Pregenerated sensors for TMEFF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028347Ensembl transcript IDs: ENSMUST00000030032.13, ENSMUST00000123476.8, ENSMUST00000130834.8, ENSMUST00000141720.2
Found 93 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTAGTTCATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATaGCTTTATGACCACCGTGAAGTGGGTCCATCCGTCTCTGCAAAA | + |
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Preference number: 1 (lower is better) Translates to: LVHALSFAVVTGEEV*LYDHREVGPSVSAK Trigger: TTTTGCAGAGACGGATGGACCCACTTCACGGTGGTCATAAAGTCATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCATGAACTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| 3UTR CCA 90 bp | CTGTGGTCACTGGGGAAGAAGTATGACTTTATGACCACCGTGAAGTaGGTCCATCCGTCTCTGCAAAAATATTACATTCCATGGATAAAG | + |
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Preference number: 1 (lower is better) Translates to: LWSLGKKYDFMTTVK*VHPSLQKYYIPWIK Trigger: CTTTATCCATGGAATGTAATATTTTTGCAGAGACGGATGGACCCACTTCACGGTGGTCATAAAGTCATACTTCTTCCCCAGTGACCACAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| 3UTR TCA 90 bp | CTACATGTTAAACGCCTCGATACATTCTACTCACAGTTCAGACTTTaGAACACCAACGATCTATTAATAGAGCTACTACAGGACAGATTT | + |
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Preference number: 1 (lower is better) Translates to: LHVKRLDTFYSQFRL*NTNDLLIELLQDRF Trigger: AAATCTGTCCTGTAGTAGCTCTATTAATAGATCGTTGGTGTTTCAAAGTCTGAACTGTGAGTAGAATGTATCGAGGCGTTTAACATGTAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030032.13 |
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| 3UTR TCA 90 bp | TTGAAACACCAACGATCTATTAATAGAGCTACTACAGGACAGATTTaGATTAGAGGTCTTAGGTCATTTTTAAGCTCACTTTCAGAGCAC | + |
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Preference number: 1 (lower is better) Translates to: LKHQRSINRATTGQI*IRGLRSFLSSLSEH Trigger: GTGCTCTGAAAGTGAGCTTAAAAATGACCTAAGACCTCTAATTCAAATCTGTCCTGTAGTAGCTCTATTAATAGATCGTTGGTGTTTCAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030032.13 |
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| 3UTR-3UTR GCA 90 bp | GTGAAGTGGGTCCATCCGTCTCTGCAAAAATATTACATTCCATGGATAAAGAACACATCACGTGGTCAGTaGGCATATAAAAGTCCGCGG | + |
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Preference number: 2 (lower is better) Translates to: VKWVHPSLQKYYIPWIKNTSRGQ*AYKSPR Trigger: CCGCGGACTTTTATATGCGCACTGACCACGTGATGT...GTTCTTTATCCATGGAATGTAATATTTTTGCAGAGACGGATGGACCCACTTCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| 3UTR-3UTR GCA 90 bp | CTTTACTTTAGTTCATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGACATCACGTGGTCAGTaGGCATATAAAAGTCCGCGG | + |
|
Preference number: 2 (lower is better) Translates to: LYFSSCFVICCGHWGRSMTSRGQ*AYKSPR Trigger: CCGCGGACTTTTATATGCGCACTGACCACGTGATGT...CATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCATGAACTAAAGTAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| 3UTR-3UTR GCA 90 bp | AACGCCTCGATACATTCTACTCACAGTTCAGACTTTGAAACACCAACGATCTATTACTGTAGGTTTTATTaGAATCTGCTCATTAAACGC | + |
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Preference number: 2 (lower is better) Translates to: NASIHSTHSSDFETPTIYYCRFY*NLLIKR Trigger: GCGTTTAATGAGCAGATTGCAATAAAACCTACAGTA...ATAGATCGTTGGTGTTTCAAAGTCTGAACTGTGAGTAGAATGTATCGAGGCGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030032.13 |
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| 3UTR TCA 72 bp | GCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATaGCTTTATGACCACCGTGAAGTGGGTCCATCCGTC | + |
