Pregenerated sensors for TMEM179B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000118346Ensembl transcript IDs: ENSMUST00000010249.7, ENSMUST00000237634.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCATCTGTCTCAGAGCTCCACTCTTGGTCACCCCTCTCTTGGGGCTaGTATGATGTGGCTTTAAACTTGCACTGCATGGCCTGGAGCAGC | + |
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Preference number: 1 (lower is better) Translates to: ASVSELHSWSPLSWG*YDVALNLHCMAWSS Trigger: GCTGCTCCAGGCCATGCAGTGCAAGTTTAAAGCCACATCATACCAGCCCCAAGAGAGGGGTGACCAAGAGTGGAGCTCTGAGACAGATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR TCA 90 bp | TGTCTCAGAGCTCCACTCTTGGTCACCCCTCTCTTGGGGCTGGTATaGTGTGGCTTTAAACTTGCACTGCATGGCCTGGAGCAGCAAAGC | + |
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Preference number: 1 (lower is better) Translates to: CLRAPLLVTPLLGLV*CGFKLALHGLEQQS Trigger: GCTTTGCTGCTCCAGGCCATGCAGTGCAAGTTTAAAGCCACATCATACCAGCCCCAAGAGAGGGGTGACCAAGAGTGGAGCTCTGAGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR CCA 90 bp | ACAAGAGCATCTGTCTCAGAGCTCCACTCTTGGTCACCCCTCTCTTaGGGCTGGTATGATGTGGCTTTAAACTTGCACTGCATGGCCTGG | + |
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Preference number: 1 (lower is better) Translates to: TRASVSELHSWSPLS*GWYDVALNLHCMAW Trigger: CCAGGCCATGCAGTGCAAGTTTAAAGCCACATCATACCAGCCCCAAGAGAGGGGTGACCAAGAGTGGAGCTCTGAGACAGATGCTCTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR GCA 90 bp | TCACCCCTCTCTTGGGGCTGGTATGATGTGGCTTTAAACTTGCACTaGATGGCCTGGAGCAGCAAAGCCAGACACCACAATATCAGATTC | + |
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Preference number: 1 (lower is better) Translates to: SPLSWGWYDVALNLH*MAWSSKARHHNIRF Trigger: GAATCTGATATTGTGGTGTCTGGCTTTGCTGCTCCAGGCCATGCAGTGCAAGTTTAAAGCCACATCATACCAGCCCCAAGAGAGGGGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR CCA 90 bp | TCTTGGGGCTGGTATGATGTGGCTTTAAACTTGCACTGCATGGCCTaGAGCAGCAAAGCCAGACACCACAATATCAGATTCACCCAAGAA | + |
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Preference number: 1 (lower is better) Translates to: SWGWYDVALNLHCMA*SSKARHHNIRFTQE Trigger: TTCTTGGGTGAATCTGATATTGTGGTGTCTGGCTTTGCTGCTCCAGGCCATGCAGTGCAAGTTTAAAGCCACATCATACCAGCCCCAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR CAA 90 bp | TCTTGGTCACCCCTCTCTTGGGGCTGGTATGATGTGGCTTTAAACTaGCACTGCATGGCCTGGAGCAGCAAAGCCAGACACCACAATATC | + |
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Preference number: 2 (lower is better) Translates to: SWSPLSWGWYDVALN*HCMAWSSKARHHNI Trigger: GATATTGTGGTGTCTGGCTTTGCTGCTCCAGGCCATGCAGTGCAAGTTTAAAGCCACATCATACCAGCCCCAAGAGAGGGGTGACCAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR-3UTR CCA 90 bp | AAACAGGGCTGTACAGAGACAAGAGGATTAAAAGCACTGGGGCATGGAGGTTCTCAGCAGTATGTAGGTTaGAGTAAAACTGCACAGCAG | + |
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Preference number: 2 (lower is better) Translates to: KQGCTETRGLKALGHGGSQQYVG*SKTAQQ Trigger: CTGCTGTGCAGTTTTACTCCAACCTACATACTGCTG...AGAACCTCCATGCCCCAGTGCTTTTAATCCTCTTGTCTCTGTACAGCCCTGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR-3UTR CCA 90 bp | CAAAGCCAGACACCACAATATCAGATTCACCCAAGAAGAGGTTTCAGCAGTATGGTCCATGAGGTTTTCTaGGCTTCAGAGCAGCTAATT | + |
