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Pregenerated sensors for TMEM18 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043061

Ensembl transcript IDs: ENSMUST00000057151.10

Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCATATGCCAGAACGCGGACATCGCAGCCGCTCTCTGCCCCATTCTaGCCCACTGGCCTCAGACACAAAGGCCTGAAGGGAACACATCTA +
Preference number: 1 (lower is better)
Translates to: AYARTRTSQPLSAPF*PTGLRHKGLKGTHL
Trigger: TAGATGTGTTCCCTTCAGGCCTTTGTGTCTGAGGCCAGTGGGGCAGAATGGGGCAGAGAGCGGCTGCGATGTCCGCGTTCTGGCATATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR TCA 90 bp GACAATACACCCTGCTGTGTTCGCCAGCCCCCAACCGCACAAATGTaGCACTTGGGAAGAACTGTCTGCACTTGTCACAGTCTGGGTAGA +
Preference number: 1 (lower is better)
Translates to: DNTPCCVRQPPTAQM*HLGRTVCTCHSLGR
Trigger: TCTACCCAGACTGTGACAAGTGCAGACAGTTCTTCCCAAGTGTCACATTTGTGCGGTTGGGGGCTGGCGAACACAGCAGGGTGTATTGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR TCA 90 bp GGATTCCATGGAAACCAAGGGTGTCTGACAAAACAGAGGCACAGGTaGCAATACACCCTGCTGTGTTCGCCAGCCCCCAACCGCACAAAT +
Preference number: 1 (lower is better)
Translates to: GFHGNQGCLTKQRHR*QYTLLCSPAPNRTN
Trigger: ATTTGTGCGGTTGGGGGCTGGCGAACACAGCAGGGTGTATTGTCACCTGTGCCTCTGTTTTGTCAGACACCCTTGGTTTCCATGGAATCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CCA 90 bp TCGGCTGACATTTGGCATCTGGGCCATGTGCAGTTAGTTCCCAGCTaGAAACAAGCAAGTCAGAGGACAAACATGGCGCACAGCAGCAGT +
Preference number: 1 (lower is better)
Translates to: SADIWHLGHVQLVPS*KQASQRTNMAHSSS
Trigger: ACTGCTGCTGTGCGCCATGTTTGTCCTCTGACTTGCTTGTTTCCAGCTGGGAACTAACTGCACATGGCCCAGATGCCAAATGTCAGCCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CCA 90 bp ACAAGTACCATGTCCACCTGCGGTGACAAGCATCAGCAAAGTTCCTaGGGAACAAAGCCACCCTTAGCTGATAGCCACCGCTACAGGCTA +
Preference number: 1 (lower is better)
Translates to: TSTMSTCGDKHQQSS*GTKPPLADSHRYRL
Trigger: TAGCCTGTAGCGGTGGCTATCAGCTAAGGGTGGCTTTGTTCCCCAGGAACTTTGCTGATGCTTGTCACCGCAGGTGGACATGGTACTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CCA 90 bp CACCCTGCTGTGTTCGCCAGCCCCCAACCGCACAAATGTGACACTTaGGAAGAACTGTCTGCACTTGTCACAGTCTGGGTAGAAACAGAT +
Preference number: 1 (lower is better)
Translates to: HPAVFASPQPHKCDT*EELSALVTVWVETD
Trigger: ATCTGTTTCTACCCAGACTGTGACAAGTGCAGACAGTTCTTCCCAAGTGTCACATTTGTGCGGTTGGGGGCTGGCGAACACAGCAGGGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CCA 90 bp CCCAGTGGCATAGCCCCAACTCAATTATTTAGAGGCCTAGCTTCATaGGAACTGAAACACACCACATTCTTCCCCAGACCTGACCCACCG +
Preference number: 1 (lower is better)
Translates to: PSGIAPTQLFRGLAS*ELKHTTFFPRPDPP
Trigger: CGGTGGGTCAGGTCTGGGGAAGAATGTGGTGTGTTTCAGTTCCCATGAAGCTAGGCCTCTAAATAATTGAGTTGGGGCTATGCCACTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CCA 90 bp GTAGTGGCCGCTTCCGTCCTTCCATCAGGCAGGTTTTCCCAGCAATaGGACTTAGCGTGTAATGCTTGGGAACAAATGTTAAGTTCCTCT +
Preference number: 1 (lower is better)
Translates to: VVAASVLPSGRFSQQ*DLACNAWEQMLSSS
Trigger: AGAGGAACTTAACATTTGTTCCCAAGCATTACACGCTAAGTCCCATTGCTGGGAAAACCTGCCTGATGGAAGGACGGAAGCGGCCACTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR GCA 90 bp GAAGTGGAACAAATCAAGAGACTGTGCACAATGCAGGTTAAGTGCTaGAGCAGGAGCCGCAAACTCACACCACAGGATGATCAGATTGTC +
Preference number: 1 (lower is better)
Translates to: EVEQIKRLCTMQVKC*SRSRKLTPQDDQIV
