Pregenerated sensors for TMEM178 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024245Ensembl transcript IDs: ENSMUST00000025092.5
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGATCTCAGGTGCTGACACAACAAGACACCATCAGGACGAGTTCTaGAGATGCTGCATTAAAATCCAACAAGCCTGGCACAGTGACAAG | + |
|
Preference number: 1 (lower is better) Translates to: QISGADTTRHHQDEF*RCCIKIQQAWHSDK Trigger: CTTGTCACTGTGCCAGGCTTGTTGGATTTTAATGCAGCATCTTCAGAACTCGTCCTGATGGTGTCTTGTTGTGTCAGCACCTGAGATCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR CCA 90 bp | AGGGCTGCAGGCAACAGGTTGGAATGTAAAAGACCTCTTTGTGCTTaGAACCCTGATGTGAACTCAGTTCTGCTCCTAATGGAACTCAGA | + |
|
Preference number: 1 (lower is better) Translates to: RAAGNRLECKRPLCA*NPDVNSVLLLMELR Trigger: TCTGAGTTCCATTAGGAGCAGAACTGAGTTCACATCAGGGTTCCAAGCACAAAGAGGTCTTTTACATTCCAACCTGTTGCCTGCAGCCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR GCA 90 bp | AAGAGACACAAGCCAAACAACAGAGAAGACTTCAAACAATGCTGCTaGCTAGCCTTACGGATCAGCTCTTACATGGTTGGTCTGTTTTTC | + |
|
Preference number: 1 (lower is better) Translates to: KRHKPNNREDFKQCC*LALRISSYMVGLFF Trigger: GAAAAACAGACCAACCATGTAAGAGCTGATCCGTAAGGCTAGGCAGCAGCATTGTTTGAAGTCTTCTCTGTTGTTTGGCTTGTGTCTCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR GCA 90 bp | ACAAAGAGACACAAGCCAAACAACAGAGAAGACTTCAAACAATGCTaGTGCCTAGCCTTACGGATCAGCTCTTACATGGTTGGTCTGTTT | + |
|
Preference number: 1 (lower is better) Translates to: TKRHKPNNREDFKQC*CLALRISSYMVGLF Trigger: AAACAGACCAACCATGTAAGAGCTGATCCGTAAGGCTAGGCAGCAGCATTGTTTGAAGTCTTCTCTGTTGTTTGGCTTGTGTCTCTTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR GCA 90 bp | TTAACAAAGAGACACAAGCCAAACAACAGAGAAGACTTCAAACAATaGTGCTGCCTAGCCTTACGGATCAGCTCTTACATGGTTGGTCTG | + |
|
Preference number: 1 (lower is better) Translates to: LTKRHKPNNREDFKQ*CCLALRISSYMVGL Trigger: CAGACCAACCATGTAAGAGCTGATCCGTAAGGCTAGGCAGCAGCATTGTTTGAAGTCTTCTCTGTTGTTTGGCTTGTGTCTCTTTGTTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR-3UTR GCA 90 bp | TCAGTCATCCGGAAAGGGCTGCAGGCAACAGGTTGGAATGTAAAAGACCTCTTTCCCACTCTGCTGCTCTaGTCTGTAGCTGGGCCTTCT | + |
|
Preference number: 2 (lower is better) Translates to: SVIRKGLQATGWNVKDLFPTLLL*SVAGPS Trigger: AGAAGGCCCAGCTACAGAGCAGAGCAGCAGAGTGGG...AAAGAGGTCTTTTACATTCCAACCTGTTGCCTGCAGCCCTTTCCGGATGACTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR CAA 90 bp | GCAGGGTTTCCTGTCAGTCATCCGGAAAGGGCTGCAGGCAACAGGTaGGAATGTAAAAGACCTCTTTGTGCTTGGAACCCTGATGTGAAC | + |
|
Preference number: 2 (lower is better) Translates to: AGFPVSHPERAAGNR*ECKRPLCAWNPDVN Trigger: GTTCACATCAGGGTTCCAAGCACAAAGAGGTCTTTTACATTCCAACCTGTTGCCTGCAGCCCTTTCCGGATGACTGACAGGAAACCCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR CAA 90 bp | CTTCGCCCAATCAGAGCATTGTCAGTAAAGCACTTGAACCCACAGTaGTCTTGTCCTTCGGAAGGTCGGGAAGTTCTGCAGGGTTTCCTG | + |