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Preference number: 3 (lower is better) Translates to: ALSFAVVTGEEV*LYDHREVGPSV Trigger: GACGGATGGACCCACTTCACGGTGGTCATAAAGTCATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| 3UTR CCA 72 bp | CTGGGGAAGAAGTATGACTTTATGACCACCGTGAAGTaGGTCCATCCGTCTCTGCAAAAATATTACATTCCA | + |
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Preference number: 3 (lower is better) Translates to: LGKKYDFMTTVK*VHPSLQKYYIP Trigger: TGGAATGTAATATTTTTGCAGAGACGGATGGACCCACTTCACGGTGGTCATAAAGTCATACTTCTTCCCCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| 3UTR TCA 72 bp | AAACGCCTCGATACATTCTACTCACAGTTCAGACTTTaGAACACCAACGATCTATTAATAGAGCTACTACAG | + |
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Preference number: 3 (lower is better) Translates to: KRLDTFYSQFRL*NTNDLLIELLQ Trigger: CTGTAGTAGCTCTATTAATAGATCGTTGGTGTTTCAAAGTCTGAACTGTGAGTAGAATGTATCGAGGCGTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030032.13 |
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| 3UTR CCA 72 bp | AACATAGTCTTTAAACTCTACATGCATACTTTTGACTaGCTAAACTACATGTTAAACGCCTCGATACATTCT | + |
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Preference number: 3 (lower is better) Translates to: NIVFKLYMHTFD*LNYMLNASIHS Trigger: AGAATGTATCGAGGCGTTTAACATGTAGTTTAGCCAGTCAAAAGTATGCATGTAGAGTTTAAAGACTATGTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030032.13 |
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| CDS-3UTR TCA 90 bp | ACAAGTCTTAGTAGTATCACCATGTGTTACAAATTCGTGAAGCCAATTTCTGTAGTGAGCCCCTGCTCCTaGGCCTTCCTCCTCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: TSLSSITMCYKFVKPISVVSPCS*AFLLCS Trigger: GGAGCAGAGGAGGAAGGCTCAGGAGCAGGGGCTCAC...TACAGAAATTGGCTTCACGAATTTGTAACACATGGTGATACTACTAAGACTTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130834.8 |
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| CDS-3UTR GCA 90 bp | TACTTTAGTTCATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGACTCTGAGCAGTTGCTCTTaGCTCTGCCTCCCGGACAGT | + |
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Preference number: 4 (lower is better) Translates to: YFSSCFVICCGHWGRSMTLSSCS*LCLPDS Trigger: ACTGTCCGGGAGGCAGAGGCAAGAGCAACTGCTCAG...AGTCATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCATGAACTAAAGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR CCA 90 bp | TATGACCACCGTGAAGTGGGTCCATCCGTCTCTGCAAAAATATTACATTCCATGTGCACGGTCCACACTTaGAATGTTTCCTGTGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: YDHREVGPSVSAKILHSMCTVHT*NVSCEP Trigger: GGGCTCACAGGAAACATTCCAAGTGTGGACCGTGCA...CATGGAATGTAATATTTTTGCAGAGACGGATGGACCCACTTCACGGTGGTCATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR TCA 90 bp | CTTTACTTTAGTTCATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGTTGGAATGTTTCCTGTaGGCCCCTGCTCCTGAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: LYFSSCFVICCGHWGRSMLECFL*APAPEP Trigger: AGGCTCAGGAGCAGGGGCTCACAGGAAACATTCCAA...CATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCATGAACTAAAGTAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR GCA 90 bp | AAAAGACATAATAAATGTACATCACGTGGTCAGTGCGCATATAAAAGTCCGCGGCCCAGGTTCTGCTTCTaGCTCCGCCCTCTATTGTTC | + |
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Preference number: 4 (lower is better) Translates to: KRHNKCTSRGQCAYKSPRPRFCF*LRPLLF Trigger: GAACAATAGAGGGCGGAGGCAGAAGCAGAACCTGGG...CCGCGGACTTTTATATGCGCACTGACCACGTGATGTACATTTATTATGTCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR CCA 90 bp | ATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGACTTTATGACCACCACGGTTATGTCTTTCTaGTGCTTGCAAGCAGCCCTC | + |