Trigger: GACAATCTGATCATCCTGTGGTGTGAGTTTGCGGCTCCTGCTGCAGCACTTAACCTGCATTGTGCACAGTCTCTTGATTTGTTCCACTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR TCA 90 bp AACCTCGTGAACTCTAGTTACATAATGAGGTCTACCAGCAACGTGTaGGAAGCTGTGAATAAAGTGGCTGAACCAGGAAGCTCTCCCCAT +
Preference number: 1 (lower is better)
Translates to: NLVNSSYIMRSTSNV*EAVNKVAEPGSSPH
Trigger: ATGGGGAGAGCTTCCTGGTTCAGCCACTTTATTCACAGCTTCTCACACGTTGCTGGTAGACCTCATTATGTAACTAGAGTTCACGAGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CCA 90 bp TCTCTGTCACCTCAAATCTCTAAAGGTTTATTGCTCCGGATTCCATaGAAACCAAGGGTGTCTGACAAAACAGAGGCACAGGTGACAATA +
Preference number: 1 (lower is better)
Translates to: SLSPQISKGLLLRIP*KPRVSDKTEAQVTI
Trigger: TATTGTCACCTGTGCCTCTGTTTTGTCAGACACCCTTGGTTTCCATGGAATCCGGAGCAATAAACCTTTAGAGATTTGAGGTGACAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CCA 90 bp CACAAATGTGACACTTGGGAAGAACTGTCTGCACTTGTCACAGTCTaGGTAGAAACAGATAAGCCATTCACAGAGCATGCAGGTATTTAT +
Preference number: 1 (lower is better)
Translates to: HKCDTWEELSALVTV*VETDKPFTEHAGIY
Trigger: ATAAATACCTGCATGCTCTGTGAATGGCTTATCTGTTTCTACCCAGACTGTGACAAGTGCAGACAGTTCTTCCCAAGTGTCACATTTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR GCA 90 bp GGAACAAATGTTAAGTTCCTCTGGAGACCAAACTCAGGTGGAGAGTaGCAACGAAGCCATCTCTCTAATCCAAAACTTGCGTTTAAAAAT +
Preference number: 1 (lower is better)
Translates to: GTNVKFLWRPNSGGE*QRSHLSNPKLAFKN
Trigger: ATTTTTAAACGCAAGTTTTGGATTAGAGAGATGGCTTCGTTGGCACTCTCCACCTGAGTTTGGTCTCCAGAGGAACTTAACATTTGTTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR GCA 90 bp ACAATACACCCTGCTGTGTTCGCCAGCCCCCAACCGCACAAATGTGACACTTGGGGCTGTCCTGTGCCCTaGAGGACTCGGCTCTGTCCT +
Preference number: 2 (lower is better)
Translates to: TIHPAVFASPQPHKCDTWGCPVP*RTRLCP
Trigger: AGGACAGAGCCGAGTCCTGCAGGGCACAGGACAGCC...CCAAGTGTCACATTTGTGCGGTTGGGGGCTGGCGAACACAGCAGGGTGTATTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR CCA 90 bp TACTCCACGGTGGGGCTGTCCTGTGCCCTGCAGGACTCGGCTCTGTCCTATGGACATCAGCAAAGTTCCTaGGGAACAAAGCCACCCTTA +
Preference number: 2 (lower is better)
Translates to: YSTVGLSCALQDSALSYGHQQSS*GTKPPL
Trigger: TAAGGGTGGCTTTGTTCCCCAGGAACTTTGCTGATG...TCCATAGGACAGAGCCGAGTCCTGCAGGGCACAGGACAGCCCCACCGTGGAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR CCA 90 bp ACAATACACCCTGCTGTGTTCGCCAGCCCCCAACCGCACAAATGTGACACTTGGACCGCTCCCTCAGCCTaGGCACTGCTGACATTATGT +
Preference number: 2 (lower is better)
Translates to: TIHPAVFASPQPHKCDTWTAPSA*ALLTLC
Trigger: ACATAATGTCAGCAGTGCCCAGGCTGAGGGAGCGGT...CCAAGTGTCACATTTGTGCGGTTGGGGGCTGGCGAACACAGCAGGGTGTATTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR CCA 90 bp ACAATACACCCTGCTGTGTTCGCCAGCCCCCAACCGCACAAATGTGACACTTGGGTCAGAGGACAAACATaGCGCACAGCAGCAGTTCAC +
Preference number: 2 (lower is better)
Translates to: TIHPAVFASPQPHKCDTWVRGQT*RTAAVH
Trigger: GTGAACTGCTGCTGTGCGCCATGTTTGTCCTCTGAC...CCAAGTGTCACATTTGTGCGGTTGGGGGCTGGCGAACACAGCAGGGTGTATTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR GCA 90 bp CTGTGCACAATGCAGGTTAAGTGCTGCAGCAGGAGCCGCAAACTCACACCACAGAGTACCATGTCCACCTaGGGTGACAAGCATCAGCAA +
Preference number: 2 (lower is better)
Translates to: LCTMQVKCCSRSRKLTPQSTMST*GDKHQQ
Trigger: TTGCTGATGCTTGTCACCGCAGGTGGACATGGTACT...CTGTGGTGTGAGTTTGCGGCTCCTGCTGCAGCACTTAACCTGCATTGTGCACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR CCA 90 bp ACAATACACCCTGCTGTGTTCGCCAGCCCCCAACCGCACAAATGTGACACTTGGCTCGGCTCTGTCCTATaGACACAAGTACCATGTCCA +
