RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMEM132A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024736

Ensembl transcript IDs: ENSMUST00000025645.14, ENSMUST00000120524.2, ENSMUST00000238070.2

Found 253 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACTCGACTCGCTTCCGACGTCCCCCGGCTTCTTTGCGGGCCAGGGTaGTCGAGGAGCCAGCAGGGCTCTCTGAAGCACTGGGGGCCACGG +
Preference number: 1 (lower is better)
Translates to: TRLASDVPRLLCGPG*SRSQQGSLKHWGPR
Trigger: CCGTGGCCCCCAGTGCTTCAGAGAGCCCTGCTGGCTCCTCGAGCACCCTGGCCCGCAAAGAAGCCGGGGGACGTCGGAAGCGAGTCGAGT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR CCA 90 bp ACGGTGAGGTCCGGACAGGGCTGGATGGGAGGGCAGGAACTGGTGTaGGCAAAGGGGGCAACCCCAGCCAGGCGGTGCCTGATGCCAGGG +
Preference number: 1 (lower is better)
Translates to: TVRSGQGWMGGQELV*AKGATPARRCLMPG
Trigger: CCCTGGCATCAGGCACCGCCTGGCTGGGGTTGCCCCCTTTGCCCACACCAGTTCCTGCCCTCCCATCCAGCCCTGTCCGGACCTCACCGT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR TCA 90 bp GGCTCCCTGCTCTTCGGCTGGCAGAACAGCACTGGGCTCCTCAGCTaGGACCGACAGCCCCAGGTCATTGCGGTCGTAGAGCTCGGCTGG +
Preference number: 1 (lower is better)
Translates to: GSLLFGWQNSTGLLS*DRQPQVIAVVELGW
Trigger: CCAGCCGAGCTCTACGACCGCAATGACCTGGGGCTGTCGGTCTCAGCTGAGGAGCCCAGTGCTGTTCTGCCAGCCGAAGAGCAGGGAGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR CCA 90 bp AGGGGCAGCCCTTCGGCACCCACACCACTCACCACCACACCAAGCTaGGCTCCCTGCTCTTCGGCTGGCAGAACAGCACTGGGCTCCTCA +
Preference number: 1 (lower is better)
Translates to: RGSPSAPTPLTTTPS*APCSSAGRTALGSS
Trigger: TGAGGAGCCCAGTGCTGTTCTGCCAGCCGAAGAGCAGGGAGCCCAGCTTGGTGTGGTGGTGAGTGGTGTGGGTGCCGAAGGGCTGCCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR GCA 90 bp CCTTCGGCACCCACACCACTCACCACCACACCAAGCTGGGCTCCCTaGTCTTCGGCTGGCAGAACAGCACTGGGCTCCTCAGCTGAGACC +
Preference number: 1 (lower is better)
Translates to: PSAPTPLTTTPSWAP*SSAGRTALGSSAET
Trigger: GGTCTCAGCTGAGGAGCCCAGTGCTGTTCTGCCAGCCGAAGAGCAGGGAGCCCAGCTTGGTGTGGTGGTGAGTGGTGTGGGTGCCGAAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR CCA 90 bp CCACACCAAGCTGGGCTCCCTGCTCTTCGGCTGGCAGAACAGCACTaGGCTCCTCAGCTGAGACCGACAGCCCCAGGTCATTGCGGTCGT +
Preference number: 1 (lower is better)
Translates to: PHQAGLPALRLAEQH*APQLRPTAPGHCGR
Trigger: ACGACCGCAATGACCTGGGGCTGTCGGTCTCAGCTGAGGAGCCCAGTGCTGTTCTGCCAGCCGAAGAGCAGGGAGCCCAGCTTGGTGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR TCA 90 bp ACCTGCTATCTGCCGCTTTCCCTCCACCGTGGCTTCTGTGAACGGTaGGGTCCGGACAGGGCTGGATGGGAGGGCAGGAACTGGTGTGGG +
Preference number: 1 (lower is better)
Translates to: TCYLPLSLHRGFCER*GPDRAGWEGRNWCG
Trigger: CCCACACCAGTTCCTGCCCTCCCATCCAGCCCTGTCCGGACCTCACCGTTCACAGAAGCCACGGTGGAGGGAAAGCGGCAGATAGCAGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR TCA 90 bp GGTCAGGCAAGACGATTAGCCAGCGATCCCATTGGTCCCAGTGCCTaGGCTGGTGGGCCAAGCTGCCCCTGGCAGGTCAGGGAGTGGTCA +
Preference number: 1 (lower is better)
Translates to: GQARRLASDPIGPSA*AGGPSCPWQVREWS
Trigger: TGACCACTCCCTGACCTGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTGGCTAATCGTCTTGCCTGACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR GCA 90 bp TGGTGGGCCAAGCTGCCCCTGGCAGGTCAGGGAGTGGTCAGGAGCTaGCCCGGATCCTCTCCATGTAGTTTCGAAGCTCCTCTGGGTCCT +
Preference number: 1 (lower is better)
Translates to: WWAKLPLAGQGVVRS*PGSSPCSFEAPLGP
Trigger: AGGACCCAGAGGAGCTTCGAAACTACATGGAGAGGATCCGGGGCAGCTCCTGACCACTCCCTGACCTGCCAGGGGCAGCTTGGCCCACCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR GCA 90 bp CAAATGTCACAAACTCGACTCGCTTCCGACGTCCCCCGGCTTCTTTaGGGGCCAGGGTGCTCGAGGAGCCAGCAGGGCTCTCTGAAGCAC +
Preference number: 1 (lower is better)
Translates to: QMSQTRLASDVPRLL*GPGCSRSQQGSLKH
Trigger: GTGCTTCAGAGAGCCCTGCTGGCTCCTCGAGCACCCTGGCCCGCAAAGAAGCCGGGGGACGTCGGAAGCGAGTCGAGTTTGTGACATTTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR CCA 90 bp CCGAGGAAGAGCATCGGTCCAGCTGCCGACTCAGTTCCTCCTGATTaGTGCCCAGCCAGACCCAGTTATGTGGCTGAGGGGAGGCAGGGT +
Preference number: 1 (lower is better)
Translates to: PRKSIGPAADSVPPD*CPARPSYVAEGRQG
Trigger: ACCCTGCCTCCCCTCAGCCACATAACTGGGTCTGGCTGGGCACCAATCAGGAGGAACTGAGTCGGCAGCTGGACCGATGCTCTTCCTCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR TCA 90 bp CCATATCACCTGCTATCTGCCGCTTTCCCTCCACCGTGGCTTCTGTaGACGGTGAGGTCCGGACAGGGCTGGATGGGAGGGCAGGAACTG +
Preference number: 1 (lower is better)
Translates to: PYHLLSAAFPPPWLL*TVRSGQGWMGGQEL
Trigger: CAGTTCCTGCCCTCCCATCCAGCCCTGTCCGGACCTCACCGTTCACAGAAGCCACGGTGGAGGGAAAGCGGCAGATAGCAGGTGATATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR GCA 90 bp AGGAAGAGCATCGGTCCAGCTGCCGACTCAGTTCCTCCTGATTGGTaGCCAGCCAGACCCAGTTATGTGGCTGAGGGGAGGCAGGGTCTG +
Preference number: 1 (lower is better)
Translates to: RKSIGPAADSVPPDW*PARPSYVAEGRQGL
Trigger: CAGACCCTGCCTCCCCTCAGCCACATAACTGGGTCTGGCTGGGCACCAATCAGGAGGAACTGAGTCGGCAGCTGGACCGATGCTCTTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR CCA 90 bp TCAGGAGCTGCCCCGGATCCTCTCCATGTAGTTTCGAAGCTCCTCTaGGTCCTTCAGCCCCATGTCCTCGCACACCCAGCGGATGTCCTC +
Preference number: 1 (lower is better)
Translates to: SGAAPDPLHVVSKLL*VLQPHVLAHPADVL
Trigger: GAGGACATCCGCTGGGTGTGCGAGGACATGGGGCTGAAGGACCCAGAGGAGCTTCGAAACTACATGGAGAGGATCCGGGGCAGCTCCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR CCA 90 bp CCGACTCAGTTCCTCCTGATTGGTGCCCAGCCAGACCCAGTTATGTaGCTGAGGGGAGGCAGGGTCTGTAGCGCTGTCTGGAGGCTCTTT +
Preference number: 1 (lower is better)
Translates to: PTQFLLIGAQPDPVM*LRGGRVCSAVWRLF
Trigger: AAAGAGCCTCCAGACAGCGCTACAGACCCTGCCTCCCCTCAGCCACATAACTGGGTCTGGCTGGGCACCAATCAGGAGGAACTGAGTCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR CCA 90 bp GCCACACGGAAGAAAGAGCACGGAGGGAAGAGAGACACAGGCGAATaGACAAAACACAGGGAGAGAGGGGACGCGTGTCAATCACCTGTC +
Preference number: 1 (lower is better)
Translates to: ATRKKEHGGKRDTGE*TKHRERGDACQSPV
Trigger: GACAGGTGATTGACACGCGTCCCCTCTCTCCCTGTGTTTTGTCCATTCGCCTGTGTCTCTCTTCCCTCCGTGCTCTTTCTTCCGTGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR-3UTR GCA 90 bp GTCCTCCTCACCTGCCACCAGGATGGACTGTACAGCGGGGGCCCCTACAGGCTCCTTTGCGGGCCAGGGTaGTCGAGGAGCCAGCAGGGC +
Preference number: 2 (lower is better)
Translates to: VLLTCHQDGLYSGGPYRLLCGPG*SRSQQG
Trigger: GCCCTGCTGGCTCCTCGAGCACCCTGGCCCGCAAAG...GAGCCTGTAGGGGCCCCCGCTGTACAGTCCATCCTGGTGGCAGGTGAGGAGGAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR-3UTR GCA 90 bp GGGTGCTCGAGGAGCCAGCAGGGCTCTCTGAAGCACTGGGGGCCACGGTTGAGGTCCCATTGGTCCCAGTaGCTGAGCTGGTGGGCCAAG +
Preference number: 2 (lower is better)
Translates to: GCSRSQQGSLKHWGPRLRSHWSQ*LSWWAK
Trigger: CTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGA...CCTCAACCGTGGCCCCCAGTGCTTCAGAGAGCCCTGCTGGCTCCTCGAGCACCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR-3UTR GCA 90 bp GGGTGCAGAGCCACGTGTAGGGGCAGCCCTTCGGCACCCACACCACTCACCACCCCAAGCTGGGCTCCCTaGTCTTCGGCTGGCAGAACA +
Preference number: 2 (lower is better)
Translates to: GCRATCRGSPSAPTPLTTPSWAP*SSAGRT
Trigger: TGTTCTGCCAGCCGAAGAGCAGGGAGCCCAGCTTGG...GGTGGTGAGTGGTGTGGGTGCCGAAGGGCTGCCCCTACACGTGGCTCTGCACCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR-3UTR CCA 90 bp GGGTGCTCGAGGAGCCAGCAGGGCTCTCTGAAGCACTGGGGGCCACGGTTGAGGGTCGTAGAGCTCGGCTaGGGCCAAAGTGTGGTCAGA +
Preference number: 2 (lower is better)
Translates to: GCSRSQQGSLKHWGPRLRVVELG*GQSVVR
Trigger: TCTGACCACACTTTGGCCCCAGCCGAGCTCTACGAC...CCTCAACCGTGGCCCCCAGTGCTTCAGAGAGCCCTGCTGGCTCCTCGAGCACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR CAA 90 bp GCAAATGTCACAAACTCGACTCGCTTCCGACGTCCCCCGGCTTCTTaGCGGGCCAGGGTGCTCGAGGAGCCAGCAGGGCTCTCTGAAGCA +
Preference number: 2 (lower is better)
Translates to: ANVTNSTRFRRPPAS*RARVLEEPAGLSEA
Trigger: TGCTTCAGAGAGCCCTGCTGGCTCCTCGAGCACCCTGGCCCGCAAAGAAGCCGGGGGACGTCGGAAGCGAGTCGAGTTTGTGACATTTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR-3UTR GCA 90 bp CAGCGGATGTCCTCCTCACCTGCCACCAGGATGGACTGTACAGCGGGGGCCCCTACTCCAGCCAGCCACTaGTTCATCACTTCCAGCCAG +
Preference number: 2 (lower is better)
Translates to: QRMSSSPATRMDCTAGAPTPASH*FITSSQ
Trigger: CTGGCTGGAAGTGATGAAGCAGTGGCTGGCTGGAGT...AGGGGCCCCCGCTGTACAGTCCATCCTGGTGGCAGGTGAGGAGGACATCCGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR-3UTR GCA 90 bp AAGAGCATCGGTCCAGCTGCCGACTCAGTTCCTCCTGATTGGTGCCCAGCCAGAGAGAGGGCCACCTCCTaGAGGGCACACGGACACAAG +
Preference number: 2 (lower is better)
Translates to: KSIGPAADSVPPDWCPARERATS*RAHGHK
Trigger: CTTGTGTCCGTGTGCCCTGCAGGAGGTGGCCCTCTC...TCTGGCTGGGCACCAATCAGGAGGAACTGAGTCGGCAGCTGGACCGATGCTCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR-3UTR CCA 90 bp GCGAATGGACAAAACACAGGGAGAGAGGGGACGCGTGTCAATCACCTGTCTGCCCAGTGCCTGAGCTGGTaGGCCAAGCTGCCCCTGGCA +
Preference number: 2 (lower is better)
Translates to: ANGQNTGREGTRVNHLSAQCLSW*AKLPLA
Trigger: TGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTG...GGCAGACAGGTGATTGACACGCGTCCCCTCTCTCCCTGTGTTTTGTCCATTCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR-3UTR TCA 90 bp GCCCAGGGGTCTGAGTCCTCAGGAACACCTAATGAACCTCCCAACGCCATACTCATTGGTCCCAGTGCCTaGGCTGGTGGGCCAAGCTGC +
Preference number: 2 (lower is better)
Translates to: AQGSESSGTPNEPPNAILIGPSA*AGGPSC
Trigger: GCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAAT...GAGTATGGCGTTGGGAGGTTCATTAGGTGTTCCTGAGGACTCAGACCCCTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR-3UTR GCA 90 bp AATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGGGGTCCCATTGGTCCCAGTaGCTGAGCTGGTGGGCCAAG +
Preference number: 2 (lower is better)
Translates to: NKGHAPSLLTIVHDKGWGSHWSQ*LSWWAK
Trigger: CTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGA...CCCCCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
3UTR-3UTR CCA 90 bp GGGTGCTCGAGGAGCCAGCAGGGCTCTCTGAAGCACTGGGGGCCACGGTTGAGGAGAGACACAGGCGAATaGACAAAACACAGGGAGAGA +
Preference number: 2 (lower is better)
Translates to: GCSRSQQGSLKHWGPRLRRDTGE*TKHRER
Trigger: TCTCTCCCTGTGTTTTGTCCATTCGCCTGTGTCTCT...CCTCAACCGTGGCCCCCAGTGCTTCAGAGAGCCCTGCTGGCTCCTCGAGCACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR-3UTR TCA 90 bp ACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGATTGGTCCCAGTGCCTaGGCTGGTGGGCCAAGCTGC +
Preference number: 2 (lower is better)
Translates to: TQQGTQINKHQRMRMRVRIGPSA*AGGPSC
Trigger: GCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAAT...CCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
3UTR-3UTR TCA 90 bp CAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAACTGGGCTCCTCAGCTaGGACCGACAGCCCCAGGTC +
Preference number: 2 (lower is better)
Translates to: QQGTQINKHQRMRMRVRQTGLLS*DRQPQV