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Preference number: 2 (lower is better) Translates to: QSQTPQYQIHPRRGFSSMVHEVF*ASEQLI Trigger: AATTAGCTGCTCTGAAGCCCAGAAAACCTCATGGAC...CATACTGCTGAAACCTCTTCTTGGGTGAATCTGATATTGTGGTGTCTGGCTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR CAA 90 bp | TGGGCTTCAGAGCAGCTAATTGTAAGGTTCAAGGAGATGATGGAATaGCAGAAAGAATTGGTGCCAAATCGAAGTATACAGGCAGACACT | + |
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Preference number: 2 (lower is better) Translates to: WASEQLIVRFKEMME*QKELVPNRSIQADT Trigger: AGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAGCTGCTCTGAAGCCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR-3UTR GCA 90 bp | CAAAGCCAGACACCACAATATCAGATTCACCCAAGAAGAGGTTTCAGCAGTATGTGCAGAAAGAATTGGTaGCAAATCGAAGTATACAGG | + |
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Preference number: 2 (lower is better) Translates to: QSQTPQYQIHPRRGFSSMCRKNW*QIEVYR Trigger: CCTGTATACTTCGATTTGGCACCAATTCTTTCTGCA...CATACTGCTGAAACCTCTTCTTGGGTGAATCTGATATTGTGGTGTCTGGCTTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR-3UTR CCA 90 bp | CTGGAGCAGCAAAGCCAGACACCACAATATCAGATTCACCCAAGAAGAGGTTTCAATTGCAGAAAGAATTaGTGCCAAATCGAAGTATAC | + |
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Preference number: 2 (lower is better) Translates to: LEQQSQTPQYQIHPRRGFNCRKN*CQIEVY Trigger: GTATACTTCGATTTGGCACCAATTCTTTCTGCAATT...GAAACCTCTTCTTGGGTGAATCTGATATTGTGGTGTCTGGCTTTGCTGCTCCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR CAA 90 bp | CAGCTAATTGTAAGGTTCAAGGAGATGATGGAATTGCAGAAAGAATaGGTGCCAAATCGAAGTATACAGGCAGACACTAAGATCAGGAAG | + |
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Preference number: 2 (lower is better) Translates to: QLIVRFKEMMELQKE*VPNRSIQADTKIRK Trigger: CTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAGCTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR TCA 72 bp | GCTCCACTCTTGGTCACCCCTCTCTTGGGGCTGGTATaGTGTGGCTTTAAACTTGCACTGCATGGCCTGGAG | + |
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Preference number: 3 (lower is better) Translates to: APLLVTPLLGLV*CGFKLALHGLE Trigger: CTCCAGGCCATGCAGTGCAAGTTTAAAGCCACATCATACCAGCCCCAAGAGAGGGGTGACCAAGAGTGGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR CCA 72 bp | TGCCCAACAAGAGCATCTGTCTCAGAGCTCCACTCTTaGTCACCCCTCTCTTGGGGCTGGTATGATGTGGCT | + |
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Preference number: 3 (lower is better) Translates to: CPTRASVSELHS*SPLSWGWYDVA Trigger: AGCCACATCATACCAGCCCCAAGAGAGGGGTGACCAAGAGTGGAGCTCTGAGACAGATGCTCTTGTTGGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR CCA 72 bp | TCAGAGCTCCACTCTTGGTCACCCCTCTCTTGGGGCTaGTATGATGTGGCTTTAAACTTGCACTGCATGGCC | + |
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Preference number: 3 (lower is better) Translates to: SELHSWSPLSWG*YDVALNLHCMA Trigger: GGCCATGCAGTGCAAGTTTAAAGCCACATCATACCAGCCCCAAGAGAGGGGTGACCAAGAGTGGAGCTCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR-3UTR CAA 90 bp | AAACAGGGCTGTACAGAGACAAGAGGATTAAAAGCACTGGGGCATGGAGGTTCTCTCAGAGCTCCACTCTaGGTCACCCCTCTCTTGGGG | + |
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Preference number: 3 (lower is better) Translates to: KQGCTETRGLKALGHGGSLRAPL*VTPLLG Trigger: CCCCAAGAGAGGGGTGACCAAGAGTGGAGCTCTGAG...AGAACCTCCATGCCCCAGTGCTTTTAATCCTCTTGTCTCTGTACAGCCCTGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR GCA 72 bp | TCTTGGGGCTGGTATGATGTGGCTTTAAACTTGCACTaGATGGCCTGGAGCAGCAAAGCCAGACACCACAAT | + |
