Pregenerated sensors for TMEM106C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052369Ensembl transcript IDs: ENSMUST00000064200.9, ENSMUST00000229428.2, ENSMUST00000229433.2, ENSMUST00000230072.2, ENSMUST00000231144.2
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGTGGTTTCGTTGGAAGGGGCGGCTTTCCCCTAAGTGTGGGAGGATaGTTTCTGCGGGTTTCTTCTTCCTCCTCTACTTATACCATGTGG | + |
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Preference number: 1 (lower is better) Translates to: SGFVGRGGFPLSVGG*FLRVSSSSSTYTMW Trigger: CCACATGGTATAAGTAGAGGAGGAAGAAGAAACCCGCAGAAAGCATCCTCCCACACTTAGGGGAAAGCCGCCCCTTCCAACGAAACCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR CCA 90 bp | AGCTGCACTAGCAACCTACCTTCATGTTACTCTGGTCTGAAAACCTaGAACCCTGGTTCATCTCAACTTATAATGACTCAAGAGCAGCCA | + |
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Preference number: 1 (lower is better) Translates to: SCTSNLPSCYSGLKT*NPGSSQLIMTQEQP Trigger: TGGCTGCTCTTGAGTCATTATAAGTTGAGATGAACCAGGGTTCCAGGTTTTCAGACCAGAGTAACATGAAGGTAGGTTGCTAGTGCAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR-3UTR GCA 90 bp | GGGTGGGGTGAGGCGGGAGGGGGAGGTATTAGGGAACAGATGCAGAGGCAGCCGCCATACGTCTGCAGCTaGACTAGCAACCTACCTTCA | + |
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Preference number: 2 (lower is better) Translates to: GWGEAGGGGIREQMQRQPPYVCS*TSNLPS Trigger: TGAAGGTAGGTTGCTAGTGCAGCTGCAGACGTATGG...CGGCTGCCTCTGCATCTGTTCCCTAATACCTCCCCCTCCCGCCTCACCCCACCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR-3UTR GCA 90 bp | ACGGGTGGGTGTCCTGGACACCACACCCATACGTCTGCAGCTGCACTAGCAACCTGGGAGGATGCTTTCTaGGGGTTTCTTCTTCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: TGGCPGHHTHTSAAALATWEDAF*GFLLPP Trigger: AGGAGGAAGAAGAAACCCGCAGAAAGCATCCTCCCA...GGTTGCTAGTGCAGCTGCAGACGTATGGGTGTGGTGTCCAGGACACCCACCCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR-3UTR CCA 90 bp | GGTGAGGCGGGAGGGGGAGGTATTAGGGAACAGATGCAGAGGCAGCCGCTGAGGACCTTCATGTTACTCTaGTCTGAAAACCTGGAACCC | + |
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Preference number: 2 (lower is better) Translates to: GEAGGGGIREQMQRQPLRTFMLL*SENLEP Trigger: GGGTTCCAGGTTTTCAGACCAGAGTAACATGAAGGT...CCTCAGCGGCTGCCTCTGCATCTGTTCCCTAATACCTCCCCCTCCCGCCTCACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR-3UTR TCA 90 bp | ACGGGTGGGTGTCCTGGACACCACACCCATACGTCTGCAGCTGCACTAGCAACCCATGTTACTCTGGTCTaGAAACCTGGAACCCTGGTT | + |
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Preference number: 2 (lower is better) Translates to: TGGCPGHHTHTSAAALATHVTLV*KPGTLV Trigger: AACCAGGGTTCCAGGTTTTCAGACCAGAGTAACATG...GGTTGCTAGTGCAGCTGCAGACGTATGGGTGTGGTGTCCAGGACACCCACCCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR-3UTR GCA 90 bp | GGTGGGTGTCCTGGACACCACACCCATACGTCTGCAGCTGCACTAGCAACCTACTGGGAGGATGCTTTCTaGGGGTTTCTTCTTCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: GGCPGHHTHTSAAALATYWEDAF*GFLLPP Trigger: AGGAGGAAGAAGAAACCCGCAGAAAGCATCCTCCCA...GTAGGTTGCTAGTGCAGCTGCAGACGTATGGGTGTGGTGTCCAGGACACCCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR-3UTR CCA 90 bp | AGGGAACAGATGCAGAGGCAGCCGCTGAGGGCTCCTCACGGGTGGGTGTCCTGGGAAAACCTGGAACCCTaGTTCATCTCAACTTATAAT | + |
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Preference number: 2 (lower is better) Translates to: REQMQRQPLRAPHGWVSWENLEP*FISTYN Trigger: ATTATAAGTTGAGATGAACCAGGGTTCCAGGTTTTC...CCAGGACACCCACCCGTGAGGAGCCCTCAGCGGCTGCCTCTGCATCTGTTCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR-3UTR GCA 90 bp | TATTTTTCTATCAAATTCCCAATCTATATCCAGCCAGTGGATCAAAGGTCCGTCCTAAGTGTGGGAGGATaGTTTCTGCGGGTTTCTTCT | + |