Trigger: GACCTGGGGCTGTCGGTCTCAGCTGAGGAGCCCAGT...TTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR-3UTR CCA 90 bp GGATCCTCTCCATGTAGTTTCGAAGCTCCTCTGGGTCCTTCAGCCCCATGTCCTTGGGAGGGCAGGAACTaGTGTGGGCAAAGGGGGCAA +
Preference number: 2 (lower is better)
Translates to: GSSPCSFEAPLGPSAPCPWEGRN*CGQRGQ
Trigger: TTGCCCCCTTTGCCCACACCAGTTCCTGCCCTCCCA...AGGACATGGGGCTGAAGGACCCAGAGGAGCTTCGAAACTACATGGAGAGGATCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR-3UTR CCA 90 bp AGAGAGACACAGGCGAATGGACAAAACACAGGGAGAGAGGGGACGCGTGTCAATAGCCAGCGATCCCATTaGTCCCAGTGCCTGAGCTGG +
Preference number: 2 (lower is better)
Translates to: RETQANGQNTGREGTRVNSQRSH*SQCLSW
Trigger: CCAGCTCAGGCACTGGGACCAATGGGATCGCTGGCT...ATTGACACGCGTCCCCTCTCTCCCTGTGTTTTGTCCATTCGCCTGTGTCTCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR-3UTR GCA 90 bp CAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGTTCCTCCTGATTGGTaGCCAGCCAGACCCAGTTAT +
Preference number: 2 (lower is better)
Translates to: QQGTQINKHQRMRMRVRQVPPDW*PARPSY
Trigger: ATAACTGGGTCTGGCTGGGCACCAATCAGGAGGAAC...TTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR-3UTR GCA 90 bp GGATCCTCTCCATGTAGTTTCGAAGCTCCTCTGGGTCCTTCAGCCCCATGTCCTTGGCCAAACAGAAGATaGCCAGAAGAGCATACATCC +
Preference number: 2 (lower is better)
Translates to: GSSPCSFEAPLGPSAPCPWPNRR*PEEHTS
Trigger: GGATGTATGCTCTTCTGGGCATCTTCTGTTTGGCCA...AGGACATGGGGCTGAAGGACCCAGAGGAGCTTCGAAACTACATGGAGAGGATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR CCA 72 bp CCCAGCCAGGCGGTGCCTGATGCCAGGGGAACGCGATaGCGGCCCCGGCGGCAGGGTTCGGGTGGGTGCAGA +
Preference number: 3 (lower is better)
Translates to: PSQAVPDARGTR*RPRRQGSGGCR
Trigger: TCTGCACCCACCCGAACCCTGCCGCCGGGGCCGCCATCGCGTTCCCCTGGCATCAGGCACCGCCTGGCTGGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR GCA 72 bp CAAACTCGACTCGCTTCCGACGTCCCCCGGCTTCTTTaGGGGCCAGGGTGCTCGAGGAGCCAGCAGGGCTCT +
Preference number: 3 (lower is better)
Translates to: QTRLASDVPRLL*GPGCSRSQQGS
Trigger: AGAGCCCTGCTGGCTCCTCGAGCACCCTGGCCCGCAAAGAAGCCGGGGGACGTCGGAAGCGAGTCGAGTTTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR TCA 72 bp CTGCTATCTGCCGCTTTCCCTCCACCGTGGCTTCTGTaGACGGTGAGGTCCGGACAGGGCTGGATGGGAGGG +
Preference number: 3 (lower is better)
Translates to: LLSAAFPPPWLL*TVRSGQGWMGG
Trigger: CCCTCCCATCCAGCCCTGTCCGGACCTCACCGTTCACAGAAGCCACGGTGGAGGGAAAGCGGCAGATAGCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR GCA 72 bp GGCAAGACGATTAGCCAGCGATCCCATTGGTCCCAGTaGCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAGGT +
Preference number: 3 (lower is better)
Translates to: GKTISQRSHWSQ*LSWWAKLPLAG
Trigger: ACCTGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTGGCTAATCGTCTTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
3UTR CCA 72 bp CCTTCGGCACCCACACCACTCACCACCACACCAAGCTaGGCTCCCTGCTCTTCGGCTGGCAGAACAGCACTG +
Preference number: 3 (lower is better)
Translates to: PSAPTPLTTTPS*APCSSAGRTAL
Trigger: CAGTGCTGTTCTGCCAGCCGAAGAGCAGGGAGCCCAGCTTGGTGTGGTGGTGAGTGGTGTGGGTGCCGAAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR-3UTR CAA 90 bp CAGCGGATGTCCTCCTCACCTGCCACCAGGATGGACTGTACAGCGGGGGCCCCTCATGCGCCCTCCCTCTaGACCATAGTCCATGACAAG +
Preference number: 3 (lower is better)
Translates to: QRMSSSPATRMDCTAGAPHAPSL*TIVHDK
Trigger: CTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATG...AGGGGCCCCCGCTGTACAGTCCATCCTGGTGGCAGGTGAGGAGGACATCCGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR CCA 72 bp CCCTACAGGCTCCTCAGGCGGCTGGGTTGGGGGTGCTaGTGCAAATGTCACAAACTCGACTCGCTTCCGACG +
Preference number: 3 (lower is better)
Translates to: PYRLLRRLGWGC*CKCHKLDSLPT
Trigger: CGTCGGAAGCGAGTCGAGTTTGTGACATTTGCACCAGCACCCCCAACCCAGCCGCCTGAGGAGCCTGTAGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR GCA 72 bp ATCGGTCCAGCTGCCGACTCAGTTCCTCCTGATTGGTaGCCAGCCAGACCCAGTTATGTGGCTGAGGGGAGG +
Preference number: 3 (lower is better)
Translates to: IGPAADSVPPDW*PARPSYVAEGR
Trigger: CCTCCCCTCAGCCACATAACTGGGTCTGGCTGGGCACCAATCAGGAGGAACTGAGTCGGCAGCTGGACCGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR GCA 72 bp AAGCTGCCCCTGGCAGGTCAGGGAGTGGTCAGGAGCTaGCCCGGATCCTCTCCATGTAGTTTCGAAGCTCCT +
Preference number: 3 (lower is better)
Translates to: KLPLAGQGVVRS*PGSSPCSFEAP
Trigger: AGGAGCTTCGAAACTACATGGAGAGGATCCGGGGCAGCTCCTGACCACTCCCTGACCTGCCAGGGGCAGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR CCA 72 bp TTCCTCCTGATTGGTGCCCAGCCAGACCCAGTTATGTaGCTGAGGGGAGGCAGGGTCTGTAGCGCTGTCTGG +
Preference number: 3 (lower is better)
Translates to: FLLIGAQPDPVM*LRGGRVCSAVW
Trigger: CCAGACAGCGCTACAGACCCTGCCTCCCCTCAGCCACATAACTGGGTCTGGCTGGGCACCAATCAGGAGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR-3UTR CAA 90 bp GGGTGCTCGAGGAGCCAGCAGGGCTCTCTGAAGCACTGGGGGCCACGGTTGAGGGGAAGTAGTCCTTATTaGGAAAACCCCAGAGCAAGC +
Preference number: 3 (lower is better)
Translates to: GCSRSQQGSLKHWGPRLRGSSPY*ENPRAS
Trigger: GCTTGCTCTGGGGTTTTCCAAATAAGGACTACTTCC...CCTCAACCGTGGCCCCCAGTGCTTCAGAGAGCCCTGCTGGCTCCTCGAGCACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR TCA 72 bp AGAGCATACATCCCCAGCTCTAGGTCGGTGACACGCTaGGGGGCAGGCACCATCTCTTCCTCATCTTCCTCC +
Preference number: 3 (lower is better)
Translates to: RAYIPSSRSVTR*GAGTISSSSSS
Trigger: GGAGGAAGATGAGGAAGAGATGGTGCCTGCCCCTCAGCGTGTCACCGACCTAGAGCTGGGGATGTATGCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR TCA 72 bp TGCCCAGAAGAGCATACATCCCCAGCTCTAGGTCGGTaGCACGCTGAGGGGCAGGCACCATCTCTTCCTCAT +
Preference number: 3 (lower is better)
Translates to: CPEEHTSPALGR*HAEGQAPSLPH
Trigger: ATGAGGAAGAGATGGTGCCTGCCCCTCAGCGTGTCACCGACCTAGAGCTGGGGATGTATGCTCTTCTGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR CCA 72 bp AAGAAAGAGCACGGAGGGAAGAGAGACACAGGCGAATaGACAAAACACAGGGAGAGAGGGGACGCGTGTCAA +
Preference number: 3 (lower is better)
Translates to: KKEHGGKRDTGE*TKHRERGDACQ
Trigger: TTGACACGCGTCCCCTCTCTCCCTGTGTTTTGTCCATTCGCCTGTGTCTCTCTTCCCTCCGTGCTCTTTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
3UTR CCA 72 bp GAGAACTCACTACCTCACAGGGAAGTAGTCCTTATTTaGAAAACCCCAGAGCAAGCGGTCCACATACCAGGG +
Preference number: 3 (lower is better)
Translates to: ENSLPHREVVLI*KTPEQAVHIPG
Trigger: CCCTGGTATGTGGACCGCTTGCTCTGGGGTTTTCCAAATAAGGACTACTTCCCTGTGAGGTAGTGAGTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp CCAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCTCTGCTTCGGGGGCCTaGCCTGGGTACTCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: PAIPLVPVPELVGQAAPGSASGA*PGYSSC
Trigger: GCAGCTGGAGTACCCAGGTCAGGCCCCCGAAGCAGA...GCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp ATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAGGTCACCCAGGGCCCTCGCCTaGAGGCTCCAGCGTGTAGGC +
Preference number: 4 (lower is better)
Translates to: IPLVPVPELVGQAAPGRSPRALA*RLQRVG
Trigger: GCCTACACGCTGGAGCCTGCAGGCGAGGGCCCTGGG...TGACCTGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGAT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp CCAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCCCAGCTCTCTGGTACTaGAGGCGGCAGCCACGGGAG +
Preference number: 4 (lower is better)
Translates to: PAIPLVPVPELVGQAAPGPALWY*RRQPRE
Trigger: CTCCCGTGGCTGCCGCCTGCAGTACCAGAGAGCTGG...GCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAGGCTCCTCAGGCGGCTaGGTTGGGGGTGCTGGTGCA +
Preference number: 4 (lower is better)
Translates to: QRSHWSQCLSWWAKLPLAGSSGG*VGGAGA
Trigger: TGCACCAGCACCCCCAACCCAGCCGCCTGAGGAGCC...TGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR TCA 90 bp CCAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCGCAGAAGGGTGGCAGTaGAGAGCTGGCCAGGCCTCA +
Preference number: 4 (lower is better)
Translates to: PAIPLVPVPELVGQAAPGAEGWQ*RAGQAS
Trigger: TGAGGCCTGGCCAGCTCTTCACTGCCACCCTTCTGC...GCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp CAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAGCAGGCCCAGCACGGTaGCAGGTGATCAGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: QRSHWSQCLSWWAKLPLAAGPAR*QVIRLV
Trigger: CACCAGCCTGATCACCTGTCACCGTGCTGGGCCTGC...TGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp CAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCACCAGCTCTAGGTCGGTaGCACGCTGAGGGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: QRSHWSQCLSWWAKLPLAPALGR*HAEGQA
Trigger: TGCCTGCCCCTCAGCGTGTCACCGACCTAGAGCTGG...TGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR GCA 90 bp GGGTGCAGAGCCACGTGTAGGGGCAGCCCTTCGGCACCCACACCACTCACCACCCCCGTCCCACTAGGATaGGGCCACCTTCCAAGGAGG +
Preference number: 4 (lower is better)
Translates to: GCRATCRGSPSAPTPLTTPVPLG*GHLPRR
Trigger: CCTCCTTGGAAGGTGGCCGCATCCTAGTGGGACGGG...GGTGGTGAGTGGTGTGGGTGCCGAAGGGCTGCCCCTACACGTGGCTCTGCACCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp ATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAGGTCACTTTGCGGGCCAGGGTaGTCGAGGAGCCAGCAGGGC +
Preference number: 4 (lower is better)
Translates to: IPLVPVPELVGQAAPGRSLCGPG*SRSQQG
Trigger: GCCCTGCTGGCTCCTCGAGCACCCTGGCCCGCAAAG...TGACCTGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR CCA 90 bp CCAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCTTCGGGGGCCTGACCTaGGTACTCCAGCTGCCACGT +
Preference number: 4 (lower is better)
Translates to: PAIPLVPVPELVGQAAPGFGGLT*VLQLPR
Trigger: ACGTGGCAGCTGGAGTACCCAGGTCAGGCCCCCGAA...GCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
3UTR CAA 72 bp ACAAACTCGACTCGCTTCCGACGTCCCCCGGCTTCTTaGCGGGCCAGGGTGCTCGAGGAGCCAGCAGGGCTC +
Preference number: 4 (lower is better)
Translates to: TNSTRFRRPPAS*RARVLEEPAGL
Trigger: GAGCCCTGCTGGCTCCTCGAGCACCCTGGCCCGCAAAGAAGCCGGGGGACGTCGGAAGCGAGTCGAGTTTGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp CCAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCTGGGCCAGGGCTGCATaGGCAGGAAAGTCTCAGAGC +
Preference number: 4 (lower is better)
Translates to: PAIPLVPVPELVGQAAPGWARAA*AGKSQS
Trigger: GCTCTGAGACTTTCCTGCTCATGCAGCCCTGGCCCA...GCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp CCAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCCAGCACGGTGACAGGTaGTCAGGCTGGTGTGGTGCT +
Preference number: 4 (lower is better)
Translates to: PAIPLVPVPELVGQAAPGQHGDR*SGWCGA
Trigger: AGCACCACACCAGCCTGATCACCTGTCACCGTGCTG...GCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp CAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCACCCCACTGTCCACAGTaGCGAGCCGCACCGGAATAC +
Preference number: 4 (lower is better)
Translates to: QRSHWSQCLSWWAKLPLAPHCPQ*RAAPEY