Preference number: 2 (lower is better)
Translates to: TIHPAVFASPQPHKCDTWLGSVL*TQVPCP
Trigger: TGGACATGGTACTTGTGTCCATAGGACAGAGCCGAG...CCAAGTGTCACATTTGTGCGGTTGGGGGCTGGCGAACACAGCAGGGTGTATTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR GCA 90 bp CTGTGCACAATGCAGGTTAAGTGCTGCAGCAGGAGCCGCAAACTCACACCACAGTTGGGAAGAACTGTCTaGACTTGTCACAGTCTGGGT +
Preference number: 2 (lower is better)
Translates to: LCTMQVKCCSRSRKLTPQLGRTV*TCHSLG
Trigger: ACCCAGACTGTGACAAGTGCAGACAGTTCTTCCCAA...CTGTGGTGTGAGTTTGCGGCTCCTGCTGCAGCACTTAACCTGCATTGTGCACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR TCA 90 bp AAAGCCAGAGGGCCACCTCAAGTGCTGTTGGTCGGGAGTGACTCGTGCATCACTCATGGTTACACAAGCTaGGGTATTAATACCGGCATA +
Preference number: 2 (lower is better)
Translates to: KARGPPQVLLVGSDSCITHGYTS*GINTGI
Trigger: TATGCCGGTATTAATACCTCAGCTTGTGTAACCATG...AGTGATGCACGAGTCACTCCCGACCAACAGCACTTGAGGTGGCCCTCTGGCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR CCA 90 bp AAAGCCAGAGGGCCACCTCAAGTGCTGTTGGTCGGGAGTGACTCGTGCATCACTACAAAACATTCCCAGTaGCATAGCCCCAACTCAATT +
Preference number: 2 (lower is better)
Translates to: KARGPPQVLLVGSDSCITTKHSQ*HSPNSI
Trigger: AATTGAGTTGGGGCTATGCCACTGGGAATGTTTTGT...AGTGATGCACGAGTCACTCCCGACCAACAGCACTTGAGGTGGCCCTCTGGCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CAA 90 bp TGCACACATGTGTGTGTGAAAGCCAGAGGGCCACCTCAAGTGCTGTaGGTCGGGAGTGACTCGTGCATCACTTTATTTTGTGTGCACATA +
Preference number: 2 (lower is better)
Translates to: CTHVCVKARGPPQVL*VGSDSCITLFCVHI
Trigger: TATGTGCACACAAAATAAAGTGATGCACGAGTCACTCCCGACCAACAGCACTTGAGGTGGCCCTCTGGCTTTCACACACACATGTGTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR GCA 90 bp CTGTGCACAATGCAGGTTAAGTGCTGCAGCAGGAGCCGCAAACTCACACCACAGTCTCTAAAGGTTTATTaGTCCGGATTCCATGGAAAC +
Preference number: 2 (lower is better)
Translates to: LCTMQVKCCSRSRKLTPQSLKVY*SGFHGN
Trigger: GTTTCCATGGAATCCGGAGCAATAAACCTTTAGAGA...CTGTGGTGTGAGTTTGCGGCTCCTGCTGCAGCACTTAACCTGCATTGTGCACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR CCA 90 bp AGCTTTCCACAACTACTCAGTAAACTCAGTGCTCACTGTGTCCATCAGTGCCTGCAGTTAGTTCCCAGCTaGAAACAAGCAAGTCAGAGG +
Preference number: 2 (lower is better)
Translates to: SFPQLLSKLSAHCVHQCLQLVPS*KQASQR
Trigger: CCTCTGACTTGCTTGTTTCCAGCTGGGAACTAACTG...CAGGCACTGATGGACACAGTGAGCACTGAGTTTACTGAGTAGTTGTGGAAAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR TCA 90 bp CAGATAAGCCATTCACAGAGCATGCAGGTATTTATAATTCTGTATCCAGAAAAAATTCTTCCCCAGACCTaGCCCACCGCTCCCTCAGCC +
Preference number: 2 (lower is better)
Translates to: QISHSQSMQVFIILYPEKILPQT*PTAPSA
Trigger: GGCTGAGGGAGCGGTGGGTCAGGTCTGGGGAAGAAT...TTTTTCTGGATACAGAATTATAAATACCTGCATGCTCTGTGAATGGCTTATCTG
47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR TCA 90 bp CTAAGTCTGGGTCTCTGTCACCTCAAATCTCTAAAGGTTTATTGCTCCGGATTCGAAACCAAGGGTGTCTaGCAAAACAGAGGCACAGGT +
Preference number: 2 (lower is better)
Translates to: LSLGLCHLKSLKVYCSGFETKGV*QNRGTG
Trigger: ACCTGTGCCTCTGTTTTGTCAGACACCCTTGGTTTC...GAATCCGGAGCAATAAACCTTTAGAGATTTGAGGTGACAGAGACCCAGACTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CAA 90 bp GTCTCTAAGTCTGGGTCTCTGTCACCTCAAATCTCTAAAGGTTTATaGCTCCGGATTCCATGGAAACCAAGGGTGTCTGACAAAACAGAG +
Preference number: 2 (lower is better)
Translates to: VSKSGSLSPQISKGL*LRIPWKPRVSDKTE
