RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMEM178B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000057716

Ensembl transcript IDs: ENSMUST00000061740.8, ENSMUST00000180886.3, ENSMUST00000239008.2

Found 107 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTGGTGTCCTCTCCTGTTGGCCCAGAGTGTGGCACTTCCTTCTCTaGATCTGTGTCGCTTCAGACCACTGCCTCTGTCCCTTCCAGGTC +
Preference number: 1 (lower is better)
Translates to: GGVLSCWPRVWHFLL*ICVASDHCLCPFQV
Trigger: GACCTGGAAGGGACAGAGGCAGTGGTCTGAAGCGACACAGATTCAGAGAAGGAAGTGCCACACTCTGGGCCAACAGGAGAGGACACCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR TCA 90 bp GGTAACCATGAGCTGTTCCTGCCCTGTGGCATTCACAGCTCTGGCTaGCTTCTTCACTTGCCAGCACCCAGTGCGAAATTTGCTCAGGTG +
Preference number: 1 (lower is better)
Translates to: GNHELFLPCGIHSSG*LLHLPAPSAKFAQV
Trigger: CACCTGAGCAAATTTCGCACTGGGTGCTGGCAAGTGAAGAAGTCAGCCAGAGCTGTGAATGCCACAGGGCAGGAACAGCTCATGGTTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR GCA 90 bp TGGCATTCACAGCTCTGGCTGACTTCTTCACTTGCCAGCACCCAGTaGGAAATTTGCTCAGGTGAGCCTGAGATACCTGGACGGCCTTGT +
Preference number: 1 (lower is better)
Translates to: WHSQLWLTSSLASTQ*EICSGEPEIPGRPC
Trigger: ACAAGGCCGTCCAGGTATCTCAGGCTCACCTGAGCAAATTTCGCACTGGGTGCTGGCAAGTGAAGAAGTCAGCCAGAGCTGTGAATGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR TCA 90 bp AGGAGCAGACGTCCAGTGACAAAGGACAGCCCCCACAGTGGGGAGTaGAGGTCTTGTTTGGTATACGTACTCGCACATCAGCAACCAGAA +
Preference number: 1 (lower is better)
Translates to: RSRRPVTKDSPHSGE*RSCLVYVLAHQQPE
Trigger: TTCTGGTTGCTGATGTGCGAGTACGTATACCAAACAAGACCTTCACTCCCCACTGTGGGGGCTGTCCTTTGTCACTGGACGTCTGCTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR GCA 90 bp ACACACACACACACTCACTTTTGTCTCTCTCCAGGGATCTGCAGCTaGTGCATTGGCACCCCTGAAGGCCTGCCCTTCAAGATAATTCCC +
Preference number: 1 (lower is better)
Translates to: THTHTHFCLSPGICS*CIGTPEGLPFKIIP
Trigger: GGGAATTATCTTGAAGGGCAGGCCTTCAGGGGTGCCAATGCAGCAGCTGCAGATCCCTGGAGAGAGACAAAAGTGAGTGTGTGTGTGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR TCA 90 bp ACCACTGCCTCTGTCCCTTCCAGGTCACCACCACATCCTTACAAGTaGCAAGGATCAAGATGCCTGTGGTGGCTTTCACTCTGTCTTGAG +
Preference number: 1 (lower is better)
Translates to: TTASVPSRSPPHPYK*QGSRCLWWLSLCLE
Trigger: CTCAAGACAGAGTGAAAGCCACCACAGGCATCTTGATCCTTGTCACTTGTAAGGATGTGGTGGTGACCTGGAAGGGACAGAGGCAGTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CCA 90 bp CTTGCGGAGTTCCAGAACCATACTGTGAGGTACCACAGGGTCCTGTaGCCCAGTAGTTTTGTTCTTGGTTTGCCCTCTGGGAATTTCAGC +
Preference number: 1 (lower is better)
Translates to: LAEFQNHTVRYHRVL*PSSFVLGLPSGNFS
Trigger: GCTGAAATTCCCAGAGGGCAAACCAAGAACAAAACTACTGGGCCACAGGACCCTGTGGTACCTCACAGTATGGTTCTGGAACTCCGCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CCA 90 bp CTAGAAAAGGAGCAGACGTCCAGTGACAAAGGACAGCCCCCACAGTaGGGAGTGAAGGTCTTGTTTGGTATACGTACTCGCACATCAGCA +
Preference number: 1 (lower is better)
Translates to: LEKEQTSSDKGQPPQ*GVKVLFGIRTRTSA
Trigger: TGCTGATGTGCGAGTACGTATACCAAACAAGACCTTCACTCCCCACTGTGGGGGCTGTCCTTTGTCACTGGACGTCTGCTCCTTTTCTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR GCA 90 bp CACTTTTCCCATCTTGGACATGAGGCAACACAAAGTCTGGTGAGATaGAGGTGCCTGAGCCAACTCAACTCTACCTTGGCACTGGCATCA +
Preference number: 1 (lower is better)
Translates to: HFSHLGHEATQSLVR*RCLSQLNSTLALAS
Trigger: TGATGCCAGTGCCAAGGTAGAGTTGAGTTGGCTCAGGCACCTGCATCTCACCAGACTTTGTGTTGCCTCATGTCCAAGATGGGAAAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CCA 90 bp CTGAGATACCTGGACGGCCTTGTCAGTTTGGATGGCACCTCAGTTTaGGTGCTAGCCTCTAAGATAGATAGCTATTTTGGGATTCATGGC +
Preference number: 1 (lower is better)
Translates to: LRYLDGLVSLDGTSV*VLASKIDSYFGIHG
Trigger: GCCATGAATCCCAAAATAGCTATCTATCTTAGAGGCTAGCACCCAAACTGAGGTGCCATCCAAACTGACAAGGCCGTCCAGGTATCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CCA 90 bp GAAATCATGAAGCCAAAGTCAAAAACGGATGAGAGAGCCACAGGATaGGGACACTTTTCCCATCTTGGACATGAGGCAACACAAAGTCTG +
Preference number: 1 (lower is better)
Translates to: EIMKPKSKTDERATG*GHFSHLGHEATQSL
Trigger: CAGACTTTGTGTTGCCTCATGTCCAAGATGGGAAAAGTGTCCCCATCCTGTGGCTCTCTCATCCGTTTTTGACTTTGGCTTCATGATTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR TCA 90 bp CACACACACACACACACACACACACACACACACAGTGCACCAAAATaGCACACACTAAGAGAGACCCACATTGAAATCCATCAGATATTT +
Preference number: 1 (lower is better)
Translates to: HTHTHTHTHTHSAPK*HTLRETHIEIHQIF
Trigger: AAATATCTGATGGATTTCAATGTGGGTCTCTCTTAGTGTGTGTCATTTTGGTGCACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR TCA 90 bp TTTAATGATTTCCCTTATCATAGAATATGCCCTTTGTCTCTAAAATaGTCCTTAGAAATCTCAGTGAGACGGGGAGGTCTCCGTGAGGGG +
Preference number: 1 (lower is better)