Trigger: GTATTCCGGTGCGGCTCGTCACTGTGGACAGTGGGG...TGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp CAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCACCCACTGGGAGAGCCTaGTCCCTGGGTTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: QRSHWSQCLSWWAKLPLAPTGRA*SLGSSS
Trigger: AGAGGAGGAACCCAGGGAGCAGGCTCTCCCAGTGGG...TGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp CCAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCACAGCCCCAGGTCATTaGGGTCGTAGAGCTCGGCTG +
Preference number: 4 (lower is better)
Translates to: PAIPLVPVPELVGQAAPGTAPGH*GRRARL
Trigger: CAGCCGAGCTCTACGACCGCAATGACCTGGGGCTGT...GCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR GCA 90 bp ATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAGGTCACCTGGGTACTCCAGCTaGCACGTGACAGGGCGAGTG +
Preference number: 4 (lower is better)
Translates to: IPLVPVPELVGQAAPGRSPGYSS*HVTGRV
Trigger: CACTCGCCCTGTCACGTGGCAGCTGGAGTACCCAGG...TGACCTGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CAGCGGATGTCCTCCTCACCTGCCACCAGGATGGACTGTACAGCGGGGGCCCCTGGACCACCTGCTGAGTaGCAAAGGGTGGGTAGGAGG +
Preference number: 4 (lower is better)
Translates to: QRMSSSPATRMDCTAGAPGPPAE*QRVGRR
Trigger: CCTCCTACCCACCCTTTGCCACTCAGCAGGTGGTCC...AGGGGCCCCCGCTGTACAGTCCATCCTGGTGGCAGGTGAGGAGGACATCCGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp GGAACTGGTGTGGGCAAAGGGGGCAACCCCAGCCAGGCGGTGCCTGATGCCAGGGTGGCAGTGAAGAGCTaGCCAGGCCTCATTGGCACA +
Preference number: 4 (lower is better)
Translates to: GTGVGKGGNPSQAVPDARVAVKS*PGLIGT
Trigger: TGTGCCAATGAGGCCTGGCCAGCTCTTCACTGCCAC...CCTGGCATCAGGCACCGCCTGGCTGGGGTTGCCCCCTTTGCCCACACCAGTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CCAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCGTCGTAGAGCTCGGCTaGGGCCAAAGTGTGGTCAGA +
Preference number: 4 (lower is better)
Translates to: PAIPLVPVPELVGQAAPGVVELG*GQSVVR
Trigger: TCTGACCACACTTTGGCCCCAGCCGAGCTCTACGAC...GCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR CCA 90 bp CAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCATGGGAGGGCAGGAACTaGTGTGGGCAAAGGGGGCAA +
Preference number: 4 (lower is better)
Translates to: QRSHWSQCLSWWAKLPLAWEGRN*CGQRGQ
Trigger: TTGCCCCCTTTGCCCACACCAGTTCCTGCCCTCCCA...TGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR CCA 90 bp CAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCACTCAGGCGGCTGGGTTaGGGGTGCTGGTGCAAATGT +
Preference number: 4 (lower is better)
Translates to: QRSHWSQCLSWWAKLPLALRRLG*GCWCKC
Trigger: ACATTTGCACCAGCACCCCCAACCCAGCCGCCTGAG...TGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR GCA 90 bp AATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGGGGACCCCAGCCAGGCGGTaGCTGATGCCAGGGGAACGC +
Preference number: 4 (lower is better)
Translates to: NKGHAPSLLTIVHDKGWGTPARR*LMPGER
Trigger: GCGTTCCCCTGGCATCAGGCACCGCCTGGCTGGGGT...CCCCCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR CCA 90 bp ATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAGGTCAGGACCACCTGCTGAGTaGCAAAGGGTGGGTAGGAGG +
Preference number: 4 (lower is better)
Translates to: IPLVPVPELVGQAAPGRSGPPAE*QRVGRR
Trigger: CCTCCTACCCACCCTTTGCCACTCAGCAGGTGGTCC...TGACCTGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CGAGGGGACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGGACAGGCCGCCGGTaGGGCTCGGTGACCCTAGGA +
Preference number: 4 (lower is better)
Translates to: RGDPAGDSDQQAPEDENEGTGRR*GSVTLG
Trigger: TCCTAGGGTCACCGAGCCCCACCGGCGGCCTGTCCC...CTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGTCCCCTCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CCAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCGTTCGGCCCTTGTGGTaGCACTTTGGGAGAACCAGT +
Preference number: 4 (lower is better)
Translates to: PAIPLVPVPELVGQAAPGVRPLW*HFGRTS
Trigger: ACTGGTTCTCCCAAAGTGCCACCACAAGGGCCGAAC...GCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp ATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAGGTCAGCTGGAAGAGCTGACTaGGCCCAGCATGTGGCTGTG +
Preference number: 4 (lower is better)
Translates to: IPLVPVPELVGQAAPGRSAGRAD*AQHVAV
Trigger: CACAGCCACATGCTGGGCCCAGTCAGCTCTTCCAGC...TGACCTGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp GGGAAGAGAGACACAGGCGAATGGACAAAACACAGGGAGAGAGGGGACGCGTGTCCACCGTCCAGCGGGTaGGCCGCAAAGGGCACCAAG +
Preference number: 4 (lower is better)
Translates to: GKRDTGEWTKHRERGDACPPSSG*AAKGTK
Trigger: CTTGGTGCCCTTTGCGGCTCACCCGCTGGACGGTGG...ACACGCGTCCCCTCTCTCCCTGTGTTTTGTCCATTCGCCTGTGTCTCTCTTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp GTCCTCCTCACCTGCCACCAGGATGGACTGTACAGCGGGGGCCCCTACAGGCTCTCGCAGATCCAGCACTaGGACCTTGTCGTCTGTCAC +
Preference number: 4 (lower is better)
Translates to: VLLTCHQDGLYSGGPYRLSQIQH*DLVVCH
Trigger: GTGACAGACGACAAGGTCTCAGTGCTGGATCTGCGA...GAGCCTGTAGGGGCCCCCGCTGTACAGTCCATCCTGGTGGCAGGTGAGGAGGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp TCCTCAGGCGGCTGGGTTGGGGGTGCTGGTGCAAATGTCACAAACTCGACTCGCCCGGCTCAAGGACAGTaGGATGCCCATCACCGGCTG +
Preference number: 4 (lower is better)
Translates to: SSGGWVGGAGANVTNSTRPAQGQ*DAHHRL
Trigger: CAGCCGGTGATGGGCATCTCACTGTCCTTGAGCCGG...GCGAGTCGAGTTTGTGACATTTGCACCAGCACCCCCAACCCAGCCGCCTGAGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp CGAGGGGACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGCCGGAGAAGCGGCTGTaGCCTGGGCCAGGGCTGCAT +
Preference number: 4 (lower is better)
Translates to: RGDPAGDSDQQAPEDENEPEKRL*PGPGLH
Trigger: ATGCAGCCCTGGCCCAGGGCACAGCCGCTTCTCCGG...CTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGTCCCCTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp GGGTGCTCGAGGAGCCAGCAGGGCTCTCTGAAGCACTGGGGGCCACGGTTGAGGCGGGCAGCTATCACCTaGAGCCCTTTCTTCACCTTA +
Preference number: 4 (lower is better)
Translates to: GCSRSQQGSLKHWGPRLRRAAIT*SPFFTL
Trigger: TAAGGTGAAGAAAGGGCTGCAGGTGATAGCTGCCCG...CCTCAACCGTGGCCCCCAGTGCTTCAGAGAGCCCTGCTGGCTCCTCGAGCACCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp AATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGGGGCCAGCTCTCTGGTACTaGAGGCGGCAGCCACGGGAG +
Preference number: 4 (lower is better)
Translates to: NKGHAPSLLTIVHDKGWGPALWY*RRQPRE
Trigger: CTCCCGTGGCTGCCGCCTGCAGTACCAGAGAGCTGG...CCCCCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp CGAGGAAGAGCATCGGTCCAGCTGCCGACTCAGTTCCTCCTGATTGGTGCCCAGCCCCCGGCCATCACCTaGTTTGGGGCTGGAAGAGCT +
Preference number: 4 (lower is better)
Translates to: RGRASVQLPTQFLLIGAQPPAIT*FGAGRA
Trigger: AGCTCTTCCAGCCCCAAAGCAGGTGATGGCCGGGGG...CTGGGCACCAATCAGGAGGAACTGAGTCGGCAGCTGGACCGATGCTCTTCCTCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp GTCCTCCTCACCTGCCACCAGGATGGACTGTACAGCGGGGGCCCCTACAGGCTCCCACTGGCAGGTAGATaGGGTCCAGGGTATCATGGT +
Preference number: 4 (lower is better)
Translates to: VLLTCHQDGLYSGGPYRLPLAGR*GPGYHG
Trigger: ACCATGATACCCTGGACCCCATCTACCTGCCAGTGG...GAGCCTGTAGGGGCCCCCGCTGTACAGTCCATCCTGGTGGCAGGTGAGGAGGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp ATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAGGTCAGTGGCAGTGAAGAGCTaGCCAGGCCTCATTGGCACA +
Preference number: 4 (lower is better)
Translates to: IPLVPVPELVGQAAPGRSVAVKS*PGLIGT
Trigger: TGTGCCAATGAGGCCTGGCCAGCTCTTCACTGCCAC...TGACCTGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp AATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGGGGAAGGGGGCTGGAATCTaGCCCTGCAGGCCCAGCACG +
Preference number: 4 (lower is better)
Translates to: NKGHAPSLLTIVHDKGWGKGAGI*PCRPST
Trigger: CGTGCTGGGCCTGCAGGGCCAGATTCCAGCCCCCTT...CCCCCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp ATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAGGTCAGGGCACTCCAGTCAATaGAGCCGTGTTCACCAGCTC +
Preference number: 4 (lower is better)
Translates to: IPLVPVPELVGQAAPGRSGHSSQ*SRVHQL
Trigger: GAGCTGGTGAACACGGCTCCATTGACTGGAGTGCCC...TGACCTGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp ATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAGGTCACGCACCGGAATACGCTaGGGCACTCCAGTCAATGGA +
Preference number: 4 (lower is better)
Translates to: IPLVPVPELVGQAAPGRSRTGIR*GTPVNG
Trigger: TCCATTGACTGGAGTGCCCCAGCGTATTCCGGTGCG...TGACCTGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CCAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCCTGGGTTGGGGGTGCTaGTGCAAATGTCACAAACTC +
Preference number: 4 (lower is better)
Translates to: PAIPLVPVPELVGQAAPGLGWGC*CKCHKL
Trigger: GAGTTTGTGACATTTGCACCAGCACCCCCAACCCAG...GCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR TCA 90 bp CGAGGGGACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGCAGGCCCAGCACGGTaGCAGGTGATCAGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: RGDPAGDSDQQAPEDENEAGPAR*QVIRLV
Trigger: CACCAGCCTGATCACCTGTCACCGTGCTGGGCCTGC...CTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGTCCCCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp GGGAAGAGAGACACAGGCGAATGGACAAAACACAGGGAGAGAGGGGACGCGTGTTCTGCTTCGGGGGCCTaGCCTGGGTACTCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: GKRDTGEWTKHRERGDACSASGA*PGYSSC
Trigger: GCAGCTGGAGTACCCAGGTCAGGCCCCCGAAGCAGA...ACACGCGTCCCCTCTCTCCCTGTGTTTTGTCCATTCGCCTGTGTCTCTCTTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp ATAAATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGCCCAGGGCCCTCGCCTaGAGGCTCCAGCGTGTAGGC +
Preference number: 4 (lower is better)
Translates to: INKGHAPSLLTIVHDKGWPRALA*RLQRVG
Trigger: GCCTACACGCTGGAGCCTGCAGGCGAGGGCCCTGGG...CCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATTTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp ATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAGGTCACCACACCCCCACCAGTaGTGTTCTCCACTGCAAAGT +
Preference number: 4 (lower is better)
Translates to: IPLVPVPELVGQAAPGRSPHPHQ*CSPLQS
Trigger: ACTTTGCAGTGGAGAACAGCACTGGTGGGGGTGTGG...TGACCTGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp AATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGGGGCCTGGGTACTCCAGCTaGCACGTGACAGGGCGAGTG +
Preference number: 4 (lower is better)
Translates to: NKGHAPSLLTIVHDKGWGPGYSS*HVTGRV
Trigger: CACTCGCCCTGTCACGTGGCAGCTGGAGTACCCAGG...CCCCCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp AATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGGGGCCCGTCCCACTAGGATaGGGCCACCTTCCAAGGAGG +
Preference number: 4 (lower is better)
Translates to: NKGHAPSLLTIVHDKGWGPVPLG*GHLPRR
Trigger: CCTCCTTGGAAGGTGGCCGCATCCTAGTGGGACGGG...CCCCCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp GACTCAGTTCCTCCTGATTGGTGCCCAGCCAGACCCAGTTATGTGGCTGAGGGGGTCTGTCACAGCCAGTaGCTGCTCCCCCAGGATGGC +
Preference number: 4 (lower is better)