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Preference number: 2 (lower is better) Translates to: YFSIKFPIYIQPVDQRSVLSVGG*FLRVSS Trigger: AGAAGAAACCCGCAGAAAGCATCCTCCCACACTTAG...GACGGACCTTTGATCCACTGGCTGGATATAGATTGGGAATTTGATAGAAAAATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR CCA 72 bp | CAGATGCAGAGGCAGCCGCTGAGGGCTCCTCACGGGTaGGTGTCCTGGACACCACACCCATACGTCTGCAGC | + |
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Preference number: 3 (lower is better) Translates to: QMQRQPLRAPHG*VSWTPHPYVCS Trigger: GCTGCAGACGTATGGGTGTGGTGTCCAGGACACCCACCCGTGAGGAGCCCTCAGCGGCTGCCTCTGCATCTG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR TCA 72 bp | GGGGAGGTATTAGGGAACAGATGCAGAGGCAGCCGCTaGGGGCTCCTCACGGGTGGGTGTCCTGGACACCAC | + |
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Preference number: 3 (lower is better) Translates to: GEVLGNRCRGSR*GLLTGGCPGHH Trigger: GTGGTGTCCAGGACACCCACCCGTGAGGAGCCCTCAGCGGCTGCCTCTGCATCTGTTCCCTAATACCTCCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR-3UTR CAA 90 bp | GGTGAGGCGGGAGGGGGAGGTATTAGGGAACAGATGCAGAGGCAGCCGCTGAGGTGGACAGTGGTTTCGTaGGAAGGGGCGGCTTTCCCC | + |
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Preference number: 3 (lower is better) Translates to: GEAGGGGIREQMQRQPLRWTVVS*EGAAFP Trigger: GGGGAAAGCCGCCCCTTCCAACGAAACCACTGTCCA...CCTCAGCGGCTGCCTCTGCATCTGTTCCCTAATACCTCCCCCTCCCGCCTCACC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR CCA 72 bp | GCTAGGCACAGACTAGGCACTGGACAGTGGTTTCGTTaGAAGGGGCGGCTTTCCCCTAAGTGTGGGAGGATG | + |
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Preference number: 3 (lower is better) Translates to: ARHRLGTGQWFR*KGRLSPKCGRM Trigger: CATCCTCCCACACTTAGGGGAAAGCCGCCCCTTCCAACGAAACCACTGTCCAGTGCCTAGTCTGTGCCTAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR GCA 72 bp | CACGGGTGGGTGTCCTGGACACCACACCCATACGTCTaGAGCTGCACTAGCAACCTACCTTCATGTTACTCT | + |
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Preference number: 3 (lower is better) Translates to: HGWVSWTPHPYV*SCTSNLPSCYS Trigger: AGAGTAACATGAAGGTAGGTTGCTAGTGCAGCTGCAGACGTATGGGTGTGGTGTCCAGGACACCCACCCGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR GCA 72 bp | GTTGGAAGGGGCGGCTTTCCCCTAAGTGTGGGAGGATaGTTTCTGCGGGTTTCTTCTTCCTCCTCTACTTAT | + |
|
Preference number: 3 (lower is better) Translates to: VGRGGFPLSVGG*FLRVSSSSSTY Trigger: ATAAGTAGAGGAGGAAGAAGAAACCCGCAGAAAGCATCCTCCCACACTTAGGGGAAAGCCGCCCCTTCCAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR-3UTR CAA 90 bp | TATTTTTCTATCAAATTCCCAATCTATATCCAGCCAGTGGATCAAAGGTCCGTCTGGACAGTGGTTTCGTaGGAAGGGGCGGCTTTCCCC | + |
|
Preference number: 3 (lower is better) Translates to: YFSIKFPIYIQPVDQRSVWTVVS*EGAAFP Trigger: GGGGAAAGCCGCCCCTTCCAACGAAACCACTGTCCA...GACGGACCTTTGATCCACTGGCTGGATATAGATTGGGAATTTGATAGAAAAATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR CCA 72 bp | ACCTTCATGTTACTCTGGTCTGAAAACCTGGAACCCTaGTTCATCTCAACTTATAATGACTCAAGAGCAGCC | + |
|
Preference number: 3 (lower is better) Translates to: TFMLLWSENLEP*FISTYNDSRAA Trigger: GGCTGCTCTTGAGTCATTATAAGTTGAGATGAACCAGGGTTCCAGGTTTTCAGACCAGAGTAACATGAAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR CCA 72 bp | ATTTTTCTATCAAATTCCCAATCTATATCCAGCCAGTaGATCAAAGGTCCGTCAAGCCCTTCGATAGACCCT | + |
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Preference number: 3 (lower is better) Translates to: IFLSNSQSISSQ*IKGPSSPSIDP Trigger: AGGGTCTATCGAAGGGCTTGACGGACCTTTGATCCACTGGCTGGATATAGATTGGGAATTTGATAGAAAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| 3UTR CCA 72 bp | AGCAACCTACCTTCATGTTACTCTGGTCTGAAAACCTaGAACCCTGGTTCATCTCAACTTATAATGACTCAA | + |