Translates to: FNDFPYHRICPLSLK*SLEISVRRGGLREG
Trigger: CCCCTCACGGAGACCTCCCCGTCTCACTGAGATTTCTAAGGATCATTTTAGAGACAAAGGGCATATTCTATGATAAGGGAAATCATTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR GCA 90 bp CAAATTATAAAGTCCCACACTCATGAAATATCCACCACGTGTACATaGACACATGTGTGGACATACACACACACATCAAACACACACACA +
Preference number: 1 (lower is better)
Translates to: QIIKSHTHEISTTCT*THVWTYTHTSNTHT
Trigger: TGTGTGTGTGTTTGATGTGTGTGTGTATGTCCACACATGTGTGCATGTACACGTGGTGGATATTTCATGAGTGTGGGACTTTATAATTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CAA 90 bp CCGAGTGGTTGGCAGAGTCTCCAAAGCAGATCTTTTCTGCAGCTGTaGAGCTCCCCTTCTGCTTGGCTGACCATGGCTGTGCCAGCTCAG +
Preference number: 2 (lower is better)
Translates to: PSGWQSLQSRSFLQL*SSPSAWLTMAVPAQ
Trigger: CTGAGCTGGCACAGCCATGGTCAGCCAAGCAGAAGGGGAGCTCAACAGCTGCAGAAAAGATCTGCTTTGGAGACTCTGCCAACCACTCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR TCA 90 bp CTTCACTTGCCAGCACCCAGTGCGAAATTTGCTCAGGTGAGCCTGAGATACCTGGTTTCCCCCATGATCTaGTGGCTGGGGTGGTGGTGG +
Preference number: 2 (lower is better)
Translates to: LHLPAPSAKFAQVSLRYLVSPMI*WLGWWW
Trigger: CCACCACCACCCCAGCCATCAGATCATGGGGGAAAC...CAGGTATCTCAGGCTCACCTGAGCAAATTTCGCACTGGGTGCTGGCAAGTGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR GCA 90 bp CTCTGGCTGACTTCTTCACTTGCCAGCACCCAGTGCGAAATTTGCTCAGGTGAGGGGATCTGCAGCTGCTaGATTGGCACCCCTGAAGGC +
Preference number: 2 (lower is better)
Translates to: LWLTSSLASTQCEICSGEGICSC*IGTPEG
Trigger: GCCTTCAGGGGTGCCAATGCAGCAGCTGCAGATCCC...CTCACCTGAGCAAATTTCGCACTGGGTGCTGGCAAGTGAAGAAGTCAGCCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR TCA 90 bp CTCTGGCTGACTTCTTCACTTGCCAGCACCCAGTGCGAAATTTGCTCAGGTGAGCTGCATTGGCACCCCTaGAGGCCTGCCCTTCAAGAT +
Preference number: 2 (lower is better)
Translates to: LWLTSSLASTQCEICSGELHWHP*RPALQD
Trigger: ATCTTGAAGGGCAGGCCTTCAGGGGTGCCAATGCAG...CTCACCTGAGCAAATTTCGCACTGGGTGCTGGCAAGTGAAGAAGTCAGCCAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR TCA 90 bp TTTCTCTTCCACTTGTGCCGTGTCGCTGGTGGGTTGGGAAGGAGCTCAGAACAGAAAGTCAAAAACGGATaGGAGAGCCACAGGATGGGG +
Preference number: 2 (lower is better)
Translates to: FLFHLCRVAGGLGRSSEQKVKNG*ESHRMG
Trigger: CCCCATCCTGTGGCTCTCTCATCCGTTTTTGACTTT...CTGTTCTGAGCTCCTTCCCAACCCACCAGCGACACGGCACAAGTGGAAGAGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR TCA 90 bp ACTGTGAGGTACCACAGGGTCCTGTGGCCCAGTAGTTTTGTTCTTGGTTTGCCCTCCCCTTCCCACCTCTaGAGCATCGTCCAAAGGTTT +
Preference number: 2 (lower is better)
Translates to: TVRYHRVLWPSSFVLGLPSPSHL*SIVQRF
Trigger: AAACCTTTGGACGATGCTTCAGAGGTGGGAAGGGGA...GGGCAAACCAAGAACAAAACTACTGGGCCACAGGACCCTGTGGTACCTCACAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR TCA 90 bp GATATTTCACCTGATAGGAGTTACACACACACACACGCACACGCGCACGCGCACCCCCACAGTGGGGAGTaGAGGTCTTGTTTGGTATAC +
Preference number: 2 (lower is better)
Translates to: DISPDRSYTHTHAHAHAHPHSGE*RSCLVY
Trigger: GTATACCAAACAAGACCTTCACTCCCCACTGTGGGG...GTGCGCGTGCGCGTGTGCGTGTGTGTGTGTGTAACTCCTATCAGGTGAAATATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR GCA 90 bp ACTGTGAGGTACCACAGGGTCCTGTGGCCCAGTAGTTTTGTTCTTGGTTTGCCCTTTCTCTTCCACTTGTaGCGTGTCGCTGGTGGGTTG +
Preference number: 2 (lower is better)
Translates to: TVRYHRVLWPSSFVLGLPFLFHL*RVAGGL
Trigger: CAACCCACCAGCGACACGGCACAAGTGGAAGAGAAA...GGGCAAACCAAGAACAAAACTACTGGGCCACAGGACCCTGTGGTACCTCACAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR TCA 90 bp CTCTGGCTGACTTCTTCACTTGCCAGCACCCAGTGCGAAATTTGCTCAGGTGAGTGGCACTTCCTTCTCTaGATCTGTGTCGCTTCAGAC +
Preference number: 2 (lower is better)
Translates to: LWLTSSLASTQCEICSGEWHFLL*ICVASD
Trigger: GTCTGAAGCGACACAGATTCAGAGAAGGAAGTGCCA...CTCACCTGAGCAAATTTCGCACTGGGTGCTGGCAAGTGAAGAAGTCAGCCAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR GCA 90 bp TGTGGCCCAGTAGTTTTGTTCTTGGTTTGCCCTCTGGGAATTTCAGCTGTACCACTCTCTCCAGGGATCTaGAGCTGCTGCATTGGCACC +
Preference number: 2 (lower is better)
Translates to: CGPVVLFLVCPLGISAVPLSPGI*SCCIGT
Trigger: GGTGCCAATGCAGCAGCTGCAGATCCCTGGAGAGAG...TGGTACAGCTGAAATTCCCAGAGGGCAAACCAAGAACAAAACTACTGGGCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CAA 90 bp ACGTCCAGTGACAAAGGACAGCCCCCACAGTGGGGAGTGAAGGTCTaGTTTGGTATACGTACTCGCACATCAGCAACCAGAAGCAACATT +
Preference number: 2 (lower is better)
Translates to: TSSDKGQPPQWGVKV*FGIRTRTSATRSNI
Trigger: AATGTTGCTTCTGGTTGCTGATGTGCGAGTACGTATACCAAACAAGACCTTCACTCCCCACTGTGGGGGCTGTCCTTTGTCACTGGACGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR CCA 90 bp CTTCACTTGCCAGCACCCAGTGCGAAATTTGCTCAGGTGAGCCTGAGATACCTGTCAAGATGCCTGTGGTaGCTTTCACTCTGTCTTGAG +
Preference number: 2 (lower is better)
Translates to: LHLPAPSAKFAQVSLRYLSRCLW*LSLCLE