|
Preference number: 4 (lower is better) Translates to: MLCHLLWSLGKKYDFMTTTVMSF*CLQAAL Trigger: GAGGGCTGCTTGCAAGCACCAGAAAGACATAACCGT...GGTGGTCATAAAGTCATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR TCA 90 bp | TTTAGTTCATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGACTTTATGCAAGCAGCCCTCCTaGGAAAGCACTCATTCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: FSSCFVICCGHWGRSMTLCKQPS*ESTHSG Trigger: ACCAGAATGAGTGCTTTCTCAGGAGGGCTGCTTGCA...TAAAGTCATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCATGAACTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR TCA 90 bp | TATGACTTTATGACCACCGTGAAGTGGGTCCATCCGTCTCTGCAAAAATATTACGTGTCTGAAGTAAAATaGCCCAGGTTCTGCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: YDFMTTVKWVHPSLQKYYVSEVK*PRFCFC Trigger: GCAGAAGCAGAACCTGGGTCATTTTACTTCAGACAC...GTAATATTTTTGCAGAGACGGATGGACCCACTTCACGGTGGTCATAAAGTCATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR GCA 90 bp | CAGTCAAAAACTGTTGTAGCTAAATATTCTAAATACGAGCCAACAGTACTACACCTGAGCAGTTGCTCTTaGCTCTGCCTCCCGGACAGT | + |
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Preference number: 4 (lower is better) Translates to: QSKTVVAKYSKYEPTVLHLSSCS*LCLPDS Trigger: ACTGTCCGGGAGGCAGAGGCAAGAGCAACTGCTCAG...GTGTAGTACTGTTGGCTCGTATTTAGAATATTTAGCTACAACAGTTTTTGACTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR GCA 90 bp | CTTTACTTTAGTTCATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGTTAATTCTGAGCAGTTaGTCTTGCCTCTGCCTCCCG | + |
|
Preference number: 4 (lower is better) Translates to: LYFSSCFVICCGHWGRSMLILSS*SCLCLP Trigger: CGGGAGGCAGAGGCAAGAGCAACTGCTCAGAATTAA...CATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCATGAACTAAAGTAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR CCA 90 bp | TACTTTAGTTCATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGACTACGGTTATGTCTTTCTaGTGCTTGCAAGCAGCCCTC | + |
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Preference number: 4 (lower is better) Translates to: YFSSCFVICCGHWGRSMTTVMSF*CLQAAL Trigger: GAGGGCTGCTTGCAAGCACCAGAAAGACATAACCGT...AGTCATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCATGAACTAAAGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR TCA 90 bp | ACAAGTCTTAGTAGTATCACCATGTGTTACAAATTCGTGAAGCCAATTTCTGTATTGGAATGTTTCCTGTaGGCCCCTGCTCCTGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: TSLSSITMCYKFVKPISVLECFL*APAPEP Trigger: AGGCTCAGGAGCAGGGGCTCACAGGAAACATTCCAA...TACAGAAATTGGCTTCACGAATTTGTAACACATGGTGATACTACTAAGACTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR TCA 90 bp | GTGGGTCCATCCGTCTCTGCAAAAATATTACATTCCATGGATAAAGAACAAGTCGTGTCTGAAGTAAAATaGCCCAGGTTCTGCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: VGPSVSAKILHSMDKEQVVSEVK*PRFCFC Trigger: GCAGAAGCAGAACCTGGGTCATTTTACTTCAGACAC...GACTTGTTCTTTATCCATGGAATGTAATATTTTTGCAGAGACGGATGGACCCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR GCA 90 bp | TTTAGTTCATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGACTTTATTAATTCTGAGCAGTTaGTCTTGCCTCTGCCTCCCG | + |
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Preference number: 4 (lower is better) Translates to: FSSCFVICCGHWGRSMTLLILSS*SCLCLP Trigger: CGGGAGGCAGAGGCAAGAGCAACTGCTCAGAATTAA...TAAAGTCATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCATGAACTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR GCA 90 bp | CAGTCAAAAACTGTTGTAGCTAAATATTCTAAATACGAGCCAACAGTACTACACCCCAGGTTCTGCTTCTaGCTCCGCCCTCTATTGTTC | + |