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Preference number: 3 (lower is better) Translates to: SWGWYDVALNLH*MAWSSKARHHN Trigger: ATTGTGGTGTCTGGCTTTGCTGCTCCAGGCCATGCAGTGCAAGTTTAAAGCCACATCATACCAGCCCCAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR CCA 72 bp | TGCACAGCAGTTCCTGAAGGTGTCCATGAGGTTTTCTaGGCTTCAGAGCAGCTAATTGTAAGGTTCAAGGAG | + |
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Preference number: 3 (lower is better) Translates to: CTAVPEGVHEVF*ASEQLIVRFKE Trigger: CTCCTTGAACCTTACAATTAGCTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR CCA 72 bp | GATTCACCCAAGAAGAGGTTTCAGCAGTATGTAGGTTaGAGTAAAACTGCACAGCAGTTCCTGAAGGTGTCC | + |
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Preference number: 3 (lower is better) Translates to: DSPKKRFQQYVG*SKTAQQFLKVS Trigger: GGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAACCTCTTCTTGGGTGAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| CDS-3UTR TCA 90 bp | CAACAAGAGCATCTGTCTCAGAGCTCCACTCTTGGTCACCCCTCTCTTGGGGCTACAGGAAGGCGGCAGTaGAGAGCAAGAGCTCAACTC | + |
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Preference number: 4 (lower is better) Translates to: QQEHLSQSSTLGHPSLGATGRRQ*RARAQL Trigger: GAGTTGAGCTCTTGCTCTTCACTGCCGCCTTCCTGT...AGCCCCAAGAGAGGGGTGACCAAGAGTGGAGCTCTGAGACAGATGCTCTTGTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| 3UTR CAA 72 bp | CCCCTCTCTTGGGGCTGGTATGATGTGGCTTTAAACTaGCACTGCATGGCCTGGAGCAGCAAAGCCAGACAC | + |
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Preference number: 4 (lower is better) Translates to: PLSWGWYDVALN*HCMAWSSKARH Trigger: GTGTCTGGCTTTGCTGCTCCAGGCCATGCAGTGCAAGTTTAAAGCCACATCATACCAGCCCCAAGAGAGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| CDS-3UTR TCA 90 bp | GTTTTCTGGGCTTCAGAGCAGCTAATTGTAAGGTTCAAGGAGATGATGGAATTGGCAGAGGGAAGGGGCTaGGGGACCTGGGTCCGGGTC | + |
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Preference number: 4 (lower is better) Translates to: VFWASEQLIVRFKEMMELAEGRG*GTWVRV Trigger: GACCCGGACCCAGGTCCCTCAGCCCCTTCCCTCTGC...CAATTCCATCATCTCCTTGAACCTTACAATTAGCTGCTCTGAAGCCCAGAAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| CDS-3UTR GCA 90 bp | TCTCAGAGCTCCACTCTTGGTCACCCCTCTCTTGGGGCTGGTATGATGTGGCTTAGTCTTCGATGCAGCTaGTGTAGACCCAGAAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: SQSSTLGHPSLGAGMMWLSLRCS*CRPRRR Trigger: TCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACT...AAGCCACATCATACCAGCCCCAAGAGAGGGGTGACCAAGAGTGGAGCTCTGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| CDS-3UTR CCA 90 bp | AAACAGGGCTGTACAGAGACAAGAGGATTAAAAGCACTGGGGCATGGAGGTTCTTCAGAGCTCCACTCTTaGTCACCCCTCTCTTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: KQGCTETRGLKALGHGGSSELHS*SPLSWG Trigger: GCCCCAAGAGAGGGGTGACCAAGAGTGGAGCTCTGA...AGAACCTCCATGCCCCAGTGCTTTTAATCCTCTTGTCTCTGTACAGCCCTGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000010249.7 |
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| CDS-3UTR TCA 90 bp | AAACAGGGCTGTACAGAGACAAGAGGATTAAAAGCACTGGGGCATGGAGGTTCTCCAGAGAGGAGCCATTaGGTGCAGCCACACCATACA | + |
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Preference number: 4 (lower is better) Translates to: KQGCTETRGLKALGHGGSPERSH*VQPHHT Trigger: TGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGG...AGAACCTCCATGCCCCAGTGCTTTTAATCCTCTTGTCTCTGTACAGCCCTGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010249.7 |