Translates to: DSVPPDWCPARPSYVAEGVCHSQ*LLPQDG
Trigger: GCCATCCTGGGGGAGCAGGCACTGGCTGTGACAGAC...CCCCTCAGCCACATAACTGGGTCTGGCTGGGCACCAATCAGGAGGAACTGAGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp TCCTCAGGCGGCTGGGTTGGGGGTGCTGGTGCAAATGTCACAAACTCGACTCGCCTGAGTGGCAAAGGGTaGGTAGGAGGCCCGGAGAAG +
Preference number: 4 (lower is better)
Translates to: SSGGWVGGAGANVTNSTRLSGKG*VGGPEK
Trigger: CTTCTCCGGGCCTCCTACCCACCCTTTGCCACTCAG...GCGAGTCGAGTTTGTGACATTTGCACCAGCACCCCCAACCCAGCCGCCTGAGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp ATAAATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGGGGACAGGCCGCCGGTaGGGCTCGGTGACCCTAGGA +
Preference number: 4 (lower is better)
Translates to: INKGHAPSLLTIVHDKGWGTGRR*GSVTLG
Trigger: TCCTAGGGTCACCGAGCCCCACCGGCGGCCTGTCCC...CCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATTTAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CGAGGGGACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGAAGCGGCAGGCTCGGTaGGCAGTGCCTGCAGGGTGT +
Preference number: 4 (lower is better)
Translates to: RGDPAGDSDQQAPEDENEKRQAR*AVPAGC
Trigger: ACACCCTGCAGGCACTGCCCACCGAGCCTGCCGCTT...CTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGTCCCCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp GCCCAGGGGTCTGAGTCCTCAGGAACACCTAATGAACCTCCCAACGCCATACTCAAGCGGCAGGCTCGGTaGGCAGTGCCTGCAGGGTGT +
Preference number: 4 (lower is better)
Translates to: AQGSESSGTPNEPPNAILKRQAR*AVPAGC
Trigger: ACACCCTGCAGGCACTGCCCACCGAGCCTGCCGCTT...GAGTATGGCGTTGGGAGGTTCATTAGGTGTTCCTGAGGACTCAGACCCCTGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CGAGGGGACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGCACCCCGGCTCTCCTaGCCAGCCACGAACACAGCA +
Preference number: 4 (lower is better)
Translates to: RGDPAGDSDQQAPEDENEAPRLS*PATNTA
Trigger: TGCTGTGTTCGTGGCTGGCCAGGAGAGCCGGGGTGC...CTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGTCCCCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAACCACCCTCACCCCCTTaGCACCCCGGCTCTCCTGGC +
Preference number: 4 (lower is better)
Translates to: QQGTQINKHQRMRMRVRQPPSPP*HPGSPG
Trigger: GCCAGGAGAGCCGGGGTGCCAAGGGGGTGAGGGTGG...TTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CGAGGAAGAGCATCGGTCCAGCTGCCGACTCAGTTCCTCCTGATTGGTGCCCAGCGAGGATCTTGCACATaGGCATGGGCTGCCACGAGG +
Preference number: 4 (lower is better)
Translates to: RGRASVQLPTQFLLIGAQRGSCT*AWAATR
Trigger: CCTCGTGGCAGCCCATGCCCATGTGCAAGATCCTCG...CTGGGCACCAATCAGGAGGAACTGAGTCGGCAGCTGGACCGATGCTCTTCCTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp ATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAGGTCAGTTTCGAAGCTCCTCTaGGTCCTTCAGCCCCATGTC +
Preference number: 4 (lower is better)
Translates to: IPLVPVPELVGQAAPGRSVSKLL*VLQPHV
Trigger: GACATGGGGCTGAAGGACCCAGAGGAGCTTCGAAAC...TGACCTGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR TCA 90 bp AATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGGGGGCCAATCCTGCCCTTTaGGGTGGAAGAGGACACGGG +
Preference number: 4 (lower is better)
Translates to: NKGHAPSLLTIVHDKGWGANPAL*GGRGHG
Trigger: CCCGTGTCCTCTTCCACCTCAAAGGGCAGGATTGGC...CCCCCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATT
60% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp CAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAACCACCGTCCAGCGGGTaGGCCGCAAAGGGCACCAAG +
Preference number: 4 (lower is better)
Translates to: QQGTQINKHQRMRMRVRQPPSSG*AAKGTK
Trigger: CTTGGTGCCCTTTGCGGCTCACCCGCTGGACGGTGG...TTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp GCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTAGCCAGCGATCCCATTCCGGAGAAGCGGCTGTaGCCTGGGCCAGGGCTGCAT +
Preference number: 4 (lower is better)
Translates to: APEDENEGQARRLASDPIPEKRL*PGPGLH
Trigger: ATGCAGCCCTGGCCCAGGGCACAGCCGCTTCTCCGG...AATGGGATCGCTGGCTAATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp GCGAATGGACAAAACACAGGGAGAGAGGGGACGCGTGTCAATCACCTGTCTGCCCCCACTGGGAGAGCCTaGTCCCTGGGTTCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: ANGQNTGREGTRVNHLSAPTGRA*SLGSSS
Trigger: AGAGGAGGAACCCAGGGAGCAGGCTCTCCCAGTGGG...GGCAGACAGGTGATTGACACGCGTCCCCTCTCTCCCTGTGTTTTGTCCATTCGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp ATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAGGTCACGGGCAGCTATCACCTaGAGCCCTTTCTTCACCTTA +
Preference number: 4 (lower is better)
Translates to: IPLVPVPELVGQAAPGRSRAAIT*SPFFTL
Trigger: TAAGGTGAAGAAAGGGCTGCAGGTGATAGCTGCCCG...TGACCTGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp CAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAAGTGCTGTTCTCCACTaGAAAGTCCACCCACAGGAA +
Preference number: 4 (lower is better)
Translates to: QRSHWSQCLSWWAKLPLASAVLH*KVHPQE
Trigger: TTCCTGTGGGTGGACTTTGCAGTGGAGAACAGCACT...TGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp CAGCGGATGTCCTCCTCACCTGCCACCAGGATGGACTGTACAGCGGGGGCCCCTAGTGCTGTTCTCCACTaGAAAGTCCACCCACAGGAA +
Preference number: 4 (lower is better)
Translates to: QRMSSSPATRMDCTAGAPSAVLH*KVHPQE
Trigger: TTCCTGTGGGTGGACTTTGCAGTGGAGAACAGCACT...AGGGGCCCCCGCTGTACAGTCCATCCTGGTGGCAGGTGAGGAGGACATCCGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp AATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGGGGGCTGCCAGGTCCTGGTaGCCAATCCTGCCCTTTGAG +
Preference number: 4 (lower is better)
Translates to: NKGHAPSLLTIVHDKGWGAARSW*PILPFE
Trigger: CTCAAAGGGCAGGATTGGCCACCAGGACCTGGCAGC...CCCCCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATT
60% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CAAATGTCACAAACTCGACTCGCTTCCGACGTCCCCCGGCTTCTTTGCGGGCCAGCTGCCAGGTCCTGGTaGCCAATCCTGCCCTTTGAG +
Preference number: 4 (lower is better)
Translates to: QMSQTRLASDVPRLLCGPAARSW*PILPFE
Trigger: CTCAAAGGGCAGGATTGGCCACCAGGACCTGGCAGC...TGGCCCGCAAAGAAGCCGGGGGACGTCGGAAGCGAGTCGAGTTTGTGACATTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CAGGTCATTGCGGTCGTAGAGCTCGGCTGGGGCCAAAGTGTGGTCAGAGAAGGATGCCTGCAGGGTGTGTaGCATGTAGTCGGGCACAGG +
Preference number: 4 (lower is better)
Translates to: QVIAVVELGWGQSVVREGCLQGV*HVVGHR
Trigger: CCTGTGCCCGACTACATGCCACACACCCTGCAGGCA...TCCTTCTCTGACCACACTTTGGCCCCAGCCGAGCTCTACGACCGCAATGACCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CAAATGTCACAAACTCGACTCGCTTCCGACGTCCCCCGGCTTCTTTGCGGGCCAGGAGAGCCTGCTCCCTaGGTTCCTCCTCTGTGCCAA +
Preference number: 4 (lower is better)
Translates to: QMSQTRLASDVPRLLCGPGEPAP*VPPLCQ
Trigger: TTGGCACAGAGGAGGAACCCAGGGAGCAGGCTCTCC...TGGCCCGCAAAGAAGCCGGGGGACGTCGGAAGCGAGTCGAGTTTGTGACATTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp ACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCTCCACACCACCCACTaGGAGAGCCTGCTCCCTGGG +
Preference number: 4 (lower is better)
Translates to: TQQGTQINKHQRMRMRVRLHTTH*ESLLPG
Trigger: CCCAGGGAGCAGGCTCTCCCAGTGGGTGGTGTGGAG...CCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CGAGGAAGAGCATCGGTCCAGCTGCCGACTCAGTTCCTCCTGATTGGTGCCCAGCTGGCCAGGCCTCATTaGCACATCAGGTGCACGCAA +
Preference number: 4 (lower is better)
Translates to: RGRASVQLPTQFLLIGAQLARPH*HIRCTQ
Trigger: TTGCGTGCACCTGATGTGCCAATGAGGCCTGGCCAG...CTGGGCACCAATCAGGAGGAACTGAGTCGGCAGCTGGACCGATGCTCTTCCTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp ACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGAAGGGGGCTGGAATCTaGCCCTGCAGGCCCAGCACG +
Preference number: 4 (lower is better)
Translates to: TQQGTQINKHQRMRMRVRKGAGI*PCRPST
Trigger: CGTGCTGGGCCTGCAGGGCCAGATTCCAGCCCCCTT...CCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp CAAATGTCACAAACTCGACTCGCTTCCGACGTCCCCCGGCTTCTTTGCGGGCCACCTGGTGGCCAATCCTaGCCTTTGAGGTGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: QMSQTRLASDVPRLLCGPPGGQS*PLRWKR
Trigger: CCTCTTCCACCTCAAAGGGCAGGATTGGCCACCAGG...TGGCCCGCAAAGAAGCCGGGGGACGTCGGAAGCGAGTCGAGTTTGTGACATTTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp ACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGGTCTGTCACAGCCAGTaGCTGCTCCCCCAGGATGGC +
Preference number: 4 (lower is better)
Translates to: TQQGTQINKHQRMRMRVRVCHSQ*LLPQDG
Trigger: GCCATCCTGGGGGAGCAGGCACTGGCTGTGACAGAC...CCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp CGAGGGGACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGCCAAGCTGGGCTCCCTaGTCTTCGGCTGGCAGAACA +
Preference number: 4 (lower is better)
Translates to: RGDPAGDSDQQAPEDENEPSWAP*SSAGRT
Trigger: TGTTCTGCCAGCCGAAGAGCAGGGAGCCCAGCTTGG...CTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGTCCCCTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR CCA 90 bp CGAGGGGACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGTGCCTGCAGGGTGTGTaGCATGTAGTCGGGCACAGG +
Preference number: 4 (lower is better)
Translates to: RGDPAGDSDQQAPEDENECLQGV*HVVGHR
Trigger: CCTGTGCCCGACTACATGCCACACACCCTGCAGGCA...CTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGTCCCCTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAACTCCACACCACCCACTaGGAGAGCCTGCTCCCTGGG +
Preference number: 4 (lower is better)
Translates to: QQGTQINKHQRMRMRVRQLHTTH*ESLLPG
Trigger: CCCAGGGAGCAGGCTCTCCCAGTGGGTGGTGTGGAG...TTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp GTAGTCCTTATTTGGAAAACCCCAGAGCAAGCGGTCCACATACCAGGGCCCACTCCTGCTCCCCCAGGATaGCGTCAGACAGCGGGGAAC +
Preference number: 4 (lower is better)
Translates to: VVLIWKTPEQAVHIPGPTPAPPG*RQTAGN
Trigger: GTTCCCCGCTGTCTGACGCCATCCTGGGGGAGCAGG...AGTGGGCCCTGGTATGTGGACCGCTTGCTCTGGGGTTTTCCAAATAAGGACTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CGAGGGGACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGACCACCACACCAAGCTaGGCTCCCTGCTCTTCGGCT +
Preference number: 4 (lower is better)
Translates to: RGDPAGDSDQQAPEDENETTTPS*APCSSA
Trigger: AGCCGAAGAGCAGGGAGCCCAGCTTGGTGTGGTGGT...CTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGTCCCCTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR CCA 90 bp CGAGGGGACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGCCAGACCCAGTTATGTaGCTGAGGGGAGGCAGGGTC +
Preference number: 4 (lower is better)
Translates to: RGDPAGDSDQQAPEDENEPDPVM*LRGGRV
Trigger: GACCCTGCCTCCCCTCAGCCACATAACTGGGTCTGG...CTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGTCCCCTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR TCA 90 bp ATAAATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGGCAGAAGGGTGGCAGTaGAGAGCTGGCCAGGCCTCA +
Preference number: 4 (lower is better)
Translates to: INKGHAPSLLTIVHDKGWAEGWQ*RAGQAS