|
Preference number: 2 (lower is better) Translates to: LRPIRALSVKHLNPQ*SCPSEGREVLQGFL Trigger: CAGGAAACCCTGCAGAACTTCCCGACCTTCCGAAGGACAAGACAACTGTGGGTTCAAGTGCTTTACTGACAATGCTCTGATTGGGCGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR CAA 90 bp | CCCAATCAGAGCATTGTCAGTAAAGCACTTGAACCCACAGTTGTCTaGTCCTTCGGAAGGTCGGGAAGTTCTGCAGGGTTTCCTGTCAGT | + |
|
Preference number: 2 (lower is better) Translates to: PNQSIVSKALEPTVV*SFGRSGSSAGFPVS Trigger: ACTGACAGGAAACCCTGCAGAACTTCCCGACCTTCCGAAGGACAAGACAACTGTGGGTTCAAGTGCTTTACTGACAATGCTCTGATTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR CAA 90 bp | TGCAATTCTTCCCTTCGCCCAATCAGAGCATTGTCAGTAAAGCACTaGAACCCACAGTTGTCTTGTCCTTCGGAAGGTCGGGAAGTTCTG | + |
|
Preference number: 2 (lower is better) Translates to: CNSSLRPIRALSVKH*NPQLSCPSEGREVL Trigger: CAGAACTTCCCGACCTTCCGAAGGACAAGACAACTGTGGGTTCAAGTGCTTTACTGACAATGCTCTGATTGGGCGAAGGGAAGAATTGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR-3UTR TCA 90 bp | TCGCCCAATCAGAGCATTGTCAGTAAAGCACTTGAACCCACAGTTGTCTTGTCCTTGTGCTTGGAACCCTaGTGTGAACTCAGTTCTGCT | + |
|
Preference number: 2 (lower is better) Translates to: SPNQSIVSKALEPTVVLSLCLEP*CELSSA Trigger: AGCAGAACTGAGTTCACATCAGGGTTCCAAGCACAA...GGACAAGACAACTGTGGGTTCAAGTGCTTTACTGACAATGCTCTGATTGGGCGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR-3UTR GCA 90 bp | CATTCACAAATAATGCACAGATCTCAGGTGCTGACACAACAAGACACCATCAGGTCATCCGGAAAGGGCTaGAGGCAACAGGTTGGAATG | + |
|
Preference number: 2 (lower is better) Translates to: HSQIMHRSQVLTQQDTIRSSGKG*RQQVGM Trigger: CATTCCAACCTGTTGCCTGCAGCCCTTTCCGGATGA...CCTGATGGTGTCTTGTTGTGTCAGCACCTGAGATCTGTGCATTATTTGTGAATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR CAA 90 bp | ACAAATGTCCTGCAGTGCAATTCTTCCCTTCGCCCAATCAGAGCATaGTCAGTAAAGCACTTGAACCCACAGTTGTCTTGTCCTTCGGAA | + |
|
Preference number: 2 (lower is better) Translates to: TNVLQCNSSLRPIRA*SVKHLNPQLSCPSE Trigger: TTCCGAAGGACAAGACAACTGTGGGTTCAAGTGCTTTACTGACAATGCTCTGATTGGGCGAAGGGAAGAATTGCACTGCAGGACATTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR CAA 90 bp | CTTACGGATCAGCTCTTACATGGTTGGTCTGTTTTTCTTACGCGTTaGAACTCCAGGACAAAGACAGAGCGTGGACTTCAATTCATGAAA | + |
|
Preference number: 2 (lower is better) Translates to: LTDQLLHGWSVFLTR*NSRTKTERGLQFMK Trigger: TTTCATGAATTGAAGTCCACGCTCTGTCTTTGTCCTGGAGTTCAAACGCGTAAGAAAAACAGACCAACCATGTAAGAGCTGATCCGTAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR-3UTR CCA 90 bp | GAACATTCACAAATAATGCACAGATCTCAGGTGCTGACACAACAAGACACCATCAAAATCCAACAAGCCTaGCACAGTGACAAGAAAATT | + |
|
Preference number: 2 (lower is better) Translates to: EHSQIMHRSQVLTQQDTIKIQQA*HSDKKI Trigger: AATTTTCTTGTCACTGTGCCAGGCTTGTTGGATTTT...GATGGTGTCTTGTTGTGTCAGCACCTGAGATCTGTGCATTATTTGTGAATGTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR GCA 72 bp | CACAGTTGTCTTGTCCTTCGGAAGGTCGGGAAGTTCTaGAGGGTTTCCTGTCAGTCATCCGGAAAGGGCTGC | + |
