Pregenerated sensors for TMEM169 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026188Ensembl transcript IDs: ENSMUST00000027380.12, ENSMUST00000141783.2
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCCCTAAATGTGTCACTCCATCCCCATCTATTATCTTGGCGGATCTaGTCACCCCTGAGCCTCTTTATCCTTTCTGTCACATTTAGGCAC | + |
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Preference number: 1 (lower is better) Translates to: SLNVSLHPHLLSWRI*SPLSLFILSVTFRH Trigger: GTGCCTAAATGTGACAGAAAGGATAAAGAGGCTCAGGGGTGACCAGATCCGCCAAGATAATAGATGGGGATGGAGTGACACATTTAGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR CCA 90 bp | GATGCACGGCTTTGGCACAAGTCGCTTTTCTATTTTCCGTCATCTTaGAATAATGAAGATGATGAGTTACGCCAGTGTGGGCTAGGCTGT | + |
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Preference number: 1 (lower is better) Translates to: DARLWHKSLFYFPSS*NNEDDELRQCGLGC Trigger: ACAGCCTAGCCCACACTGGCGTAACTCATCATCTTCATTATTCCAAGATGACGGAAAATAGAAAAGCGACTTGTGCCAAAGCCGTGCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR CCA 90 bp | ACTGTTAATCCCTGTTCCCCTTCCTTTCCAGGAAGAATTGTGCTGTaGCTGTGTGACCATATGCTCCTATCTAATGGGTCTTTCCAAAGA | + |
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Preference number: 1 (lower is better) Translates to: TVNPCSPSFPGRIVL*LCDHMLLSNGSFQR Trigger: TCTTTGGAAAGACCCATTAGATAGGAGCATATGGTCACACAGCCACAGCACAATTCTTCCTGGAAAGGAAGGGGAACAGGGATTAACAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR GCA 90 bp | CCCAGAAAACTTCATAGGTCTTGGGATGATCTGCCTCCTGACATCTaGATAAAAAGGAAGTATATTTCTCTCTTGTTTGGCTCACTAATA | + |
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Preference number: 1 (lower is better) Translates to: PRKLHRSWDDLPPDI*IKRKYISLLFGSLI Trigger: TATTAGTGAGCCAAACAAGAGAGAAATATACTTCCTTTTTATGCAGATGTCAGGAGGCAGATCATCCCAAGACCTATGAAGTTTTCTGGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR-3UTR CCA 90 bp | AATATCGCTCCTTTTATGAACCCAAACCCCAAACCCACTGACCTCTTGGGACTCTTATCTTGGCGGATCTaGTCACCCCTGAGCCTCTTT | + |
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Preference number: 2 (lower is better) Translates to: NIAPFMNPNPKPTDLLGLLSWRI*SPLSLF Trigger: AAAGAGGCTCAGGGGTGACCAGATCCGCCAAGATAA...GAGTCCCAAGAGGTCAGTGGGTTTGGGGTTTGGGTTCATAAAAGGAGCGATATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR-3UTR CCA 90 bp | TGTAGTCAATATTTAAAAACTGAGGAGCACCAAGGGCCACATTCTGCCATCCAGCCCCATCTATTATCTTaGCGGATCTGGTCACCCCTG | + |
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Preference number: 2 (lower is better) Translates to: CSQYLKTEEHQGPHSAIQPHLLS*RIWSPL Trigger: CAGGGGTGACCAGATCCGCCAAGATAATAGATGGGG...CTGGATGGCAGAATGTGGCCCTTGGTGCTCCTCAGTTTTTAAATATTGACTACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR CAA 90 bp | AGTGGAGTTCAGCACCATACATTAAATAAATGTCCCTGGCTGGTTTaGGGGGAGCTTGATCAACCCCTCTGGTTTGTTGAGTGCTTCAGA | + |
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Preference number: 2 (lower is better) Translates to: SGVQHHTLNKCPWLV*GELDQPLWFVECFR Trigger: TCTGAAGCACTCAACAAACCAGAGGGGTTGATCAAGCTCCCCCAAAACCAGCCAGGGACATTTATTTAATGTATGGTGCTGAACTCCACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR-3UTR GCA 90 bp | TCCCCATCTATTATCTTGGCGGATCTGGTCACCCCTGAGCCTCTTTATCCTTTCCATTTGTATTTCAGATaGACGGCTTTGGCACAAGTC | + |
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Preference number: 2 (lower is better) Translates to: SPSIILADLVTPEPLYPFHLYFR*TALAQV Trigger: GACTTGTGCCAAAGCCGTGCATCTGAAATACAAATG...GAAAGGATAAAGAGGCTCAGGGGTGACCAGATCCGCCAAGATAATAGATGGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR-3UTR GCA 90 bp | AATATCGCTCCTTTTATGAACCCAAACCCCAAACCCACTGACCTCTTGGGACTCTTCCAGGAAGAATTGTaGTGTGGCTGTGTGACCATA | + |
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Preference number: 2 (lower is better) Translates to: NIAPFMNPNPKPTDLLGLFQEEL*CGCVTI Trigger: TATGGTCACACAGCCACAGCACAATTCTTCCTGGAA...GAGTCCCAAGAGGTCAGTGGGTTTGGGGTTTGGGTTCATAAAAGGAGCGATATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR-3UTR TCA 90 bp | AACCCCAAACCCACTGACCTCTTGGGACTCAGCATTTTGAAATCAGGACACTCTCCATCTCTGTTGCTATaGCAGTTAAGAGTTGTAGTC | + |
