RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMEM140 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000057137

Ensembl transcript IDs: ENSMUST00000074949.4, ENSMUST00000202999.2

Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTCTGCAGGGCCGCAAACAGGAAAAGCCCTGGGAACAGCGGTCTCTaGAGGCCACTGATAAGCTGCAGCTCTCCCCTCCCTGTTCCTCGT +
Preference number: 1 (lower is better)
Translates to: LCRAANRKSPGNSGL*RPLISCSSPLPVPR
Trigger: ACGAGGAACAGGGAGGGGAGAGCTGCAGCTTATCAGTGGCCTCCAGAGACCGCTGTTCCCAGGGCTTTTCCTGTTTGCGGCCCTGCAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CCA 90 bp CGACACAGTCCAGCAGTAAGCTTCCACCCTCCCAACCAAACAGGCTaGCAACTGCCCACAGTTCCCTGCCAGTCTAGGAGCCTCCTGCTC +
Preference number: 1 (lower is better)
Translates to: RHSPAVSFHPPNQTG*QLPTVPCQSRSLLL
Trigger: GAGCAGGAGGCTCCTAGACTGGCAGGGAACTGTGGGCAGTTGCCAGCCTGTTTGGTTGGGAGGGTGGAAGCTTACTGCTGGACTGTGTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CCA 90 bp CTGATCCTGAGGTGTGGGGTGGAGAAAGCTTGGGTGCCCATGAGGTaGATGGGAGCATGTCCCAACTTGGTCGTGTGCCGTGCTGGCTTT +
Preference number: 1 (lower is better)
Translates to: LILRCGVEKAWVPMR*MGACPNLVVCRAGF
Trigger: AAAGCCAGCACGGCACACGACCAAGTTGGGACATGCTCCCATCCACCTCATGGGCACCCAAGCTTTCTCCACCCCACACCTCAGGATCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR GCA 90 bp TGCCTTGGAGAAAGGAGCCCTTTGTGCCGAGACAGCTGTTTCTTCTaGTCTGCAGGGCCGCAAACAGGAAAAGCCCTGGGAACAGCGGTC +
Preference number: 1 (lower is better)
Translates to: CLGERSPLCRDSCFF*SAGPQTGKALGTAV
Trigger: GACCGCTGTTCCCAGGGCTTTTCCTGTTTGCGGCCCTGCAGAGCAGAAGAAACAGCTGTCTCGGCACAAAGGGCTCCTTTCTCCAAGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CCA 90 bp GCCGCCTCTGGGTTCCTTGACACCACAGCCCGTCTGCACAGTGAGTaGTCCCCTCTGCTGTGCTGGAGATCAACATTAGCTATGACACAG +
Preference number: 1 (lower is better)
Translates to: AASGFLDTTARLHSE*SPLLCWRSTLAMTQ
Trigger: CTGTGTCATAGCTAATGTTGATCTCCAGCACAGCAGAGGGGACCACTCACTGTGCAGACGGGCTGTGGTGTCAAGGAACCCAGAGGCGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CCA 90 bp ACAGCTGTTTCTTCTGCTCTGCAGGGCCGCAAACAGGAAAAGCCCTaGGAACAGCGGTCTCTGGAGGCCACTGATAAGCTGCAGCTCTCC +
Preference number: 1 (lower is better)
Translates to: TAVSSALQGRKQEKP*EQRSLEATDKLQLS
Trigger: GGAGAGCTGCAGCTTATCAGTGGCCTCCAGAGACCGCTGTTCCCAGGGCTTTTCCTGTTTGCGGCCCTGCAGAGCAGAAGAAACAGCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CCA 90 bp TGTAGATCCCTGCATCTGTCCCTAGTGGGTCCTGATCCTGAGGTGTaGGGTGGAGAAAGCTTGGGTGCCCATGAGGTGGATGGGAGCATG +
Preference number: 1 (lower is better)
Translates to: CRSLHLSLVGPDPEV*GGESLGAHEVDGSM
Trigger: CATGCTCCCATCCACCTCATGGGCACCCAAGCTTTCTCCACCCCACACCTCAGGATCAGGACCCACTAGGGACAGATGCAGGGATCTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR GCA 90 bp TCCATAGCACTGTCAAACTCGTGCCTTGGAGAAAGGAGCCCTTTGTaGCGAGACAGCTGTTTCTTCTGCTCTGCAGGGCCGCAAACAGGA +
Preference number: 1 (lower is better)
Translates to: SIALSNSCLGERSPL*RDSCFFCSAGPQTG
Trigger: TCCTGTTTGCGGCCCTGCAGAGCAGAAGAAACAGCTGTCTCGGCACAAAGGGCTCCTTTCTCCAAGGCACGAGTTTGACAGTGCTATGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CCA 90 bp TCGGTTGGCTCAGGGTACATCCATAGCACTGTCAAACTCGTGCCTTaGAGAAAGGAGCCCTTTGTGCCGAGACAGCTGTTTCTTCTGCTC +
Preference number: 1 (lower is better)
Translates to: SVGSGYIHSTVKLVP*RKEPFVPRQLFLLL