Trigger: CTCTGTTTTGTCAGACACCCTTGGTTTCCATGGAATCCGGAGCAATAAACCTTTAGAGATTTGAGGTGACAGAGACCCAGACTTAGAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR TCA 90 bp CAGCAATGGGACTTAGCGTGTAATGCTTGGGAACAAATGTTAAGTTCCTCTGGAGAGTCCAGGCCTATCTaGCACTCAGTTGTTTCAGAT +
Preference number: 2 (lower is better)
Translates to: QQWDLACNAWEQMLSSSGESRPI*HSVVSD
Trigger: ATCTGAAACAACTGAGTGTCAGATAGGCCTGGACTC...TCCAGAGGAACTTAACATTTGTTCCCAAGCATTACACGCTAAGTCCCATTGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR CCA 90 bp AAGATGGTTATTTTAGGGCTTTCCAGAGCTTTCCACAACTACTCAGTAAACTCAGAGTCGGCTGACATTTaGCATCTGGGCCATGTGCAG +
Preference number: 2 (lower is better)
Translates to: KMVILGLSRAFHNYSVNSESADI*HLGHVQ
Trigger: CTGCACATGGCCCAGATGCCAAATGTCAGCCGACTC...TGAGTTTACTGAGTAGTTGTGGAAAGCTCTGGAAAGCCCTAAAATAACCATCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR GCA 90 bp CAGCAATGGGACTTAGCGTGTAATGCTTGGGAACAAATGTTAAGTTCCTCTGGAATCCACAACCACACGTaGAGAAACAAGGCAAGAAAG +
Preference number: 2 (lower is better)
Translates to: QQWDLACNAWEQMLSSSGIHNHT*RNKARK
Trigger: CTTTCTTGCCTTGTTTCTGCACGTGTGGTTGTGGAT...TCCAGAGGAACTTAACATTTGTTCCCAAGCATTACACGCTAAGTCCCATTGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR GCA 90 bp AGCTTTCCACAACTACTCAGTAAACTCAGTGCTCACTGTGTCCATCAGTGCCTGATATGTGTAGCAGTGTaGACACATGTGTGTGTGAAA +
Preference number: 2 (lower is better)
Translates to: SFPQLLSKLSAHCVHQCLICVAV*THVCVK
Trigger: TTTCACACACACATGTGTGCACACTGCTACACATAT...CAGGCACTGATGGACACAGTGAGCACTGAGTTTACTGAGTAGTTGTGGAAAGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR TCA 90 bp AAGATGGTTATTTTAGGGCTTTCCAGAGCTTTCCACAACTACTCAGTAAACTCATCCTTTACGGAAGTGTaGACACAGCACTGGGCAAAC +
Preference number: 2 (lower is better)
Translates to: KMVILGLSRAFHNYSVNSSFTEV*TQHWAN
Trigger: GTTTGCCCAGTGCTGTGTTCACACTTCCGTAAAGGA...TGAGTTTACTGAGTAGTTGTGGAAAGCTCTGGAAAGCCCTAAAATAACCATCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR GCA 90 bp CAGCAATGGGACTTAGCGTGTAATGCTTGGGAACAAATGTTAAGTTCCTCTGGACAAATCAAGAGACTGTaGACAATGCAGGTTAAGTGC +
Preference number: 2 (lower is better)
Translates to: QQWDLACNAWEQMLSSSGQIKRL*TMQVKC
Trigger: GCACTTAACCTGCATTGTGCACAGTCTCTTGATTTG...TCCAGAGGAACTTAACATTTGTTCCCAAGCATTACACGCTAAGTCCCATTGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR TCA 90 bp AAGATGGTTATTTTAGGGCTTTCCAGAGCTTTCCACAACTACTCAGTAAACTCAACGTGTGAGAAGCTGTaGATAAAGTGGCTGAACCAG +
Preference number: 2 (lower is better)
Translates to: KMVILGLSRAFHNYSVNSTCEKL*IKWLNQ
Trigger: CTGGTTCAGCCACTTTATTCACAGCTTCTCACACGT...TGAGTTTACTGAGTAGTTGTGGAAAGCTCTGGAAAGCCCTAAAATAACCATCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR GCA 90 bp AGCTTTCCACAACTACTCAGTAAACTCAGTGCTCACTGTGTCCATCAGTGCCTGTTCATAGTTGCACCTTaGAGGATTTTCCTTAATATC +
Preference number: 2 (lower is better)
Translates to: SFPQLLSKLSAHCVHQCLFIVAP*RIFLNI
Trigger: GATATTAAGGAAAATCCTGCAAGGTGCAACTATGAA...CAGGCACTGATGGACACAGTGAGCACTGAGTTTACTGAGTAGTTGTGGAAAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR TCA 90 bp CAGATAAGCCATTCACAGAGCATGCAGGTATTTATAATTCTGTATCCAGAAAAACAGCCTGGGCACTGCTaGCATTATGTACACAGCAAT +
Preference number: 2 (lower is better)
Translates to: QISHSQSMQVFIILYPEKQPGHC*HYVHSN
Trigger: ATTGCTGTGTACATAATGTCAGCAGTGCCCAGGCTG...TTTTTCTGGATACAGAATTATAAATACCTGCATGCTCTGTGAATGGCTTATCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR TCA 90 bp AAGATGGTTATTTTAGGGCTTTCCAGAGCTTTCCACAACTACTCAGTAAACTCATTTTCCACGGAGTCTTaGCTTTACAGCTTTCATTCT +