|
Preference number: 3 (lower is better) Translates to: HSCLVLRKVGKF*RVSCQSSGKGC Trigger: GCAGCCCTTTCCGGATGACTGACAGGAAACCCTGCAGAACTTCCCGACCTTCCGAAGGACAAGACAACTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR CCA 72 bp | CTGTCAGTCATCCGGAAAGGGCTGCAGGCAACAGGTTaGAATGTAAAAGACCTCTTTGTGCTTGGAACCCTG | + |
|
Preference number: 3 (lower is better) Translates to: LSVIRKGLQATG*NVKDLFVLGTL Trigger: CAGGGTTCCAAGCACAAAGAGGTCTTTTACATTCCAACCTGTTGCCTGCAGCCCTTTCCGGATGACTGACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR TCA 72 bp | GGTGCTGACACAACAAGACACCATCAGGACGAGTTCTaGAGATGCTGCATTAAAATCCAACAAGCCTGGCAC | + |
|
Preference number: 3 (lower is better) Translates to: GADTTRHHQDEF*RCCIKIQQAWH Trigger: GTGCCAGGCTTGTTGGATTTTAATGCAGCATCTTCAGAACTCGTCCTGATGGTGTCTTGTTGTGTCAGCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR TCA 72 bp | AGCTCTTACATGGTTGGTCTGTTTTTCTTACGCGTTTaGACTCCAGGACAAAGACAGAGCGTGGACTTCAAT | + |
|
Preference number: 3 (lower is better) Translates to: SSYMVGLFFLRV*TPGQRQSVDFN Trigger: ATTGAAGTCCACGCTCTGTCTTTGTCCTGGAGTTCAAACGCGTAAGAAAAACAGACCAACCATGTAAGAGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR-3UTR CAA 90 bp | TTTTCTTACGCGTTTGAACTCCAGGACAAAGACAGAGCGTGGACTTCAATTCATTTGTCAGTAAAGCACTaGAACCCACAGTTGTCTTGT | + |
|
Preference number: 3 (lower is better) Translates to: FSYAFELQDKDRAWTSIHLSVKH*NPQLSC Trigger: ACAAGACAACTGTGGGTTCAAGTGCTTTACTGACAA...ATGAATTGAAGTCCACGCTCTGTCTTTGTCCTGGAGTTCAAACGCGTAAGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR TCA 72 bp | ACTCCAGGACAAAGACAGAGCGTGGACTTCAATTCATaGAAAGTAATAATAAGGCAACAGAAGGAGAATCCT | + |
|
Preference number: 3 (lower is better) Translates to: TPGQRQSVDFNS*KVIIRQQKENP Trigger: AGGATTCTCCTTCTGTTGCCTTATTATTACTTTTCATGAATTGAAGTCCACGCTCTGTCTTTGTCCTGGAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR GCA 90 bp | AGTAAAGCACTTGAACCCACAGTTGTCTTGTCCTTCGGAAGGTCGGGAAGTTCTCGGCGCCCGCGCGGCTaGGCTCGCAGCTCTCCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: SKALEPTVVLSFGRSGSSRRPRG*ARSSPC Trigger: ACAAGGAGAGCTGCGAGCGCAGCCGCGCGGGCGCCG...AGAACTTCCCGACCTTCCGAAGGACAAGACAACTGTGGGTTCAAGTGCTTTACT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR GCA 90 bp | TACGCGTTTGAACTCCAGGACAAAGACAGAGCGTGGACTTCAATTCATGAAAAGTCCCGCAGCGGCAGGTaGGACAGCGGCATCAGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: YAFELQDKDRAWTSIHEKSRSGR*DSGIRR Trigger: CCGCCTGATGCCGCTGTCGCACCTGCCGCTGCGGGA...CTTTTCATGAATTGAAGTCCACGCTCTGTCTTTGTCCTGGAGTTCAAACGCGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR CCA 90 bp | TCAGTCATCCGGAAAGGGCTGCAGGCAACAGGTTGGAATGTAAAAGACCTCTTTAGAGGCCCGAGTAGGTaGCGAACAGTGGCCGGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: SVIRKGLQATGWNVKDLFRGPSR*RTVAGH Trigger: GTGGCCGGCCACTGTTCGCCACCTACTCGGGCCTCT...AAAGAGGTCTTTTACATTCCAACCTGTTGCCTGCAGCCCTTTCCGGATGACTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR CCA 90 bp | AAAAGACCTCTTTGTGCTTGGAACCCTGATGTGAACTCAGTTCTGCTCCTAATGTCGCAGCTCTCCTTGTaGCGCCGGGGGTCGGTCTCG | + |