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Preference number: 3 (lower is better) Translates to: SNLPSCYSGLKT*NPGSSQLIMTQ Trigger: TTGAGTCATTATAAGTTGAGATGAACCAGGGTTCCAGGTTTTCAGACCAGAGTAACATGAAGGTAGGTTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR TCA 90 bp | ACAGATGCAGAGGCAGCCGCTGAGGGCTCCTCACGGGTGGGTGTCCTGGACACCGCGATGGCTTCCTCCTaGTCTCTATCAGCCAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: TDAEAAAEGSSRVGVLDTAMASS*SLSASK Trigger: CTTGCTGGCTGATAGAGATCAGGAGGAAGCCATCGC...GGTGTCCAGGACACCCACCCGTGAGGAGCCCTCAGCGGCTGCCTCTGCATCTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR TCA 90 bp | GGGTGGGGTGAGGCGGGAGGGGGAGGTATTAGGGAACAGATGCAGAGGCAGCCGTTCGCTGACAAAATGTaGGGGCAGAGGAGTGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: GWGEAGGGGIREQMQRQPFADKM*GQRSAE Trigger: CTCAGCACTCCTCTGCCCTCACATTTTGTCAGCGAA...CGGCTGCCTCTGCATCTGTTCCCTAATACCTCCCCCTCCCGCCTCACCCCACCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR GCA 90 bp | ACAGATGCAGAGGCAGCCGCTGAGGGCTCCTCACGGGTGGGTGTCCTGGACACCGCTGTGTCTCCAAGGTaGTCTGGGATATGTGGCCAA | + |
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Preference number: 4 (lower is better) Translates to: TDAEAAAEGSSRVGVLDTAVSPR*SGICGQ Trigger: TTGGCCACATATCCCAGAGCACCTTGGAGACACAGC...GGTGTCCAGGACACCCACCCGTGAGGAGCCCTCAGCGGCTGCCTCTGCATCTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR TCA 90 bp | GGTGGGTGTCCTGGACACCACACCCATACGTCTGCAGCTGCACTAGCAACCTACGCTCCTTGGCAGGTGTaGCAGGTGATGCTATTTCTC | + |
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Preference number: 4 (lower is better) Translates to: GGCPGHHTHTSAAALATYAPWQV*QVMLFL Trigger: GAGAAATAGCATCACCTGTCACACCTGCCAAGGAGC...GTAGGTTGCTAGTGCAGCTGCAGACGTATGGGTGTGGTGTCCAGGACACCCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR TCA 90 bp | ACGGGTGGGTGTCCTGGACACCACACCCATACGTCTGCAGCTGCACTAGCAACCTCATCCTTCTTTCGCTaGCAAAATGTGAGGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: TGGCPGHHTHTSAAALATSSFFR*QNVRAE Trigger: CTCTGCCCTCACATTTTGTCAGCGAAAGAAGGATGA...GGTTGCTAGTGCAGCTGCAGACGTATGGGTGTGGTGTCCAGGACACCCACCCGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR TCA 90 bp | GGGTGTCCTGGACACCACACCCATACGTCTGCAGCTGCACTAGCAACCTACCTTGCTCCTTGGCAGGTGTaGCAGGTGATGCTATTTCTC | + |
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Preference number: 4 (lower is better) Translates to: GCPGHHTHTSAAALATYLAPWQV*QVMLFL Trigger: GAGAAATAGCATCACCTGTCACACCTGCCAAGGAGC...AAGGTAGGTTGCTAGTGCAGCTGCAGACGTATGGGTGTGGTGTCCAGGACACCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR TCA 90 bp | GGTGGGTGTCCTGGACACCACACCCATACGTCTGCAGCTGCACTAGCAACCTACAAGCCACCAACTCATTaGCTTGCTCTGCTGGGATGT | + |
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Preference number: 4 (lower is better) Translates to: GGCPGHHTHTSAAALATYKPPTH*LALLGC Trigger: ACATCCCAGCAGAGCAAGTCAATGAGTTGGTGGCTT...GTAGGTTGCTAGTGCAGCTGCAGACGTATGGGTGTGGTGTCCAGGACACCCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR CCA 90 bp | GGTGGGTGTCCTGGACACCACACCCATACGTCTGCAGCTGCACTAGCAACCTACACAGCCTTCATGTACTaGACCTGGCTGAACAGGTTG | + |
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Preference number: 4 (lower is better) Translates to: GGCPGHHTHTSAAALATYTAFMY*TWLNRL Trigger: CAACCTGTTCAGCCAGGTCCAGTACATGAAGGCTGT...GTAGGTTGCTAGTGCAGCTGCAGACGTATGGGTGTGGTGTCCAGGACACCCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR TCA 90 bp | GGTGAGGCGGGAGGGGGAGGTATTAGGGAACAGATGCAGAGGCAGCCGCTGAGGTCACAGAAGTCCTCATaGAGATCACAATGTTGTGTA | + |