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Preference number: 2 (lower is better) Translates to: NPKPTDLLGLSILKSGHSPSLLL*QLRVVV Trigger: GACTACAACTCTTAACTGTCATAGCAACAGAGATGG...AGAGTGTCCTGATTTCAAAATGCTGAGTCCCAAGAGGTCAGTGGGTTTGGGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR-3UTR TCA 90 bp | AATATCGCTCCTTTTATGAACCCAAACCCCAAACCCACTGACCTCTTGGGACTCAACCCTGAAACCACTTaGCAAAAGGTTAAGTTGCCA | + |
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Preference number: 2 (lower is better) Translates to: NIAPFMNPNPKPTDLLGLNPETT*QKVKLP Trigger: TGGCAACTTAACCTTTTGTCAAGTGGTTTCAGGGTT...GAGTCCCAAGAGGTCAGTGGGTTTGGGGTTTGGGTTCATAAAAGGAGCGATATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR-3UTR TCA 90 bp | AATATCGCTCCTTTTATGAACCCAAACCCCAAACCCACTGACCTCTTGGGACTCAAAGGTCTGAGCAAATaGATAAGGCTCCTAGGTTTG | + |
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Preference number: 2 (lower is better) Translates to: NIAPFMNPNPKPTDLLGLKGLSK*IRLLGL Trigger: CAAACCTAGGAGCCTTATTCATTTGCTCAGACCTTT...GAGTCCCAAGAGGTCAGTGGGTTTGGGGTTTGGGTTCATAAAAGGAGCGATATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR-3UTR GCA 90 bp | ATCTCTGGAAATGCACCAGGAAGCACCACAGCTATCCTCAAAAATACTGGACACCTGCCTCCTGACATCTaGATAAAAAGGAAGTATATT | + |
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Preference number: 2 (lower is better) Translates to: ISGNAPGSTTAILKNTGHLPPDI*IKRKYI Trigger: AATATACTTCCTTTTTATGCAGATGTCAGGAGGCAG...GTGTCCAGTATTTTTGAGGATAGCTGTGGTGCTTCCTGGTGCATTTCCAGAGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR-3UTR CCA 90 bp | AACCCCAAACCCACTGACCTCTTGGGACTCAGCATTTTGAAATCAGGACACTCTTATTTCTCTCTTGTTTaGCTCACTAATATTTGTGGC | + |
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Preference number: 2 (lower is better) Translates to: NPKPTDLLGLSILKSGHSYFSLV*LTNICG Trigger: GCCACAAATATTAGTGAGCCAAACAAGAGAGAAATA...AGAGTGTCCTGATTTCAAAATGCTGAGTCCCAAGAGGTCAGTGGGTTTGGGGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR-3UTR TCA 90 bp | GGGACTCAGCATTTTGAAATCAGGACACTCTTAAAAATGAAGCTGTTATTTCTCCATTCTGCCATCCAGTaGACCCCAGAAAACTTCATA | + |
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Preference number: 2 (lower is better) Translates to: GTQHFEIRTLLKMKLLFLHSAIQ*TPENFI Trigger: TATGAAGTTTTCTGGGGTTCACTGGATGGCAGAATG...GAGAAATAACAGCTTCATTTTTAAGAGTGTCCTGATTTCAAAATGCTGAGTCCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR-3UTR CCA 90 bp | GGGACTCAGCATTTTGAAATCAGGACACTCTTAAAAATGAAGCTGTTATTTCTCAAACTTCATAGGTCTTaGGATGATCTGCCTCCTGAC | + |
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Preference number: 2 (lower is better) Translates to: GTQHFEIRTLLKMKLLFLKLHRS*DDLPPD Trigger: GTCAGGAGGCAGATCATCCCAAGACCTATGAAGTTT...GAGAAATAACAGCTTCATTTTTAAGAGTGTCCTGATTTCAAAATGCTGAGTCCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR CAA 90 bp | GATCTGCCTCCTGACATCTGCATAAAAAGGAAGTATATTTCTCTCTaGTTTGGCTCACTAATATTTGTGGCTTTAGTTATGTGCAGTTCT | + |
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Preference number: 2 (lower is better) Translates to: DLPPDICIKRKYISL*FGSLIFVALVMCSS Trigger: AGAACTGCACATAACTAAAGCCACAAATATTAGTGAGCCAAACAAGAGAGAAATATACTTCCTTTTTATGCAGATGTCAGGAGGCAGATC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR-3UTR CAA 90 bp | AATATCGCTCCTTTTATGAACCCAAACCCCAAACCCACTGACCTCTTGGGACTCCCTTTCCAGGAAGAATaGTGCTGTGGCTGTGTGACC | + |
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Preference number: 3 (lower is better) Translates to: NIAPFMNPNPKPTDLLGLPFQEE*CCGCVT Trigger: GGTCACACAGCCACAGCACAATTCTTCCTGGAAAGG...GAGTCCCAAGAGGTCAGTGGGTTTGGGGTTTGGGTTCATAAAAGGAGCGATATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR CCA 72 bp | GTGTCACTCCATCCCCATCTATTATCTTGGCGGATCTaGTCACCCCTGAGCCTCTTTATCCTTTCTGTCACA | + |