|
Preference number: 4 (lower is better) Translates to: KRPLCAWNPDVNSVLLLMSQLSL*RRGSVS Trigger: CGAGACCGACCCCCGGCGCCACAAGGAGAGCTGCGA...CATTAGGAGCAGAACTGAGTTCACATCAGGGTTCCAAGCACAAAGAGGTCTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR CCA 90 bp | TCAGTCATCCGGAAAGGGCTGCAGGCAACAGGTTGGAATGTAAAAGACCTCTTTGTAGGTGGCGAACAGTaGCCGGCCACACTCAGCGTC | + |
|
Preference number: 4 (lower is better) Translates to: SVIRKGLQATGWNVKDLFVGGEQ*PATLSV Trigger: GACGCTGAGTGTGGCCGGCCACTGTTCGCCACCTAC...AAAGAGGTCTTTTACATTCCAACCTGTTGCCTGCAGCCCTTTCCGGATGACTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR TCA 90 bp | ACATTCACAAATAATGCACAGATCTCAGGTGCTGACACAACAAGACACCATCAGCCAGGGAGCAAAGGCTaGGGCCGAGGCTTAGCGCCG | + |
|
Preference number: 4 (lower is better) Translates to: TFTNNAQISGADTTRHHQPGSKG*GRGLAP Trigger: CGGCGCTAAGCCTCGGCCTCAGCCTTTGCTCCCTGG...CTGATGGTGTCTTGTTGTGTCAGCACCTGAGATCTGTGCATTATTTGTGAATGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR TCA 90 bp | TTTCCTGTCAGTCATCCGGAAAGGGCTGCAGGCAACAGGTTGGAATGTAAAAGACCTCCCAGAAGAAGCTaGCCGTGGCCACAATGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: FPVSHPERAAGNRLECKRPPRRS*PWPQCS Trigger: GCTGCATTGTGGCCACGGTCAGCTTCTTCTGGGAGG...TCTTTTACATTCCAACCTGTTGCCTGCAGCCCTTTCCGGATGACTGACAGGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR GCA 90 bp | CCGGAAAGGGCTGCAGGCAACAGGTTGGAATGTAAAAGACCTCTTTGTGCTTGGCGATGTCCCGGTCGATaGCCAGAAAGTAGCACTTCC | + |
|
Preference number: 4 (lower is better) Translates to: PERAAGNRLECKRPLCAWRCPGR*PESSTS Trigger: GGAAGTGCTACTTTCTGGGCATCGACCGGGACATCG...CCAAGCACAAAGAGGTCTTTTACATTCCAACCTGTTGCCTGCAGCCCTTTCCGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR GCA 90 bp | CTCAGACCCACTCTGCTGCTCTGCTCTGTAGCTGGGCCTTCTTCGGTGCAGACCAAAGTGGTACTTGATTaGTGTGCATCGCTGTGCAAT | + |
|
Preference number: 4 (lower is better) Translates to: LRPTLLLCSVAGPSSVQTKVVLD*CASLCN Trigger: ATTGCACAGCGATGCACAGCAATCAAGTACCACTTT...GGTCTGCACCGAAGAAGGCCCAGCTACAGAGCAGAGCAGCAGAGTGGGTCTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR CAA 72 bp | CCTGTCAGTCATCCGGAAAGGGCTGCAGGCAACAGGTaGGAATGTAAAAGACCTCTTTGTGCTTGGAACCCT | + |
|
Preference number: 4 (lower is better) Translates to: PVSHPERAAGNR*ECKRPLCAWNP Trigger: AGGGTTCCAAGCACAAAGAGGTCTTTTACATTCCAACCTGTTGCCTGCAGCCCTTTCCGGATGACTGACAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR CAA 72 bp | TCCCTTCGCCCAATCAGAGCATTGTCAGTAAAGCACTaGAACCCACAGTTGTCTTGTCCTTCGGAAGGTCGG | + |
|