Trigger: TGAGGCCTGGCCAGCTCTTCACTGCCACCCTTCTGC...CCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATTTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp GCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTAGCCAGCGATCCCATTCCCCACTGTCCACAGTaGCGAGCCGCACCGGAATAC +
Preference number: 4 (lower is better)
Translates to: APEDENEGQARRLASDPIPHCPQ*RAAPEY
Trigger: GTATTCCGGTGCGGCTCGTCACTGTGGACAGTGGGG...AATGGGATCGCTGGCTAATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp GCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTAGCCAGCGATCCCATTCCGGCTCAAGGACAGTaGGATGCCCATCACCGGCTG +
Preference number: 4 (lower is better)
Translates to: APEDENEGQARRLASDPIPAQGQ*DAHHRL
Trigger: CAGCCGGTGATGGGCATCTCACTGTCCTTGAGCCGG...AATGGGATCGCTGGCTAATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp CAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGGGCACAGGGCAAGCTaGCAGGTCCTGGTGGCCAAT +
Preference number: 4 (lower is better)
Translates to: QQGTQINKHQRMRMRVRQGHRAS*QVLVAN
Trigger: ATTGGCCACCAGGACCTGGCAGCTTGCCCTGTGCCC...TTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp ATAAATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGGGGCACAGGGCAAGCTaGCAGGTCCTGGTGGCCAAT +
Preference number: 4 (lower is better)
Translates to: INKGHAPSLLTIVHDKGWGHRAS*QVLVAN
Trigger: ATTGGCCACCAGGACCTGGCAGCTTGCCCTGTGCCC...CCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATTTAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp AATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGGGGCCACACCCCCACCAGTaGTGTTCTCCACTGCAAAGT +
Preference number: 4 (lower is better)
Translates to: NKGHAPSLLTIVHDKGWGPHPHQ*CSPLQS
Trigger: ACTTTGCAGTGGAGAACAGCACTGGTGGGGGTGTGG...CCCCCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp GCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTAGCCAGCGATCCCATTGTCACAGCCAGTGCCTaGTCCCCCAGGATGGCGTCA +
Preference number: 4 (lower is better)
Translates to: APEDENEGQARRLASDPIVTASA*SPRMAS
Trigger: TGACGCCATCCTGGGGGAGCAGGCACTGGCTGTGAC...AATGGGATCGCTGGCTAATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp CAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGTCACAGCCAGTGCCTaGTCCCCCAGGATGGCGTCA +
Preference number: 4 (lower is better)
Translates to: QQGTQINKHQRMRMRVRQVTASA*SPRMAS
Trigger: TGACGCCATCCTGGGGGAGCAGGCACTGGCTGTGAC...TTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp GCCCAGGGGTCTGAGTCCTCAGGAACACCTAATGAACCTCCCAACGCCATACTCCGCACCGGAATACGCTaGGGCACTCCAGTCAATGGA +
Preference number: 4 (lower is better)
Translates to: AQGSESSGTPNEPPNAILRTGIR*GTPVNG
Trigger: TCCATTGACTGGAGTGCCCCAGCGTATTCCGGTGCG...GAGTATGGCGTTGGGAGGTTCATTAGGTGTTCCTGAGGACTCAGACCCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp GGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATCCTGCTCCCCCAGGATaGCGTCAGACAGCGGGGAAC +
Preference number: 4 (lower is better)
Translates to: GTQINKHQRMRMRVRQDDPAPPG*RQTAGN
Trigger: GTTCCCCGCTGTCTGACGCCATCCTGGGGGAGCAGG...ATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp ACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGGCTGGAAGAGCTGACTaGGCCCAGCATGTGGCTGTG +
Preference number: 4 (lower is better)
Translates to: TQQGTQINKHQRMRMRVRAGRAD*AQHVAV
Trigger: CACAGCCACATGCTGGGCCCAGTCAGCTCTTCCAGC...CCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp GCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTAGCCAGCGATCCCATTGGGCAGGAACTGGTGTaGGCAAAGGGGGCAACCCCA +
Preference number: 4 (lower is better)
Translates to: APEDENEGQARRLASDPIGQELV*AKGATP
Trigger: TGGGGTTGCCCCCTTTGCCCACACCAGTTCCTGCCC...AATGGGATCGCTGGCTAATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR CCA 90 bp GCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTAGCCAGCGATCCCATTCCGGACAGGGCTGGATaGGAGGGCAGGAACTGGTGT +
Preference number: 4 (lower is better)
Translates to: APEDENEGQARRLASDPIPDRAG*EGRNWC
Trigger: ACACCAGTTCCTGCCCTCCCATCCAGCCCTGTCCGG...AATGGGATCGCTGGCTAATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR TCA 90 bp CAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAATGGGCCAGGGCTGCATaGGCAGGAAAGTCTCAGAGC +
Preference number: 4 (lower is better)
Translates to: QQGTQINKHQRMRMRVRQWARAA*AGKSQS
Trigger: GCTCTGAGACTTTCCTGCTCATGCAGCCCTGGCCCA...TTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp GCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTAGCCAGCGATCCCATTGCCAATCCTGCCCTTTaGGGTGGAAGAGGACACGGG +
Preference number: 4 (lower is better)
Translates to: APEDENEGQARRLASDPIANPAL*GGRGHG
Trigger: CCCGTGTCCTCTTCCACCTCAAAGGGCAGGATTGGC...AATGGGATCGCTGGCTAATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp GCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTAGCCAGCGATCCCATTGCCCTGGGCCAGGGCTaGATGAGCAGGAAAGTCTCA +
Preference number: 4 (lower is better)
Translates to: APEDENEGQARRLASDPIALGQG*MSRKVS
Trigger: TGAGACTTTCCTGCTCATGCAGCCCTGGCCCAGGGC...AATGGGATCGCTGGCTAATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp GCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTAGCCAGCGATCCCATTTGCTGGAGTCACCGCTaGTTCCACGGAAACAGCCCG +
Preference number: 4 (lower is better)
Translates to: APEDENEGQARRLASDPICWSHR*FHGNSP
Trigger: CGGGCTGTTTCCGTGGAAGCAGCGGTGACTCCAGCA...AATGGGATCGCTGGCTAATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp CGAGGGGACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGATCAGGCTGGTGTGGTaGTTTGAGCCCTTGAAGCGG +
Preference number: 4 (lower is better)
Translates to: RGDPAGDSDQQAPEDENEIRLVW*FEPLKR
Trigger: CCGCTTCAAGGGCTCAAAGCACCACACCAGCCTGAT...CTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGTCCCCTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp CGAGGGGACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGCATTTTGTCCTTCTCTaGTTCGGGGGCCTGACCTGG +
Preference number: 4 (lower is better)
Translates to: RGDPAGDSDQQAPEDENEHFVLL*FGGLTW
Trigger: CCAGGTCAGGCCCCCGAAGCAGAGAAGGACAAAATG...CTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGTCCCCTCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp AATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGGGGCAGGCCTCAGATACCTaGAGGACCTGTGTATTGGCT +
Preference number: 4 (lower is better)
Translates to: NKGHAPSLLTIVHDKGWGQASDT*RTCVLA
Trigger: AGCCAATACACAGGTCCTGCAGGTATCTGAGGCCTG...CCCCCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp ACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGAGGCCAGGGAAGAGTTaGCAGGTGGGTAATGGCCCA +
Preference number: 4 (lower is better)
Translates to: TQQGTQINKHQRMRMRVRRPGKS*QVGNGP
Trigger: TGGGCCATTACCCACCTGCCAACTCTTCCCTGGCCT...CCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp ATAAATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGCTGAGTGGCAAAGGGTaGGTAGGAGGCCCGGAGAAG +
Preference number: 4 (lower is better)
Translates to: INKGHAPSLLTIVHDKGWLSGKG*VGGPEK
Trigger: CTTCTCCGGGCCTCCTACCCACCCTTTGCCACTCAG...CCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATTTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGGAGAGCCTGCTCCCTaGGTTCCTCCTCTGTGCCAA +
Preference number: 4 (lower is better)
Translates to: QQGTQINKHQRMRMRVRQGEPAP*VPPLCQ
Trigger: TTGGCACAGAGGAGGAACCCAGGGAGCAGGCTCTCC...TTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp GGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTTCGGGGGCCTGACCTaGGTACTCCAGCTGCCACGT +
Preference number: 4 (lower is better)
Translates to: GTQINKHQRMRMRVRQDDFGGLT*VLQLPR
Trigger: ACGTGGCAGCTGGAGTACCCAGGTCAGGCCCCCGAA...ATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp ACCTCACAGGGAAGTAGTCCTTATTTGGAAAACCCCAGAGCAAGCGGTCCACATGCACCCCGGCTCTCCTaGCCAGCCACGAACACAGCA +
Preference number: 4 (lower is better)
Translates to: TSQGSSPYLENPRASGPHAPRLS*PATNTA
Trigger: TGCTGTGTTCGTGGCTGGCCAGGAGAGCCGGGGTGC...ATGTGGACCGCTTGCTCTGGGGTTTTCCAAATAAGGACTACTTCCCTGTGAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp ATAAATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGCGAGGATCTTGCACATaGGCATGGGCTGCCACGAGG +
Preference number: 4 (lower is better)
Translates to: INKGHAPSLLTIVHDKGWRGSCT*AWAATR
Trigger: CCTCGTGGCAGCCCATGCCCATGTGCAAGATCCTCG...CCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATTTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp GGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATAGGTCCGGACAGGGCTaGATGGGAGGGCAGGAACTG +
Preference number: 4 (lower is better)
Translates to: GTQINKHQRMRMRVRQDDRSGQG*MGGQEL
Trigger: CAGTTCCTGCCCTCCCATCCAGCCCTGTCCGGACCT...ATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR GCA 90 bp GGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTGCTGGAGTCACCGCTaGTTCCACGGAAACAGCCCG +
Preference number: 4 (lower is better)
Translates to: GTQINKHQRMRMRVRQDDCWSHR*FHGNSP
Trigger: CGGGCTGTTTCCGTGGAAGCAGCGGTGACTCCAGCA...ATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp ATAAATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGCCTGGTGGCCAATCCTaGCCTTTGAGGTGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: INKGHAPSLLTIVHDKGWPGGQS*PLRWKR
Trigger: CCTCTTCCACCTCAAAGGGCAGGATTGGCCACCAGG...CCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATTTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp GGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATGAGAGGGCCACCTCCTaGTTTGGGGCTGGAAGAGCT +
Preference number: 4 (lower is better)
Translates to: GTQINKHQRMRMRVRQDDERATS*FGAGRA
Trigger: AGCTCTTCCAGCCCCAAAGCAGGAGGTGGCCCTCTC...ATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR CCA 90 bp GTAGTCCTTATTTGGAAAACCCCAGAGCAAGCGGTCCACATACCAGGGCCCACTGGAAGAGTTGGCAGGTaGGTAATGGCCCACCTGCTG +
Preference number: 4 (lower is better)
Translates to: VVLIWKTPEQAVHIPGPTGRVGR*VMAHLL
Trigger: CAGCAGGTGGGCCATTACCCACCTGCCAACTCTTCC...AGTGGGCCCTGGTATGTGGACCGCTTGCTCTGGGGTTTTCCAAATAAGGACTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp GCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTAGCCAGCGATCCCATTCAAGCTGCCAGGTCCTaGTGGCCAATCCTGCCCTTT +
Preference number: 4 (lower is better)
Translates to: APEDENEGQARRLASDPIQAARS*WPILPF
Trigger: AAAGGGCAGGATTGGCCACCAGGACCTGGCAGCTTG...AATGGGATCGCTGGCTAATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp ACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGGTTCGGCCCTTGTGGTaGCACTTTGGGAGAACCAGT +
Preference number: 4 (lower is better)
Translates to: TQQGTQINKHQRMRMRVRVRPLW*HFGRTS
Trigger: ACTGGTTCTCCCAAAGTGCCACCACAAGGGCCGAAC...CCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp CAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAACTGGCCAGGCCTCATTaGCACATCAGGTGCACGCAA +
Preference number: 4 (lower is better)
Translates to: QQGTQINKHQRMRMRVRQLARPH*HIRCTQ