Trigger: GAGCAGAAGAAACAGCTGTCTCGGCACAAAGGGCTCCTTTCTCCAAGGCACGAGTTTGACAGTGCTATGGATGTACCCTGAGCCAACCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR TCA 90 bp CCTCTGCTGTGCTGGAGATCAACATTAGCTATGACACAGGGTGACTaGGAAGAACTACTCAGCACAGGTCCTCTGGCACCTTCTTGGAGC +
Preference number: 1 (lower is better)
Translates to: PLLCWRSTLAMTQGD*EELLSTGPLAPSWS
Trigger: GCTCCAAGAAGGTGCCAGAGGACCTGTGCTGAGTAGTTCTTCTCAGTCACCCTGTGTCATAGCTAATGTTGATCTCCAGCACAGCAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR TCA 90 bp GTCCCCTCTGCTGTGCTGGAGATCAACATTAGCTATGACACAGGGTaGCTGAGAAGAACTACTCAGCACAGGTCCTCTGGCACCTTCTTG +
Preference number: 1 (lower is better)
Translates to: VPSAVLEINISYDTG*LRRTTQHRSSGTFL
Trigger: CAAGAAGGTGCCAGAGGACCTGTGCTGAGTAGTTCTTCTCAGTCACCCTGTGTCATAGCTAATGTTGATCTCCAGCACAGCAGAGGGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CCA 90 bp AGGCTTTGCTCCCAACTTCCAGTCCCAGGAGGTTGTCAGTTTGGGTaGGACTTTTTCTGTAGCAGGATGCAGAAACGCATCCTGTTACAG +
Preference number: 1 (lower is better)
Translates to: RLCSQLPVPGGCQFG*DFFCSRMQKRILLQ
Trigger: CTGTAACAGGATGCGTTTCTGCATCCTGCTACAGAAAAAGTCCCACCCAAACTGACAACCTCCTGGGACTGGAAGTTGGGAGCAAAGCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR TCA 90 bp GCCTTTCCAGTTCTGGGTAAGGTGAGGGGACACGGTGTGTGTTTGTaGCGACTATTCAATCCTGTTCACCTTCCAGGAGTTGACACATTT +
Preference number: 1 (lower is better)
Translates to: AFPVLGKVRGHGVCL*RLFNPVHLPGVDTF
Trigger: AAATGTGTCAACTCCTGGAAGGTGAACAGGATTGAATAGTCGTCACAAACACACACCGTGTCCCCTCACCTTACCCAGAACTGGAAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CAA 90 bp AAGAAACTGCAGGTACCCCAGCCCTCCAAGCCGCCTCTGGGTTCCTaGACACCACAGCCCGTCTGCACAGTGAGTGGTCCCCTCTGCTGT +
Preference number: 2 (lower is better)
Translates to: KKLQVPQPSKPPLGS*TPQPVCTVSGPLCC
Trigger: ACAGCAGAGGGGACCACTCACTGTGCAGACGGGCTGTGGTGTCAAGGAACCCAGAGGCGGCTTGGAGGGCTGGGGTACCTGCAGTTTCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CAA 90 bp CCCTGTCTACCACCAGTCACCTCTCTTCCTCCTGGGGCCTCCACCTaGACCCCTGTAAGGGAGAGTGGGACACGGGTCGCTGAGGACAAA +
Preference number: 2 (lower is better)
Translates to: PCLPPVTSLPPGAST*TPVRESGTRVAEDK
Trigger: TTTGTCCTCAGCGACCCGTGTCCCACTCTCCCTTACAGGGGTCAAGGTGGAGGCCCCAGGAGGAAGAGAGGTGACTGGTGGTAGACAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR-3UTR GCA 90 bp GTCCCAGGAGGTTGTCAGTTTGGGTGGGACTTTTTCTGTAGCAGGATGCAGAAACTGCCCACAGTTCCCTaGCAGTCTAGGAGCCTCCTG +
Preference number: 2 (lower is better)
Translates to: VPGGCQFGWDFFCSRMQKLPTVP*QSRSLL
Trigger: CAGGAGGCTCCTAGACTGGCAGGGAACTGTGGGCAG...TTTCTGCATCCTGCTACAGAAAAAGTCCCACCCAAACTGACAACCTCCTGGGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR-3UTR GCA 90 bp TGTTACAGACTTTCCCTGCTCCACCCTCGGGCCCTGAGGGATGGCAATCCCAGCGGTCTTGGGCCTACTTaGCAGATGCAAAGGAAAATA +
Preference number: 2 (lower is better)
Translates to: CYRLSLLHPRALRDGNPSGLGPT*QMQRKI
Trigger: TATTTTCCTTTGCATCTGGCAAGTAGGCCCAAGACC...GCTGGGATTGCCATCCCTCAGGGCCCGAGGGTGGAGCAGGGAAAGTCTGTAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CAA 90 bp ACATCCATAGCACTGTCAAACTCGTGCCTTGGAGAAAGGAGCCCTTaGTGCCGAGACAGCTGTTTCTTCTGCTCTGCAGGGCCGCAAACA +
Preference number: 2 (lower is better)
Translates to: TSIALSNSCLGERSP*CRDSCFFCSAGPQT
Trigger: TGTTTGCGGCCCTGCAGAGCAGAAGAAACAGCTGTCTCGGCACAAAGGGCTCCTTTCTCCAAGGCACGAGTTTGACAGTGCTATGGATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR-3UTR GCA 90 bp TGGCAATCCCAGCCCCGAGTTTCATTCACAGTAAAAGTGAGGTCTTGGGCCTACGTGAGTGGTCCCCTCTaGTGTGCTGGAGATCAACAT +