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Preference number: 4 (lower is better) Translates to: GEAGGGGIREQMQRQPLRSQKSS*RSQCCV Trigger: TACACAACATTGTGATCTTCATGAGGACTTCTGTGA...CCTCAGCGGCTGCCTCTGCATCTGTTCCCTAATACCTCCCCCTCCCGCCTCACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR GCA 90 bp | GGGCGGCTTTCCCCTAAGTGTGGGAGGATGCTTTCTGCGGGTTTCTTCTTCCTCGGATGGCAGGGAGTGTaGAGTAGAAGTACACATAGG | + |
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Preference number: 4 (lower is better) Translates to: GRLSPKCGRMLSAGFFFLGWQGV*SRSTHR Trigger: CCTATGTGTACTTCTACTGCACACTCCCTGCCATCC...GAGGAAGAAGAAACCCGCAGAAAGCATCCTCCCACACTTAGGGGAAAGCCGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR CCA 90 bp | GGTGGGTGTCCTGGACACCACACCCATACGTCTGCAGCTGCACTAGCAACCTACGTCTCCAAGGTGCTCTaGGATATGTGGCCAATGTAT | + |
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Preference number: 4 (lower is better) Translates to: GGCPGHHTHTSAAALATYVSKVL*DMWPMY Trigger: ATACATTGGCCACATATCCCAGAGCACCTTGGAGAC...GTAGGTTGCTAGTGCAGCTGCAGACGTATGGGTGTGGTGTCCAGGACACCCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR CCA 90 bp | AGACTAGGCACTGGACAGTGGTTTCGTTGGAAGGGGCGGCTTTCCCCTAAGTGTGGCTCTGAGCAGCTGTaGAATTCACCCCACAATCCA | + |
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Preference number: 4 (lower is better) Translates to: RLGTGQWFRWKGRLSPKCGSEQL*NSPHNP Trigger: TGGATTGTGGGGTGAATTCCACAGCTGCTCAGAGCC...ACACTTAGGGGAAAGCCGCCCCTTCCAACGAAACCACTGTCCAGTGCCTAGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR GCA 90 bp | CTATTTGCTAGGCACAGACTAGGCACTGGACAGTGGTTTCGTTGGAAGGGGCGGGGATGGCAGGGAGTGTaGAGTAGAAGTACACATAGG | + |
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Preference number: 4 (lower is better) Translates to: LFARHRLGTGQWFRWKGRGWQGV*SRSTHR Trigger: CCTATGTGTACTTCTACTGCACACTCCCTGCCATCC...CCGCCCCTTCCAACGAAACCACTGTCCAGTGCCTAGTCTGTGCCTAGCAAATAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR TCA 90 bp | CTTTCCCCTAAGTGTGGGAGGATGCTTTCTGCGGGTTTCTTCTTCCTCCTCTACTTCGCTGACAAAATGTaGGGGCAGAGGAGTGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: LSPKCGRMLSAGFFFLLYFADKM*GQRSAE Trigger: CTCAGCACTCCTCTGCCCTCACATTTTGTCAGCGAA...GTAGAGGAGGAAGAAGAAACCCGCAGAAAGCATCCTCCCACACTTAGGGGAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR CCA 90 bp | CTTTCCCCTAAGTGTGGGAGGATGCTTTCTGCGGGTTTCTTCTTCCTCCTCTACGGCTCTGAGCAGCTGTaGAATTCACCCCACAATCCA | + |
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Preference number: 4 (lower is better) Translates to: LSPKCGRMLSAGFFFLLYGSEQL*NSPHNP Trigger: TGGATTGTGGGGTGAATTCCACAGCTGCTCAGAGCC...GTAGAGGAGGAAGAAGAAACCCGCAGAAAGCATCCTCCCACACTTAGGGGAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR TCA 90 bp | GGTGGGTGTCCTGGACACCACACCCATACGTCTGCAGCTGCACTAGCAACCTACTCACAGAAGTCCTCATaGAGATCACAATGTTGTGTA | + |
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Preference number: 4 (lower is better) Translates to: GGCPGHHTHTSAAALATYSQKSS*RSQCCV Trigger: TACACAACATTGTGATCTTCATGAGGACTTCTGTGA...GTAGGTTGCTAGTGCAGCTGCAGACGTATGGGTGTGGTGTCCAGGACACCCACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR CCA 90 bp | GGGCGGCTTTCCCCTAAGTGTGGGAGGATGCTTTCTGCGGGTTTCTTCTTCCTCGTGCTCTGGGATATGTaGCCAATGTATGAAATCTTC | + |
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Preference number: 4 (lower is better) Translates to: GRLSPKCGRMLSAGFFFLVLWDM*PMYEIF Trigger: GAAGATTTCATACATTGGCCACATATCCCAGAGCAC...GAGGAAGAAGAAACCCGCAGAAAGCATCCTCCCACACTTAGGGGAAAGCCGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR TCA 90 bp | GGGTTTCTTCTTCCTCCTCTACTTATACCATGTGGTAAATGGGCCAGCCATAGGAAGCCACCAACTCATTaGCTTGCTCTGCTGGGATGT | + |