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Preference number: 3 (lower is better) Translates to: VSLHPHLLSWRI*SPLSLFILSVT Trigger: TGTGACAGAAAGGATAAAGAGGCTCAGGGGTGACCAGATCCGCCAAGATAATAGATGGGGATGGAGTGACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR CCA 72 bp | CCCTGTTCCCCTTCCTTTCCAGGAAGAATTGTGCTGTaGCTGTGTGACCATATGCTCCTATCTAATGGGTCT | + |
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Preference number: 3 (lower is better) Translates to: PCSPSFPGRIVL*LCDHMLLSNGS Trigger: AGACCCATTAGATAGGAGCATATGGTCACACAGCCACAGCACAATTCTTCCTGGAAAGGAAGGGGAACAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR GCA 72 bp | TTGGGGGAGCTTGATCAACCCCTCTGGTTTGTTGAGTaGTTCAGAGCACTTCTTTCTGAGACACACACATCA | + |
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Preference number: 3 (lower is better) Translates to: LGELDQPLWFVE*FRALLSETHTS Trigger: TGATGTGTGTGTCTCAGAAAGAAGTGCTCTGAAGCACTCAACAAACCAGAGGGGTTGATCAAGCTCCCCCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR CCA 72 bp | TTTATCCTTTCTGTCACATTTAGGCACACACTCCCCTaGGTCATAGGCACCAATAACATCTTCAGGCCCCTG | + |
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Preference number: 3 (lower is better) Translates to: FILSVTFRHTLP*VIGTNNIFRPL Trigger: CAGGGGCCTGAAGATGTTATTGGTGCCTATGACCCAGGGGAGTGTGTGCCTAAATGTGACAGAAAGGATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR CCA 72 bp | TCCCTAAATGTGTCACTCCATCCCCATCTATTATCTTaGCGGATCTGGTCACCCCTGAGCCTCTTTATCCTT | + |
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Preference number: 3 (lower is better) Translates to: SLNVSLHPHLLS*RIWSPLSLFIL Trigger: AAGGATAAAGAGGCTCAGGGGTGACCAGATCCGCCAAGATAATAGATGGGGATGGAGTGACACATTTAGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR-3UTR CAA 90 bp | AACCCCAAACCCACTGACCTCTTGGGACTCAGCATTTTGAAATCAGGACACTCTAGAGTCAAGACGCATTaGTATTTCAGATGCACGGCT | + |
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Preference number: 3 (lower is better) Translates to: NPKPTDLLGLSILKSGHSRVKTH*YFRCTA Trigger: AGCCGTGCATCTGAAATACAAATGCGTCTTGACTCT...AGAGTGTCCTGATTTCAAAATGCTGAGTCCCAAGAGGTCAGTGGGTTTGGGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR TCA 72 bp | ATCCCCATCTATTATCTTGGCGGATCTGGTCACCCCTaGGCCTCTTTATCCTTTCTGTCACATTTAGGCACA | + |
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Preference number: 3 (lower is better) Translates to: IPIYYLGGSGHP*ASLSFLSHLGT Trigger: TGTGCCTAAATGTGACAGAAAGGATAAAGAGGCTCAGGGGTGACCAGATCCGCCAAGATAATAGATGGGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR TCA 72 bp | TTTGGTGAAACCACAGGCAAACTGTGGTTTGAATTTTaGGCTACTGATCCCTGCTGGGTTAGCGTTTGGAAG | + |
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Preference number: 3 (lower is better) Translates to: FGETTGKLWFEF*ATDPCWVSVWK Trigger: CTTCCAAACGCTAACCCAGCAGGGATCAGTAGCTCAAAATTCAAACCACAGTTTGCCTGTGGTTTCACCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR GCA 72 bp | TTAATCCCTGTTCCCCTTCCTTTCCAGGAAGAATTGTaGTGTGGCTGTGTGACCATATGCTCCTATCTAATG | + |
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Preference number: 3 (lower is better) Translates to: LIPVPLPFQEEL*CGCVTICSYLM Trigger: CATTAGATAGGAGCATATGGTCACACAGCCACAGCACAATTCTTCCTGGAAAGGAAGGGGAACAGGGATTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR GCA 72 bp | ATAGGGCAAAGAGTCAAGACGCATTTGTATTTCAGATaGACGGCTTTGGCACAAGTCGCTTTTCTATTTTCC | + |
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Preference number: 3 (lower is better) Translates to: IGQRVKTHLYFR*TALAQVAFLFS Trigger: GGAAAATAGAAAAGCGACTTGTGCCAAAGCCGTGCATCTGAAATACAAATGCGTCTTGACTCTTTGCCCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR CCA 72 bp | CTTTGGCACAAGTCGCTTTTCTATTTTCCGTCATCTTaGAATAATGAAGATGATGAGTTACGCCAGTGTGGG | + |
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Preference number: 3 (lower is better) Translates to: LWHKSLFYFPSS*NNEDDELRQCG Trigger: CCCACACTGGCGTAACTCATCATCTTCATTATTCCAAGATGACGGAAAATAGAAAAGCGACTTGTGCCAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR CCA 90 bp | TCCCCATCTATTATCTTGGCGGATCTGGTCACCCCTGAGCCTCTTTATCCTTTCCCAGAGGACCACGTGTaGCCCCTGGTCCGCCCCGAC | + |