Preference number: 2 (lower is better)
Translates to: WQSQPRVSFTVKVRSWAYVSGPL*CAGDQH
Trigger: ATGTTGATCTCCAGCACAGCAGAGGGGACCACTCAC...GTAGGCCCAAGACCTCACTTTTACTGTGAATGAAACTCGGGGCTGGGATTGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR-3UTR CCA 90 bp CCAGATGCAAAGGAAAATAGAGCTGCCGAGAACATGGGTATTCTAGACAGGCAGCCCAACCAAACAGGCTaGCAACTGCCCACAGTTCCC +
Preference number: 2 (lower is better)
Translates to: PDAKENRAAENMGILDRQPNQTG*QLPTVP
Trigger: GGGAACTGTGGGCAGTTGCCAGCCTGTTTGGTTGGG...CTGCCTGTCTAGAATACCCATGTTCTCGGCAGCTCTATTTTCCTTTGCATCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CAA 90 bp AAACCAGGCTTTGCTCCCAACTTCCAGTCCCAGGAGGTTGTCAGTTaGGGTGGGACTTTTTCTGTAGCAGGATGCAGAAACGCATCCTGT +
Preference number: 2 (lower is better)
Translates to: KPGFAPNFQSQEVVS*GGTFSVAGCRNASC
Trigger: ACAGGATGCGTTTCTGCATCCTGCTACAGAAAAAGTCCCACCCAAACTGACAACCTCCTGGGACTGGAAGTTGGGAGCAAAGCCTGGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR-3UTR CCA 90 bp CCAGATGCAAAGGAAAATAGAGCTGCCGAGAACATGGGTATTCTAGACAGGCAGTCAGCACAGGTCCTCTaGCACCTTCTTGGAGCACAG +
Preference number: 2 (lower is better)
Translates to: PDAKENRAAENMGILDRQSAQVL*HLLGAQ
Trigger: CTGTGCTCCAAGAAGGTGCCAGAGGACCTGTGCTGA...CTGCCTGTCTAGAATACCCATGTTCTCGGCAGCTCTATTTTCCTTTGCATCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR-3UTR CCA 90 bp CCAGATGCAAAGGAAAATAGAGCTGCCGAGAACATGGGTATTCTAGACAGGCAGGATAGCTTGGAAGTTTaGCCTCTGACAGACTCCCAC +
Preference number: 2 (lower is better)
Translates to: PDAKENRAAENMGILDRQDSLEV*PLTDSH
Trigger: GTGGGAGTCTGTCAGAGGCCAAACTTCCAAGCTATC...CTGCCTGTCTAGAATACCCATGTTCTCGGCAGCTCTATTTTCCTTTGCATCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR-3UTR GCA 90 bp TTCTTTATATTCACTTTGGCTTTTGATGAGCACAGAATGAAGAACTCATTGCCAACACCACAGCCCGTCTaGACAGTGAGTGGTCCCCTC +
Preference number: 2 (lower is better)
Translates to: FFIFTLAFDEHRMKNSLPTPQPV*TVSGPL
Trigger: GAGGGGACCACTCACTGTGCAGACGGGCTGTGGTGT...TGGCAATGAGTTCTTCATTCTGTGCTCATCAAAAGCCAAAGTGAATATAAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR-3UTR CCA 90 bp TTCTTTATATTCACTTTGGCTTTTGATGAGCACAGAATGAAGAACTCATTGCCACGTCTGCACAGTGAGTaGTCCCCTCTGCTGTGCTGG +
Preference number: 2 (lower is better)
Translates to: FFIFTLAFDEHRMKNSLPRLHSE*SPLLCW
Trigger: CCAGCACAGCAGAGGGGACCACTCACTGTGCAGACG...TGGCAATGAGTTCTTCATTCTGTGCTCATCAAAAGCCAAAGTGAATATAAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR-3UTR CCA 90 bp GGTTTCTTTATATTCACTTTGGCTTTTGATGAGCACAGAATGAAGAACTCATTGAGACTCCCACCTGCCTaGGACTATAGGAATCCCTGT +
Preference number: 2 (lower is better)
Translates to: GFFIFTLAFDEHRMKNSLRLPPA*DYRNPC
Trigger: ACAGGGATTCCTATAGTCCCAGGCAGGTGGGAGTCT...CAATGAGTTCTTCATTCTGTGCTCATCAAAAGCCAAAGTGAATATAAAGAAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR-3UTR TCA 90 bp GGTTTCTTTATATTCACTTTGGCTTTTGATGAGCACAGAATGAAGAACTCATTGAGCTATGACACAGGGTaGCTGAGAAGAACTACTCAG +
Preference number: 2 (lower is better)
Translates to: GFFIFTLAFDEHRMKNSLSYDTG*LRRTTQ
Trigger: CTGAGTAGTTCTTCTCAGTCACCCTGTGTCATAGCT...CAATGAGTTCTTCATTCTGTGCTCATCAAAAGCCAAAGTGAATATAAAGAAACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR-3UTR CAA 90 bp TCTACCACCAGTCACCTCTCTTCCTCCTGGGGCCTCCACCTTGACCCCTGTAAGCCGCCTCTGGGTTCCTaGACACCACAGCCCGTCTGC +
Preference number: 3 (lower is better)
Translates to: STTSHLSSSWGLHLDPCKPPLGS*TPQPVC