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Preference number: 4 (lower is better) Translates to: GFLLPPLLIPCGKWASHRKPPTH*LALLGC Trigger: ACATCCCAGCAGAGCAAGTCAATGAGTTGGTGGCTT...CCTATGGCTGGCCCATTTACCACATGGTATAAGTAGAGGAGGAAGAAGAAACCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR GCA 90 bp | GATGCTTTCTGCGGGTTTCTTCTTCCTCCTCTACTTATACCATGTGGTAAATGGGCTGTGTCTCCAAGGTaGTCTGGGATATGTGGCCAA | + |
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Preference number: 4 (lower is better) Translates to: DAFCGFLLPPLLIPCGKWAVSPR*SGICGQ Trigger: TTGGCCACATATCCCAGAGCACCTTGGAGACACAGC...CCATTTACCACATGGTATAAGTAGAGGAGGAAGAAGAAACCCGCAGAAAGCATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR CCA 90 bp | GGGTTTCTTCTTCCTCCTCTACTTATACCATGTGGTAAATGGGCCAGCCATAGGGTCTCCAAGGTGCTCTaGGATATGTGGCCAATGTAT | + |
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Preference number: 4 (lower is better) Translates to: GFLLPPLLIPCGKWASHRVSKVL*DMWPMY Trigger: ATACATTGGCCACATATCCCAGAGCACCTTGGAGAC...CCTATGGCTGGCCCATTTACCACATGGTATAAGTAGAGGAGGAAGAAGAAACCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR CCA 90 bp | GATGCTTTCTGCGGGTTTCTTCTTCCTCCTCTACTTATACCATGTGGTAAATGGAGGGGAACTGAGCGATaGCTTCCTCCTGATCTCTAT | + |
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Preference number: 4 (lower is better) Translates to: DAFCGFLLPPLLIPCGKWRGTER*LPPDLY Trigger: ATAGAGATCAGGAGGAAGCCATCGCTCAGTTCCCCT...CCATTTACCACATGGTATAAGTAGAGGAGGAAGAAGAAACCCGCAGAAAGCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCAAGAGCAGCCAGAATATCTGAATCCAATTCTTCAACCTGTAGTTGAGTGTTGTGTACCCGGATaGCAGGGAGTGTGCAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: MTQEQPEYLNPILQPVVECCVPG*QGVCSR Trigger: TCTACTGCACACTCCCTGCCATCCGGGTACACAACA...CTCAACTACAGGTTGAAGAATTGGATTCAGATATTCTGGCTGCTCTTGAGTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR TCA 90 bp | AGGATGCTTTCTGCGGGTTTCTTCTTCCTCCTCTACTTATACCATGTGGTAAATTCATCCTTCTTTCGCTaGCAAAATGTGAGGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: RMLSAGFFFLLYLYHVVNSSFFR*QNVRAE Trigger: CTCTGCCCTCACATTTTGTCAGCGAAAGAAGGATGA...ATTTACCACATGGTATAAGTAGAGGAGGAAGAAGAAACCCGCAGAAAGCATCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCAAGAGCAGCCAGAATATCTGAATCCAATTCTTCAACCTGTAGTTGAGTTCATGTACTGGACCTaGCTGAACAGGTTGGTGACC | + |
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Preference number: 4 (lower is better) Translates to: MTQEQPEYLNPILQPVVEFMYWT*LNRLVT Trigger: GGTCACCAACCTGTTCAGCCAGGTCCAGTACATGAA...CTCAACTACAGGTTGAAGAATTGGATTCAGATATTCTGGCTGCTCTTGAGTCAT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR CCA 90 bp | TATTTTTCTATCAAATTCCCAATCTATATCCAGCCAGTGGATCAAAGGTCCGTCTGTTGTGTACCCGGATaGCAGGGAGTGTGCAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: YFSIKFPIYIQPVDQRSVCCVPG*QGVCSR Trigger: TCTACTGCACACTCCCTGCCATCCGGGTACACAACA...GACGGACCTTTGATCCACTGGCTGGATATAGATTGGGAATTTGATAGAAAAATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR CCA 90 bp | TATTTTTCTATCAAATTCCCAATCTATATCCAGCCAGTGGATCAAAGGTCCGTCAGGGGAACTGAGCGATaGCTTCCTCCTGATCTCTAT | + |
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Preference number: 4 (lower is better) Translates to: YFSIKFPIYIQPVDQRSVRGTER*LPPDLY Trigger: ATAGAGATCAGGAGGAAGCCATCGCTCAGTTCCCCT...GACGGACCTTTGATCCACTGGCTGGATATAGATTGGGAATTTGATAGAAAAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR CCA 90 bp | TATTTTTCTATCAAATTCCCAATCTATATCCAGCCAGTGGATCAAAGGTCCGTCTTCATGTACTGGACCTaGCTGAACAGGTTGGTGACC | + |