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Preference number: 4 (lower is better) Translates to: SPSIILADLVTPEPLYPFPEDHV*PLVRPD Trigger: GTCGGGGCGGACCAGGGGCCACACGTGGTCCTCTGG...GAAAGGATAAAGAGGCTCAGGGGTGACCAGATCCGCCAAGATAATAGATGGGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR TCA 90 bp | AACCCCAGAAAACTTCATAGGTCTTGGGATGATCTGCCTCCTGACATCTGCATACGCTGCCCAGGACCATaGGAGCTGAGCCACGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: NPRKLHRSWDDLPPDICIRCPGP*ELSHGG Trigger: GCCGCCGTGGCTCAGCTCTCATGGTCCTGGGCAGCG...TATGCAGATGTCAGGAGGCAGATCATCCCAAGACCTATGAAGTTTTCTGGGGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR CCA 90 bp | ATCTCTGGAAATGCACCAGGAAGCACCACAGCTATCCTCAAAAATACTGGACACTGGTCCGCCCCGACCTaGCAGGCCCTCCTTCCCTCG | + |
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Preference number: 4 (lower is better) Translates to: ISGNAPGSTTAILKNTGHWSAPT*QALLPS Trigger: CGAGGGAAGGAGGGCCTGCCAGGTCGGGGCGGACCA...GTGTCCAGTATTTTTGAGGATAGCTGTGGTGCTTCCTGGTGCATTTCCAGAGAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR CCA 90 bp | AACCCCAAACCCACTGACCTCTTGGGACTCAGCATTTTGAAATCAGGACACTCTGCCGTGGTGGGGGCTTaGGAGCTGACCCTGACTTTC | + |
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Preference number: 4 (lower is better) Translates to: NPKPTDLLGLSILKSGHSAVVGA*ELTLTF Trigger: GAAAGTCAGGGTCAGCTCCCAAGCCCCCACCACGGC...AGAGTGTCCTGATTTCAAAATGCTGAGTCCCAAGAGGTCAGTGGGTTTGGGGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR GCA 90 bp | AACCCCAGAAAACTTCATAGGTCTTGGGATGATCTGCCTCCTGACATCTGCATACCTTCCCTCGGGGGCTaGTTCCCTGGACAGCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: NPRKLHRSWDDLPPDICIPSLGG*FPGQLL Trigger: AAGGAGCTGTCCAGGGAAGCAGCCCCCGAGGGAAGG...TATGCAGATGTCAGGAGGCAGATCATCCCAAGACCTATGAAGTTTTCTGGGGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR GCA 90 bp | TCCCCATCTATTATCTTGGCGGATCTGGTCACCCCTGAGCCTCTTTATCCTTTCCCTCCAGACCCAGCTTaGTGCAGAGCCAACCACAGA | + |
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Preference number: 4 (lower is better) Translates to: SPSIILADLVTPEPLYPFPPDPA*CRANHR Trigger: TCTGTGGTTGGCTCTGCAGCAAGCTGGGTCTGGAGG...GAAAGGATAAAGAGGCTCAGGGGTGACCAGATCCGCCAAGATAATAGATGGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR CCA 90 bp | AATATCGCTCCTTTTATGAACCCAAACCCCAAACCCACTGACCTCTTGGGACTCTCCTGCGGCCCAATGTaGATTCCCCATCCAGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: NIAPFMNPNPKPTDLLGLSCGPM*IPHPGP Trigger: TGGCCCTGGATGGGGAATCCACATTGGGCCGCAGGA...GAGTCCCAAGAGGTCAGTGGGTTTGGGGTTTGGGTTCATAAAAGGAGCGATATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR TCA 90 bp | AACCCCAAACCCACTGACCTCTTGGGACTCAGCATTTTGAAATCAGGACACTCTTGGTCCCGGTTAGTGTaGCATAGCGGCTGTCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: NPKPTDLLGLSILKSGHSWSRLV*HSGCPE Trigger: CTCTGGACAGCCGCTATGTCACACTAACCGGGACCA...AGAGTGTCCTGATTTCAAAATGCTGAGTCCCAAGAGGTCAGTGGGTTTGGGGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR CCA 90 bp | TGTAGTCAATATTTAAAAACTGAGGAGCACCAAGGGCCACATTCTGCCATCCAGCGGGGGCTGCTTCCCTaGACAGCTCCTTGGGTTTGG | + |
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Preference number: 4 (lower is better) Translates to: CSQYLKTEEHQGPHSAIQRGLLP*TAPWVW Trigger: CCAAACCCAAGGAGCTGTCCAGGGAAGCAGCCCCCG...CTGGATGGCAGAATGTGGCCCTTGGTGCTCCTCAGTTTTTAAATATTGACTACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR GCA 90 bp | AACCCCAAACCCACTGACCTCTTGGGACTCAGCATTTTGAAATCAGGACACTCTTCCTCCTCTTCTTCCTaGGGCCCAATGTGGATTCCC | + |