Trigger: GCAGACGGGCTGTGGTGTCAAGGAACCCAGAGGCGG...CTTACAGGGGTCAAGGTGGAGGCCCCAGGAGGAAGAGAGGTGACTGGTGGTAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR-3UTR CAA 90 bp TGTTACAGACTTTCCCTGCTCCACCCTCGGGCCCTGAGGGATGGCAATCCCAGCCCTGGGGCCTCCACCTaGACCCCTGTAAGGGAGAGT +
Preference number: 3 (lower is better)
Translates to: CYRLSLLHPRALRDGNPSPGAST*TPVRES
Trigger: ACTCTCCCTTACAGGGGTCAAGGTGGAGGCCCCAGG...GCTGGGATTGCCATCCCTCAGGGCCCGAGGGTGGAGCAGGGAAAGTCTGTAACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR TCA 72 bp CTCCCCTCCCTGTTCCTCGTCCCCCGGGAGCAGCAGTaGGGAAGAAGACAGCAGGATCAGCTCTCTTGCTCC +
Preference number: 3 (lower is better)
Translates to: LPSLFLVPREQQ*GRRQQDQLSCS
Trigger: GGAGCAAGAGAGCTGATCCTGCTGTCTTCTTCCTCACTGCTGCTCCCGGGGGACGAGGAACAGGGAGGGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR-3UTR CAA 90 bp CCCTGGGAACAGCGGTCTCTGGAGGCCACTGATAAGCTGCAGCTCTCCCCTCCCTCCTCTGGCACCTTCTaGGAGCACAGTTGGAACCGA +
Preference number: 3 (lower is better)
Translates to: PWEQRSLEATDKLQLSPPSSGTF*EHSWNR
Trigger: TCGGTTCCAACTGTGCTCCAAGAAGGTGCCAGAGGA...GGGAGGGGAGAGCTGCAGCTTATCAGTGGCCTCCAGAGACCGCTGTTCCCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CCA 72 bp CCAGCAGTAAGCTTCCACCCTCCCAACCAAACAGGCTaGCAACTGCCCACAGTTCCCTGCCAGTCTAGGAGC +
Preference number: 3 (lower is better)
Translates to: PAVSFHPPNQTG*QLPTVPCQSRS
Trigger: GCTCCTAGACTGGCAGGGAACTGTGGGCAGTTGCCAGCCTGTTTGGTTGGGAGGGTGGAAGCTTACTGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CCA 72 bp TGGGTCCTGATCCTGAGGTGTGGGGTGGAGAAAGCTTaGGTGCCCATGAGGTGGATGGGAGCATGTCCCAAC +
Preference number: 3 (lower is better)
Translates to: WVLILRCGVEKA*VPMRWMGACPN
Trigger: GTTGGGACATGCTCCCATCCACCTCATGGGCACCCAAGCTTTCTCCACCCCACACCTCAGGATCAGGACCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR GCA 72 bp CCCTACTGGCCCCTGCCACCCACGAAAACCAGGCTTTaGTCCCAACTTCCAGTCCCAGGAGGTTGTCAGTTT +
Preference number: 3 (lower is better)
Translates to: PYWPLPPTKTRL*SQLPVPGGCQF
Trigger: AAACTGACAACCTCCTGGGACTGGAAGTTGGGAGCAAAGCCTGGTTTTCGTGGGTGGCAGGGGCCAGTAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR GCA 72 bp TATGAATTGTTCACTGCTTCAGCTGAGAGCTGTGGGTaGTGCCCACCCCTACTGGCCCCTGCCACCCACGAA +
Preference number: 3 (lower is better)
Translates to: YELFTASAESCG*CPPLLAPATHE
Trigger: TTCGTGGGTGGCAGGGGCCAGTAGGGGTGGGCAGCACCCACAGCTCTCAGCTGAAGCAGTGAACAATTCATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR TCA 72 bp GTCTGCATCCCTGGGTCACGAGGATGGCTTAACAGCTaGTTCCTGTTTGCTGTCAGGTCCAGGGACCCCTTC +
Preference number: 3 (lower is better)
Translates to: VCIPGSRGWLNS*FLFAVRSRDPF
Trigger: GAAGGGGTCCCTGGACCTGACAGCAAACAGGAATCAGCTGTTAAGCCATCCTCGTGACCCAGGGATGCAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR GCA 72 bp CCCTGTGCTAATGAGCTACATGGTACCCTAAGAAACTaGAGGTACCCCAGCCCTCCAAGCCGCCTCTGGGTT +
Preference number: 3 (lower is better)
Translates to: PCANELHGTLRN*RYPSPPSRLWV
Trigger: AACCCAGAGGCGGCTTGGAGGGCTGGGGTACCTGCAGTTTCTTAGGGTACCATGTAGCTCATTAGCACAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR GCA 72 bp GAAAGGAGCCCTTTGTGCCGAGACAGCTGTTTCTTCTaGTCTGCAGGGCCGCAAACAGGAAAAGCCCTGGGA +
Preference number: 3 (lower is better)
Translates to: ERSPLCRDSCFF*SAGPQTGKALG