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Preference number: 4 (lower is better) Translates to: QSKTVVAKYSKYEPTVLHPRFCF*LRPLLF Trigger: GAACAATAGAGGGCGGAGGCAGAAGCAGAACCTGGG...GTGTAGTACTGTTGGCTCGTATTTAGAATATTTAGCTACAACAGTTTTTGACTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR TCA 90 bp | TACATTCTACTCACAGTTCAGACTTTGAAACACCAACGATCTATTAATAGAGCTTGCAAGCAGCCCTCCTaGGAAAGCACTCATTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: YILLTVQTLKHQRSINRACKQPS*ESTHSG Trigger: ACCAGAATGAGTGCTTTCTCAGGAGGGCTGCTTGCA...AGCTCTATTAATAGATCGTTGGTGTTTCAAAGTCTGAACTGTGAGTAGAATGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030032.13 |
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| CDS-3UTR GCA 90 bp | CTTTACTTTAGTTCATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGTGCTCCAATAATGGCTaGGATAAGAACATGGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: LYFSSCFVICCGHWGRSMCSNNG*DKNMGE Trigger: CTCACCCATGTTCTTATCGCAGCCATTATTGGAGCA...CATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCATGAACTAAAGTAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR CCA 90 bp | CAGTCAAAAACTGTTGTAGCTAAATATTCTAAATACGAGCCAACAGTACTACACTGCACGGTCCACACTTaGAATGTTTCCTGTGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: QSKTVVAKYSKYEPTVLHCTVHT*NVSCEP Trigger: GGGCTCACAGGAAACATTCCAAGTGTGGACCGTGCA...GTGTAGTACTGTTGGCTCGTATTTAGAATATTTAGCTACAACAGTTTTTGACTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR CCA 90 bp | TACATTCTACTCACAGTTCAGACTTTGAAACACCAACGATCTATTAATAGAGCTTCTGTGTCTGTGCAGTaGCCGAGATGCCTTATGTCG | + |
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Preference number: 4 (lower is better) Translates to: YILLTVQTLKHQRSINRASVSVQ*PRCLMS Trigger: CGACATAAGGCATCTCGGCCACTGCACAGACACAGA...AGCTCTATTAATAGATCGTTGGTGTTTCAAAGTCTGAACTGTGAGTAGAATGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030032.13 |
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| CDS-3UTR CCA 90 bp | ATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGACTTTATGACCACCGAGCTTCTGCCTACTTaGTACTACATAGAGAATACT | + |
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Preference number: 4 (lower is better) Translates to: MLCHLLWSLGKKYDFMTTELLPT*YYIENT Trigger: AGTATTCTCTATGTAGTACCAAGTAGGCAGAAGCTC...GGTGGTCATAAAGTCATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR CCA 90 bp | TATGACCACCGTGAAGTGGGTCCATCCGTCTCTGCAAAAATATTACATTCCATGGAGCTTCTGCCTACTTaGTACTACATAGAGAATACT | + |
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Preference number: 4 (lower is better) Translates to: YDHREVGPSVSAKILHSMELLPT*YYIENT Trigger: AGTATTCTCTATGTAGTACCAAGTAGGCAGAAGCTC...CATGGAATGTAATATTTTTGCAGAGACGGATGGACCCACTTCACGGTGGTCATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR CCA 90 bp | CTTTACTTTAGTTCATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGGCCCTCTATTGTTCTTaGGGCATTTCCTTGTTATGC | + |
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Preference number: 4 (lower is better) Translates to: LYFSSCFVICCGHWGRSMALYCS*GISLLC Trigger: GCATAACAAGGAAATGCCCCAAGAACAATAGAGGGC...CATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCATGAACTAAAGTAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR CCA 90 bp | TACTTTAGTTCATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGACTGCCCTCTATTGTTCTTaGGGCATTTCCTTGTTATGC | + |
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Preference number: 4 (lower is better) Translates to: YFSSCFVICCGHWGRSMTALYCS*GISLLC Trigger: GCATAACAAGGAAATGCCCCAAGAACAATAGAGGGC...AGTCATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCATGAACTAAAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR GCA 90 bp | GTGAAGTGGGTCCATCCGTCTCTGCAAAAATATTACATTCCATGGATAAAGAACTATGCACATGACGATTaGTACTATAATGGCGATCTG | + |