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Preference number: 4 (lower is better) Translates to: NPKPTDLLGLSILKSGHSSSSSS*GPMWIP Trigger: GGGAATCCACATTGGGCCGCAGGAAGAAGAGGAGGA...AGAGTGTCCTGATTTCAAAATGCTGAGTCCCAAGAGGTCAGTGGGTTTGGGGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR GCA 90 bp | ATCTCTGGAAATGCACCAGGAAGCACCACAGCTATCCTCAAAAATACTGGACACCCAGACCCAGCTTGCTaGAGAGCCAACCACAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: ISGNAPGSTTAILKNTGHPDPAC*RANHRS Trigger: GCTTCTGTGGTTGGCTCTGCAGCAAGCTGGGTCTGG...GTGTCCAGTATTTTTGAGGATAGCTGTGGTGCTTCCTGGTGCATTTCCAGAGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR CCA 90 bp | ATCTCTGGAAATGCACCAGGAAGCACCACAGCTATCCTCAAAAATACTGGACACCCCTGGACAGCTCCTTaGGTTTGGTCAGCTCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: ISGNAPGSTTAILKNTGHPWTAP*VWSAPA Trigger: TGCAGGAGCTGACCAAACCCAAGGAGCTGTCCAGGG...GTGTCCAGTATTTTTGAGGATAGCTGTGGTGCTTCCTGGTGCATTTCCAGAGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR TCA 90 bp | GGGACTCAGCATTTTGAAATCAGGACACTCTTAAAAATGAAGCTGTTATTTCTCCACTGCCCTCCTCAGTaGGCCGTGGTGGGGGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: GTQHFEIRTLLKMKLLFLHCPPQ*AVVGAW Trigger: CCAAGCCCCCACCACGGCTCACTGAGGAGGGCAGTG...GAGAAATAACAGCTTCATTTTTAAGAGTGTCCTGATTTCAAAATGCTGAGTCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR TCA 90 bp | ATCTCTGGAAATGCACCAGGAAGCACCACAGCTATCCTCAAAAATACTGGACACCTGGGTAGAAGAGAATaGGGCACGGACAGCAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: ISGNAPGSTTAILKNTGHLGRRE*GTDSRR Trigger: TCTCCTGCTGTCCGTGCCTCATTCTCTTCTACCCAG...GTGTCCAGTATTTTTGAGGATAGCTGTGGTGCTTCCTGGTGCATTTCCAGAGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR CCA 90 bp | GTTAATCCCTGTTCCCCTTCCTTTCCAGGAAGAATTGTGCTGTGGCTGTGTGACGGATGGGGTCCTTGTTaGAGAGATTGCCCGAGATAT | + |
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Preference number: 4 (lower is better) Translates to: VNPCSPSFPGRIVLWLCDGWGPC*RDCPRY Trigger: ATATCTCGGGCAATCTCTCCAACAAGGACCCCATCC...GTCACACAGCCACAGCACAATTCTTCCTGGAAAGGAAGGGGAACAGGGATTAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR CAA 72 bp | CTCCCTAAATGTGTCACTCCATCCCCATCTATTATCTaGGCGGATCTGGTCACCCCTGAGCCTCTTTATCCT | + |
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Preference number: 4 (lower is better) Translates to: LPKCVTPSPSII*ADLVTPEPLYP Trigger: AGGATAAAGAGGCTCAGGGGTGACCAGATCCGCCAAGATAATAGATGGGGATGGAGTGACACATTTAGGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR CCA 90 bp | TGTAGTCAATATTTAAAAACTGAGGAGCACCAAGGGCCACATTCTGCCATCCAGACAGCTCCTTGGGTTTaGTCAGCTCCTGCAGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: CSQYLKTEEHQGPHSAIQTAPWV*SAPAAP Trigger: AGGAGCTGCAGGAGCTGACCAAACCCAAGGAGCTGT...CTGGATGGCAGAATGTGGCCCTTGGTGCTCCTCAGTTTTTAAATATTGACTACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR CCA 90 bp | GTTAATCCCTGTTCCCCTTCCTTTCCAGGAAGAATTGTGCTGTGGCTGTGTGACTTTCTACCTCCTGGATaGGGTCCTTGTTGGAGAGAT | + |
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Preference number: 4 (lower is better) Translates to: VNPCSPSFPGRIVLWLCDFLPPG*GPCWRD Trigger: ATCTCTCCAACAAGGACCCCATCCAGGAGGTAGAAA...GTCACACAGCCACAGCACAATTCTTCCTGGAAAGGAAGGGGAACAGGGATTAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR CAA 72 bp | CTCCTAGGTTTGGTGAAACCACAGGCAAACTGTGGTTaGAATTTTGAGCTACTGATCCCTGCTGGGTTAGCG | + |
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Preference number: 4 (lower is better) Translates to: LLGLVKPQANCG*NFELLIPAGLA Trigger: CGCTAACCCAGCAGGGATCAGTAGCTCAAAATTCAAACCACAGTTTGCCTGTGGTTTCACCAAACCTAGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR TCA 90 bp | GTTAATCCCTGTTCCCCTTCCTTTCCAGGAAGAATTGTGCTGTGGCTGTGTGACCGTCTTCTCATTATCTaGCCGGTAGATGATGATGGA | + |
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Preference number: 4 (lower is better) Translates to: VNPCSPSFPGRIVLWLCDRLLII*PVDDDG Trigger: TCCATCATCATCTACCGGTCAGATAATGAGAAGACG...GTCACACAGCCACAGCACAATTCTTCCTGGAAAGGAAGGGGAACAGGGATTAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR TCA 90 bp | AACCCCAAACCCACTGACCTCTTGGGACTCAGCATTTTGAAATCAGGACACTCTCCTTCTCTGTCAGAGTaGCATGGATATCCACCATCT | + |