Preference number: 2 (lower is better)
Translates to: KMVILGLSRAFHNYSVNSFSTES*LYSFHS
Trigger: AGAATGAAAGCTGTAAAGTCAAGACTCCGTGGAAAA...TGAGTTTACTGAGTAGTTGTGGAAAGCTCTGGAAAGCCCTAAAATAACCATCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR CCA 90 bp AAGATGGTTATTTTAGGGCTTTCCAGAGCTTTCCACAACTACTCAGTAAACTCATTAGCGTGTAATGCTTaGGAACAAATGTTAAGTTCC +
Preference number: 2 (lower is better)
Translates to: KMVILGLSRAFHNYSVNSLACNA*EQMLSS
Trigger: GGAACTTAACATTTGTTCCCAAGCATTACACGCTAA...TGAGTTTACTGAGTAGTTGTGGAAAGCTCTGGAAAGCCCTAAAATAACCATCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR-3UTR TCA 90 bp CAGATAAGCCATTCACAGAGCATGCAGGTATTTATAATTCTGTATCCAGAAAAAACCAAACGGTTCATTTaGCATACTATTTTCCACGGA +
Preference number: 2 (lower is better)
Translates to: QISHSQSMQVFIILYPEKTKRFI*HTIFHG
Trigger: TCCGTGGAAAATAGTATGTCAAATGAACCGTTTGGT...TTTTTCTGGATACAGAATTATAAATACCTGCATGCTCTGTGAATGGCTTATCTG
37% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR GCA 72 bp AGAACGCGGACATCGCAGCCGCTCTCTGCCCCATTCTaGCCCACTGGCCTCAGACACAAAGGCCTGAAGGGA +
Preference number: 3 (lower is better)
Translates to: RTRTSQPLSAPF*PTGLRHKGLKG
Trigger: TCCCTTCAGGCCTTTGTGTCTGAGGCCAGTGGGGCAGAATGGGGCAGAGAGCGGCTGCGATGTCCGCGTTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR GCA 72 bp CACAGCAATACTCCACGGTGGGGCTGTCCTGTGCCCTaGAGGACTCGGCTCTGTCCTATGGACACAAGTACC +
Preference number: 3 (lower is better)
Translates to: HSNTPRWGCPVP*RTRLCPMDTST
Trigger: GGTACTTGTGTCCATAGGACAGAGCCGAGTCCTGCAGGGCACAGGACAGCCCCACCGTGGAGTATTGCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CCA 72 bp GCTGTCCTGTGCCCTGCAGGACTCGGCTCTGTCCTATaGACACAAGTACCATGTCCACCTGCGGTGACAAGC +
Preference number: 3 (lower is better)
Translates to: AVLCPAGLGSVL*TQVPCPPAVTS
Trigger: GCTTGTCACCGCAGGTGGACATGGTACTTGTGTCCATAGGACAGAGCCGAGTCCTGCAGGGCACAGGACAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR GCA 72 bp ATGTACACAGCAATACTCCACGGTGGGGCTGTCCTGTaGCCTGCAGGACTCGGCTCTGTCCTATGGACACAA +
Preference number: 3 (lower is better)
Translates to: MYTAILHGGAVL*PAGLGSVLWTQ
Trigger: TTGTGTCCATAGGACAGAGCCGAGTCCTGCAGGGCACAGGACAGCCCCACCGTGGAGTATTGCTGTGTACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR TCA 72 bp CCCTGCTGTGTTCGCCAGCCCCCAACCGCACAAATGTaGCACTTGGGAAGAACTGTCTGCACTTGTCACAGT +
Preference number: 3 (lower is better)
Translates to: PCCVRQPPTAQM*HLGRTVCTCHS
Trigger: ACTGTGACAAGTGCAGACAGTTCTTCCCAAGTGTCACATTTGTGCGGTTGGGGGCTGGCGAACACAGCAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR TCA 72 bp GGAAACCAAGGGTGTCTGACAAAACAGAGGCACAGGTaGCAATACACCCTGCTGTGTTCGCCAGCCCCCAAC +
Preference number: 3 (lower is better)
Translates to: GNQGCLTKQRHR*QYTLLCSPAPN
Trigger: GTTGGGGGCTGGCGAACACAGCAGGGTGTATTGTCACCTGTGCCTCTGTTTTGTCAGACACCCTTGGTTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CCA 72 bp ATGTCCACCTGCGGTGACAAGCATCAGCAAAGTTCCTaGGGAACAAAGCCACCCTTAGCTGATAGCCACCGC +
Preference number: 3 (lower is better)
Translates to: MSTCGDKHQQSS*GTKPPLADSHR
Trigger: GCGGTGGCTATCAGCTAAGGGTGGCTTTGTTCCCCAGGAACTTTGCTGATGCTTGTCACCGCAGGTGGACAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR GCA 72 bp CGGCTCTGTCCTATGGACACAAGTACCATGTCCACCTaGGGTGACAAGCATCAGCAAAGTTCCTGGGGAACA +
Preference number: 3 (lower is better)
Translates to: RLCPMDTSTMST*GDKHQQSSWGT