Trigger: CTCAAGACAGAGTGAAAGCCACCACAGGCATCTTGA...CAGGTATCTCAGGCTCACCTGAGCAAATTTCGCACTGGGTGCTGGCAAGTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR CCA 90 bp GAGCATCCACTGGAATGTCCTTTAGTTGATGTGGATCTTGCCTCTCAGCATCTTGTGTCGCTGGTGGGTTaGGAAGGAGCTCAGAACAGG +
Preference number: 2 (lower is better)
Translates to: EHPLECPLVDVDLASQHLVSLVG*EGAQNR
Trigger: CCTGTTCTGAGCTCCTTCCCAACCCACCAGCGACAC...AAGATGCTGAGAGGCAAGATCCACATCAACTAAAGGACATTCCAGTGGATGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CAA 90 bp AAATTTGCTCAGGTGAGCCTGAGATACCTGGACGGCCTTGTCAGTTaGGATGGCACCTCAGTTTGGGTGCTAGCCTCTAAGATAGATAGC +
Preference number: 2 (lower is better)
Translates to: KFAQVSLRYLDGLVS*DGTSVWVLASKIDS
Trigger: GCTATCTATCTTAGAGGCTAGCACCCAAACTGAGGTGCCATCCAAACTGACAAGGCCGTCCAGGTATCTCAGGCTCACCTGAGCAAATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR TCA 90 bp TTTCTCTTCCACTTGTGCCGTGTCGCTGGTGGGTTGGGAAGGAGCTCAGAACAGGCTTTCACTCTGTCTTaGGGAAATCATGAAGCCAAA +
Preference number: 2 (lower is better)
Translates to: FLFHLCRVAGGLGRSSEQAFTLS*GNHEAK
Trigger: TTTGGCTTCATGATTTCCTCAAGACAGAGTGAAAGC...CTGTTCTGAGCTCCTTCCCAACCCACCAGCGACACGGCACAAGTGGAAGAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR TCA 90 bp ACACACATCAAACACACACACACACACTCACTTTTGTCTCTCTCCAGGGATCTGACTGAGTTTCCCCCATaGTCTGATGGCTGGGGTGGT +
Preference number: 2 (lower is better)
Translates to: THIKHTHTHSLLSLSRDLTEFPP*SDGWGG
Trigger: ACCACCCCAGCCATCAGATCATGGGGGAAACTCAGT...CAGATCCCTGGAGAGAGACAAAAGTGAGTGTGTGTGTGTGTGTTTGATGTGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR CCA 90 bp ACAGTGGGGAGTGAAGGTCTTGTTTGGTATACGTACTCGCACATCAGCAACCAGGAGAGAGCCACAGGATaGGGACACTTTTCCCATCTT +
Preference number: 2 (lower is better)
Translates to: TVGSEGLVWYTYSHISNQERATG*GHFSHL
Trigger: AAGATGGGAAAAGTGTCCCCATCCTGTGGCTCTCTC...CTGGTTGCTGATGTGCGAGTACGTATACCAAACAAGACCTTCACTCCCCACTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR GCA 90 bp GAGCATCCACTGGAATGTCCTTTAGTTGATGTGGATCTTGCCTCTCAGCATCTTCAAAGTCTGGTGAGATaGAGGTGCCTGAGCCAACTC +
Preference number: 2 (lower is better)
Translates to: EHPLECPLVDVDLASQHLQSLVR*RCLSQL
Trigger: GAGTTGGCTCAGGCACCTGCATCTCACCAGACTTTG...AAGATGCTGAGAGGCAAGATCCACATCAACTAAAGGACATTCCAGTGGATGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR CCA 90 bp CTTCACTTGCCAGCACCCAGTGCGAAATTTGCTCAGGTGAGCCTGAGATACCTGATAATTCCCAGTTCTTaGGCCTCCATAATGGGTCAA +
Preference number: 2 (lower is better)
Translates to: LHLPAPSAKFAQVSLRYLIIPSS*ASIMGQ
Trigger: TTGACCCATTATGGAGGCCCAAGAACTGGGAATTAT...CAGGTATCTCAGGCTCACCTGAGCAAATTTCGCACTGGGTGCTGGCAAGTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR CCA 90 bp GATATTTCACCTGATAGGAGTTACACACACACACACGCACACGCGCACGCGCACAGTGAAGGTCTTGTTTaGTATACGTACTCGCACATC +
Preference number: 2 (lower is better)
Translates to: DISPDRSYTHTHAHAHAHSEGLV*YTYSHI
Trigger: GATGTGCGAGTACGTATACCAAACAAGACCTTCACT...GTGCGCGTGCGCGTGTGCGTGTGTGTGTGTGTAACTCCTATCAGGTGAAATATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR GCA 90 bp TGTCTTGAACTTCCAAAAATTAGTGGACTAAATCTTGCGGAGTTCCAGAACCATGTCGCTTCAGACCACTaGCTCTGTCCCTTCCAGGTC +
Preference number: 2 (lower is better)
Translates to: CLELPKISGLNLAEFQNHVASDH*LCPFQV
Trigger: GACCTGGAAGGGACAGAGGCAGTGGTCTGAAGCGAC...ATGGTTCTGGAACTCCGCAAGATTTAGTCCACTAATTTTTGGAAGTTCAAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR CCA 90 bp ACAGTGGGGAGTGAAGGTCTTGTTTGGTATACGTACTCGCACATCAGCAACCAGAACTCAACTCTACCTTaGCACTGGCATCATCTTGAT +
Preference number: 2 (lower is better)
Translates to: TVGSEGLVWYTYSHISNQNSTLP*HWHHLD
Trigger: ATCAAGATGATGCCAGTGCCAAGGTAGAGTTGAGTT...CTGGTTGCTGATGTGCGAGTACGTATACCAAACAAGACCTTCACTCCCCACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR TCA 90 bp TGTGGCCCAGTAGTTTTGTTCTTGGTTTGCCCTCTGGGAATTTCAGCTGTACCAGTCTTGAGGAAATCATaGAGCCAAAGTCAAAAACGG +
Preference number: 2 (lower is better)
Translates to: CGPVVLFLVCPLGISAVPVLRKS*SQSQKR
Trigger: CCGTTTTTGACTTTGGCTTCATGATTTCCTCAAGAC...TGGTACAGCTGAAATTCCCAGAGGGCAAACCAAGAACAAAACTACTGGGCCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR GCA 90 bp TGTCTTGAACTTCCAAAAATTAGTGGACTAAATCTTGCGGAGTTCCAGAACCATCTGGTGAGATGCAGGTaGCTGAGCCAACTCAACTCT +
Preference number: 2 (lower is better)
Translates to: CLELPKISGLNLAEFQNHLVRCR*LSQLNS
Trigger: AGAGTTGAGTTGGCTCAGGCACCTGCATCTCACCAG...ATGGTTCTGGAACTCCGCAAGATTTAGTCCACTAATTTTTGGAAGTTCAAGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR CCA 90 bp GAGCATCCACTGGAATGTCCTTTAGTTGATGTGGATCTTGCCTCTCAGCATCTTCATCGTCCAAAGGTTTaGCCACAAAGAGAAAACTTC +
Preference number: 2 (lower is better)
Translates to: EHPLECPLVDVDLASQHLHRPKV*PQRENF