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| CDS-3UTR CCA 90 bp | AAACAGGGCTGTACAGAGACAAGAGGATTAAAAGCACTGGGGCATGGAGGTTCTTTGCACTGCATGGCCTaGAGCAGCAAAGCCAGACAC | + |
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Preference number: 4 (lower is better) Translates to: KQGCTETRGLKALGHGGSLHCMA*SSKARH Trigger: GTGTCTGGCTTTGCTGCTCCAGGCCATGCAGTGCAA...AGAACCTCCATGCCCCAGTGCTTTTAATCCTCTTGTCTCTGTACAGCCCTGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010249.7 |
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| CDS-3UTR GCA 90 bp | AAACAGGGCTGTACAGAGACAAGAGGATTAAAAGCACTGGGGCATGGAGGTTCTTGTGGGAGTCTTCGATaGAGCTGCTGTAGACCCAGA | + |
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Preference number: 4 (lower is better) Translates to: KQGCTETRGLKALGHGGSCGSLR*SCCRPR Trigger: TCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACA...AGAACCTCCATGCCCCAGTGCTTTTAATCCTCTTGTCTCTGTACAGCCCTGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010249.7 ENSMUST00000237634.2 |
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| CDS-3UTR TCA 90 bp | AAGCCAGACACCACAATATCAGATTCACCCAAGAAGAGGTTTCAGCAGTATGTAGAGTGCCAAGATGCCTaGAGCCCCAGCCACGAAGTA | + |
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Preference number: 4 (lower is better) Translates to: KPDTTISDSPKKRFQQYVECQDA*SPSHEV Trigger: TACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTC...TACATACTGCTGAAACCTCTTCTTGGGTGAATCTGATATTGTGGTGTCTGGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| CDS-3UTR GCA 90 bp | TATAAACAGGGCTGTACAGAGACAAGAGGATTAAAAGCACTGGGGCATGGAGGTAGAGGAGCCATTGAGTaGAGCCACACCATACAAGGG | + |
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Preference number: 4 (lower is better) Translates to: YKQGCTETRGLKALGHGGRGAIE*SHTIQG Trigger: CCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCT...ACCTCCATGCCCCAGTGCTTTTAATCCTCTTGTCTCTGTACAGCCCTGTTTATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010249.7 |
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| CDS-3UTR GCA 90 bp | AGTATACAGGCAGACACTAAGATCAGGAAGATGGCTGTAGCTGAGATGGCCAAATGTGGGAGTCTTCGATaGAGCTGCTGTAGACCCAGA | + |
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Preference number: 4 (lower is better) Translates to: SIQADTKIRKMAVAEMAKCGSLR*SCCRPR Trigger: TCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACA...TTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237634.2 |
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| CDS-3UTR CCA 90 bp | AAACAGGGCTGTACAGAGACAAGAGGATTAAAAGCACTGGGGCATGGAGGTTCTCCTATAGAACCTCTGTaGGAGTCTTCGATGCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: KQGCTETRGLKALGHGGSPIEPL*ESSMQL Trigger: CAGCTGCATCGAAGACTCCCACAGAGGTTCTATAGG...AGAACCTCCATGCCCCAGTGCTTTTAATCCTCTTGTCTCTGTACAGCCCTGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010249.7 |
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| CDS-3UTR TCA 90 bp | AAGGAGAAAACTGAGGTTTCTAATATAAACAGGGCTGTACAGAGACAAGAGGATGAGTGCCAAGATGCCTaGAGCCCCAGCCACGAAGTA | + |
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Preference number: 4 (lower is better) Translates to: KEKTEVSNINRAVQRQEDECQDA*SPSHEV Trigger: TACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTC...ATCCTCTTGTCTCTGTACAGCCCTGTTTATATTAGAAACCTCAGTTTTCTCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010249.7 ENSMUST00000237634.2 |