Trigger: TTGCGTGCACCTGATGTGCCAATGAGGCCTGGCCAG...TTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp ACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCTTTGGGAGAACCAGTaGGAGGGGAATTGCAGTTCC +
Preference number: 4 (lower is better)
Translates to: TQQGTQINKHQRMRMRVRLWENQ*EGNCSS
Trigger: GGAACTGCAATTCCCCTCTCACTGGTTCTCCCAAAG...CCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp ACCTCACAGGGAAGTAGTCCTTATTTGGAAAACCCCAGAGCAAGCGGTCCACATCAGCACGGTGACAGGTaGTCAGGCTGGTGTGGTGCT +
Preference number: 4 (lower is better)
Translates to: TSQGSSPYLENPRASGPHQHGDR*SGWCGA
Trigger: AGCACCACACCAGCCTGATCACCTGTCACCGTGCTG...ATGTGGACCGCTTGCTCTGGGGTTTTCCAAATAAGGACTACTTCCCTGTGAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR TCA 90 bp CAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAATCGCAGATCCAGCACTaGGACCTTGTCGTCTGTCAC +
Preference number: 4 (lower is better)
Translates to: QQGTQINKHQRMRMRVRQSQIQH*DLVVCH
Trigger: GTGACAGACGACAAGGTCTCAGTGCTGGATCTGCGA...TTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp ACCTCACAGGGAAGTAGTCCTTATTTGGAAAACCCCAGAGCAAGCGGTCCACATGCCCTGGGCCAGGGCTaGATGAGCAGGAAAGTCTCA +
Preference number: 4 (lower is better)
Translates to: TSQGSSPYLENPRASGPHALGQG*MSRKVS
Trigger: TGAGACTTTCCTGCTCATGCAGCCCTGGCCCAGGGC...ATGTGGACCGCTTGCTCTGGGGTTTTCCAAATAAGGACTACTTCCCTGTGAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp GCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTAGCCAGCGATCCCATTATCAGGCTGGTGTGGTaGTTTGAGCCCTTGAAGCGG +
Preference number: 4 (lower is better)
Translates to: APEDENEGQARRLASDPIIRLVW*FEPLKR
Trigger: CCGCTTCAAGGGCTCAAAGCACCACACCAGCCTGAT...AATGGGATCGCTGGCTAATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp CAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAACGGCTGGGTTGGGGGTaGTGGTGCAAATGTCACAAA +
Preference number: 4 (lower is better)
Translates to: QQGTQINKHQRMRMRVRQRLGWG*WCKCHK
Trigger: TTTGTGACATTTGCACCAGCACCCCCAACCCAGCCG...TTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR CCA 90 bp GCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTAGCCAGCGATCCCATTCCACTGGCAGGTAGATaGGGTCCAGGGTATCATGGT +
Preference number: 4 (lower is better)
Translates to: APEDENEGQARRLASDPIPLAGR*GPGYHG
Trigger: ACCATGATACCCTGGACCCCATCTACCTGCCAGTGG...AATGGGATCGCTGGCTAATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp GGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATGGAAGAGTTGGCAGGTaGGTAATGGCCCACCTGCTG +
Preference number: 4 (lower is better)
Translates to: GTQINKHQRMRMRVRQDDGRVGR*VMAHLL
Trigger: CAGCAGGTGGGCCATTACCCACCTGCCAACTCTTCC...ATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp GGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATCAAGCTGCCAGGTCCTaGTGGCCAATCCTGCCCTTT +
Preference number: 4 (lower is better)
Translates to: GTQINKHQRMRMRVRQDDQAARS*WPILPF
Trigger: AAAGGGCAGGATTGGCCACCAGGACCTGGCAGCTTG...ATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp ATAAATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGTCAGTTCCTCCTGATTaGTGCCCAGCCAGACCCAGT +
Preference number: 4 (lower is better)
Translates to: INKGHAPSLLTIVHDKGWSVPPD*CPARPS
Trigger: ACTGGGTCTGGCTGGGCACCAATCAGGAGGAACTGA...CCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATTTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR GCA 90 bp CAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAACAGGCCTCAGATACCTaGAGGACCTGTGTATTGGCT +
Preference number: 4 (lower is better)
Translates to: QQGTQINKHQRMRMRVRQQASDT*RTCVLA
Trigger: AGCCAATACACAGGTCCTGCAGGTATCTGAGGCCTG...TTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp ATAAATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGGGTTGGGGGTGCTGGTaGAAATGTCACAAACTCGAC +
Preference number: 4 (lower is better)
Translates to: INKGHAPSLLTIVHDKGWGWGCW*KCHKLD
Trigger: GTCGAGTTTGTGACATTTGCACCAGCACCCCCAACC...CCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATTTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR CCA 90 bp ACCTCACAGGGAAGTAGTCCTTATTTGGAAAACCCCAGAGCAAGCGGTCCACATGGGCACTCCAGTCAATaGAGCCGTGTTCACCAGCTC +
Preference number: 4 (lower is better)
Translates to: TSQGSSPYLENPRASGPHGHSSQ*SRVHQL
Trigger: GAGCTGGTGAACACGGCTCCATTGACTGGAGTGCCC...ATGTGGACCGCTTGCTCTGGGGTTTTCCAAATAAGGACTACTTCCCTGTGAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp GGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATGTTCCTCCTGATTGGTaGCCAGCCAGACCCAGTTAT +
Preference number: 4 (lower is better)
Translates to: GTQINKHQRMRMRVRQDDVPPDW*PARPSY
Trigger: ATAACTGGGTCTGGCTGGGCACCAATCAGGAGGAAC...ATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS-3UTR CCA 90 bp CAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGCAGGACCTGTGTATTaGCTGACTCACAGCCAATGT +
Preference number: 4 (lower is better)
Translates to: QQGTQINKHQRMRMRVRQAGPVY*LTHSQC
Trigger: ACATTGGCTGTGAGTCAGCCAATACACAGGTCCTGC...TTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CCA 90 bp AGAGAGACACAGGCGAATGGACAAAACACAGGGAGAGAGGGGACGCGTGTCAATGCAGGACCTGTGTATTaGCTGACTCACAGCCAATGT +
Preference number: 4 (lower is better)
Translates to: RETQANGQNTGREGTRVNAGPVY*LTHSQC
Trigger: ACATTGGCTGTGAGTCAGCCAATACACAGGTCCTGC...ATTGACACGCGTCCCCTCTCTCCCTGTGTTTTGTCCATTCGCCTGTGTCTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp GGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTGCTGCACACGAAAATaGTCAGGGGCATCTAGGAGT +
Preference number: 4 (lower is better)
Translates to: GTQINKHQRMRMRVRQDDCCTRK*SGASRS
Trigger: ACTCCTAGATGCCCCTGAGCATTTTCGTGTGCAGCA...ATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR GCA 90 bp ATAAATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGTGGCCAAACAGAAGATaGCCAGAAGAGCATACATCC +
Preference number: 4 (lower is better)
Translates to: INKGHAPSLLTIVHDKGWWPNRR*PEEHTS
Trigger: GGATGTATGCTCTTCTGGGCATCTTCTGTTTGGCCA...CCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
3UTR CAA 72 bp AGAGAACTCACTACCTCACAGGGAAGTAGTCCTTATTaGGAAAACCCCAGAGCAAGCGGTCCACATACCAGG +
Preference number: 4 (lower is better)
Translates to: RELTTSQGSSPY*ENPRASGPHTR
Trigger: CCTGGTATGTGGACCGCTTGCTCTGGGGTTTTCCAAATAAGGACTACTTCCCTGTGAGGTAGTGAGTTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS GCA 90 bp CACAGGCACCCAGAGATGGCTGGAAGCGGCAGGCTCGGTGGGCAGTaGCTGCAGGGTGTGTGGCATGTAGTCGGGCACAGGGCAAGCTGC +
Preference number: 5 (lower is better)
Translates to: HRHPEMAGSGRLGGQ*LQGVWHVVGHRASC
Trigger: GCAGCTTGCCCTGTGCCCGACTACATGCCACACACCCTGCAGGCACTGCCCACCGAGCCTGCCGCTTCCAGCCATCTCTGGGTGCCTGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS TCA 90 bp TCAGGACCGAGTAGGTGGGTGAGGCGACGGCCACCGTCCAGCGGGTaGGCCGCAAAGGGCACCAAGAAGCGCACACCAGCTCTCTGGTAC +
Preference number: 5 (lower is better)
Translates to: SGPSRWVRRRPPSSG*AAKGTKKRTPALWY
Trigger: GTACCAGAGAGCTGGTGTGCGCTTCTTGGTGCCCTTTGCGGCTCACCCGCTGGACGGTGGCCGTCGCCTCACCCACCTACTCGGTCCTGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS TCA 90 bp CGAGGTGACTCACATCCAGCAACCAGTCAGGACCGAGTAGGTGGGTaGGGCGACGGCCACCGTCCAGCGGGTGAGCCGCAAAGGGCACCA +
Preference number: 5 (lower is better)
Translates to: RGDSHPATSQDRVGG*GDGHRPAGEPQRAP
Trigger: TGGTGCCCTTTGCGGCTCACCCGCTGGACGGTGGCCGTCGCCTCACCCACCTACTCGGTCCTGACTGGTTGCTGGATGTGAGTCACCTCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS GCA 90 bp CTGCTGAGTGGCAAAGGGTGGGTAGGAGGCCCGGAGAAGCGGCTGTaGCCTGGGCCAGGGCTGCATGAGCAGGAAAGTCTCAGAGCGGGA +
Preference number: 5 (lower is better)
Translates to: LLSGKGWVGGPEKRL*PGPGLHEQESLRAG
Trigger: TCCCGCTCTGAGACTTTCCTGCTCATGCAGCCCTGGCCCAGGGCACAGCCGCTTCTCCGGGCCTCCTACCCACCCTTTGCCACTCAGCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
ENSMUST00000238070.2
CDS CCA 90 bp CGCCACCAGAAGTCCACCCTCACCCCCTTGGCACCCCGGCTCTCCTaGCCAGCCACGAACACAGCATCACAGGCCTCAGATACCTGCAGG +
Preference number: 5 (lower is better)
Translates to: RHQKSTLTPLAPRLS*PATNTASQASDTCR
Trigger: CCTGCAGGTATCTGAGGCCTGTGATGCTGTGTTCGTGGCTGGCCAGGAGAGCCGGGGTGCCAAGGGGGTGAGGGTGGACTTCTGGTGGCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CAA 90 bp CAGCGATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAGCTGGCCAGGCCTCATaGGCACATCAGGTGCACGCA +
Preference number: 5 (lower is better)
Translates to: QRSHWSQCLSWWAKLPLAAGQAS*AHQVHA
Trigger: TGCGTGCACCTGATGTGCCAATGAGGCCTGGCCAGC...TGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGATCGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS GCA 90 bp GAGGTGGAAGAGGACACGGGCATAGGGTTCTGCTGGAGTCACCGCTaGTTCCACGGAAACAGCCCGCACATCCCAAGGGACAGGCCGCCG +
Preference number: 5 (lower is better)
Translates to: EVEEDTGIGFCWSHR*FHGNSPHIPRDRPP
Trigger: CGGCGGCCTGTCCCTTGGGATGTGCGGGCTGTTTCCGTGGAAGCAGCGGTGACTCCAGCAGAACCCTATGCCCGTGTCCTCTTCCACCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CAA 90 bp ATCCCATTGGTCCCAGTGCCTGAGCTGGTGGGCCAAGCTGCCCCTGGCAGGTCAACCAGCTCCTCAGCCTaGGCCAGAGGGATGAGGGCT +
Preference number: 5 (lower is better)
Translates to: IPLVPVPELVGQAAPGRSTSSSA*ARGMRA
Trigger: AGCCCTCATCCCTCTGGCCAAGGCTGAGGAGCTGGT...TGACCTGCCAGGGGCAGCTTGGCCCACCAGCTCAGGCACTGGGACCAATGGGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS GCA 90 bp GGCCTGACCTGGGTACTCCAGCTGCCACGTGACAGGGCGAGTGACTaGCACACCCCCACCAGTGCTGTTCTCCACTGCAAAGTCCACCCA +
Preference number: 5 (lower is better)
Translates to: GLTWVLQLPRDRASD*HTPTSAVLHCKVHP
Trigger: TGGGTGGACTTTGCAGTGGAGAACAGCACTGGTGGGGGTGTGGCAGTCACTCGCCCTGTCACGTGGCAGCTGGAGTACCCAGGTCAGGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CCA 90 bp CCAGTGAGAGGGGAATTGCAGTTCCACCACACAGGCACCCAGAGATaGCTGGAAGCGGCAGGCTCGGTGGGCAGTGCCTGCAGGGTGTGT +
Preference number: 5 (lower is better)
Translates to: PVRGELQFHHTGTQR*LEAAGSVGSACRVC
Trigger: ACACACCCTGCAGGCACTGCCCACCGAGCCTGCCGCTTCCAGCCATCTCTGGGTGCCTGTGTGGTGGAACTGCAATTCCCCTCTCACTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS TCA 90 bp GACAGTTCAAGGGGGCTGGAATCTGGCCCTGCAGGCCCAGCACGGTaGCAGGTGATCAGGCTGGTGTGGTGCTTTGAGCCCTTGAAGCGG +
Preference number: 5 (lower is better)
Translates to: DSSRGLESGPAGPAR*QVIRLVWCFEPLKR
Trigger: CCGCTTCAAGGGCTCAAAGCACCACACCAGCCTGATCACCTGTCACCGTGCTGGGCCTGCAGGGCCAGATTCCAGCCCCCTTGAACTGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS GCA 90 bp CAGGCTCCCGTCCCACTAGGATGCGGCCACCTTCCAAGGAGGCTATaGGAGGATCTTGCACATGGGCATGGGCTGCCACGAGGTGACTCA +
Preference number: 5 (lower is better)
Translates to: QAPVPLGCGHLPRRL*EDLAHGHGLPRGDS
Trigger: TGAGTCACCTCGTGGCAGCCCATGCCCATGTGCAAGATCCTCGCATAGCCTCCTTGGAAGGTGGCCGCATCCTAGTGGGACGGGAGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CCA 90 bp GGCCCTCGCCTGCAGGCTCCAGCGTGTAGGCCAGTTCGGCCCTTGTaGTGGCACTTTGGGAGAACCAGTGAGAGGGGAATTGCAGTTCCA +