Trigger: GAAGTTTTCTCTTTGTGGCCAAACCTTTGGACGATG...AAGATGCTGAGAGGCAAGATCCACATCAACTAAAGGACATTCCAGTGGATGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR TCA 90 bp TACATAATATCATACAAACTTGAGCGCATGGGGCATGGAGGTGCTCTCTCTGCATGTGGTTACATTCTATaGACTCAAGGGACTGAGTTT +
Preference number: 2 (lower is better)
Translates to: YIISYKLERMGHGGALSACGYIL*TQGTEF
Trigger: AAACTCAGTCCCTTGAGTTCATAGAATGTAACCACA...TGCAGAGAGAGCACCTCCATGCCCCATGCGCTCAAGTTTGTATGATATTATGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR CCA 90 bp ACACACATCAAACACACACACACACACTCACTTTTGTCTCTCTCCAGGGATCTGATGGCCTCAAAGATGTaGTTACATTCTATGAACTCA +
Preference number: 2 (lower is better)
Translates to: THIKHTHTHSLLSLSRDLMASKM*LHSMNS
Trigger: TGAGTTCATAGAATGTAACCACATCTTTGAGGCCAT...CAGATCCCTGGAGAGAGACAAAAGTGAGTGTGTGTGTGTGTGTTTGATGTGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR GCA 90 bp TGTCTTGAACTTCCAAAAATTAGTGGACTAAATCTTGCGGAGTTCCAGAACCATACACCTATTCACATGTaGACACATGTGTGTGTGTGC +
Preference number: 2 (lower is better)
Translates to: CLELPKISGLNLAEFQNHTPIHM*THVCVC
Trigger: GCACACACACACATGTGTGCACATGTGAATAGGTGT...ATGGTTCTGGAACTCCGCAAGATTTAGTCCACTAATTTTTGGAAGTTCAAGACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR GCA 72 bp CACACTCACTTTTGTCTCTCTCCAGGGATCTGCAGCTaGTGCATTGGCACCCCTGAAGGCCTGCCCTTCAAG +
Preference number: 3 (lower is better)
Translates to: HTHFCLSPGICS*CIGTPEGLPFK
Trigger: CTTGAAGGGCAGGCCTTCAGGGGTGCCAATGCAGCAGCTGCAGATCCCTGGAGAGAGACAAAAGTGAGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CCA 72 bp GCAGCATTTTCTGACACCAGCTTGCCCCTGTTCACCTaGTATGCCTACACTCCGGGCGCTCACATGCAAGGT +
Preference number: 3 (lower is better)
Translates to: AAFSDTSLPLFT*YAYTPGAHMQG
Trigger: ACCTTGCATGTGAGCGCCCGGAGTGTAGGCATACCAGGTGAACAGGGGCAAGCTGGTGTCAGAAAATGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR GCA 72 bp ACCAGCAGGGTTCCCAAGGTAACCATGAGCTGTTCCTaGCCTGTGGCATTCACAGCTCTGGCTGACTTCTTC +
Preference number: 3 (lower is better)
Translates to: TSRVPKVTMSCS*PVAFTALADFF
Trigger: GAAGAAGTCAGCCAGAGCTGTGAATGCCACAGGGCAGGAACAGCTCATGGTTACCTTGGGAACCCTGCTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CCA 72 bp GGTCTGTTTTCTCTTCCACTTGTGCCGTGTCGCTGGTaGGTTGGGAAGGAGCTCAGAACAGGAAGAGCAGAG +
Preference number: 3 (lower is better)
Translates to: GLFSLPLVPCRW*VGKELRTGRAE
Trigger: CTCTGCTCTTCCTGTTCTGAGCTCCTTCCCAACCCACCAGCGACACGGCACAAGTGGAAGAGAAAACAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CCA 72 bp GACAGAGCACGTGGGGGAGAAAGTCTGCCGAGTGGTTaGCAGAGTCTCCAAAGCAGATCTTTTCTGCAGCTG +
Preference number: 3 (lower is better)
Translates to: DRARGGESLPSG*QSLQSRSFLQL
Trigger: CAGCTGCAGAAAAGATCTGCTTTGGAGACTCTGCCAACCACTCGGCAGACTTTCTCCCCCACGTGCTCTGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR CAA 90 bp CTCTGGCTGACTTCTTCACTTGCCAGCACCCAGTGCGAAATTTGCTCAGGTGAGGACGGCCTTGTCAGTTaGGATGGCACCTCAGTTTGG +
Preference number: 3 (lower is better)
Translates to: LWLTSSLASTQCEICSGEDGLVS*DGTSVW
Trigger: CCAAACTGAGGTGCCATCCAAACTGACAAGGCCGTC...CTCACCTGAGCAAATTTCGCACTGGGTGCTGGCAAGTGAAGAAGTCAGCCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR TCA 72 bp CGTCCAGTGACAAAGGACAGCCCCCACAGTGGGGAGTaGAGGTCTTGTTTGGTATACGTACTCGCACATCAG +
Preference number: 3 (lower is better)
Translates to: RPVTKDSPHSGE*RSCLVYVLAHQ
Trigger: CTGATGTGCGAGTACGTATACCAAACAAGACCTTCACTCCCCACTGTGGGGGCTGTCCTTTGTCACTGGACG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR GCA 72 bp GGACATGAGGCAACACAAAGTCTGGTGAGATGCAGGTaGCTGAGCCAACTCAACTCTACCTTGGCACTGGCA +
Preference number: 3 (lower is better)
Translates to: GHEATQSLVRCR*LSQLNSTLALA
Trigger: TGCCAGTGCCAAGGTAGAGTTGAGTTGGCTCAGGCACCTGCATCTCACCAGACTTTGTGTTGCCTCATGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR GCA 72 bp CTGACTTCTTCACTTGCCAGCACCCAGTGCGAAATTTaGTCAGGTGAGCCTGAGATACCTGGACGGCCTTGT +
Preference number: 3 (lower is better)
Translates to: LTSSLASTQCEI*SGEPEIPGRPC
Trigger: ACAAGGCCGTCCAGGTATCTCAGGCTCACCTGAGCAAATTTCGCACTGGGTGCTGGCAAGTGAAGAAGTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR GCA 72 bp CAGCTCTGGCTGACTTCTTCACTTGCCAGCACCCAGTaGGAAATTTGCTCAGGTGAGCCTGAGATACCTGGA +
Preference number: 3 (lower is better)
Translates to: QLWLTSSLASTQ*EICSGEPEIPG
Trigger: TCCAGGTATCTCAGGCTCACCTGAGCAAATTTCGCACTGGGTGCTGGCAAGTGAAGAAGTCAGCCAGAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CCA 72 bp AGATCTTTTCTGCAGCTGTTGAGCTCCCCTTCTGCTTaGCTGACCATGGCTGTGCCAGCTCAGGATTCTCTC +
Preference number: 3 (lower is better)
Translates to: RSFLQLLSSPSA*LTMAVPAQDSL
Trigger: GAGAGAATCCTGAGCTGGCACAGCCATGGTCAGCCAAGCAGAAGGGGAGCTCAACAGCTGCAGAAAAGATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CCA 72 bp GACAGACAGAGCACGTGGGGGAGAAAGTCTGCCGAGTaGTTGGCAGAGTCTCCAAAGCAGATCTTTTCTGCA +