Trigger: TCCCAGGGCTTTTCCTGTTTGCGGCCCTGCAGAGCAGAAGAAACAGCTGTCTCGGCACAAAGGGCTCCTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR GCA 72 bp CTGTCAAACTCGTGCCTTGGAGAAAGGAGCCCTTTGTaGCGAGACAGCTGTTTCTTCTGCTCTGCAGGGCCG +
Preference number: 3 (lower is better)
Translates to: LSNSCLGERSPL*RDSCFFCSAGP
Trigger: CGGCCCTGCAGAGCAGAAGAAACAGCTGTCTCGGCACAAAGGGCTCCTTTCTCCAAGGCACGAGTTTGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CCA 72 bp GGGTTCCTTGACACCACAGCCCGTCTGCACAGTGAGTaGTCCCCTCTGCTGTGCTGGAGATCAACATTAGCT +
Preference number: 3 (lower is better)
Translates to: GFLDTTARLHSE*SPLLCWRSTLA
Trigger: AGCTAATGTTGATCTCCAGCACAGCAGAGGGGACCACTCACTGTGCAGACGGGCTGTGGTGTCAAGGAACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR TCA 72 bp CTTGACCCCTGTAAGGGAGAGTGGGACACGGGTCGCTaGGGACAAAAGATCACACCAGAGTCCAGGTTTCTT +
Preference number: 3 (lower is better)
Translates to: LDPCKGEWDTGR*GQKITPESRFL
Trigger: AAGAAACCTGGACTCTGGTGTGATCTTTTGTCCTCAGCGACCCGTGTCCCACTCTCCCTTACAGGGGTCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CCA 72 bp GAAGAACTACTCAGCACAGGTCCTCTGGCACCTTCTTaGAGCACAGTTGGAACCGAACCCTTGCAATCCCAT +
Preference number: 3 (lower is better)
Translates to: EELLSTGPLAPS*STVGTEPLQSH
Trigger: ATGGGATTGCAAGGGTTCGGTTCCAACTGTGCTCCAAGAAGGTGCCAGAGGACCTGTGCTGAGTAGTTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR TCA 72 bp GTGACGACTATTCAATCCTGTTCACCTTCCAGGAGTTaGCACATTTTGCGTCTGCATCCCTGGGTCACGAGG +
Preference number: 3 (lower is better)
Translates to: VTTIQSCSPSRS*HILRLHPWVTR
Trigger: CCTCGTGACCCAGGGATGCAGACGCAAAATGTGTCAACTCCTGGAAGGTGAACAGGATTGAATAGTCGTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CCA 72 bp CTTGGAAGTTTGGCCTCTGACAGACTCCCACCTGCCTaGGACTATAGGAATCCCTGTGCTAATGAGCTACAT +
Preference number: 3 (lower is better)
Translates to: LGSLASDRLPPA*DYRNPCANELH
Trigger: ATGTAGCTCATTAGCACAGGGATTCCTATAGTCCCAGGCAGGTGGGAGTCTGTCAGAGGCCAAACTTCCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CCA 72 bp TCCCAACTTCCAGTCCCAGGAGGTTGTCAGTTTGGGTaGGACTTTTTCTGTAGCAGGATGCAGAAACGCATC +
Preference number: 3 (lower is better)
Translates to: SQLPVPGGCQFG*DFFCSRMQKRI
Trigger: GATGCGTTTCTGCATCCTGCTACAGAAAAAGTCCCACCCAAACTGACAACCTCCTGGGACTGGAAGTTGGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CCA 72 bp TCAGGGTACATCCATAGCACTGTCAAACTCGTGCCTTaGAGAAAGGAGCCCTTTGTGCCGAGACAGCTGTTT +
Preference number: 3 (lower is better)
Translates to: SGYIHSTVKLVP*RKEPFVPRQLF
Trigger: AAACAGCTGTCTCGGCACAAAGGGCTCCTTTCTCCAAGGCACGAGTTTGACAGTGCTATGGATGTACCCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR TCA 72 bp TGCTGGAGATCAACATTAGCTATGACACAGGGTGACTaGGAAGAACTACTCAGCACAGGTCCTCTGGCACCT +
Preference number: 3 (lower is better)
Translates to: CWRSTLAMTQGD*EELLSTGPLAP
Trigger: AGGTGCCAGAGGACCTGTGCTGAGTAGTTCTTCTCAGTCACCCTGTGTCATAGCTAATGTTGATCTCCAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR TCA 72 bp GTTCTGGGTAAGGTGAGGGGACACGGTGTGTGTTTGTaGCGACTATTCAATCCTGTTCACCTTCCAGGAGTT +
Preference number: 3 (lower is better)
Translates to: VLGKVRGHGVCL*RLFNPVHLPGV
Trigger: AACTCCTGGAAGGTGAACAGGATTGAATAGTCGTCACAAACACACACCGTGTCCCCTCACCTTACCCAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR GCA 72 bp TTCAATCCTGTTCACCTTCCAGGAGTTGACACATTTTaGGTCTGCATCCCTGGGTCACGAGGATGGCTTAAC +
Preference number: 3 (lower is better)
Translates to: FNPVHLPGVDTF*VCIPGSRGWLN