Trigger: TGTTCCCCAGGAACTTTGCTGATGCTTGTCACCGCAGGTGGACATGGTACTTGTGTCCATAGGACAGAGCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CCA 72 bp GTGTTCGCCAGCCCCCAACCGCACAAATGTGACACTTaGGAAGAACTGTCTGCACTTGTCACAGTCTGGGTA +
Preference number: 3 (lower is better)
Translates to: VFASPQPHKCDT*EELSALVTVWV
Trigger: TACCCAGACTGTGACAAGTGCAGACAGTTCTTCCCAAGTGTCACATTTGTGCGGTTGGGGGCTGGCGAACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR TCA 72 bp GGCAAGAAAGCCGGTCAGGGTCATGGTTACACAAGCTaGGGTATTAATACCGGCATATGCCAGAACGCGGAC +
Preference number: 3 (lower is better)
Translates to: GKKAGQGHGYTS*GINTGICQNAD
Trigger: GTCCGCGTTCTGGCATATGCCGGTATTAATACCTCAGCTTGTGTAACCATGACCCTGACCGGCTTTCTTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR TCA 72 bp GTGCTGCAGCAGGAGCCGCAAACTCACACCACAGGATaGTCAGATTGTCACAAGACAGTGAGTAGGTTTCTG +
Preference number: 3 (lower is better)
Translates to: VLQQEPQTHTTG*SDCHKTVSRFL
Trigger: CAGAAACCTACTCACTGTCTTGTGACAATCTGATCATCCTGTGGTGTGAGTTTGCGGCTCCTGCTGCAGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR TCA 72 bp AGCCAGAGGGCCACCTCAAGTGCTGTTGGTCGGGAGTaGCTCGTGCATCACTTTATTTTGTGTGCACATACA +
Preference number: 3 (lower is better)
Translates to: SQRATSSAVGRE*LVHHFILCAHT
Trigger: TGTATGTGCACACAAAATAAAGTGATGCACGAGTCACTCCCGACCAACAGCACTTGAGGTGGCCCTCTGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CCA 72 bp ATTTGGCATCTGGGCCATGTGCAGTTAGTTCCCAGCTaGAAACAAGCAAGTCAGAGGACAAACATGGCGCAC +
Preference number: 3 (lower is better)
Translates to: IWHLGHVQLVPS*KQASQRTNMAH
Trigger: GTGCGCCATGTTTGTCCTCTGACTTGCTTGTTTCCAGCTGGGAACTAACTGCACATGGCCCAGATGCCAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR GCA 72 bp CAAATCAAGAGACTGTGCACAATGCAGGTTAAGTGCTaGAGCAGGAGCCGCAAACTCACACCACAGGATGAT +
Preference number: 3 (lower is better)
Translates to: QIKRLCTMQVKC*SRSRKLTPQDD
Trigger: ATCATCCTGTGGTGTGAGTTTGCGGCTCCTGCTGCAGCACTTAACCTGCATTGTGCACAGTCTCTTGATTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR GCA 72 bp GGGCCACCTCAAGTGCTGTTGGTCGGGAGTGACTCGTaGATCACTTTATTTTGTGTGCACATACAGTTAGAG +
Preference number: 3 (lower is better)
Translates to: GPPQVLLVGSDS*ITLFCVHIQLE
Trigger: CTCTAACTGTATGTGCACACAAAATAAAGTGATGCACGAGTCACTCCCGACCAACAGCACTTGAGGTGGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CCA 72 bp AAGGACCTTTTTCTAAACCATGAGTCGGCTGACATTTaGCATCTGGGCCATGTGCAGTTAGTTCCCAGCTGG +
Preference number: 3 (lower is better)
Translates to: KDLFLNHESADI*HLGHVQLVPSW
Trigger: CCAGCTGGGAACTAACTGCACATGGCCCAGATGCCAAATGTCAGCCGACTCATGGTTTAGAAAAAGGTCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR TCA 72 bp TTTATTGCTCCGGATTCCATGGAAACCAAGGGTGTCTaGCAAAACAGAGGCACAGGTGACAATACACCCTGC +
Preference number: 3 (lower is better)
Translates to: FIAPDSMETKGV*QNRGTGDNTPC
Trigger: GCAGGGTGTATTGTCACCTGTGCCTCTGTTTTGTCAGACACCCTTGGTTTCCATGGAATCCGGAGCAATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR GCA 72 bp GTTAAGTTCCTCTGGAGACCAAACTCAGGTGGAGAGTaGCAACGAAGCCATCTCTCTAATCCAAAACTTGCG +
Preference number: 3 (lower is better)
Translates to: VKFLWRPNSGGE*QRSHLSNPKLA
Trigger: CGCAAGTTTTGGATTAGAGAGATGGCTTCGTTGGCACTCTCCACCTGAGTTTGGTCTCCAGAGGAACTTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CCA 72 bp GCTTCCGTCCTTCCATCAGGCAGGTTTTCCCAGCAATaGGACTTAGCGTGTAATGCTTGGGAACAAATGTTA +
Preference number: 3 (lower is better)
Translates to: ASVLPSGRFSQQ*DLACNAWEQML