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Preference number: 4 (lower is better) Translates to: YFSIKFPIYIQPVDQRSVFMYWT*LNRLVT Trigger: GGTCACCAACCTGTTCAGCCAGGTCCAGTACATGAA...GACGGACCTTTGATCCACTGGCTGGATATAGATTGGGAATTTGATAGAAAAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR CCA 90 bp | GATGCTTTCTGCGGGTTTCTTCTTCCTCCTCTACTTATACCATGTGGTAAATGGGTGCTCTGGGATATGTaGCCAATGTATGAAATCTTC | + |
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Preference number: 4 (lower is better) Translates to: DAFCGFLLPPLLIPCGKWVLWDM*PMYEIF Trigger: GAAGATTTCATACATTGGCCACATATCCCAGAGCAC...CCATTTACCACATGGTATAAGTAGAGGAGGAAGAAGAAACCCGCAGAAAGCATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR CAA 90 bp | GGTGAGGCGGGAGGGGGAGGTATTAGGGAACAGATGCAGAGGCAGCCGCTGAGGATGAAGATCACAATGTaGTGTACCCGGATGGCAGGG | + |
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Preference number: 5 (lower is better) Translates to: GEAGGGGIREQMQRQPLRMKITM*CTRMAG Trigger: CCCTGCCATCCGGGTACACAACATTGTGATCTTCAT...CCTCAGCGGCTGCCTCTGCATCTGTTCCCTAATACCTCCCCCTCCCGCCTCACC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS TCA 90 bp | GACGCAGCCTCTGGTCACTGTGGGGGATCAAAGCCACCAACTCATTaGCTTGCTCTGCTGGGATGTAGCCTGCTCCTTGGCAGGTGTGAC | + |
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Preference number: 5 (lower is better) Translates to: DAASGHCGGSKPPTH*LALLGCSLLLGRCD Trigger: GTCACACCTGCCAAGGAGCAGGCTACATCCCAGCAGAGCAAGTCAATGAGTTGGTGGCTTTGATCCCCCACAGTGACCAGAGGCTGCGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 ENSMUST00000229433.2 ENSMUST00000230072.2 ENSMUST00000231144.2 |
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| CDS-3UTR CAA 90 bp | CTATTTGCTAGGCACAGACTAGGCACTGGACAGTGGTTTCGTTGGAAGGGGCGGCACCAACTCATTGACTaGCTCTGCTGGGATGTAGCC | + |
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Preference number: 5 (lower is better) Translates to: LFARHRLGTGQWFRWKGRHQLID*LCWDVA Trigger: GGCTACATCCCAGCAGAGCAAGTCAATGAGTTGGTG...CCGCCCCTTCCAACGAAACCACTGTCCAGTGCCTAGTCTGTGCCTAGCAAATAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS GCA 90 bp | GAAGACGGTCCTCCCACCTCAGCCTTCACGGTAAAATTCACCAGGTaGTCACTCCTAGGGGCAATGAGTGAGACATTCGTGGTTGTGTAC | + |
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Preference number: 5 (lower is better) Translates to: EDGPPTSAFTVKFTR*SLLGAMSETFVVVY Trigger: GTACACAACCACGAATGTCTCACTCATTGCCCCTAGGAGTGAGCACCTGGTGAATTTTACCGTGAAGGCTGAGGTGGGAGGACCGTCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS CCA 90 bp | GACTTTTGTCACTTTGATGCCGTTATCGTCCACGAGGACCGAGTGTaGAAACAGAAAGAAGAACACCAGGCCAGATGCCAGGAGACACAG | + |
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Preference number: 5 (lower is better) Translates to: DFCHFDAVIVHEDRV*KQKEEHQARCQETQ Trigger: CTGTGTCTCCTGGCATCTGGCCTGGTGTTCTTCTTTCTGTTTCCACACTCGGTCCTCGTGGACGATAACGGCATCAAAGTGACAAAAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 ENSMUST00000229433.2 ENSMUST00000231144.2 |
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| CDS GCA 90 bp | CTGTGGAATTCACCCCACAATCCACATAGTGCTGTGTCTCCAAGGTaGTCTGGGATATGTGGCCAATGTATGAAATCTTCACAGAAGTCC | + |
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Preference number: 5 (lower is better) Translates to: LWNSPHNPHSAVSPR*SGICGQCMKSSQKS Trigger: GGACTTCTGTGAAGATTTCATACATTGGCCACATATCCCAGAGCACCTTGGAGACACAGCACTATGTGGATTGTGGGGTGAATTCCACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS TCA 90 bp | TCTGGGATATGTGGCCAATGTATGAAATCTTCACAGAAGTCCTCATaGAGATCACAATGTTGTGTACCCGGATGGCAGGGAGTGTGCAGT | + |