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Preference number: 4 (lower is better) Translates to: VKWVHPSLQKYYIPWIKNYAHDD*YYNGDL Trigger: CAGATCGCCATTATAGTAGCAATCGTCATGTGCATA...GTTCTTTATCCATGGAATGTAATATTTTTGCAGAGACGGATGGACCCACTTCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR CCA 90 bp | TTTAGTTCATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGACTTTAAATTCACATTTCCCATaGATGCAGTACCCATTGAGG | + |
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Preference number: 4 (lower is better) Translates to: FSSCFVICCGHWGRSMTLNSHFP*MQYPLR Trigger: CCTCAATGGGTACTGCATCCATGGGAAATGTGAATT...TAAAGTCATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCATGAACTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR CCA 90 bp | ACAAGTCTTAGTAGTATCACCATGTGTTACAAATTCGTGAAGCCAATTTCTGTAGCTGCGATAAGAACATaGGTGAGCTTCTGCCTACTT | + |
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Preference number: 4 (lower is better) Translates to: TSLSSITMCYKFVKPISVAAIRT*VSFCLL Trigger: AAGTAGGCAGAAGCTCACCCATGTTCTTATCGCAGC...TACAGAAATTGGCTTCACGAATTTGTAACACATGGTGATACTACTAAGACTTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR CCA 90 bp | CAGTCAAAAACTGTTGTAGCTAAATATTCTAAATACGAGCCAACAGTACTACACGCTGCGATAAGAACATaGGTGAGCTTCTGCCTACTT | + |
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Preference number: 4 (lower is better) Translates to: QSKTVVAKYSKYEPTVLHAAIRT*VSFCLL Trigger: AAGTAGGCAGAAGCTCACCCATGTTCTTATCGCAGC...GTGTAGTACTGTTGGCTCGTATTTAGAATATTTAGCTACAACAGTTTTTGACTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR CCA 90 bp | AGTTTAGCTGATACTGTAGGTTTTATTGCAATCTGCTCATTAAACGCCCTATCTAATTCACATTTCCCATaGATGCAGTACCCATTGAGG | + |
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Preference number: 4 (lower is better) Translates to: SLADTVGFIAICSLNALSNSHFP*MQYPLR Trigger: CCTCAATGGGTACTGCATCCATGGGAAATGTGAATT...AGATAGGGCGTTTAATGAGCAGATTGCAATAAAACCTACAGTATCAGCTAAACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030032.13 |
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| CDS-3UTR TCA 90 bp | ACAAGTCTTAGTAGTATCACCATGTGTTACAAATTCGTGAAGCCAATTTCTGTAATTCATCACACACTCTaGTGTCAGATTCTCTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: TSLSSITMCYKFVKPISVIHHTL*CQILSD Trigger: ATCTGAGAGAATCTGACATCAGAGTGTGTGATGAAT...TACAGAAATTGGCTTCACGAATTTGTAACACATGGTGATACTACTAAGACTTGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
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| CDS-3UTR GCA 90 bp | TACATTCTACTCACAGTTCAGACTTTGAAACACCAACGATCTATTAATAGAGCTTATGCACATGACGATTaGTACTATAATGGCGATCTG | + |
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Preference number: 4 (lower is better) Translates to: YILLTVQTLKHQRSINRAYAHDD*YYNGDL Trigger: CAGATCGCCATTATAGTAGCAATCGTCATGTGCATA...AGCTCTATTAATAGATCGTTGGTGTTTCAAAGTCTGAACTGTGAGTAGAATGTA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030032.13 |
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| 3UTR CAA 72 bp | AGGTTTTATTGCAATCTGCTCATTAAACGCCCTATCTaGACAATATCTAAACCTATTTTCAGTGACCTGTTC | + |
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Preference number: 4 (lower is better) Translates to: RFYCNLLIKRPI*TISKPIFSDLF Trigger: GAACAGGTCACTGAAAATAGGTTTAGATATTGTCAAGATAGGGCGTTTAATGAGCAGATTGCAATAAAACCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030032.13 |
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| CDS GCA 90 bp | TGTCAGATTCTCTCAGATTTAATTCTGAGCAGTTGCTCTTGCCTCTaGCTCCCGGACAGTCCCCGCCGCCGCCCGCGGGCTGGTTGGACG | + |