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| CDS-3UTR GCA 90 bp | AAACAGGGCTGTACAGAGACAAGAGGATTAAAAGCACTGGGGCATGGAGGTTCTTGCAGAAAGAATTGGTaGCAAATCGAAGTATACAGG | + |
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Preference number: 4 (lower is better) Translates to: KQGCTETRGLKALGHGGSCRKNW*QIEVYR Trigger: CCTGTATACTTCGATTTGGCACCAATTCTTTCTGCA...AGAACCTCCATGCCCCAGTGCTTTTAATCCTCTTGTCTCTGTACAGCCCTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010249.7 |
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| CDS-3UTR TCA 90 bp | AAGTTTAAGGAGAAAACTGAGGTTTCTAATATAAACAGGGCTGTACAGAGACAAACAGGAAGGCGGCAGTaGAGAGCAAGAGCTCAACTC | + |
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Preference number: 4 (lower is better) Translates to: KFKEKTEVSNINRAVQRQTGRRQ*RARAQL Trigger: GAGTTGAGCTCTTGCTCTTCACTGCCGCCTTCCTGT...TTGTCTCTGTACAGCCCTGTTTATATTAGAAACCTCAGTTTTCTCCTTAAACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010249.7 ENSMUST00000237634.2 |
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| CDS-3UTR CCA 90 bp | TATAAACAGGGCTGTACAGAGACAAGAGGATTAAAAGCACTGGGGCATGGAGGTAATTGCAGAAAGAATTaGTGCCAAATCGAAGTATAC | + |
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Preference number: 4 (lower is better) Translates to: YKQGCTETRGLKALGHGGNCRKN*CQIEVY Trigger: GTATACTTCGATTTGGCACCAATTCTTTCTGCAATT...ACCTCCATGCCCCAGTGCTTTTAATCCTCTTGTCTCTGTACAGCCCTGTTTATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010249.7 |
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| CDS-3UTR CCA 90 bp | AAGTTTAAGGAGAAAACTGAGGTTTCTAATATAAACAGGGCTGTACAGAGACAACCCCTCTCTTGGGGCTaGTATGATGTGGCTTTAAAC | + |
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Preference number: 4 (lower is better) Translates to: KFKEKTEVSNINRAVQRQPLSWG*YDVALN Trigger: GTTTAAAGCCACATCATACCAGCCCCAAGAGAGGGG...TTGTCTCTGTACAGCCCTGTTTATATTAGAAACCTCAGTTTTCTCCTTAAACTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000010249.7 |
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| CDS-3UTR GCA 90 bp | AAGTTTAAGGAGAAAACTGAGGTTTCTAATATAAACAGGGCTGTACAGAGACAAAGTCTTCGATGCAGCTaGTGTAGACCCAGAAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: KFKEKTEVSNINRAVQRQSLRCS*CRPRRR Trigger: TCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACT...TTGTCTCTGTACAGCCCTGTTTATATTAGAAACCTCAGTTTTCTCCTTAAACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010249.7 ENSMUST00000237634.2 |
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| CDS-3UTR GCA 90 bp | AAGTTTAAGGAGAAAACTGAGGTTTCTAATATAAACAGGGCTGTACAGAGACAAGCTTTAAACTTGCACTaGATGGCCTGGAGCAGCAAA | + |
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Preference number: 4 (lower is better) Translates to: KFKEKTEVSNINRAVQRQALNLH*MAWSSK Trigger: TTTGCTGCTCCAGGCCATGCAGTGCAAGTTTAAAGC...TTGTCTCTGTACAGCCCTGTTTATATTAGAAACCTCAGTTTTCTCCTTAAACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010249.7 |
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| CDS-3UTR CCA 90 bp | AAGTTTAAGGAGAAAACTGAGGTTTCTAATATAAACAGGGCTGTACAGAGACAAGTCCATGAGGTTTTCTaGGCTTCAGAGCAGCTAATT | + |
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Preference number: 4 (lower is better) Translates to: KFKEKTEVSNINRAVQRQVHEVF*ASEQLI Trigger: AATTAGCTGCTCTGAAGCCCAGAAAACCTCATGGAC...TTGTCTCTGTACAGCCCTGTTTATATTAGAAACCTCAGTTTTCTCCTTAAACTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010249.7 |