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Preference number: 4 (lower is better) Translates to: NPKPTDLLGLSILKSGHSPSLSE*HGYPPS Trigger: AGATGGTGGATATCCATGTCACTCTGACAGAGAAGG...AGAGTGTCCTGATTTCAAAATGCTGAGTCCCAAGAGGTCAGTGGGTTTGGGGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR GCA 90 bp | GGCTTTGGCACAAGTCGCTTTTCTATTTTCCGTCATCTTGGAATAATGAAGATGGGTTTGGTCAGCTCCTaGAGCTCCTTCTCTGTCAGA | + |
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Preference number: 4 (lower is better) Translates to: GFGTSRFSIFRHLGIMKMGLVSS*SSFSVR Trigger: TCTGACAGAGAAGGAGCTGCAGGAGCTGACCAAACC...CATCTTCATTATTCCAAGATGACGGAAAATAGAAAAGCGACTTGTGCCAAAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR GCA 90 bp | TGTAGTCAATATTTAAAAACTGAGGAGCACCAAGGGCCACATTCTGCCATCCAGCAGCAGGAGATCTTATaGCAGAAGGTCCTCTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: CSQYLKTEEHQGPHSAIQQQEIL*QKVLSS Trigger: TGAAGAGAGGACCTTCTGGCATAAGATCTCCTGCTG...CTGGATGGCAGAATGTGGCCCTTGGTGCTCCTCAGTTTTTAAATATTGACTACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR CCA 90 bp | GGGACTCAGCATTTTGAAATCAGGACACTCTTAAAAATGAAGCTGTTATTTCTCGAGGTTTCTACCTCCTaGATGGGGTCCTTGTTGGAG | + |
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Preference number: 4 (lower is better) Translates to: GTQHFEIRTLLKMKLLFLEVSTS*MGSLLE Trigger: CTCCAACAAGGACCCCATCCAGGAGGTAGAAACCTC...GAGAAATAACAGCTTCATTTTTAAGAGTGTCCTGATTTCAAAATGCTGAGTCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR CAA 72 bp | AGAGTCAAGACGCATTTGTATTTCAGATGCACGGCTTaGGCACAAGTCGCTTTTCTATTTTCCGTCATCTTG | + |
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Preference number: 4 (lower is better) Translates to: RVKTHLYFRCTA*AQVAFLFSVIL Trigger: CAAGATGACGGAAAATAGAAAAGCGACTTGTGCCAAAGCCGTGCATCTGAAATACAAATGCGTCTTGACTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR TCA 90 bp | GGCTTTGGCACAAGTCGCTTTTCTATTTTCCGTCATCTTGGAATAATGAAGATGAGATGTTGTACCAGGTaGTGGTGCCATAATAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: GFGTSRFSIFRHLGIMKMRCCTR*WCHNRK Trigger: CTTTCTATTATGGCACCATCACCTGGTACAACATCT...CATCTTCATTATTCCAAGATGACGGAAAATAGAAAAGCGACTTGTGCCAAAGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| 3UTR CAA 72 bp | CCTGACATCTGCATAAAAAGGAAGTATATTTCTCTCTaGTTTGGCTCACTAATATTTGTGGCTTTAGTTATG | + |
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Preference number: 4 (lower is better) Translates to: PDICIKRKYISL*FGSLIFVALVM Trigger: CATAACTAAAGCCACAAATATTAGTGAGCCAAACAAGAGAGAAATATACTTCCTTTTTATGCAGATGTCAGG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS TCA 90 bp | GGATTCCCCATCCAGGGCCAGGACAGCAGCCACTGCCCTCCTCAGTaGGCCGTGGTGGGGGCTTGGGAGCTGACCCTGACTTTCCACCGG | + |
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Preference number: 5 (lower is better) Translates to: GFPIQGQDSSHCPPQ*AVVGAWELTLTFHR Trigger: CCGGTGGAAAGTCAGGGTCAGCTCCCAAGCCCCCACCACGGCTCACTGAGGAGGGCAGTGGCTGCTGTCCTGGCCCTGGATGGGGAATCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027380.12 ENSMUST00000141783.2 |
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| CDS CCA 90 bp | GGCGGCATAGAGCCCCAGGGAAGAGGCCATGGTCATGATGAGCACTaGGTAGAAGAGAATGAGGCACGGACAGCAGGAGATCTTATGCCA | + |
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Preference number: 5 (lower is better) Translates to: GGIEPQGRGHGHDEH*VEENEARTAGDLMP Trigger: TGGCATAAGATCTCCTGCTGTCCGTGCCTCATTCTCTTCTACCCAGTGCTCATCATGACCATGGCCTCTTCCCTGGGGCTCTATGCCGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS GCA 90 bp | GTTCCACAATGCTGTAGGGAGAACAGTCCTCCAGACCCAGCTTGCTaGAGAGCCAACCACAGAAGCCTTTCTCCATGTCACAGGCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: VPQCCRENSPPDPAC*RANHRSLSPCHRQL Trigger: GAGCTGCCTGTGACATGGAGAAAGGCTTCTGTGGTTGGCTCTGCAGCAAGCTGGGTCTGGAGGACTGTTCTCCCTACAGCATTGTGGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS GCA 90 bp | GCAGTTCCACAATGCTGTAGGGAGAACAGTCCTCCAGACCCAGCTTaGTGCAGAGCCAACCACAGAAGCCTTTCTCCATGTCACAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: AVPQCCRENSPPDPA*CRANHRSLSPCHRQ Trigger: CTGCCTGTGACATGGAGAAAGGCTTCTGTGGTTGGCTCTGCAGCAAGCTGGGTCTGGAGGACTGTTCTCCCTACAGCATTGTGGAACTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR CAA 90 bp | AACCCCAAACCCACTGACCTCTTGGGACTCAGCATTTTGAAATCAGGACACTCTAGCCGTGGTGGGGGCTaGGGAGCTGACCCTGACTTT | + |