Preference number: 4 (lower is better) Translates to: SLRPIRALSVKH*NPQLSCPSEGR Trigger: CCGACCTTCCGAAGGACAAGACAACTGTGGGTTCAAGTGCTTTACTGACAATGCTCTGATTGGGCGAAGGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR CAA 72 bp | AGCATTGTCAGTAAAGCACTTGAACCCACAGTTGTCTaGTCCTTCGGAAGGTCGGGAAGTTCTGCAGGGTTT | + |
|
Preference number: 4 (lower is better) Translates to: SIVSKALEPTVV*SFGRSGSSAGF Trigger: AAACCCTGCAGAACTTCCCGACCTTCCGAAGGACAAGACAACTGTGGGTTCAAGTGCTTTACTGACAATGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR CAA 72 bp | ATCAGAGCATTGTCAGTAAAGCACTTGAACCCACAGTaGTCTTGTCCTTCGGAAGGTCGGGAAGTTCTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: IRALSVKHLNPQ*SCPSEGREVLQ Trigger: CTGCAGAACTTCCCGACCTTCCGAAGGACAAGACAACTGTGGGTTCAAGTGCTTTACTGACAATGCTCTGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR GCA 90 bp | AAAGGGCTGCAGGCAACAGGTTGGAATGTAAAAGACCTCTTTGTGCTTGGAACCATACCGTGGAGTCCCTaGCAGACTTTAGATGTGCAA | + |
|
Preference number: 4 (lower is better) Translates to: KGLQATGWNVKDLFVLGTIPWSP*QTLDVQ Trigger: TTGCACATCTAAAGTCTGGCAGGGACTCCACGGTAT...GGTTCCAAGCACAAAGAGGTCTTTTACATTCCAACCTGTTGCCTGCAGCCCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR TCA 90 bp | ACATTCACAAATAATGCACAGATCTCAGGTGCTGACACAACAAGACACCATCAGCAATACCTTTCAGGATaGGGGTGTCGATGTCCCGGT | + |
|
Preference number: 4 (lower is better) Translates to: TFTNNAQISGADTTRHHQQYLSG*GCRCPG Trigger: ACCGGGACATCGACACCCTCATCCTGAAAGGTATTG...CTGATGGTGTCTTGTTGTGTCAGCACCTGAGATCTGTGCATTATTTGTGAATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR CAA 72 bp | CTGCAGTGCAATTCTTCCCTTCGCCCAATCAGAGCATaGTCAGTAAAGCACTTGAACCCACAGTTGTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: LQCNSSLRPIRA*SVKHLNPQLSC Trigger: ACAAGACAACTGTGGGTTCAAGTGCTTTACTGACAATGCTCTGATTGGGCGAAGGGAAGAATTGCACTGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR TCA 90 bp | CATTCACAAATAATGCACAGATCTCAGGTGCTGACACAACAAGACACCATCAGGGAGAAAAGTGGTACTTaGTTGCTGTGCATCGCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: HSQIMHRSQVLTQQDTIREKSGT*LLCIAV Trigger: CACAGCGATGCACAGCAATCAAGTACCACTTTTCTC...CCTGATGGTGTCTTGTTGTGTCAGCACCTGAGATCTGTGCATTATTTGTGAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| 3UTR CAA 72 bp | CAGCTCTTACATGGTTGGTCTGTTTTTCTTACGCGTTaGAACTCCAGGACAAAGACAGAGCGTGGACTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: QLLHGWSVFLTR*NSRTKTERGLQ Trigger: TTGAAGTCCACGCTCTGTCTTTGTCCTGGAGTTCAAACGCGTAAGAAAAACAGACCAACCATGTAAGAGCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR TCA 90 bp | AAAAGACCTCTTTGTGCTTGGAACCCTGATGTGAACTCAGTTCTGCTCCTAATGCTTAAGCGGATTGGCTaGGAAAAGTGGTACTTGATT | + |
|