Trigger: GTTAAGCCATCCTCGTGACCCAGGGATGCAGACGCAAAATGTGTCAACTCCTGGAAGGTGAACAGGATTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR GCA 72 bp GTTGTCAGTTTGGGTGGGACTTTTTCTGTAGCAGGATaGAGAAACGCATCCTGTTACAGACTTTCCCTGCTC +
Preference number: 3 (lower is better)
Translates to: VVSLGGTFSVAG*RNASCYRLSLL
Trigger: GAGCAGGGAAAGTCTGTAACAGGATGCGTTTCTGCATCCTGCTACAGAAAAAGTCCCACCCAAACTGACAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CCA 72 bp TCTAGTTTGACACTTTGCCAAGATAGCTTGGAAGTTTaGCCTCTGACAGACTCCCACCTGCCTGGGACTATA +
Preference number: 3 (lower is better)
Translates to: SSLTLCQDSLEV*PLTDSHLPGTI
Trigger: TATAGTCCCAGGCAGGTGGGAGTCTGTCAGAGGCCAAACTTCCAAGCTATCTTGGCAAAGTGTCAAACTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR TCA 72 bp CCCATTTGTTGCCATAACCATCACAGAGTTCTAGTTTaGCACTTTGCCAAGATAGCTTGGAAGTTTGGCCTC +
Preference number: 3 (lower is better)
Translates to: PICCHNHHRVLV*HFAKIAWKFGL
Trigger: GAGGCCAAACTTCCAAGCTATCTTGGCAAAGTGTCAAACTAGAACTCTGTGATGGTTATGGCAACAAATGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR TCA 72 bp ACTCATTGCCACGTAGGTTTTCTGATATACAGGCACTaGACAAAATATATACTGATGCCGCGATGCATAATA +
Preference number: 3 (lower is better)
Translates to: THCHVGFLIYRH*TKYILMPRCII
Trigger: TATTATGCATCGCGGCATCAGTATATATTTTGTTCAGTGCCTGTATATCAGAAAACCTACGTGGCAATGAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CAA 72 bp CAGGTACCCCAGCCCTCCAAGCCGCCTCTGGGTTCCTaGACACCACAGCCCGTCTGCACAGTGAGTGGTCCC +
Preference number: 4 (lower is better)
Translates to: QVPQPSKPPLGS*TPQPVCTVSGP
Trigger: GGGACCACTCACTGTGCAGACGGGCTGTGGTGTCAAGGAACCCAGAGGCGGCTTGGAGGGCTGGGGTACCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CAA 72 bp CCACCAGTCACCTCTCTTCCTCCTGGGGCCTCCACCTaGACCCCTGTAAGGGAGAGTGGGACACGGGTCGCT +
Preference number: 4 (lower is better)
Translates to: PPVTSLPPGAST*TPVRESGTRVA
Trigger: AGCGACCCGTGTCCCACTCTCCCTTACAGGGGTCAAGGTGGAGGCCCCAGGAGGAAGAGAGGTGACTGGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CAA 72 bp TGGGTGCCCATGAGGTGGATGGGAGCATGTCCCAACTaGGTCGTGTGCCGTGCTGGCTTTTCGGTTGGCTCA +
Preference number: 4 (lower is better)
Translates to: WVPMRWMGACPN*VVCRAGFSVGS
Trigger: TGAGCCAACCGAAAAGCCAGCACGGCACACGACCAAGTTGGGACATGCTCCCATCCACCTCATGGGCACCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CAA 72 bp GTGGGTCCTGATCCTGAGGTGTGGGGTGGAGAAAGCTaGGGTGCCCATGAGGTGGATGGGAGCATGTCCCAA +
Preference number: 4 (lower is better)
Translates to: VGPDPEVWGGES*GAHEVDGSMSQ
Trigger: TTGGGACATGCTCCCATCCACCTCATGGGCACCCAAGCTTTCTCCACCCCACACCTCAGGATCAGGACCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
CDS-3UTR TCA 90 bp GTTTGGCCTCTGACAGACTCCCACCTGCCTGGGACTATAGGAATCCCTGTGCTAAGGGCTAGTCCAACCTaGGGAATGCCCAGCACGTCC +
Preference number: 4 (lower is better)
Translates to: VWPLTDSHLPGTIGIPVLRASPT*GMPSTS
Trigger: GGACGTGCTGGGCATTCCTCAGGTTGGACTAGCCCT...TAGCACAGGGATTCCTATAGTCCCAGGCAGGTGGGAGTCTGTCAGAGGCCAAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
CDS-3UTR TCA 90 bp GTCCTCTGGCACCTTCTTGGAGCACAGTTGGAACCGAACCCTTGCAATCCCATACGGCCAAGAGGATCATaGTGCCCACGAAGGGCAGGT +
Preference number: 4 (lower is better)
Translates to: VLWHLLGAQLEPNPCNPIRPRGS*CPRRAG
Trigger: ACCTGCCCTTCGTGGGCATCATGATCCTCTTGGCCG...TATGGGATTGCAAGGGTTCGGTTCCAACTGTGCTCCAAGAAGGTGCCAGAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
CDS-3UTR GCA 90 bp CTGGGTCACGAGGATGGCTTAACAGCTGATTCCTGTTTGCTGTCAGGTCCAGGGGTAGGTCAGCGAGGTTaGCAGCCTTCCAGAGGAGAG +