Preference number: 3 (lower is better)
Translates to: DRQSTWGRKSAE*LAESPKQIFSA
Trigger: TGCAGAAAAGATCTGCTTTGGAGACTCTGCCAACCACTCGGCAGACTTTCTCCCCCACGTGCTCTGTCTGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR TCA 72 bp AGCCACAGGATGGGGACACTTTTCCCATCTTGGACATaGGGCAACACAAAGTCTGGTGAGATGCAGGTGCCT +
Preference number: 3 (lower is better)
Translates to: SHRMGTLFPSWT*GNTKSGEMQVP
Trigger: AGGCACCTGCATCTCACCAGACTTTGTGTTGCCTCATGTCCAAGATGGGAAAAGTGTCCCCATCCTGTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CCA 72 bp TTCCAGAACCATACTGTGAGGTACCACAGGGTCCTGTaGCCCAGTAGTTTTGTTCTTGGTTTGCCCTCTGGG +
Preference number: 3 (lower is better)
Translates to: FQNHTVRYHRVL*PSSFVLGLPSG
Trigger: CCCAGAGGGCAAACCAAGAACAAAACTACTGGGCCACAGGACCCTGTGGTACCTCACAGTATGGTTCTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR CAA 90 bp ACACACATCAAACACACACACACACACTCACTTTTGTCTCTCTCCAGGGATCTGCGTGTCGCTGGTGGGTaGGGAAGGAGCTCAGAACAG +
Preference number: 3 (lower is better)
Translates to: THIKHTHTHSLLSLSRDLRVAGG*GRSSEQ
Trigger: CTGTTCTGAGCTCCTTCCCAACCCACCAGCGACACG...CAGATCCCTGGAGAGAGACAAAAGTGAGTGTGTGTGTGTGTGTTTGATGTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR TCA 72 bp TCTGTCCCTTCCAGGTCACCACCACATCCTTACAAGTaGCAAGGATCAAGATGCCTGTGGTGGCTTTCACTC +
Preference number: 3 (lower is better)
Translates to: SVPSRSPPHPYK*QGSRCLWWLSL
Trigger: GAGTGAAAGCCACCACAGGCATCTTGATCCTTGTCACTTGTAAGGATGTGGTGGTGACCTGGAAGGGACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR GCA 72 bp CATCTTGGACATGAGGCAACACAAAGTCTGGTGAGATaGAGGTGCCTGAGCCAACTCAACTCTACCTTGGCA +
Preference number: 3 (lower is better)
Translates to: HLGHEATQSLVR*RCLSQLNSTLA
Trigger: TGCCAAGGTAGAGTTGAGTTGGCTCAGGCACCTGCATCTCACCAGACTTTGTGTTGCCTCATGTCCAAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR CAA 90 bp CTTCACTTGCCAGCACCCAGTGCGAAATTTGCTCAGGTGAGCCTGAGATACCTGCCAGTAGTTTTGTTCTaGGTTTGCCCTCTGGGAATT +
Preference number: 3 (lower is better)
Translates to: LHLPAPSAKFAQVSLRYLPVVLF*VCPLGI
Trigger: AATTCCCAGAGGGCAAACCAAGAACAAAACTACTGG...CAGGTATCTCAGGCTCACCTGAGCAAATTTCGCACTGGGTGCTGGCAAGTGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR GCA 72 bp AAAGAAAAAGTTAACCACCCAACACCTATTCACATGTaGACACATGTGTGTGTGTGCACCCCACCCACCCCC +
Preference number: 3 (lower is better)
Translates to: KEKVNHPTPIHM*THVCVCTPPTP
Trigger: GGGGGTGGGTGGGGTGCACACACACACATGTGTGCACATGTGAATAGGTGTTGGGTGGTTAACTTTTTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CCA 72 bp CTCCCCTTCCCACCTCTGAAGCATCGTCCAAAGGTTTaGCCACAAAGAGAAAACTTCCTTCTCGGTCTGTTT +
Preference number: 3 (lower is better)
Translates to: LPFPPLKHRPKV*PQRENFLLGLF
Trigger: AAACAGACCGAGAAGGAAGTTTTCTCTTTGTGGCCAAACCTTTGGACGATGCTTCAGAGGTGGGAAGGGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CCA 72 bp AAGCCAAAGTCAAAAACGGATGAGAGAGCCACAGGATaGGGACACTTTTCCCATCTTGGACATGAGGCAACA +
Preference number: 3 (lower is better)
Translates to: KPKSKTDERATG*GHFSHLGHEAT
Trigger: TGTTGCCTCATGTCCAAGATGGGAAAAGTGTCCCCATCCTGTGGCTCTCTCATCCGTTTTTGACTTTGGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR CAA 90 bp TGTGGCCCAGTAGTTTTGTTCTTGGTTTGCCCTCTGGGAATTTCAGCTGTACCAGACACTTTTCCCATCTaGGACATGAGGCAACACAAA +
Preference number: 3 (lower is better)
Translates to: CGPVVLFLVCPLGISAVPDTFPI*DMRQHK
Trigger: TTTGTGTTGCCTCATGTCCAAGATGGGAAAAGTGTC...TGGTACAGCTGAAATTCCCAGAGGGCAAACCAAGAACAAAACTACTGGGCCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR CAA 90 bp GAGCATCCACTGGAATGTCCTTTAGTTGATGTGGATCTTGCCTCTCAGCATCTTGCATCGTCCAAAGGTTaGGCCACAAAGAGAAAACTT +
Preference number: 3 (lower is better)
Translates to: EHPLECPLVDVDLASQHLASSKG*ATKRKL
Trigger: AAGTTTTCTCTTTGTGGCCAAACCTTTGGACGATGC...AAGATGCTGAGAGGCAAGATCCACATCAACTAAAGGACATTCCAGTGGATGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR-3UTR CAA 90 bp TACATAATATCATACAAACTTGAGCGCATGGGGCATGGAGGTGCTCTCTCTGCAGGCACTGGCATCATCTaGATTGAGTTTCATTTTATA +
Preference number: 3 (lower is better)
Translates to: YIISYKLERMGHGGALSAGTGII*IEFHFI
Trigger: TATAAAATGAAACTCAATCAAGATGATGCCAGTGCC...TGCAGAGAGAGCACCTCCATGCCCCATGCGCTCAAGTTTGTATGATATTATGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR TCA 72 bp TTCCCTTATCATAGAATATGCCCTTTGTCTCTAAAATaGTCCTTAGAAATCTCAGTGAGACGGGGAGGTCTC +
Preference number: 3 (lower is better)
Translates to: FPYHRICPLSLK*SLEISVRRGGL
Trigger: GAGACCTCCCCGTCTCACTGAGATTTCTAAGGATCATTTTAGAGACAAAGGGCATATTCTATGATAAGGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
CDS-3UTR GCA 90 bp CTCTGGCTGACTTCTTCACTTGCCAGCACCCAGTGCGAAATTTGCTCAGGTGAGAGCCCTGCCACGTACTaGATAAGGCCTCGGTCCCAG +