Trigger: TAACATTTGTTCCCAAGCATTACACGCTAAGTCCCATTGCTGGGAAAACCTGCCTGATGGAAGGACGGAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR GCA 72 bp CTGGGTCTCTGTCACCTCAAATCTCTAAAGGTTTATTaGTCCGGATTCCATGGAAACCAAGGGTGTCTGACA +
Preference number: 3 (lower is better)
Translates to: LGLCHLKSLKVY*SGFHGNQGCLT
Trigger: TGTCAGACACCCTTGGTTTCCATGGAATCCGGAGCAATAAACCTTTAGAGATTTGAGGTGACAGAGACCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR GCA 72 bp AATGTGAAGTGGAACAAATCAAGAGACTGTGCACAATaGAGGTTAAGTGCTGCAGCAGGAGCCGCAAACTCA +
Preference number: 3 (lower is better)
Translates to: NVKWNKSRDCAQ*RLSAAAGAANS
Trigger: TGAGTTTGCGGCTCCTGCTGCAGCACTTAACCTGCATTGTGCACAGTCTCTTGATTTGTTCCACTTCACATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR GCA 72 bp TTTGTTCAATGTGAAGTGGAACAAATCAAGAGACTGTaGACAATGCAGGTTAAGTGCTGCAGCAGGAGCCGC +
Preference number: 3 (lower is better)
Translates to: FVQCEVEQIKRL*TMQVKCCSRSR
Trigger: GCGGCTCCTGCTGCAGCACTTAACCTGCATTGTGCACAGTCTCTTGATTTGTTCCACTTCACATTGAACAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CCA 72 bp ATAGCCCCAACTCAATTATTTAGAGGCCTAGCTTCATaGGAACTGAAACACACCACATTCTTCCCCAGACCT +
Preference number: 3 (lower is better)
Translates to: IAPTQLFRGLAS*ELKHTTFFPRP
Trigger: AGGTCTGGGGAAGAATGTGGTGTGTTTCAGTTCCCATGAAGCTAGGCCTCTAAATAATTGAGTTGGGGCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CCA 72 bp CCTCAAATCTCTAAAGGTTTATTGCTCCGGATTCCATaGAAACCAAGGGTGTCTGACAAAACAGAGGCACAG +
Preference number: 3 (lower is better)
Translates to: PQISKGLLLRIP*KPRVSDKTEAQ
Trigger: CTGTGCCTCTGTTTTGTCAGACACCCTTGGTTTCCATGGAATCCGGAGCAATAAACCTTTAGAGATTTGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR TCA 72 bp AACTCTAGTTACATAATGAGGTCTACCAGCAACGTGTaGGAAGCTGTGAATAAAGTGGCTGAACCAGGAAGC +
Preference number: 3 (lower is better)
Translates to: NSSYIMRSTSNV*EAVNKVAEPGS
Trigger: GCTTCCTGGTTCAGCCACTTTATTCACAGCTTCTCACACGTTGCTGGTAGACCTCATTATGTAACTAGAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR TCA 72 bp AAGGGAACACATCTAGTTGGTGAGTCCAGGCCTATCTaGCACTCAGTTGTTTCAGATTTATCTAACGGACTA +
Preference number: 3 (lower is better)
Translates to: KGTHLVGESRPI*HSVVSDLSNGL
Trigger: TAGTCCGTTAGATAAATCTGAAACAACTGAGTGTCAGATAGGCCTGGACTCACCAACTAGATGTGTTCCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR GCA 72 bp AGCACAGAACCCAACTGCTTGTTCATAGTTGCACCTTaGAGGATTTTCCTTAATATCAGGGCAAAATGTTTA +
Preference number: 3 (lower is better)
Translates to: STEPNCLFIVAP*RIFLNIRAKCL
Trigger: TAAACATTTTGCCCTGATATTAAGGAAAATCCTGCAAGGTGCAACTATGAACAAGCAGTTGGGTTCTGTGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
CDS-3UTR TCA 90 bp TACTCCACGGTGGGGCTGTCCTGTGCCCTGCAGGACTCGGCTCTGTCCTATGGATCACCGCAGGGATGCTaGCTGGGAAGGATCGGACTG +
Preference number: 4 (lower is better)
Translates to: YSTVGLSCALQDSALSYGSPQGC*LGRIGL
Trigger: CAGTCCGATCCTTCCCAGTCAGCATCCCTGCGGTGA...TCCATAGGACAGAGCCGAGTCCTGCAGGGCACAGGACAGCCCCACCGTGGAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
CDS-3UTR TCA 90 bp CTGTGCACAATGCAGGTTAAGTGCTGCAGCAGGAGCCGCAAACTCACACCACAGGTGAGGAGAAGCAAGTaGGAAGGAGGCACAGCAGGT +
Preference number: 4 (lower is better)
Translates to: LCTMQVKCCSRSRKLTPQVRRSK*EGGTAG
Trigger: ACCTGCTGTGCCTCCTTCTCACTTGCTTCTCCTCAC...CTGTGGTGTGAGTTTGCGGCTCCTGCTGCAGCACTTAACCTGCATTGTGCACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