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| CDS TCA 90 bp | AGAGGGAAGGGGCTGAGGGACCTAACAAGGCCAGAGAGGAGCCATTaGGTGCAGCCACACCATACAAGGGACAGTTACCACCAAAGGAGC | + |
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Preference number: 5 (lower is better) Translates to: RGKGLRDLTRPERSH*VQPHHTRDSYHQRS Trigger: GCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010249.7 |
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| CDS-3UTR CAA 90 bp | TATAAACAGGGCTGTACAGAGACAAGAGGATTAAAAGCACTGGGGCATGGAGGTCTCAGAGCTCCACTCTaGGTCACCCCTCTCTTGGGG | + |
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Preference number: 5 (lower is better) Translates to: YKQGCTETRGLKALGHGGLRAPL*VTPLLG Trigger: CCCCAAGAGAGGGGTGACCAAGAGTGGAGCTCTGAG...ACCTCCATGCCCCAGTGCTTTTAATCCTCTTGTCTCTGTACAGCCCTGTTTATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000010249.7 |
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| CDS-3UTR CAA 90 bp | AAGGAGAAAACTGAGGTTTCTAATATAAACAGGGCTGTACAGAGACAAGAGGATGCCAGAGAGGAGCCATaGAGTGCAGCCACACCATAC | + |
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Preference number: 5 (lower is better) Translates to: KEKTEVSNINRAVQRQEDAREEP*SAATPY Trigger: GTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGC...ATCCTCTTGTCTCTGTACAGCCCTGTTTATATTAGAAACCTCAGTTTTCTCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010249.7 |
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| CDS-3UTR CAA 90 bp | TATAAACAGGGCTGTACAGAGACAAGAGGATTAAAAGCACTGGGGCATGGAGGTGAATTGCAGAAAGAATaGGTGCCAAATCGAAGTATA | + |
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Preference number: 5 (lower is better) Translates to: YKQGCTETRGLKALGHGGELQKE*VPNRSI Trigger: TATACTTCGATTTGGCACCAATTCTTTCTGCAATTC...ACCTCCATGCCCCAGTGCTTTTAATCCTCTTGTCTCTGTACAGCCCTGTTTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010249.7 |
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| CDS TCA 72 bp | TCGCGGCCGCCAAAGCCCCGCACAGGAAGGCGGCAGTaGAGAGCAAGAGCTCAACTCGCTGCAACCAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: SRPPKPRTGRRQ*RARAQLAATRA Trigger: TGCCCTGGTTGCAGCGAGTTGAGCTCTTGCTCTTCACTGCCGCCTTCCTGTGCGGGGCTTTGGCGGCCGCGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010249.7 ENSMUST00000237634.2 |
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| CDS CCA 72 bp | ACACCATACAAGGGACAGTTACCACCAAAGGAGCCCTaGGTCCGGGTCAGCGTCGCGGCCGCCAAAGCCCCG | + |
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Preference number: 6 (lower is better) Translates to: TPYKGQLPPKEP*VRVSVAAAKAP Trigger: CGGGGCTTTGGCGGCCGCGACGCTGACCCGGACCCAGGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010249.7 |
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| CDS TCA 72 bp | GGGCTGAGGGACCTAACAAGGCCAGAGAGGAGCCATTaGGTGCAGCCACACCATACAAGGGACAGTTACCAC | + |
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Preference number: 6 (lower is better) Translates to: GLRDLTRPERSH*VQPHHTRDSYH Trigger: GTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010249.7 |
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| CDS GCA 72 bp | AGAAGAAGAGAAGCAGAAGGCAGTAGAGTGCCAAGATaGCTGAAGCCCCAGCCACGAAGTAGCAGAGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: RRREAEGSRVPR*LKPQPRSSRGK Trigger: CTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010249.7 ENSMUST00000237634.2 |
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