Preference number: 5 (lower is better)
Translates to: GPRLQAPACRPVRPL*WHFGRTSERGIAVP
Trigger: TGGAACTGCAATTCCCCTCTCACTGGTTCTCCCAAAGTGCCACCACAAGGGCCGAACTGGCCTACACGCTGGAGCCTGCAGGCGAGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
ENSMUST00000238070.2
CDS TCA 90 bp ACCAGGATCTCCCACACCATTTTGTCCTTCTCTGCTTCGGGGGCCTaGCCTGGGTACTCCAGCTGCCACGTGACAGGGCGAGTGACTGCC +
Preference number: 5 (lower is better)
Translates to: TRISHTILSFSASGA*PGYSSCHVTGRVTA
Trigger: GGCAGTCACTCGCCCTGTCACGTGGCAGCTGGAGTACCCAGGTCAGGCCCCCGAAGCAGAGAAGGACAAAATGGTGTGGGAGATCCTGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS GCA 90 bp GACAGGGCGAGTGACTGCCACACCCCCACCAGTGCTGTTCTCCACTaGAAAGTCCACCCACAGGAACTCGGACAGTTCAAGGGGGCTGGA +
Preference number: 5 (lower is better)
Translates to: DRASDCHTPTSAVLH*KVHPQELGQFKGAG
Trigger: TCCAGCCCCCTTGAACTGTCCGAGTTCCTGTGGGTGGACTTTGCAGTGGAGAACAGCACTGGTGGGGGTGTGGCAGTCACTCGCCCTGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS GCA 90 bp GTCCCGCTCAGACACCAGGATCTCCCACACCATTTTGTCCTTCTCTaGTTCGGGGGCCTGACCTGGGTACTCCAGCTGCCACGTGACAGG +
Preference number: 5 (lower is better)
Translates to: VPLRHQDLPHHFVLL*FGGLTWVLQLPRDR
Trigger: CCTGTCACGTGGCAGCTGGAGTACCCAGGTCAGGCCCCCGAAGCAGAGAAGGACAAAATGGTGTGGGAGATCCTGGTGTCTGAGCGGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CCA 90 bp CCTCGCCTGCAGGCTCCAGCGTGTAGGCCAGTTCGGCCCTTGTGGTaGCACTTTGGGAGAACCAGTGAGAGGGGAATTGCAGTTCCACCA +
Preference number: 5 (lower is better)
Translates to: PRLQAPACRPVRPLW*HFGRTSERGIAVPP
Trigger: TGGTGGAACTGCAATTCCCCTCTCACTGGTTCTCCCAAAGTGCCACCACAAGGGCCGAACTGGCCTACACGCTGGAGCCTGCAGGCGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
ENSMUST00000238070.2
CDS CCA 90 bp TGCACGCAAAGTGACTGCTTCATCCAGAGGTACCTCCTGGTACTGTaGGGGGTCCTCAGGGTGCAGCTCCACACCACCCACTGGGAGAGC +
Preference number: 5 (lower is better)
Translates to: CTQSDCFIQRYLLVL*GVLRVQLHTTHWES
Trigger: GCTCTCCCAGTGGGTGGTGTGGAGCTGCACCCTGAGGACCCCCCACAGTACCAGGAGGTACCTCTGGATGAAGCAGTCACTTTGCGTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CCA 90 bp GATCTCCCACACCATTTTGTCCTTCTCTGCTTCGGGGGCCTGACCTaGGTACTCCAGCTGCCACGTGACAGGGCGAGTGACTGCCACACC +
Preference number: 5 (lower is better)
Translates to: DLPHHFVLLCFGGLT*VLQLPRDRASDCHT
Trigger: GGTGTGGCAGTCACTCGCCCTGTCACGTGGCAGCTGGAGTACCCAGGTCAGGCCCCCGAAGCAGAGAAGGACAAAATGGTGTGGGAGATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS GCA 90 bp CCAATCCTGCCCTTTGAGGTGGAAGAGGACACGGGCATAGGGTTCTaGTGGAGTCACCGCTGCTTCCACGGAAACAGCCCGCACATCCCA +
Preference number: 5 (lower is better)
Translates to: PILPFEVEEDTGIGF*WSHRCFHGNSPHIP
Trigger: TGGGATGTGCGGGCTGTTTCCGTGGAAGCAGCGGTGACTCCAGCAGAACCCTATGCCCGTGTCCTCTTCCACCTCAAAGGGCAGGATTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CCA 90 bp ATCCTGCCCTTTGAGGTGGAAGAGGACACGGGCATAGGGTTCTGCTaGAGTCACCGCTGCTTCCACGGAAACAGCCCGCACATCCCAAGG +
Preference number: 5 (lower is better)
Translates to: ILPFEVEEDTGIGFC*SHRCFHGNSPHIPR
Trigger: CCTTGGGATGTGCGGGCTGTTTCCGTGGAAGCAGCGGTGACTCCAGCAGAACCCTATGCCCGTGTCCTCTTCCACCTCAAAGGGCAGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CCA 90 bp CTTCTGCTGAGCCTGGGACCCTCCAGCCTCGGATTTGTTCCAGAGTaGTGTCAGTCAGCTCAATGCGCAAGGGCAGGAGTGGGGCCCATA +
Preference number: 5 (lower is better)
Translates to: LLLSLGPSSLGFVPE*CQSAQCARAGVGPI
Trigger: TATGGGCCCCACTCCTGCCCTTGCGCATTGAGCTGACTGACACCACTCTGGAACAAATCCGAGGCTGGAGGGTCCCAGGCTCAGCAGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CAA 90 bp CGAGGGGACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGACCAGCTCCTCAGCCTaGGCCAGAGGGATGAGGGCT +
Preference number: 5 (lower is better)
Translates to: RGDPAGDSDQQAPEDENETSSSA*ARGMRA
Trigger: AGCCCTCATCCCTCTGGCCAAGGCTGAGGAGCTGGT...CTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGTCCCCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CAA 90 bp AATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGGGGCCAGTGAGAGGGGAATaGCAGTTCCACCACACAGGC +
Preference number: 5 (lower is better)
Translates to: NKGHAPSLLTIVHDKGWGPVRGE*QFHHTG
Trigger: GCCTGTGTGGTGGAACTGCAATTCCCCTCTCACTGG...CCCCCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CAA 90 bp ATAAATAAGGGGCATGCGCCCTCCCTCTTGACCATAGTCCATGACAAGGGGTGGCCTCAGGCGGCTGGGTaGGGGGTGCTGGTGCAAATG +
Preference number: 5 (lower is better)
Translates to: INKGHAPSLLTIVHDKGWPQAAG*GVLVQM
Trigger: CATTTGCACCAGCACCCCCAACCCAGCCGCCTGAGG...CCACCCCTTGTCATGGACTATGGTCAAGAGGGAGGGCGCATGCCCCTTATTTAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS GCA 90 bp CCCTCCAGCCTCGGATTTGTTCCAGAGTGGTGTCAGTCAGCTCAATaGGCAAGGGCAGGAGTGGGGCCCATACAGTCAGCTTTAGTGAGG +
Preference number: 5 (lower is better)
Translates to: PSSLGFVPEWCQSAQ*ARAGVGPIQSALVR
Trigger: CCTCACTAAAGCTGACTGTATGGGCCCCACTCCTGCCCTTGCGCATTGAGCTGACTGACACCACTCTGGAACAAATCCGAGGCTGGAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CCA 90 bp TTTGAGCCCTTGAAGCGGTCTAACTTAGCAGTCCAGAGGGTGGGCTaGGCTGGGCGGGCAGCTATCACCTGCAGCCCTTTCTTCACCTTA +
Preference number: 5 (lower is better)
Translates to: FEPLKRSNLAVQRVG*AGRAAITCSPFFTL
Trigger: TAAGGTGAAGAAAGGGCTGCAGGTGATAGCTGCCCGCCCAGCCCAGCCCACCCTCTGGACTGCTAAGTTAGACCGCTTCAAGGGCTCAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CAA 90 bp CGAGGGGACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGCCTTGTGGTGGCACTTaGGGAGAACCAGTGAGAGGG +
Preference number: 5 (lower is better)
Translates to: RGDPAGDSDQQAPEDENEPCGGT*GEPVRG
Trigger: CCCTCTCACTGGTTCTCCCAAAGTGCCACCACAAGG...CTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGTCCCCTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CAA 90 bp CAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGGGCCACCTCCTGCTTaGGGGCTGGAAGAGCTGACT +
Preference number: 5 (lower is better)
Translates to: QQGTQINKHQRMRMRVRQGPPPA*GLEELT
Trigger: AGTCAGCTCTTCCAGCCCCAAAGCAGGAGGTGGCCC...TTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025645.14
CDS GCA 90 bp AAGGGTGGCAGTGAAGAGCTGGCCAGGCCTCATTGGCACATCAGGTaGACGCAAAGTGACTGCTTCATCCAGAGGTACCTCCTGGTACTG +
Preference number: 5 (lower is better)
Translates to: KGGSEELARPHWHIR*TQSDCFIQRYLLVL
Trigger: CAGTACCAGGAGGTACCTCTGGATGAAGCAGTCACTTTGCGTGCACCTGATGTGCCAATGAGGCCTGGCCAGCTCTTCACTGCCACCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS GCA 90 bp TCAGATACCTGCAGGACCTGTGTATTGGCTGACTCACAGCCAATGTaGTCTGTCACCTCCTCCAAGGCTCCCCCACTGTCCACAGTGACG +
Preference number: 5 (lower is better)
Translates to: SDTCRTCVLADSQPM*SVTSSKAPPLSTVT
Trigger: CGTCACTGTGGACAGTGGGGGAGCCTTGGAGGAGGTGACAGAGCACATTGGCTGTGAGTCAGCCAATACACAGGTCCTGCAGGTATCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CAA 90 bp GGATCCTCTCCATGTAGTTTCGAAGCTCCTCTGGGTCCTTCAGCCCCATGTCCTCCAGTGAGAGGGGAATaGCAGTTCCACCACACAGGC +
Preference number: 5 (lower is better)
Translates to: GSSPCSFEAPLGPSAPCPPVRGE*QFHHTG
Trigger: GCCTGTGTGGTGGAACTGCAATTCCCCTCTCACTGG...AGGACATGGGGCTGAAGGACCCAGAGGAGCTTCGAAACTACATGGAGAGGATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CAA 90 bp GGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATGCTGGCCAGGCCTCATaGGCACATCAGGTGCACGCA +
Preference number: 5 (lower is better)
Translates to: GTQINKHQRMRMRVRQDDAGQAS*AHQVHA
Trigger: TGCGTGCACCTGATGTGCCAATGAGGCCTGGCCAGC...ATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CAA 90 bp GTAGTCCTTATTTGGAAAACCCCAGAGCAAGCGGTCCACATACCAGGGCCCACTCGGCCATCACCTGCTTaGGGGCTGGAAGAGCTGACT +
Preference number: 5 (lower is better)
Translates to: VVLIWKTPEQAVHIPGPTRPSPA*GLEELT
Trigger: AGTCAGCTCTTCCAGCCCCAAAGCAGGTGATGGCCG...AGTGGGCCCTGGTATGTGGACCGCTTGCTCTGGGGTTTTCCAAATAAGGACTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CAA 90 bp GGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATAGGCCAGTTCGGCCCTaGTGGTGGCACTTTGGGAGA +
Preference number: 5 (lower is better)
Translates to: GTQINKHQRMRMRVRQDDRPVRP*WWHFGR
Trigger: TCTCCCAAAGTGCCACCACAAGGGCCGAACTGGCCT...ATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CAA 90 bp ACCCAGCAGGGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGTCCAGCACTGAGACCTaGTCGTCTGTCACAGCCAGT +
Preference number: 5 (lower is better)
Translates to: TQQGTQINKHQRMRMRVRSSTET*SSVTAS
Trigger: ACTGGCTGTGACAGACGACAAGGTCTCAGTGCTGGA...CCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCCCTGCTGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CAA 90 bp GGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATCCTTGTGGTGGCACTTaGGGAGAACCAGTGAGAGGG +
Preference number: 5 (lower is better)
Translates to: GTQINKHQRMRMRVRQDDPCGGT*GEPVRG
Trigger: CCCTCTCACTGGTTCTCCCAAAGTGCCACCACAAGG...ATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CAA 90 bp GCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTAGCCAGCGATCCCATTTGCAGGACCTGTGTATaGGCTGACTCACAGCCAATG +
Preference number: 5 (lower is better)
Translates to: APEDENEGQARRLASDPICRTCV*ADSQPM
Trigger: CATTGGCTGTGAGTCAGCCAATACACAGGTCCTGCA...AATGGGATCGCTGGCTAATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS-3UTR CAA 90 bp GTAGTCCTTATTTGGAAAACCCCAGAGCAAGCGGTCCACATACCAGGGCCCACTTGCAGGACCTGTGTATaGGCTGACTCACAGCCAATG +
Preference number: 5 (lower is better)
Translates to: VVLIWKTPEQAVHIPGPTCRTCV*ADSQPM
Trigger: CATTGGCTGTGAGTCAGCCAATACACAGGTCCTGCA...AGTGGGCCCTGGTATGTGGACCGCTTGCTCTGGGGTTTTCCAAATAAGGACTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120524.2
CDS-3UTR CAA 90 bp GGGACTCAGATCAACAAGCACCAGAGGATGAGAATGAGGGTCAGGCAAGACGATTCCAGCACTGAGACCTaGTCGTCTGTCACAGCCAGT +
Preference number: 5 (lower is better)
Translates to: GTQINKHQRMRMRVRQDDSSTET*SSVTAS
Trigger: ACTGGCTGTGACAGACGACAAGGTCTCAGTGCTGGA...ATCGTCTTGCCTGACCCTCATTCTCATCCTCTGGTGCTTGTTGATCTGAGTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CCA 72 bp GCCGCAAAGGGCACCAAGAAGCGCACACCAGCTCTCTaGTACTGCAGGCGGCAGCCACGGGAGCGCCGCTCC +
Preference number: 6 (lower is better)
Translates to: AAKGTKKRTPAL*YCRRQPRERRS
Trigger: GGAGCGGCGCTCCCGTGGCTGCCGCCTGCAGTACCAGAGAGCTGGTGTGCGCTTCTTGGTGCCCTTTGCGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS TCA 72 bp CCCGGAGAAGCGGCTGTGCCCTGGGCCAGGGCTGCATaGGCAGGAAAGTCTCAGAGCGGGAGGCCAGGGAAG +
Preference number: 6 (lower is better)
Translates to: PGEAAVPWARAA*AGKSQSGRPGK
Trigger: CTTCCCTGGCCTCCCGCTCTGAGACTTTCCTGCTCATGCAGCCCTGGCCCAGGGCACAGCCGCTTCTCCGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
ENSMUST00000238070.2
CDS GCA 72 bp AAGGGCACCAAGAAGCGCACACCAGCTCTCTGGTACTaGAGGCGGCAGCCACGGGAGCGCCGCTCCACCTCC +