Preference number: 4 (lower is better) Translates to: KRPLCAWNPDVNSVLLLMLKRIG*EKWYLI Trigger: AATCAAGTACCACTTTTCTCAGCCAATCCGCTTAAG...CATTAGGAGCAGAACTGAGTTCACATCAGGGTTCCAAGCACAAAGAGGTCTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR CCA 90 bp | TCAGTCATCCGGAAAGGGCTGCAGGCAACAGGTTGGAATGTAAAAGACCTCTTTTGCCATTCATCTTGCTaGATTGTCTTGGTTAAATTG | + |
|
Preference number: 4 (lower is better) Translates to: SVIRKGLQATGWNVKDLFCHSSC*IVLVKL Trigger: CAATTTAACCAAGACAATCCAGCAAGATGAATGGCA...AAAGAGGTCTTTTACATTCCAACCTGTTGCCTGCAGCCCTTTCCGGATGACTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS TCA 90 bp | GGAGTCCGGCCACGTGCTGGGTCAGGCTTTCCTCCCAGAAGAAGCTaGCCGTGGCCACAATGCAGCCACACAGCAGGACAGCCACCGCCA | + |
|
Preference number: 5 (lower is better) Translates to: GVRPRAGSGFPPRRS*PWPQCSHTAGQPPP Trigger: TGGCGGTGGCTGTCCTGCTGTGTGGCTGCATTGTGGCCACGGTCAGCTTCTTCTGGGAGGAAAGCCTGACCCAGCACGTGGCCGGACTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR CAA 90 bp | TCACAAATAATGCACAGATCTCAGGTGCTGACACAACAAGACACCATCAGGACGCGCTCGCAGCTCTCCTaGTGGCGCCGGGGGTCGGTC | + |
|
Preference number: 5 (lower is better) Translates to: SQIMHRSQVLTQQDTIRTRSQLS*WRRGSV Trigger: GACCGACCCCCGGCGCCACAAGGAGAGCTGCGAGCG...CGTCCTGATGGTGTCTTGTTGTGTCAGCACCTGAGATCTGTGCATTATTTGTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS GCA 90 bp | ATGGTGCAAAATATCCCTGTCATGAGGAATAGGAGTCCGGCCACGTaGTGGGTCAGGCTTTCCTCCCAGAAGAAGCTGACCGTGGCCACA | + |
|
Preference number: 5 (lower is better) Translates to: MVQNIPVMRNRSPAT*WVRLSSQKKLTVAT Trigger: TGTGGCCACGGTCAGCTTCTTCTGGGAGGAAAGCCTGACCCAGCACGTGGCCGGACTCCTATTCCTCATGACAGGGATATTTTGCACCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS CCA 90 bp | GTGCAAAATATCCCTGTCATGAGGAATAGGAGTCCGGCCACGTGCTaGGTCAGGCTTTCCTCCCAGAAGAAGCTGACCGTGGCCACAATG | + |
|
Preference number: 5 (lower is better) Translates to: VQNIPVMRNRSPATC*VRLSSQKKLTVATM Trigger: CATTGTGGCCACGGTCAGCTTCTTCTGGGAGGAAAGCCTGACCCAGCACGTGGCCGGACTCCTATTCCTCATGACAGGGATATTTTGCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS CCA 90 bp | GGCTGTAAATTAGCTTCGGGACCCGGTTCAAGTCATAGGAGACACTaGCGGCGTACGTGCAGAGCGAGATGGTGCAAAATATCCCTGTCA | + |
|
Preference number: 5 (lower is better) Translates to: GCKLASGPGSSHRRH*RRTCRARWCKISLS Trigger: TGACAGGGATATTTTGCACCATCTCGCTCTGCACGTACGCCGCCAGTGTCTCCTATGACTTGAACCGGGTCCCGAAGCTAATTTACAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR CAA 90 bp | CTGTCAGTCATCCGGAAAGGGCTGCAGGCAACAGGTTGGAATGTAAAAGACCTCTGTTTCTTAAGCGGATaGGCTGAGAAAAGTGGTACT | + |
|
Preference number: 5 (lower is better) Translates to: LSVIRKGLQATGWNVKDLCFLSG*AEKSGT Trigger: AGTACCACTTTTCTCAGCCAATCCGCTTAAGAAACA...GAGGTCTTTTACATTCCAACCTGTTGCCTGCAGCCCTTTCCGGATGACTGACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS-3UTR CAA 90 bp | AGTTCTGCTCCTAATGGAACTCAGACCCACTCTGCTGCTCTGCTCTGTAGCTGGTCTTGCTGGATTGTCTaGGTTAAATTGAAAGGAATG | + |
|