Preference number: 4 (lower is better)
Translates to: LWLTSSLASTQCEICSGESPATY*IRPRSQ
Trigger: CTGGGACCGAGGCCTTATGCAGTACGTGGCAGGGCT...CTCACCTGAGCAAATTTCGCACTGGGTGCTGGCAAGTGAAGAAGTCAGCCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CAA 72 bp CAGGTGAGCCTGAGATACCTGGACGGCCTTGTCAGTTaGGATGGCACCTCAGTTTGGGTGCTAGCCTCTAAG +
Preference number: 4 (lower is better)
Translates to: QVSLRYLDGLVS*DGTSVWVLASK
Trigger: CTTAGAGGCTAGCACCCAAACTGAGGTGCCATCCAAACTGACAAGGCCGTCCAGGTATCTCAGGCTCACCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CAA 72 bp CTCATTTGGATGCCAGCAGCATTTTCTGACACCAGCTaGCCCCTGTTCACCTGGTATGCCTACACTCCGGGC +
Preference number: 4 (lower is better)
Translates to: LIWMPAAFSDTS*PLFTWYAYTPG
Trigger: GCCCGGAGTGTAGGCATACCAGGTGAACAGGGGCAAGCTGGTGTCAGAAAATGCTGCTGGCATCCAAATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
CDS-3UTR CCA 90 bp TTTCTCTTCCACTTGTGCCGTGTCGCTGGTGGGTTGGGAAGGAGCTCAGAACAGCCCATGCACAGAACATaGACCATCCATAGCCATGGC +
Preference number: 4 (lower is better)
Translates to: FLFHLCRVAGGLGRSSEQPMHRT*TIHSHG
Trigger: GCCATGGCTATGGATGGTCCATGTTCTGTGCATGGG...CTGTTCTGAGCTCCTTCCCAACCCACCAGCGACACGGCACAAGTGGAAGAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CAA 72 bp TGGCAGAGTCTCCAAAGCAGATCTTTTCTGCAGCTGTaGAGCTCCCCTTCTGCTTGGCTGACCATGGCTGTG +
Preference number: 4 (lower is better)
Translates to: WQSLQSRSFLQL*SSPSAWLTMAV
Trigger: CACAGCCATGGTCAGCCAAGCAGAAGGGGAGCTCAACAGCTGCAGAAAAGATCTGCTTTGGAGACTCTGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CAA 72 bp AGACAGAGCACGTGGGGGAGAAAGTCTGCCGAGTGGTaGGCAGAGTCTCCAAAGCAGATCTTTTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: RQSTWGRKSAEW*AESPKQIFSAA
Trigger: AGCTGCAGAAAAGATCTGCTTTGGAGACTCTGCCAACCACTCGGCAGACTTTCTCCCCCACGTGCTCTGTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
CDS-3UTR TCA 90 bp CCCTTCCAGGTCACCACCACATCCTTACAAGTGACAAGGATCAAGATGCCTGTGCCACTGCCATGCCCATaGAGCCAGCTGTCATTCTAC +
Preference number: 4 (lower is better)
Translates to: PFQVTTTSLQVTRIKMPVPLPCP*SQLSFY
Trigger: GTAGAATGACAGCTGGCTTCATGGGCATGGCAGTGG...CACAGGCATCTTGATCCTTGTCACTTGTAAGGATGTGGTGGTGACCTGGAAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
CDS-3UTR GCA 90 bp CCCTTCCAGGTCACCACCACATCCTTACAAGTGACAAGGATCAAGATGCCTGTGGAGGAAGAGAAGCCCTaGCACGTACTGCATAAGGCC +
Preference number: 4 (lower is better)
Translates to: PFQVTTTSLQVTRIKMPVEEEKP*HVLHKA
Trigger: GGCCTTATGCAGTACGTGGCAGGGCTTCTCTTCCTC...CACAGGCATCTTGATCCTTGTCACTTGTAAGGATGTGGTGGTGACCTGGAAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CAA 72 bp TGTTTTCTCTTCCACTTGTGCCGTGTCGCTGGTGGGTaGGGAAGGAGCTCAGAACAGGAAGAGCAGAGAAGT +
Preference number: 4 (lower is better)
Translates to: CFLFHLCRVAGG*GRSSEQEEQRS
Trigger: ACTTCTCTGCTCTTCCTGTTCTGAGCTCCTTCCCAACCCACCAGCGACACGGCACAAGTGGAAGAGAAAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CAA 72 bp GACAAAGGACAGCCCCCACAGTGGGGAGTGAAGGTCTaGTTTGGTATACGTACTCGCACATCAGCAACCAGA +
Preference number: 4 (lower is better)
Translates to: DKGQPPQWGVKV*FGIRTRTSATR
Trigger: TCTGGTTGCTGATGTGCGAGTACGTATACCAAACAAGACCTTCACTCCCCACTGTGGGGGCTGTCCTTTGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
CDS-3UTR TCA 90 bp ACTGTGAGGTACCACAGGGTCCTGTGGCCCAGTAGTTTTGTTCTTGGTTTGCCCCACACATGTGCACAGTaGAATGATGCAGAAGGTTCC +
Preference number: 4 (lower is better)
Translates to: TVRYHRVLWPSSFVLGLPHTCAQ*NDAEGS
Trigger: GGAACCTTCTGCATCATTTCACTGTGCACATGTGTG...GGGCAAACCAAGAACAAAACTACTGGGCCACAGGACCCTGTGGTACCTCACAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
CDS-3UTR TCA 90 bp GAGCATCCACTGGAATGTCCTTTAGTTGATGTGGATCTTGCCTCTCAGCATCTTATCCATAGCCATGGCTaGTGTCATCCGGGAGTCCGT +
Preference number: 4 (lower is better)
Translates to: EHPLECPLVDVDLASQHLIHSHG*CHPGVR
Trigger: ACGGACTCCCGGATGACATCAGCCATGGCTATGGAT...AAGATGCTGAGAGGCAAGATCCACATCAACTAAAGGACATTCCAGTGGATGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CAA 72 bp TCTCCCCTTCCCACCTCTGAAGCATCGTCCAAAGGTTaGGCCACAAAGAGAAAACTTCCTTCTCGGTCTGTT +
Preference number: 4 (lower is better)
Translates to: SPLPTSEASSKG*ATKRKLPSRSV
Trigger: AACAGACCGAGAAGGAAGTTTTCTCTTTGTGGCCAAACCTTTGGACGATGCTTCAGAGGTGGGAAGGGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CAA 72 bp GGTACCACAGGGTCCTGTGGCCCAGTAGTTTTGTTCTaGGTTTGCCCTCTGGGAATTTCAGCTGTACCAAAA +
Preference number: 4 (lower is better)
Translates to: GTTGSCGPVVLF*VCPLGISAVPK
Trigger: TTTTGGTACAGCTGAAATTCCCAGAGGGCAAACCAAGAACAAAACTACTGGGCCACAGGACCCTGTGGTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
CDS-3UTR TCA 90 bp TGTGGCCCAGTAGTTTTGTTCTTGGTTTGCCCTCTGGGAATTTCAGCTGTACCAATGTGCACAGTGAAATaGTGCAGAAGGTTCCTCCCA +