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Preference number: 5 (lower is better) Translates to: SGICGQCMKSSQKSS*RSQCCVPGWQGVCS Trigger: ACTGCACACTCCCTGCCATCCGGGTACACAACATTGTGATCTTCATGAGGACTTCTGTGAAGATTTCATACATTGGCCACATATCCCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR CAA 90 bp | TGTTACTCTGGTCTGAAAACCTGGAACCCTGGTTCATCTCAACTTATAATGACTCACCAACTCATTGACTaGCTCTGCTGGGATGTAGCC | + |
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Preference number: 5 (lower is better) Translates to: CYSGLKTWNPGSSQLIMTHQLID*LCWDVA Trigger: GGCTACATCCCAGCAGAGCAAGTCAATGAGTTGGTG...AGTCATTATAAGTTGAGATGAACCAGGGTTCCAGGTTTTCAGACCAGAGTAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS-3UTR CAA 90 bp | TGTTACTCTGGTCTGAAAACCTGGAACCCTGGTTCATCTCAACTTATAATGACTATGAAGATCACAATGTaGTGTACCCGGATGGCAGGG | + |
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Preference number: 5 (lower is better) Translates to: CYSGLKTWNPGSSQLIMTMKITM*CTRMAG Trigger: CCCTGCCATCCGGGTACACAACATTGTGATCTTCAT...AGTCATTATAAGTTGAGATGAACCAGGGTTCCAGGTTTTCAGACCAGAGTAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS CCA 72 bp | GTGGTTGTGTACGAGCCGACCACAGCCTTCATGTACTaGACCTGGCTGAACAGGTTGGTGACCGCCACAGGA | + |
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Preference number: 6 (lower is better) Translates to: VVVYEPTTAFMY*TWLNRLVTATG Trigger: TCCTGTGGCGGTCACCAACCTGTTCAGCCAGGTCCAGTACATGAAGGCTGTGGTCGGCTCGTACACAACCAC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS TCA 72 bp | TCTGGTCACTGTGGGGGATCAAAGCCACCAACTCATTaGCTTGCTCTGCTGGGATGTAGCCTGCTCCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: SGHCGGSKPPTH*LALLGCSLLLG Trigger: GCCAAGGAGCAGGCTACATCCCAGCAGAGCAAGTCAATGAGTTGGTGGCTTTGATCCCCCACAGTGACCAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 ENSMUST00000229433.2 ENSMUST00000230072.2 ENSMUST00000231144.2 |
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| CDS GCA 72 bp | GTGGGGGATCAAAGCCACCAACTCATTGACTTGCTCTaGTGGGATGTAGCCTGCTCCTTGGCAGGTGTGACA | + |
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Preference number: 6 (lower is better) Translates to: VGDQSHQLIDLL*WDVACSLAGVT Trigger: TGTCACACCTGCCAAGGAGCAGGCTACATCCCAGCAGAGCAAGTCAATGAGTTGGTGGCTTTGATCCCCCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 ENSMUST00000229433.2 ENSMUST00000230072.2 ENSMUST00000231144.2 |
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| CDS CCA 72 bp | GGGGATCAAAGCCACCAACTCATTGACTTGCTCTGCTaGGATGTAGCCTGCTCCTTGGCAGGTGTGACAGGT | + |
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Preference number: 6 (lower is better) Translates to: GDQSHQLIDLLC*DVACSLAGVTG Trigger: ACCTGTCACACCTGCCAAGGAGCAGGCTACATCCCAGCAGAGCAAGTCAATGAGTTGGTGGCTTTGATCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 ENSMUST00000229433.2 ENSMUST00000230072.2 ENSMUST00000231144.2 |
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| CDS CAA 72 bp | GTCACTGTGGGGGATCAAAGCCACCAACTCATTGACTaGCTCTGCTGGGATGTAGCCTGCTCCTTGGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: VTVGDQSHQLID*LCWDVACSLAG Trigger: ACCTGCCAAGGAGCAGGCTACATCCCAGCAGAGCAAGTCAATGAGTTGGTGGCTTTGATCCCCCACAGTGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 ENSMUST00000229433.2 ENSMUST00000230072.2 ENSMUST00000231144.2 |
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| CDS GCA 72 bp | CCTCCCACCTCAGCCTTCACGGTAAAATTCACCAGGTaGTCACTCCTAGGGGCAATGAGTGAGACATTCGTG | + |
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Preference number: 6 (lower is better) Translates to: PPTSAFTVKFTR*SLLGAMSETFV Trigger: CACGAATGTCTCACTCATTGCCCCTAGGAGTGAGCACCTGGTGAATTTTACCGTGAAGGCTGAGGTGGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS CAA 90 bp | AGCCACCAACTCATTGACTTGCTCTGCTGGGATGTAGCCTGCTCCTaGGCAGGTGTGACAGGTGATGCTATTTCTCCCAGTGAACTCCAC | + |