Preference number: 5 (lower is better) Translates to: SSAPNGTQTHSAALLCSWSCWIV*VKLKGM Trigger: CATTCCTTTCAATTTAACCAAGACAATCCAGCAAGA...CCAGCTACAGAGCAGAGCAGCAGAGTGGGTCTGAGTTCCATTAGGAGCAGAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS TCA 90 bp | GATGAAGCAGGTGCCATTCATCTTGCTGGATTGTCTTGGTTAAATTaGAAGGAATGTTTCTTAAGCGGATTGGCTGAGAAAAGTGGTACT | + |
|
Preference number: 5 (lower is better) Translates to: DEAGAIHLAGLSWLN*KECFLSGLAEKSGT Trigger: AGTACCACTTTTCTCAGCCAATCCGCTTAAGAAACATTCCTTTCAATTTAACCAAGACAATCCAGCAAGATGAATGGCACCTGCTTCATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS TCA 90 bp | ATTGTCTTGGTTAAATTGAAAGGAATGTTTCTTAAGCGGATTGGCTaGGAAAAGTGGTACTTGATTGCTGTGCATCGCTGTGCAATACCT | + |
|
Preference number: 5 (lower is better) Translates to: IVLVKLKGMFLKRIG*EKWYLIAVHRCAIP Trigger: AGGTATTGCACAGCGATGCACAGCAATCAAGTACCACTTTTCTCAGCCAATCCGCTTAAGAAACATTCCTTTCAATTTAACCAAGACAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS CCA 72 bp | ATCCCTGTCATGAGGAATAGGAGTCCGGCCACGTGCTaGGTCAGGCTTTCCTCCCAGAAGAAGCTGACCGTG | + |
|
Preference number: 6 (lower is better) Translates to: IPVMRNRSPATC*VRLSSQKKLTV Trigger: CACGGTCAGCTTCTTCTGGGAGGAAAGCCTGACCCAGCACGTGGCCGGACTCCTATTCCTCATGACAGGGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS GCA 72 bp | AATATCCCTGTCATGAGGAATAGGAGTCCGGCCACGTaGTGGGTCAGGCTTTCCTCCCAGAAGAAGCTGACC | + |
|
Preference number: 6 (lower is better) Translates to: NIPVMRNRSPAT*WVRLSSQKKLT Trigger: GGTCAGCTTCTTCTGGGAGGAAAGCCTGACCCAGCACGTGGCCGGACTCCTATTCCTCATGACAGGGATATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS CCA 72 bp | TTAGCTTCGGGACCCGGTTCAAGTCATAGGAGACACTaGCGGCGTACGTGCAGAGCGAGATGGTGCAAAATA | + |
|
Preference number: 6 (lower is better) Translates to: LASGPGSSHRRH*RRTCRARWCKI Trigger: TATTTTGCACCATCTCGCTCTGCACGTACGCCGCCAGTGTCTCCTATGACTTGAACCGGGTCCCGAAGCTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS TCA 72 bp | TGTTTCTTAAGCGGATTGGCTGAGAAAAGTGGTACTTaGTTGCTGTGCATCGCTGTGCAATACCTTTCAGGA | + |
|
Preference number: 6 (lower is better) Translates to: CFLSGLAEKSGT*LLCIAVQYLSG Trigger: TCCTGAAAGGTATTGCACAGCGATGCACAGCAATCAAGTACCACTTTTCTCAGCCAATCCGCTTAAGAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS TCA 72 bp | GTTAAATTGAAAGGAATGTTTCTTAAGCGGATTGGCTaGGAAAAGTGGTACTTGATTGCTGTGCATCGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: VKLKGMFLKRIG*EKWYLIAVHRC Trigger: ACAGCGATGCACAGCAATCAAGTACCACTTTTCTCAGCCAATCCGCTTAAGAAACATTCCTTTCAATTTAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||
| CDS TCA 72 bp | GGTGCCATTCATCTTGCTGGATTGTCTTGGTTAAATTaGAAGGAATGTTTCTTAAGCGGATTGGCTGAGAAA | + |
|
Preference number: 6 (lower is better) Translates to: GAIHLAGLSWLN*KECFLSGLAEK Trigger: TTTCTCAGCCAATCCGCTTAAGAAACATTCCTTTCAATTTAACCAAGACAATCCAGCAAGATGAATGGCACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025092.5 |
||