Preference number: 4 (lower is better)
Translates to: CGPVVLFLVCPLGISAVPMCTVK*CRRFLP
Trigger: TGGGAGGAACCTTCTGCATCATTTCACTGTGCACAT...TGGTACAGCTGAAATTCCCAGAGGGCAAACCAAGAACAAAACTACTGGGCCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
CDS-3UTR TCA 90 bp TACACACACACATCAAACACACACACACACACTCACTTTTGTCTCTCTCCAGGGGTGATAGCTCAAAGTTaGTCCCAGCCACACATGTGC +
Preference number: 4 (lower is better)
Translates to: YTHTSNTHTHTHFCLSPGVIAQS*SQPHMC
Trigger: GCACATGTGTGGCTGGGATCAACTTTGAGCTATCAC...CCCTGGAGAGAGACAAAAGTGAGTGTGTGTGTGTGTGTTTGATGTGTGTGTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
CDS-3UTR TCA 90 bp TGTCTTGAACTTCCAAAAATTAGTGGACTAAATCTTGCGGAGTTCCAGAACCATTCCAGCCAAAGAGGATaGTGGCCACTGCCATGCCCA +
Preference number: 4 (lower is better)
Translates to: CLELPKISGLNLAEFQNHSSQRG*WPLPCP
Trigger: TGGGCATGGCAGTGGCCATCATCCTCTTTGGCTGGA...ATGGTTCTGGAACTCCGCAAGATTTAGTCCACTAATTTTTGGAAGTTCAAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
CDS-3UTR CCA 90 bp TACACACACACATCAAACACACACACACACACTCACTTTTGTCTCTCTCCAGGGGAAGATCCTTGTATTTaGGCCAAAGAAACCCCTCCA +
Preference number: 4 (lower is better)
Translates to: YTHTSNTHTHTHFCLSPGEDPCI*AKETPP
Trigger: TGGAGGGGTTTCTTTGGCCCAAATACAAGGATCTTC...CCCTGGAGAGAGACAAAAGTGAGTGTGTGTGTGTGTGTTTGATGTGTGTGTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
3UTR CAA 72 bp CACAGGGTCCTGTGGCCCAGTAGTTTTGTTCTTGGTTaGCCCTCTGGGAATTTCAGCTGTACCAAAATAATA +
Preference number: 4 (lower is better)
Translates to: HRVLWPSSFVLG*PSGNFSCTKII
Trigger: TATTATTTTGGTACAGCTGAAATTCCCAGAGGGCAAACCAAGAACAAAACTACTGGGCCACAGGACCCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
CDS-3UTR CCA 90 bp TGTCTTGAACTTCCAAAAATTAGTGGACTAAATCTTGCGGAGTTCCAGAACCATCACTGTCCCATTCTCTaGTCTGGATTTAGGGCAGTT +
Preference number: 4 (lower is better)
Translates to: CLELPKISGLNLAEFQNHHCPIL*SGFRAV
Trigger: AACTGCCCTAAATCCAGACCAGAGAATGGGACAGTG...ATGGTTCTGGAACTCCGCAAGATTTAGTCCACTAATTTTTGGAAGTTCAAGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
CDS GCA 90 bp CGGATCACCTTACCTCCCATGAGGAAGAGAAGCCCTGCCACGTACTaGATAAGGCCTCGGTCCCAGCAACAGCCCAGGACGCCGATGATC +
Preference number: 5 (lower is better)
Translates to: RITLPPMRKRSPATY*IRPRSQQQPRTPMI
Trigger: GATCATCGGCGTCCTGGGCTGTTGCTGGGACCGAGGCCTTATGCAGTACGTGGCAGGGCTTCTCTTCCTCATGGGAGGTAAGGTGATCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180886.3
CDS GCA 90 bp ATGCAGAAGGTTCCTCCCATGAGGAAGAGAAGCCCTGCCACGTACTaGATAAGGCCTCGGTCCCAGCAACAGCCCAGGACGCCGATGATC +
Preference number: 5 (lower is better)
Translates to: MQKVPPMRKRSPATY*IRPRSQQQPRTPMI
Trigger: GATCATCGGCGTCCTGGGCTGTTGCTGGGACCGAGGCCTTATGCAGTACGTGGCAGGGCTTCTCTTCCTCATGGGAGGAACCTTCTGCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061740.8
ENSMUST00000239008.2
CDS GCA 90 bp ACAGCCCAGGACGCCGATGATCCAGCCAAAGAGGATGATGGCCACTaGCATGCCCATGAAGCCAGCTGTCATTCTACGAAGATGCAGGGC +
Preference number: 5 (lower is better)
Translates to: TAQDADDPAKEDDGH*HAHEASCHSTKMQG
Trigger: GCCCTGCATCTTCGTAGAATGACAGCTGGCTTCATGGGCATGGCAGTGGCCATCATCCTCTTTGGCTGGATCATCGGCGTCCTGGGCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000180886.3
ENSMUST00000239008.2
CDS GCA 90 bp AGATCTGGTTCGGATCACCTTACCTCCCATGAGGAAGAGAAGCCCTaGCACGTACTGCATAAGGCCTCGGTCCCAGCAACAGCCCAGGAC +
Preference number: 5 (lower is better)
Translates to: RSGSDHLTSHEEEKP*HVLHKASVPATAQD
Trigger: GTCCTGGGCTGTTGCTGGGACCGAGGCCTTATGCAGTACGTGGCAGGGCTTCTCTTCCTCATGGGAGGTAAGGTGATCCGAACCAGATCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180886.3
CDS GCA 90 bp ACAGCCCAGGACGCCGATGATCCAGCCAAAGAGGATGATGGCCACTaGCATGCCCATGAAGCCAGCTGTCATTCTACGAAGATCCTTGTA +
Preference number: 5 (lower is better)
Translates to: TAQDADDPAKEDDGH*HAHEASCHSTKILV
Trigger: TACAAGGATCTTCGTAGAATGACAGCTGGCTTCATGGGCATGGCAGTGGCCATCATCCTCTTTGGCTGGATCATCGGCGTCCTGGGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
CDS CCA 90 bp CCATTCTCTGGTCTGGATTTAGGGCAGTTGGTCCTCGGGACAGGTTaGACAGAGGGGGCCAAGGTACAGAAGAATCCCGAGATTAGTGTG +
Preference number: 5 (lower is better)
Translates to: PFSGLDLGQLVLGTG*TEGAKVQKNPEISV
Trigger: CACACTAATCTCGGGATTCTTCTGTACCTTGGCCCCCTCTGTCCAACCTGTCCCGAGGACCAACTGCCCTAAATCCAGACCAGAGAATGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061740.8
ENSMUST00000239008.2
CDS CCA 90 bp AAGCCAGCTGTCATTCTACGAAGATGCAGGGCGTGCCACTCATCCTaGCGAATGGTCTTCGTGATGTTGAATGTGAGGTTCCTAGGGATG +
Preference number: 5 (lower is better)
Translates to: KPAVILRRCRACHSS*RMVFVMLNVRFLGM
Trigger: CATCCCTAGGAACCTCACATTCAACATCACGAAGACCATTCGCCAGGATGAGTGGCACGCCCTGCATCTTCGTAGAATGACAGCTGGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000180886.3