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Preference number: 5 (lower is better) Translates to: NPKPTDLLGLSILKSGHSSRGGG*GADPDF Trigger: AAAGTCAGGGTCAGCTCCCAAGCCCCCACCACGGCT...AGAGTGTCCTGATTTCAAAATGCTGAGTCCCAAGAGGTCAGTGGGTTTGGGGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS GCA 90 bp | TGGAGAGATTGCCCGAGATATTATCAGACTCCAGCAGTTCCACAATaGTGTAGGGAGAACAGTCCTCCAGACCCAGCTTGCTGCAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: WRDCPRYYQTPAVPQ*CRENSPPDPACCRA Trigger: GGCTCTGCAGCAAGCTGGGTCTGGAGGACTGTTCTCCCTACAGCATTGTGGAACTGCTGGAGTCTGATAATATCTCGGGCAATCTCTCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS TCA 90 bp | TCCTGCAGCTCCTTCTCTGTCAGAGTGACATGGATATCCACCATCTaGCCCTTCTTCTTCCCTCGTGTGATGGTCCCGGTTAGTGTGACA | + |
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Preference number: 5 (lower is better) Translates to: SCSSFSVRVTWISTI*PFFFPRVMVPVSVT Trigger: TGTCACACTAACCGGGACCATCACACGAGGGAAGAAGAAGGGTCAGATGGTGGATATCCATGTCACTCTGACAGAGAAGGAGCTGCAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR CAA 90 bp | ATCTCTGGAAATGCACCAGGAAGCACCACAGCTATCCTCAAAAATACTGGACACGACAGCTCCTTGGGTTaGGTCAGCTCCTGCAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: ISGNAPGSTTAILKNTGHDSSLG*VSSCSS Trigger: GGAGCTGCAGGAGCTGACCAAACCCAAGGAGCTGTC...GTGTCCAGTATTTTTGAGGATAGCTGTGGTGCTTCCTGGTGCATTTCCAGAGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR CAA 90 bp | AATATCGCTCCTTTTATGAACCCAAACCCCAAACCCACTGACCTCTTGGGACTCTCCTGGATGGGGTCCTaGTTGGAGAGATTGCCCGAG | + |
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Preference number: 5 (lower is better) Translates to: NIAPFMNPNPKPTDLLGLSWMGS*LERLPE Trigger: CTCGGGCAATCTCTCCAACAAGGACCCCATCCAGGA...GAGTCCCAAGAGGTCAGTGGGTTTGGGGTTTGGGTTCATAAAAGGAGCGATATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS TCA 90 bp | TCCACCTTCAGATTCTTCAGGCTCCTCATCCGTCTTCTCATTATCTaGCCGGTAGATGATGATGGATTCCGGGCGGGAGTCTTTCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: STFRFFRLLIRLLII*PVDDDGFRAGVFPP Trigger: AGGAGGAAAGACTCCCGCCCGGAATCCATCATCATCTACCGGTCAGATAATGAGAAGACGGATGAGGAGCCTGAAGAATCTGAAGGTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027380.12 ENSMUST00000141783.2 |
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| CDS-3UTR CAA 90 bp | TGTTCCCCTTCCTTTCCAGGAAGAATTGTGCTGTGGCTGTGTGACCATATGCTCTGGATGGGGTCCTTGTaGGAGAGATTGCCCGAGATA | + |
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Preference number: 5 (lower is better) Translates to: CSPSFPGRIVLWLCDHMLWMGSL*ERLPEI Trigger: TATCTCGGGCAATCTCTCCAACAAGGACCCCATCCA...GAGCATATGGTCACACAGCCACAGCACAATTCTTCCTGGAAAGGAAGGGGAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR CAA 90 bp | AACCCCAGAAAACTTCATAGGTCTTGGGATGATCTGCCTCCTGACATCTGCATAAAGGTCCTCTCTTCATaGTACACCAGAAAGATGTTG | + |
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Preference number: 5 (lower is better) Translates to: NPRKLHRSWDDLPPDICIKVLSS*YTRKML Trigger: CAACATCTTTCTGGTGTACAATGAAGAGAGGACCTT...TATGCAGATGTCAGGAGGCAGATCATCCCAAGACCTATGAAGTTTTCTGGGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR CAA 90 bp | GGCTTTGGCACAAGTCGCTTTTCTATTTTCCGTCATCTTGGAATAATGAAGATGTACACCAGAAAGATGTaGTACCAGGTGATGGTGCCA | + |
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Preference number: 5 (lower is better) Translates to: GFGTSRFSIFRHLGIMKMYTRKM*YQVMVP Trigger: TGGCACCATCACCTGGTACAACATCTTTCTGGTGTA...CATCTTCATTATTCCAAGATGACGGAAAATAGAAAAGCGACTTGTGCCAAAGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS TCA 90 bp | AGAAGGTCCTCTCTTCATTGTACACCAGAAAGATGTTGTACCAGGTaGTGGTGCCATAATAGAAAGACACAACGAAAGAGAGCACAAAGA | + |