Preference number: 4 (lower is better)
Translates to: LGHEDGLTADSCLLSGPGVGQRG*QPSRGE
Trigger: CTCTCCTCTGGAAGGCTGGCAACCTCGCTGACCTAC...CCCTGGACCTGACAGCAAACAGGAATCAGCTGTTAAGCCATCCTCGTGACCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
CDS-3UTR CCA 90 bp CACGAAAACCAGGCTTTGCTCCCAACTTCCAGTCCCAGGAGGTTGTCAGTTTGGCTCCGGCCAACAGAATaGAGGATGCCGCCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: HENQALLPTSSPRRLSVWLRPTE*RMPPGS
Trigger: GCTTCCTGGCGGCATCCTCCATTCTGTTGGCCGGAG...CCAAACTGACAACCTCCTGGGACTGGAAGTTGGGAGCAAAGCCTGGTTTTCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CAA 72 bp GCACTGTCAAACTCGTGCCTTGGAGAAAGGAGCCCTTaGTGCCGAGACAGCTGTTTCTTCTGCTCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: ALSNSCLGERSP*CRDSCFFCSAG
Trigger: CCCTGCAGAGCAGAAGAAACAGCTGTCTCGGCACAAAGGGCTCCTTTCTCCAAGGCACGAGTTTGACAGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
CDS-3UTR TCA 90 bp CCAGATGCAAAGGAAAATAGAGCTGCCGAGAACATGGGTATTCTAGACAGGCAGCCAGGAAGGAGAGCCTaGGCCACTTCCACACGAAGG +
Preference number: 4 (lower is better)
Translates to: PDAKENRAAENMGILDRQPGRRA*ATSTRR
Trigger: CCTTCGTGTGGAAGTGGCTCAGGCTCTCCTTCCTGG...CTGCCTGTCTAGAATACCCATGTTCTCGGCAGCTCTATTTTCCTTTGCATCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
CDS-3UTR TCA 90 bp GTCCTCTGGCACCTTCTTGGAGCACAGTTGGAACCGAACCCTTGCAATCCCATACCACAAGCAAGAAGATaGGTAACAGCTGGGCTAGGC +
Preference number: 4 (lower is better)
Translates to: VLWHLLGAQLEPNPCNPIPQARR*VTAGLG
Trigger: GCCTAGCCCAGCTGTTACTCATCTTCTTGCTTGTGG...TATGGGATTGCAAGGGTTCGGTTCCAACTGTGCTCCAAGAAGGTGCCAGAGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CAA 72 bp AGAAGAACTACTCAGCACAGGTCCTCTGGCACCTTCTaGGAGCACAGTTGGAACCGAACCCTTGCAATCCCA +
Preference number: 4 (lower is better)
Translates to: RRTTQHRSSGTF*EHSWNRTLAIP
Trigger: TGGGATTGCAAGGGTTCGGTTCCAACTGTGCTCCAAGAAGGTGCCAGAGGACCTGTGCTGAGTAGTTCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CAA 72 bp TGTGACGACTATTCAATCCTGTTCACCTTCCAGGAGTaGACACATTTTGCGTCTGCATCCCTGGGTCACGAG +
Preference number: 4 (lower is better)
Translates to: CDDYSILFTFQE*THFASASLGHE
Trigger: CTCGTGACCCAGGGATGCAGACGCAAAATGTGTCAACTCCTGGAAGGTGAACAGGATTGAATAGTCGTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CAA 72 bp TTTGCTCCCAACTTCCAGTCCCAGGAGGTTGTCAGTTaGGGTGGGACTTTTTCTGTAGCAGGATGCAGAAAC +
Preference number: 4 (lower is better)
Translates to: FAPNFQSQEVVS*GGTFSVAGCRN
Trigger: GTTTCTGCATCCTGCTACAGAAAAAGTCCCACCCAAACTGACAACCTCCTGGGACTGGAAGTTGGGAGCAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
3UTR CAA 72 bp GTTTCATTCACAGTAAAAGTGAGGTCTTGGGCCTACTaGCCAGATGCAAAGGAAAATAGAGCTGCCGAGAAC +
Preference number: 4 (lower is better)
Translates to: VSFTVKVRSWAY*PDAKENRAAEN
Trigger: GTTCTCGGCAGCTCTATTTTCCTTTGCATCTGGCAAGTAGGCCCAAGACCTCACTTTTACTGTGAATGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
CDS TCA 90 bp GGAGAGCGTAGAACATCAGGCACAGGGCCGCGGCCAAGAGGATCATaGTGCCCACGAAGGGCAGGTGGTTGTTCCGCCACAGCCTGGAGA +
Preference number: 5 (lower is better)
Translates to: GERRTSGTGPRPRGS*CPRRAGGCSATAWR
Trigger: TCTCCAGGCTGTGGCGGAACAACCACCTGCCCTTCGTGGGCATCATGATCCTCTTGGCCGCGGCCCTGTGCCTGATGTTCTACGCTCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074949.4
ENSMUST00000202999.2