ENSMUST00000239008.2
CDS-3UTR CAA 90 bp TACACAATGATACCACACACACACACACACACACACACACACACACACACAGTGCTGGATTTAGGGCAGTaGGTCCTCGGGACAGGTTGG +
Preference number: 5 (lower is better)
Translates to: YTMIPHTHTHTHTHTHTVLDLGQ*VLGTGW
Trigger: CCAACCTGTCCCGAGGACCAACTGCCCTAAATCCAG...CACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTATCATTGTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061740.8
CDS TCA 90 bp AATGGTCTTCGTGATGTTGAATGTGAGGTTCCTAGGGATGGTTGCTaGGGAGTAGTGGTACTTGATGTAGGTGCATCTCTCAATTTCTCC +
Preference number: 5 (lower is better)
Translates to: NGLRDVECEVPRDGC*GVVVLDVGASLNFS
Trigger: GGAGAAATTGAGAGATGCACCTACATCAAGTACCACTACTCCTCAGCAACCATCCCTAGGAACCTCACATTCAACATCACGAAGACCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000180886.3
ENSMUST00000239008.2
CDS GCA 72 bp CGAACAGCTGCCGGCGATTCCGGGCCCGGAGGAGTTTaGCCTCCCAGCGGTCCAGGCGCGAGCGGCTGGCGC +
Preference number: 6 (lower is better)
Translates to: RTAAGDSGPGGV*PPSGPGASGWR
Trigger: GCGCCAGCCGCTCGCGCCTGGACCGCTGGGAGGGCAAACTCCTCCGGGCCCGGAATCGCCGGCAGCTGTTCG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000180886.3
ENSMUST00000239008.2
CDS CAA 72 bp GCGAACAGCTGCCGGCGATTCCGGGCCCGGAGGAGTTaGCCCTCCCAGCGGTCCAGGCGCGAGCGGCTGGCG +
Preference number: 6 (lower is better)
Translates to: ANSCRRFRARRS*PSQRSRRERLA
Trigger: CGCCAGCCGCTCGCGCCTGGACCGCTGGGAGGGCAAACTCCTCCGGGCCCGGAATCGCCGGCAGCTGTTCGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000180886.3
ENSMUST00000239008.2
CDS CAA 90 bp GGGCTCATAGCGAACAGCTGCCGGCGATTCCGGGCCCGGAGGAGTTaGCCCTCCCAGCGGTCCAGGCGCGAGCGGCTGGCGCGCAGAGGC +
Preference number: 6 (lower is better)
Translates to: GLIANSCRRFRARRS*PSQRSRRERLARRG
Trigger: GCCTCTGCGCGCCAGCCGCTCGCGCCTGGACCGCTGGGAGGGCAAACTCCTCCGGGCCCGGAATCGCCGGCAGCTGTTCGCTATGAGCCC
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000180886.3
ENSMUST00000239008.2
CDS GCA 72 bp CGGCTGCACTCGTCCGCGGGGCTCATAGCGAACAGCTaGCGGCGATTCCGGGCCCGGAGGAGTTTGCCCTCC +
Preference number: 6 (lower is better)
Translates to: RLHSSAGLIANS*RRFRARRSLPS
Trigger: GGAGGGCAAACTCCTCCGGGCCCGGAATCGCCGGCAGCTGTTCGCTATGAGCCCCGCGGACGAGTGCAGCCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000180886.3
ENSMUST00000239008.2
CDS GCA 72 bp CGTACCAATGGTCGGAGCAGATGGCCACAGCCAACATaGCGAGGGCGCAGAGCGCTAGCGAAAGCCCCGTAT +
Preference number: 6 (lower is better)
Translates to: RTNGRSRWPQPT*RGRRALAKAPY
Trigger: ATACGGGGCTTTCGCTAGCGCTCTGCGCCCTCGGCATGTTGGCTGTGGCCATCTGCTCCGACCATTGGTACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000180886.3
ENSMUST00000239008.2
CDS GCA 72 bp GTTCCTCCCATGAGGAAGAGAAGCCCTGCCACGTACTaGATAAGGCCTCGGTCCCAGCAACAGCCCAGGACG +
Preference number: 6 (lower is better)
Translates to: VPPMRKRSPATY*IRPRSQQQPRT
Trigger: CGTCCTGGGCTGTTGCTGGGACCGAGGCCTTATGCAGTACGTGGCAGGGCTTCTCTTCCTCATGGGAGGAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061740.8
ENSMUST00000239008.2
CDS CCA 72 bp GGAGTTTGCCCTCCCAGCGGTCCAGGCGCGAGCGGCTaGCGCGCAGAGGCAAGTTGTTGTTGTTGTTGTAAA +
Preference number: 6 (lower is better)
Translates to: GVCPPSGPGASG*RAEASCCCCCK
Trigger: TTTACAACAACAACAACAACTTGCCTCTGCGCGCCAGCCGCTCGCGCCTGGACCGCTGGGAGGGCAAACTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000180886.3
ENSMUST00000239008.2
CDS GCA 72 bp TTACCTCCCATGAGGAAGAGAAGCCCTGCCACGTACTaGATAAGGCCTCGGTCCCAGCAACAGCCCAGGACG +
Preference number: 6 (lower is better)
Translates to: LPPMRKRSPATY*IRPRSQQQPRT
Trigger: CGTCCTGGGCTGTTGCTGGGACCGAGGCCTTATGCAGTACGTGGCAGGGCTTCTCTTCCTCATGGGAGGTAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180886.3
CDS GCA 72 bp TCGGATCACCTTACCTCCCATGAGGAAGAGAAGCCCTaGCACGTACTGCATAAGGCCTCGGTCCCAGCAACA +
Preference number: 6 (lower is better)
Translates to: SDHLTSHEEEKP*HVLHKASVPAT
Trigger: TGTTGCTGGGACCGAGGCCTTATGCAGTACGTGGCAGGGCTTCTCTTCCTCATGGGAGGTAAGGTGATCCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180886.3
CDS GCA 72 bp ATGAAGCCAGCTGTCATTCTACGAAGATGCAGGGCGTaGCACTCATCCTGGCGAATGGTCTTCGTGATGTTG +
Preference number: 6 (lower is better)
Translates to: MKPAVILRRCRA*HSSWRMVFVML
Trigger: CAACATCACGAAGACCATTCGCCAGGATGAGTGGCACGCCCTGCATCTTCGTAGAATGACAGCTGGCTTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000180886.3
ENSMUST00000239008.2
CDS TCA 72 bp CGTGATGTTGAATGTGAGGTTCCTAGGGATGGTTGCTaGGGAGTAGTGGTACTTGATGTAGGTGCATCTCTC +
Preference number: 6 (lower is better)
Translates to: RDVECEVPRDGC*GVVVLDVGASL
Trigger: GAGAGATGCACCTACATCAAGTACCACTACTCCTCAGCAACCATCCCTAGGAACCTCACATTCAACATCACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000180886.3
ENSMUST00000239008.2