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Preference number: 6 (lower is better) Translates to: SHQLIDLLCWDVACS*AGVTGDAISPSELH Trigger: GTGGAGTTCACTGGGAGAAATAGCATCACCTGTCACACCTGCCAAGGAGCAGGCTACATCCCAGCAGAGCAAGTCAATGAGTTGGTGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 ENSMUST00000229433.2 ENSMUST00000230072.2 ENSMUST00000231144.2 |
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| CDS TCA 72 bp | AAAATTCACCAGGTGCTCACTCCTAGGGGCAATGAGTaGGACATTCGTGGTTGTGTACGAGCCGACCACAGC | + |
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Preference number: 6 (lower is better) Translates to: KIHQVLTPRGNE*DIRGCVRADHS Trigger: GCTGTGGTCGGCTCGTACACAACCACGAATGTCTCACTCATTGCCCCTAGGAGTGAGCACCTGGTGAATTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS CCA 72 bp | CACTTTGATGCCGTTATCGTCCACGAGGACCGAGTGTaGAAACAGAAAGAAGAACACCAGGCCAGATGCCAG | + |
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Preference number: 6 (lower is better) Translates to: HFDAVIVHEDRV*KQKEEHQARCQ Trigger: CTGGCATCTGGCCTGGTGTTCTTCTTTCTGTTTCCACACTCGGTCCTCGTGGACGATAACGGCATCAAAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 ENSMUST00000229433.2 ENSMUST00000231144.2 |
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| CDS CAA 72 bp | CTCATTGACTTGCTCTGCTGGGATGTAGCCTGCTCCTaGGCAGGTGTGACAGGTGATGCTATTTCTCCCAGT | + |
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Preference number: 6 (lower is better) Translates to: LIDLLCWDVACS*AGVTGDAISPS Trigger: ACTGGGAGAAATAGCATCACCTGTCACACCTGCCAAGGAGCAGGCTACATCCCAGCAGAGCAAGTCAATGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 ENSMUST00000229433.2 ENSMUST00000230072.2 ENSMUST00000231144.2 |
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| CDS GCA 72 bp | CACCAACTCATTGACTTGCTCTGCTGGGATGTAGCCTaGTCCTTGGCAGGTGTGACAGGTGATGCTATTTCT | + |
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Preference number: 6 (lower is better) Translates to: HQLIDLLCWDVA*SLAGVTGDAIS Trigger: AGAAATAGCATCACCTGTCACACCTGCCAAGGAGCAGGCTACATCCCAGCAGAGCAAGTCAATGAGTTGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 ENSMUST00000229433.2 ENSMUST00000230072.2 ENSMUST00000231144.2 |
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| CDS GCA 72 bp | AGATCACAATGTTGTGTACCCGGATGGCAGGGAGTGTaGAGTAGAAGTACACATAGGAAGACGGTCCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: RSQCCVPGWQGV*SRSTHRKTVLP Trigger: TGGGAGGACCGTCTTCCTATGTGTACTTCTACTGCACACTCCCTGCCATCCGGGTACACAACATTGTGATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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| CDS CAA 90 bp | AGGACCACAAGGGAGTCCTGTTCATTAAACGTGACTTTTGTCACTTaGATGCCGTTATCGTCCACGAGGACCGAGTGTGGAAACAGAAAG | + |
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Preference number: 6 (lower is better) Translates to: RTTRESCSLNVTFVT*MPLSSTRTECGNRK Trigger: CTTTCTGTTTCCACACTCGGTCCTCGTGGACGATAACGGCATCAAAGTGACAAAAGTCACGTTTAATGAACAGGACTCCCTTGTGGTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 ENSMUST00000229433.2 ENSMUST00000231144.2 |
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| CDS GCA 72 bp | TCACCCCACAATCCACATAGTGCTGTGTCTCCAAGGTaGTCTGGGATATGTGGCCAATGTATGAAATCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SPHNPHSAVSPR*SGICGQCMKSS Trigger: TGAAGATTTCATACATTGGCCACATATCCCAGAGCACCTTGGAGACACAGCACTATGTGGATTGTGGGGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000064200.9 ENSMUST00000229428.2 |
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