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Preference number: 5 (lower is better) Translates to: RRSSLHCTPERCCTR*WCHNRKTQRKRAQR Trigger: TCTTTGTGCTCTCTTTCGTTGTGTCTTTCTATTATGGCACCATCACCTGGTACAACATCTTTCTGGTGTACAATGAAGAGAGGACCTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS-3UTR CAA 90 bp | GGGACTCAGCATTTTGAAATCAGGACACTCTTAAAAATGAAGCTGTTATTTCTCTCCTTGTTGGAGAGATaGCCCGAGATATTATCAGAC | + |
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Preference number: 5 (lower is better) Translates to: GTQHFEIRTLLKMKLLFLSLLER*PEILSD Trigger: GTCTGATAATATCTCGGGCAATCTCTCCAACAAGGA...GAGAAATAACAGCTTCATTTTTAAGAGTGTCCTGATTTCAAAATGCTGAGTCCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS CAA 72 bp | CAGCCACTGCCCTCCTCAGTGAGCCGTGGTGGGGGCTaGGGAGCTGACCCTGACTTTCCACCGGTGCCGACT | + |
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Preference number: 6 (lower is better) Translates to: QPLPSSVSRGGG*GADPDFPPVPT Trigger: AGTCGGCACCGGTGGAAAGTCAGGGTCAGCTCCCAAGCCCCCACCACGGCTCACTGAGGAGGGCAGTGGCTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027380.12 ENSMUST00000141783.2 |
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| CDS CAA 90 bp | GCCCTCCTTCCCTCGGGGGCTGCTTCCCTGGACAGCTCCTTGGGTTaGGTCAGCTCCTGCAGCTCCTTCTCTGTCAGAGTGACATGGATA | + |
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Preference number: 6 (lower is better) Translates to: ALLPSGAASLDSSLG*VSSCSSFSVRVTWI Trigger: TATCCATGTCACTCTGACAGAGAAGGAGCTGCAGGAGCTGACCAAACCCAAGGAGCTGTCCAGGGAAGCAGCCCCCGAGGGAAGGAGGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS GCA 72 bp | GCTTCCCTGGACAGCTCCTTGGGTTTGGTCAGCTCCTaGAGCTCCTTCTCTGTCAGAGTGACATGGATATCC | + |
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Preference number: 6 (lower is better) Translates to: ASLDSSLGLVSS*SSFSVRVTWIS Trigger: GGATATCCATGTCACTCTGACAGAGAAGGAGCTGCAGGAGCTGACCAAACCCAAGGAGCTGTCCAGGGAAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS GCA 72 bp | TGCTGTAGGGAGAACAGTCCTCCAGACCCAGCTTGCTaGAGAGCCAACCACAGAAGCCTTTCTCCATGTCAC | + |
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Preference number: 6 (lower is better) Translates to: CCRENSPPDPAC*RANHRSLSPCH Trigger: GTGACATGGAGAAAGGCTTCTGTGGTTGGCTCTGCAGCAAGCTGGGTCTGGAGGACTGTTCTCCCTACAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS GCA 72 bp | CAATGCTGTAGGGAGAACAGTCCTCCAGACCCAGCTTaGTGCAGAGCCAACCACAGAAGCCTTTCTCCATGT | + |
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Preference number: 6 (lower is better) Translates to: QCCRENSPPDPA*CRANHRSLSPC Trigger: ACATGGAGAAAGGCTTCTGTGGTTGGCTCTGCAGCAAGCTGGGTCTGGAGGACTGTTCTCCCTACAGCATTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS GCA 72 bp | TGCCCGAGATATTATCAGACTCCAGCAGTTCCACAATaGTGTAGGGAGAACAGTCCTCCAGACCCAGCTTGC | + |
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Preference number: 6 (lower is better) Translates to: CPRYYQTPAVPQ*CRENSPPDPAC Trigger: GCAAGCTGGGTCTGGAGGACTGTTCTCCCTACAGCATTGTGGAACTGCTGGAGTCTGATAATATCTCGGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS CAA 72 bp | ACAGTAGAGGTTTCTACCTCCTGGATGGGGTCCTTGTaGGAGAGATTGCCCGAGATATTATCAGACTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: TVEVSTSWMGSL*ERLPEILSDSS Trigger: GCTGGAGTCTGATAATATCTCGGGCAATCTCTCCAACAAGGACCCCATCCAGGAGGTAGAAACCTCTACTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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| CDS CAA 72 bp | CAGCAGGAGATCTTATGCCAGAAGGTCCTCTCTTCATaGTACACCAGAAAGATGTTGTACCAGGTGATGGTG | + |
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Preference number: 6 (lower is better) Translates to: QQEILCQKVLSS*YTRKMLYQVMV Trigger: CACCATCACCTGGTACAACATCTTTCTGGTGTACAATGAAGAGAGGACCTTCTGGCATAAGATCTCCTGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027380.12 |
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