CDS-3UTR CCA 90 bp GGCCATGTGCAGTTAGTTCCCAGCTGGAAACAAGCAAGTCAGAGGACAAACATGAGGAGGCACAGCAGGTaGAAGGCAAGGAGTCCTAGG +
Preference number: 4 (lower is better)
Translates to: GHVQLVPSWKQASQRTNMRRHSR*KARSPR
Trigger: CCTAGGACTCCTTGCCTTCCACCTGCTGTGCCTCCT...CATGTTTGTCCTCTGACTTGCTTGTTTCCAGCTGGGAACTAACTGCACATGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CAA 72 bp GTGTGTGTGAAAGCCAGAGGGCCACCTCAAGTGCTGTaGGTCGGGAGTGACTCGTGCATCACTTTATTTTGT +
Preference number: 4 (lower is better)
Translates to: VCVKARGPPQVL*VGSDSCITLFC
Trigger: ACAAAATAAAGTGATGCACGAGTCACTCCCGACCAACAGCACTTGAGGTGGCCCTCTGGCTTTCACACACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
CDS-3UTR GCA 90 bp GACACTTGGGAAGAACTGTCTGCACTTGTCACAGTCTGGGTAGAAACAGATAAGACCAGACACAGGAAGTaGCCGATCTGTAGCTTATAC +
Preference number: 4 (lower is better)
Translates to: DTWEELSALVTVWVETDKTRHRK*PICSLY
Trigger: GTATAAGCTACAGATCGGGCACTTCCTGTGTCTGGT...CTTATCTGTTTCTACCCAGACTGTGACAAGTGCAGACAGTTCTTCCCAAGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
3UTR CAA 72 bp TCTGGGTCTCTGTCACCTCAAATCTCTAAAGGTTTATaGCTCCGGATTCCATGGAAACCAAGGGTGTCTGAC +
Preference number: 4 (lower is better)
Translates to: SGSLSPQISKGL*LRIPWKPRVSD
Trigger: GTCAGACACCCTTGGTTTCCATGGAATCCGGAGCAATAAACCTTTAGAGATTTGAGGTGACAGAGACCCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
CDS-3UTR TCA 90 bp CAGCAATGGGACTTAGCGTGTAATGCTTGGGAACAAATGTTAAGTTCCTCTGGAGAAGAGCAGTGGCGCTaGGAACACAAGAGAAATGAA +
Preference number: 4 (lower is better)
Translates to: QQWDLACNAWEQMLSSSGEEQWR*EHKRNE
Trigger: TTCATTTCTCTTGTGTTCTCAGCGCCACTGCTCTTC...TCCAGAGGAACTTAACATTTGTTCCCAAGCATTACACGCTAAGTCCCATTGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
CDS TCA 90 bp TACCCACATAATCACAATGAGCATGGCGTTGAAGAGCAGTGGCGCTaGGAACACAAGAGAAATGAACATCCCCCGGGAGTCAAAGTACTG +
Preference number: 5 (lower is better)
Translates to: YPHNHNEHGVEEQWR*EHKRNEHPPGVKVL
Trigger: CAGTACTTTGACTCCCGGGGGATGTTCATTTCTCTTGTGTTCTCAGCGCCACTGCTCTTCAACGCCATGCTCATTGTGATTATGTGGGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
CDS CCA 90 bp GCTGAGAACACAAGAGAAATGAACATCCCCCGGGAGTCAAAGTACTaGTACTTTGAGAACAATCTCCAGTTCACTGCAGCCACTTCGTTG +
Preference number: 5 (lower is better)
Translates to: AENTREMNIPRESKY*YFENNLQFTAATSL
Trigger: CAACGAAGTGGCTGCAGTGAACTGGAGATTGTTCTCAAAGTACCAGTACTTTGACTCCCGGGGGATGTTCATTTCTCTTGTGTTCTCAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
CDS TCA 90 bp CACAAGAGAAATGAACATCCCCCGGGAGTCAAAGTACTGGTACTTTaGGAACAATCTCCAGTTCACTGCAGCCACTTCGTTGATGTACTC +
Preference number: 5 (lower is better)
Translates to: HKRNEHPPGVKVLVL*EQSPVHCSHFVDVL
Trigger: GAGTACATCAACGAAGTGGCTGCAGTGAACTGGAGATTGTTCTCAAAGTACCAGTACTTTGACTCCCGGGGGATGTTCATTTCTCTTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
CDS TCA 72 bp AATGAACATCCCCCGGGAGTCAAAGTACTGGTACTTTaGGAACAATCTCCAGTTCACTGCAGCCACTTCGTT +
Preference number: 6 (lower is better)
Translates to: NEHPPGVKVLVL*EQSPVHCSHFV
Trigger: AACGAAGTGGCTGCAGTGAACTGGAGATTGTTCTCAAAGTACCAGTACTTTGACTCCCGGGGGATGTTCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10
CDS CCA 72 bp ACAAGAGAAATGAACATCCCCCGGGAGTCAAAGTACTaGTACTTTGAGAACAATCTCCAGTTCACTGCAGCC +
Preference number: 6 (lower is better)
Translates to: TREMNIPRESKY*YFENNLQFTAA
Trigger: GGCTGCAGTGAACTGGAGATTGTTCTCAAAGTACCAGTACTTTGACTCCCGGGGGATGTTCATTTCTCTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057151.10