVT*LTHPGK Trigger: CTTTCCGGGGTGGGTGAGCCATGTGACATCCTGGAC...GCAGGACGTACAGGGCATGTCTGAAGGCAGGACAGCTGGCACGGCGGACGACCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191237.7 |
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| CDS-3UTR TCA 90 bp | CTCCCAGGGGACAAGGGGTGGGTCGTCCGCCGTGCCAGCTGTCCTGCCTTCAGAGAGACTGATCTTTCCTaGGTGCTTTCTTCCTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: LPGDKGWVVRRASCPAFRETDLS*VLSSWA Trigger: TGCCCAGGAAGAAAGCACTCAGGAAAGATCAGTCTC...TCTGAAGGCAGGACAGCTGGCACGGCGGACGACCCACCCCTTGTCCCCTGGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000191237.7 |
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| CDS-3UTR GCA 90 bp | GGGACAAGGGGTGGGTCGTCCGCCGTGCCAGCTGTCCTGCCTTCAGACATGCCCCTGATCTTTCCTGAGTaGTTTCTTCCTGGGCATCCA | + |
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Preference number: 4 (lower is better) Translates to: GTRGGSSAVPAVLPSDMPLIFPE*FLPGHP Trigger: TGGATGCCCAGGAAGAAAGCACTCAGGAAAGATCAG...GGGCATGTCTGAAGGCAGGACAGCTGGCACGGCGGACGACCCACCCCTTGTCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000191237.7 |
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| CDS-3UTR CCA 90 bp | CTCCCAGGGGACAAGGGGTGGGTCGTCCGCCGTGCCAGCTGTCCTGCCTTCAGAAATTCTTCAGTGTGCTaGGAGTGCTTTCCGGAATGG | + |
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Preference number: 4 (lower is better) Translates to: LPGDKGWVVRRASCPAFRNSSVC*ECFPEW Trigger: CCATTCCGGAAAGCACTCCCAGCACACTGAAGAATT...TCTGAAGGCAGGACAGCTGGCACGGCGGACGACCCACCCCTTGTCCCCTGGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000191237.7 |
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| CDS-3UTR TCA 90 bp | ACACAGCAAGACCCTGTCTCCAAAGGACTATTTTTGTGGGGCAGGGAGGCTGGAGAGACTGATCTTTCCTaGGTGCTTTCTTCCTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: TQQDPVSKGLFLWGREAGETDLS*VLSSWA Trigger: TGCCCAGGAAGAAAGCACTCAGGAAAGATCAGTCTC...TCCAGCCTCCCTGCCCCACAAAAATAGTCCTTTGGAGACAGGGTCTTGCTGTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| CDS-3UTR CCA 90 bp | TGTAACAGGAGCCCCAGGAACCCAAACAGCCTGTGCATCACTAATCAGCTACACAATTCTTCAGTGTGCTaGGAGTGCTTTCCGGAATGG | + |
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Preference number: 4 (lower is better) Translates to: CNRSPRNPNSLCITNQLHNSSVC*ECFPEW Trigger: CCATTCCGGAAAGCACTCCCAGCACACTGAAGAATT...GTGTAGCTGATTAGTGATGCACAGGCTGTTTGGGTTCCTGGGGCTCCTGTTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049470.11 ENSMUST00000191237.7 |
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| 3UTR CAA 72 bp | TCCACAAGGACAACTTCCCCTGCTCCATGGCATCTTTaGTTCAGGGAACTCCAGACTCTGTGCTTCTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: STRTTSPAPWHL*FRELQTLCFFS Trigger: AGAAAAGAAGCACAGAGTCTGGAGTTCCCTGAACAAAAGATGCCATGGAGCAGGGGAAGTTGTCCTTGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| CDS-3UTR CCA 90 bp | CTCATTGTTTTACTTTTTCCTCACACTCTGCCTCCTCTTTGTACCACTAAGTACGTCCAGGATGTCACATaGCTCACCCACCCCGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: LIVLLFPHTLPPLCTTKYVQDVT*LTHPGK Trigger: CTTTCCGGGGTGGGTGAGCCATGTGACATCCTGGAC...GTACTTAGTGGTACAAAGAGGAGGCAGAGTGTGAGGAAAAAGTAAAACAATGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| CDS-3UTR TCA 90 bp | GTTCCTCTAATCTGTAAGGAAAAACGTTCTTCCATGAAGAGTAAGAGTTTAACTCTCTCTTGGGCATGGTaGCGGTGTCCCGATGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: VPLICKEKRSSMKSKSLTLSWAW*RCPDEA Trigger: GGCCTCATCGGGACACCGTCACCATGCCCAAGAGAG...AGTTAAACTCTTACTCTTCATGGAAGAACGTTTTTCCTTACAGATTAGAGGAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| CDS-3UTR CCA 90 bp | CTGCCACATCCAGGTGGGAAAGGAAGCAGTAAGACTTTCTTCTTAGCAAAAGAACGGACAGGAGAATCCTaGAACACCAATCTCACTCGA | + |
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Preference number: 4 (lower is better) Translates to: LPHPGGKGSSKTFFLAKERTGES*NTNLTR Trigger: TCGAGTGAGATTGGTGTTCCAGGATTCTCCTGTCCG...TTCTTTTGCTAAGAAGAAAGTCTTACTGCTTCCTTTCCCACCTGGATGTGGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR CAA 72 bp | AGAATCCTGGCTCTGCATGGACCAGCAGTTCTGGCCTaGGGTAAATCAATGATTCAGCTTCTCAACCTTAAA | + |
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Preference number: 4 (lower is better) Translates to: RILALHGPAVLA*GKSMIQLLNLK Trigger: TTTAAGGTTGAGAAGCTGAATCATTGATTTACCCAAGGCCAGAACTGCTGGTCCATGCAGAGCCAGGATTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| CDS-3UTR GCA 90 bp | TCTCTGTATGAAGACCAGGATCCTGAATGCACACAGGATGATTTAAAAAGGAAACTGATCTTTCCTGAGTaGTTTCTTCCTGGGCATCCA | + |
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Preference number: 4 (lower is better) Translates to: SLYEDQDPECTQDDLKRKLIFPE*FLPGHP Trigger: TGGATGCCCAGGAAGAAAGCACTCAGGAAAGATCAG...TTTCCTTTTTAAATCATCCTGTGTGCATTCAGGATCCTGGTCTTCATACAGAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR CAA 72 bp | TGCAGAGATCTGTGGAGGCTTACTGTCCTAGGGTTTTaGTTTGCTTTGTTAATTAAGTACCCAAATTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: CRDLWRLTVLGF*FALLIKYPNSG Trigger: ACCAGAATTTGGGTACTTAATTAACAAAGCAAACAAAAACCCTAGGACAGTAAGCCTCCACAGATCTCTGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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| 3UTR CAA 72 bp | CTGTGGAGGCTTACTGTCCTAGGGTTTTTGTTTGCTTaGTTAATTAAGTACCCAAATTCTGGTGGTTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: LWRLTVLGFLFA*LIKYPNSGGSF Trigger: AAAAGAACCACCAGAATTTGGGTACTTAATTAACAAAGCAAACAAAAACCCTAGGACAGTAAGCCTCCACAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049470.11 |
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