Preference number: 6 (lower is better)
Translates to: KGTKKRTPALWY*RRQPRERRSTS
Trigger: GGAGGTGGAGCGGCGCTCCCGTGGCTGCCGCCTGCAGTACCAGAGAGCTGGTGTGCGCTTCTTGGTGCCCTT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS TCA 72 bp AGTAGGTGGGTGAGGCGACGGCCACCGTCCAGCGGGTaGGCCGCAAAGGGCACCAAGAAGCGCACACCAGCT +
Preference number: 6 (lower is better)
Translates to: SRWVRRRPPSSG*AAKGTKKRTPA
Trigger: AGCTGGTGTGCGCTTCTTGGTGCCCTTTGCGGCTCACCCGCTGGACGGTGGCCGTCGCCTCACCCACCTACT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CCA 72 bp CAGGCACCCAGAGATGGCTGGAAGCGGCAGGCTCGGTaGGCAGTGCCTGCAGGGTGTGTGGCATGTAGTCGG +
Preference number: 6 (lower is better)
Translates to: QAPRDGWKRQAR*AVPAGCVACSR
Trigger: CCGACTACATGCCACACACCCTGCAGGCACTGCCCACCGAGCCTGCCGCTTCCAGCCATCTCTGGGTGCCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS TCA 72 bp AGGGGGCTGGAATCTGGCCCTGCAGGCCCAGCACGGTaGCAGGTGATCAGGCTGGTGTGGTGCTTTGAGCCC +
Preference number: 6 (lower is better)
Translates to: RGLESGPAGPAR*QVIRLVWCFEP
Trigger: GGGCTCAAAGCACCACACCAGCCTGATCACCTGTCACCGTGCTGGGCCTGCAGGGCCAGATTCCAGCCCCCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS TCA 72 bp TCACATCCAGCAACCAGTCAGGACCGAGTAGGTGGGTaGGGCGACGGCCACCGTCCAGCGGGTGAGCCGCAA +
Preference number: 6 (lower is better)
Translates to: SHPATSQDRVGG*GDGHRPAGEPQ
Trigger: TTGCGGCTCACCCGCTGGACGGTGGCCGTCGCCTCACCCACCTACTCGGTCCTGACTGGTTGCTGGATGTGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CCA 72 bp AATTGCAGTTCCACCACACAGGCACCCAGAGATGGCTaGAAGCGGCAGGCTCGGTGGGCAGTGCCTGCAGGG +
Preference number: 6 (lower is better)
Translates to: NCSSTTQAPRDG*KRQARWAVPAG
Trigger: CCCTGCAGGCACTGCCCACCGAGCCTGCCGCTTCCAGCCATCTCTGGGTGCCTGTGTGGTGGAACTGCAATT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CCA 72 bp GAGCCGCACCGGAATACGCTGGGGCACTCCAGTCAATaGAGCCGTGTTCACCAGCTCCTCAGCCTTGGCCAG +
Preference number: 6 (lower is better)
Translates to: EPHRNTLGHSSQ*SRVHQLLSLGQ
Trigger: CTGGCCAAGGCTGAGGAGCTGGTGAACACGGCTCCATTGACTGGAGTGCCCCAGCGTATTCCGGTGCGGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CAA 72 bp CGCCTGCAGGCTCCAGCGTGTAGGCCAGTTCGGCCCTaGTGGTGGCACTTTGGGAGAACCAGTGAGAGGGGA +
Preference number: 6 (lower is better)
Translates to: RLQAPACRPVRP*WWHFGRTSERG
Trigger: TCCCCTCTCACTGGTTCTCCCAAAGTGCCACCACAAGGGCCGAACTGGCCTACACGCTGGAGCCTGCAGGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
ENSMUST00000238070.2
CDS CAA 90 bp CAGGGCCCTCGCCTGCAGGCTCCAGCGTGTAGGCCAGTTCGGCCCTaGTGGTGGCACTTTGGGAGAACCAGTGAGAGGGGAATTGCAGTT +
Preference number: 6 (lower is better)
Translates to: QGPRLQAPACRPVRP*WWHFGRTSERGIAV
Trigger: AACTGCAATTCCCCTCTCACTGGTTCTCCCAAAGTGCCACCACAAGGGCCGAACTGGCCTACACGCTGGAGCCTGCAGGCGAGGGCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
ENSMUST00000238070.2
CDS GCA 72 bp CAGGGTGGGACATGCCCCGGCTCAAGGACAGTGAGATaGCCATCACCGGCTGTACTCGCAGATCCAGCACTG +
Preference number: 6 (lower is better)
Translates to: QGGTCPGSRTVR*PSPAVLADPAL
Trigger: CAGTGCTGGATCTGCGAGTACAGCCGGTGATGGGCATCTCACTGTCCTTGAGCCGGGGCATGTCCCACCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CAA 90 bp GAGATGCCCATCACCGGCTGTACTCGCAGATCCAGCACTGAGACCTaGTCGTCTGTCACAGCCAGTGCCTGCTCCCCCAGGATGGCGTCA +
Preference number: 6 (lower is better)
Translates to: EMPITGCTRRSSTET*SSVTASACSPRMAS
Trigger: TGACGCCATCCTGGGGGAGCAGGCACTGGCTGTGACAGACGACAAGGTCTCAGTGCTGGATCTGCGAGTACAGCCGGTGATGGGCATCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS TCA 72 bp TTCTCCAGGGTGGGACATGCCCCGGCTCAAGGACAGTaGGATGCCCATCACCGGCTGTACTCGCAGATCCAG +
Preference number: 6 (lower is better)
Translates to: FSRVGHAPAQGQ*DAHHRLYSQIQ
Trigger: CTGGATCTGCGAGTACAGCCGGTGATGGGCATCTCACTGTCCTTGAGCCGGGGCATGTCCCACCCTGGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS GCA 72 bp CCCTTTGAGGTGGAAGAGGACACGGGCATAGGGTTCTaGTGGAGTCACCGCTGCTTCCACGGAAACAGCCCG +
Preference number: 6 (lower is better)
Translates to: PFEVEEDTGIGF*WSHRCFHGNSP
Trigger: CGGGCTGTTTCCGTGGAAGCAGCGGTGACTCCAGCAGAACCCTATGCCCGTGTCCTCTTCCACCTCAAAGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS GCA 72 bp TGGGTACTCCAGCTGCCACGTGACAGGGCGAGTGACTaGCACACCCCCACCAGTGCTGTTCTCCACTGCAAA +
Preference number: 6 (lower is better)
Translates to: WVLQLPRDRASD*HTPTSAVLHCK
Trigger: TTTGCAGTGGAGAACAGCACTGGTGGGGGTGTGGCAGTCACTCGCCCTGTCACGTGGCAGCTGGAGTACCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CCA 72 bp TTGAAGCGGTCTAACTTAGCAGTCCAGAGGGTGGGCTaGGCTGGGCGGGCAGCTATCACCTGCAGCCCTTTC +
Preference number: 6 (lower is better)
Translates to: LKRSNLAVQRVG*AGRAAITCSPF
Trigger: GAAAGGGCTGCAGGTGATAGCTGCCCGCCCAGCCCAGCCCACCCTCTGGACTGCTAAGTTAGACCGCTTCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CAA 72 bp GATGCGGCCACCTTCCAAGGAGGCTATGCGAGGATCTaGCACATGGGCATGGGCTGCCACGAGGTGACTCAC +
Preference number: 6 (lower is better)
Translates to: DAATFQGGYARI*HMGMGCHEVTH
Trigger: GTGAGTCACCTCGTGGCAGCCCATGCCCATGTGCAAGATCCTCGCATAGCCTCCTTGGAAGGTGGCCGCATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS TCA 72 bp CGAGGATCTTGCACATGGGCATGGGCTGCCACGAGGTaGCTCACATCCAGCAACCAGTCAGGACCGAGTAGG +
Preference number: 6 (lower is better)
Translates to: RGSCTWAWAATR*LTSSNQSGPSR
Trigger: CCTACTCGGTCCTGACTGGTTGCTGGATGTGAGTCACCTCGTGGCAGCCCATGCCCATGTGCAAGATCCTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS TCA 72 bp GATGCCCATCACCGGCTGTACTCGCAGATCCAGCACTaGGACCTTGTCGTCTGTCACAGCCAGTGCCTGCTC +
Preference number: 6 (lower is better)
Translates to: DAHHRLYSQIQH*DLVVCHSQCLL
Trigger: GAGCAGGCACTGGCTGTGACAGACGACAAGGTCTCAGTGCTGGATCTGCGAGTACAGCCGGTGATGGGCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS GCA 72 bp GGAGGCTATGCGAGGATCTTGCACATGGGCATGGGCTaGCACGAGGTGACTCACATCCAGCAACCAGTCAGG +
Preference number: 6 (lower is better)
Translates to: GGYARILHMGMG*HEVTHIQQPVR
Trigger: CCTGACTGGTTGCTGGATGTGAGTCACCTCGTGGCAGCCCATGCCCATGTGCAAGATCCTCGCATAGCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CCA 72 bp TTTGAGGTGGAAGAGGACACGGGCATAGGGTTCTGCTaGAGTCACCGCTGCTTCCACGGAAACAGCCCGCAC +
Preference number: 6 (lower is better)
Translates to: FEVEEDTGIGFC*SHRCFHGNSPH
Trigger: GTGCGGGCTGTTTCCGTGGAAGCAGCGGTGACTCCAGCAGAACCCTATGCCCGTGTCCTCTTCCACCTCAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CCA 72 bp CAGGCTCCAGCGTGTAGGCCAGTTCGGCCCTTGTGGTaGCACTTTGGGAGAACCAGTGAGAGGGGAATTGCA +
Preference number: 6 (lower is better)
Translates to: QAPACRPVRPLW*HFGRTSERGIA
Trigger: TGCAATTCCCCTCTCACTGGTTCTCCCAAAGTGCCACCACAAGGGCCGAACTGGCCTACACGCTGGAGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
ENSMUST00000238070.2
CDS CCA 72 bp CTGCAGGCTCCAGCGTGTAGGCCAGTTCGGCCCTTGTaGTGGCACTTTGGGAGAACCAGTGAGAGGGGAATT +
Preference number: 6 (lower is better)
Translates to: LQAPACRPVRPL*WHFGRTSERGI
Trigger: AATTCCCCTCTCACTGGTTCTCCCAAAGTGCCACCACAAGGGCCGAACTGGCCTACACGCTGGAGCCTGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
ENSMUST00000238070.2
CDS CCA 72 bp AGCCTGGGACCCTCCAGCCTCGGATTTGTTCCAGAGTaGTGTCAGTCAGCTCAATGCGCAAGGGCAGGAGTG +
Preference number: 6 (lower is better)
Translates to: SLGPSSLGFVPE*CQSAQCARAGV
Trigger: CACTCCTGCCCTTGCGCATTGAGCTGACTGACACCACTCTGGAACAAATCCGAGGCTGGAGGGTCCCAGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CAA 90 bp TTCGGCCCTTGTGGTGGCACTTTGGGAGAACCAGTGAGAGGGGAATaGCAGTTCCACCACACAGGCACCCAGAGATGGCTGGAAGCGGCA +
Preference number: 6 (lower is better)
Translates to: FGPCGGTLGEPVRGE*QFHHTGTQRWLEAA
Trigger: TGCCGCTTCCAGCCATCTCTGGGTGCCTGTGTGGTGGAACTGCAATTCCCCTCTCACTGGTTCTCCCAAAGTGCCACCACAAGGGCCGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CAA 90 bp TTCGGCCCTTGTGGTGGCACTTTGGGAGAACCAGTGAGAGGGGAATaGCAGTTCCACCACACAGGCACCCAGAGATGGCTGCTGAGTGGC +
Preference number: 6 (lower is better)
Translates to: FGPCGGTLGEPVRGE*QFHHTGTQRWLLSG
Trigger: GCCACTCAGCAGCCATCTCTGGGTGCCTGTGTGGTGGAACTGCAATTCCCCTCTCACTGGTTCTCCCAAAGTGCCACCACAAGGGCCGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238070.2
CDS TCA 72 bp AGTTCGGCCCTTGTGGTGGCACTTTGGGAGAACCAGTaGGAGGGGAATTGCAGTTCCACCACACAGGCACCC +
Preference number: 6 (lower is better)
Translates to: SSALVVALWENQ*EGNCSSTTQAP
Trigger: GGGTGCCTGTGTGGTGGAACTGCAATTCCCCTCTCACTGGTTCTCCCAAAGTGCCACCACAAGGGCCGAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
ENSMUST00000238070.2
CDS GCA 72 bp AGACACCAGGATCTCCCACACCATTTTGTCCTTCTCTaGTTCGGGGGCCTGACCTGGGTACTCCAGCTGCCA +
Preference number: 6 (lower is better)
Translates to: RHQDLPHHFVLL*FGGLTWVLQLP
Trigger: TGGCAGCTGGAGTACCCAGGTCAGGCCCCCGAAGCAGAGAAGGACAAAATGGTGTGGGAGATCCTGGTGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS GCA 72 bp TGCAGGACCTGTGTATTGGCTGACTCACAGCCAATGTaGTCTGTCACCTCCTCCAAGGCTCCCCCACTGTCC +
Preference number: 6 (lower is better)
Translates to: CRTCVLADSQPM*SVTSSKAPPLS
Trigger: GGACAGTGGGGGAGCCTTGGAGGAGGTGACAGAGCACATTGGCTGTGAGTCAGCCAATACACAGGTCCTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS GCA 72 bp AGTGACTGCCACACCCCCACCAGTGCTGTTCTCCACTaGAAAGTCCACCCACAGGAACTCGGACAGTTCAAG +
Preference number: 6 (lower is better)
Translates to: SDCHTPTSAVLH*KVHPQELGQFK
Trigger: CTTGAACTGTCCGAGTTCCTGTGGGTGGACTTTGCAGTGGAGAACAGCACTGGTGGGGGTGTGGCAGTCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CAA 72 bp TGTGGTGGCACTTTGGGAGAACCAGTGAGAGGGGAATaGCAGTTCCACCACACAGGCACCCAGAGATGGCTG +
Preference number: 6 (lower is better)
Translates to: CGGTLGEPVRGE*QFHHTGTQRWL
Trigger: CAGCCATCTCTGGGTGCCTGTGTGGTGGAACTGCAATTCCCCTCTCACTGGTTCTCCCAAAGTGCCACCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
ENSMUST00000238070.2
CDS GCA 72 bp AGTGAAGAGCTGGCCAGGCCTCATTGGCACATCAGGTaGACGCAAAGTGACTGCTTCATCCAGAGGTACCTC +
Preference number: 6 (lower is better)
Translates to: SEELARPHWHIR*TQSDCFIQRYL
Trigger: GAGGTACCTCTGGATGAAGCAGTCACTTTGCGTGCACCTGATGTGCCAATGAGGCCTGGCCAGCTCTTCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CAA 90 bp CCTTTCTTCACCTTAATCCGCAGAGTAAGAAGGCTCGCAGTGAAGTaGTGTCGAAGCAGAAGGGTGGCAGTGAAGAGCTGGCCAGGCCTC +
Preference number: 6 (lower is better)
Translates to: PFFTLIRRVRRLAVK*CRSRRVAVKSWPGL
Trigger: GAGGCCTGGCCAGCTCTTCACTGCCACCCTTCTGCTTCGACACAACTTCACTGCGAGCCTTCTTACTCTGCGGATTAAGGTGAAGAAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2
CDS CAA 72 bp ACCTTAATCCGCAGAGTAAGAAGGCTCGCAGTGAAGTaGTGTCGAAGCAGAAGGGTGGCAGTGAAGAGCTGG +
Preference number: 6 (lower is better)
Translates to: TLIRRVRRLAVK*CRSRRVAVKSW
Trigger: CCAGCTCTTCACTGCCACCCTTCTGCTTCGACACAACTTCACTGCGAGCCTTCTTACTCTGCGGATTAAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025645.14
ENSMUST00000120524.2