CDS CCA 90 bp TCCACACGAAGGAGAGGAAGAGGCTTAGTCCTCCGGCCAACAGAATaGAGGATGCCGCCAGGAAGCACACGGCCAGCCGCCACTCTCCCT +
Preference number: 5 (lower is better)
Translates to: STRRRGRGLVLRPTE*RMPPGSTRPAATLP
Trigger: AGGGAGAGTGGCGGCTGGCCGTGTGCTTCCTGGCGGCATCCTCCATTCTGTTGGCCGGAGGACTAAGCCTCTTCCTCTCCTTCGTGTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
CDS TCA 90 bp CTCTGTTGTACTGGGCAAGGAGGAGAGGCAGAGGGACGAACACTGTaGGGACCAGGGCTCCATACACACCGAGCCTGGCCAGGGCTAGTC +
Preference number: 5 (lower is better)
Translates to: LCCTGQGGEAEGRTL*GPGLHTHRAWPGLV
Trigger: GACTAGCCCTGGCCAGGCTCGGTGTGTATGGAGCCCTGGTCCTCACAGTGTTCGTCCCTCTGCCTCTCCTCCTTGCCCAGTACAACAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
CDS-3UTR CAA 90 bp TCTACCACCAGTCACCTCTCTTCCTCCTGGGGCCTCCACCTTGACCCCTGTAAGACGAAGGGCAGGTGGTaGTTCCGCCACAGCCTGGAG +
Preference number: 5 (lower is better)
Translates to: STTSHLSSSWGLHLDPCKTKGRW*FRHSLE
Trigger: CTCCAGGCTGTGGCGGAACAACCACCTGCCCTTCGT...CTTACAGGGGTCAAGGTGGAGGCCCCAGGAGGAAGAGAGGTGACTGGTGGTAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
CDS-3UTR CAA 90 bp GAAACTGCAGGTACCCCAGCCCTCCAAGCCGCCTCTGGGTTCCTTGACACCACATCTCCCTCATCTCTGTaGTACTGGGCAAGGAGGAGA +
Preference number: 5 (lower is better)
Translates to: ETAGTPALQAASGFLDTTSPSSL*YWARRR
Trigger: TCTCCTCCTTGCCCAGTACAACAGAGATGAGGGAGA...TGTGGTGTCAAGGAACCCAGAGGCGGCTTGGAGGGCTGGGGTACCTGCAGTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
CDS-3UTR CAA 90 bp TGGCAATCCCAGCCCCGAGTTTCATTCACAGTAAAAGTGAGGTCTTGGGCCTACGGTAGGTCAGCGAGGTaGCCAGCCTTCCAGAGGAGA +
Preference number: 5 (lower is better)
Translates to: WQSQPRVSFTVKVRSWAYGRSAR*PAFQRR
Trigger: TCTCCTCTGGAAGGCTGGCAACCTCGCTGACCTACC...GTAGGCCCAAGACCTCACTTTTACTGTGAATGAAACTCGGGGCTGGGATTGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
CDS TCA 72 bp ACTGGGCAAGGAGGAGAGGCAGAGGGACGAACACTGTaGGGACCAGGGCTCCATACACACCGAGCCTGGCCA +
Preference number: 6 (lower is better)
Translates to: TGQGGEAEGRTL*GPGLHTHRAWP
Trigger: TGGCCAGGCTCGGTGTGTATGGAGCCCTGGTCCTCACAGTGTTCGTCCCTCTGCCTCTCCTCCTTGCCCAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
CDS TCA 72 bp CCATACACACCGAGCCTGGCCAGGGCTAGTCCAACCTaGGGAATGCCCAGCACGTCCAGCTCGGGAAAGTTG +
Preference number: 6 (lower is better)
Translates to: PYTPSLARASPT*GMPSTSSSGKL
Trigger: CAACTTTCCCGAGCTGGACGTGCTGGGCATTCCTCAGGTTGGACTAGCCCTGGCCAGGCTCGGTGTGTATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
CDS CCA 72 bp ACGGCCAGCCGCCACTCTCCCTCATCTCTGTTGTACTaGGCAAGGAGGAGAGGCAGAGGGACGAACACTGTG +
Preference number: 6 (lower is better)
Translates to: TASRHSPSSLLY*ARRRGRGTNTV
Trigger: CACAGTGTTCGTCCCTCTGCCTCTCCTCCTTGCCCAGTACAACAGAGATGAGGGAGAGTGGCGGCTGGCCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
CDS CCA 72 bp CTAACCGTGGCCACAAGCAAGAAGATGAGTAACAGCTaGGCTAGGCATAGAGCTGGCAAGGCAGGCCCCAGG +
Preference number: 6 (lower is better)
Translates to: LTVATSKKMSNS*ARHRAGKAGPR
Trigger: CCTGGGGCCTGCCTTGCCAGCTCTATGCCTAGCCCAGCTGTTACTCATCTTCTTGCTTGTGGCCACGGTTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4
CDS CCA 72 bp ACAGTTCTCCCACTGGTTCTTGTCCTCCTTATCCCGTaGCGGGAACCTAACCGTGGCCACAAGCAAGAAGAT +
Preference number: 6 (lower is better)
Translates to: TVLPLVLVLLIP*REPNRGHKQED
Trigger: ATCTTCTTGCTTGTGGCCACGGTTAGGTTCCCGCCACGGGATAAGGAGGACAAGAACCAGTGGGAGAACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074949.4