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Preference number: 5 (lower is better) Translates to: CQILSDLILSSCSCL*LPDSPRRRPRAGWT Trigger: CGTCCAACCAGCCCGCGGGCGGCGGCGGGGACTGTCCGGGAGGCAGAGGCAAGAGCAACTGCTCAGAATTAAATCTGAGAGAATCTGACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
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| CDS CCA 90 bp | CCGCATCCTCGTCACACTCGGCCTTGTACTTGCACGGTCCACACTTaGAATGTTTCCTGTGAGCCCCTGCTCCTGAGCCTTCCTCCTCTC | + |
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Preference number: 5 (lower is better) Translates to: PHPRHTRPCTCTVHT*NVSCEPLLLSLPPL Trigger: GAGAGGAGGAAGGCTCAGGAGCAGGGGCTCACAGGAAACATTCCAAGTGTGGACCGTGCAAGTACAAGGCCGAGTGTGACGAGGATGCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 |
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| CDS CCA 90 bp | CCGCATCCTCGTCACACTCGGCCTTGTACTTGCACGGTCCACACTTaGAATGTTTCCTGTGAGCCCCTGCTCCTGAGCCTTCCTCCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: PHPRHTRPCTCTVHT*NVSCEPLLLSLPPL Trigger: CAGAGGAGGAAGGCTCAGGAGCAGGGGCTCACAGGAAACATTCCAAGTGTGGACCGTGCAAGTACAAGGCCGAGTGTGACGAGGATGCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130834.8 |
||
| CDS GCA 90 bp | CACACCCAACGTTCTCCGCATCCTCGTCACACTCGGCCTTGTACTTaGACGGTCCACACTTGGAATGTTTCCTGTGAGCCCCTGCTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: HTQRSPHPRHTRPCT*TVHTWNVSCEPLLL Trigger: CAGGAGCAGGGGCTCACAGGAAACATTCCAAGTGTGGACCGTGCAAGTACAAGGCCGAGTGTGACGAGGATGCGGAGAACGTTGGGTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
||
| CDS-3UTR CAA 90 bp | ATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGACTTTATGACCACCGGTAGGTGTCCCCGTTaGACCCACAGACAGGGATGT | + |
|
Preference number: 5 (lower is better) Translates to: MLCHLLWSLGKKYDFMTTGRCPR*THRQGC Trigger: ACATCCCTGTCTGTGGGTCAAACGGGGACACCTACC...GGTGGTCATAAAGTCATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
||
| CDS GCA 90 bp | ACATCTTCCCTTTCATCACCTGCATCTTTCACATCTGGCCGATACTaGAGCCCGTCGTCCTTCTTTCCCAATAAACTCACATCATCTGTG | + |
|
Preference number: 5 (lower is better) Translates to: TSSLSSPASFTSGRY*SPSSFFPNKLTSSV Trigger: CACAGATGATGTGAGTTTATTGGGAAAGAAGGACGACGGGCTGCAGTATCGGCCAGATGTGAAAGATGCAGGTGATGAAAGGGAAGATGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 ENSMUST00000141720.2 |
||
| CDS-3UTR CAA 90 bp | TATGACCACCGTGAAGTGGGTCCATCCGTCTCTGCAAAAATATTACATTCCATGTGGATGCAGTACCCATaGAGGTTTTCAGGGCAAGGC | + |
|
Preference number: 5 (lower is better) Translates to: YDHREVGPSVSAKILHSMWMQYP*RFSGQG Trigger: GCCTTGCCCTGAAAACCTCAATGGGTACTGCATCCA...CATGGAATGTAATATTTTTGCAGAGACGGATGGACCCACTTCACGGTGGTCATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
||
| CDS GCA 90 bp | TTTCCCAATAAACTCACATCATCTGTGTCTGTGCAGTGGCCGAGATaGCTTATGTCGATCTGTTCTTGCTTTATACACGACGCTTCTCGG | + |
|
Preference number: 5 (lower is better) Translates to: FPNKLTSSVSVQWPR*LMSICSCFIHDASR Trigger: CCGAGAAGCGTCGTGTATAAAGCAAGAACAGATCGACATAAGGCATCTCGGCCACTGCACAGACACAGATGATGTGAGTTTATTGGGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
||
| CDS GCA 90 bp | CCTTGTTATGCACATGACGATTGCTACTATAATGGCGATCTGTACTaGTCCAATAATGGCTGCGATAAGAACATGGGTGAGCTTCTGCCT | + |
|
Preference number: 5 (lower is better) Translates to: PCYAHDDCYYNGDLY*SNNGCDKNMGELLP Trigger: AGGCAGAAGCTCACCCATGTTCTTATCGCAGCCATTATTGGAGCAGTACAGATCGCCATTATAGTAGCAATCGTCATGTGCATAACAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
||
| CDS-3UTR CAA 90 bp | AAAAGACATAATAAATGTACATCACGTGGTCAGTGCGCATATAAAAGTCCGCGGATGTCTTTCTGGTGCTaGCAAGCAGCCCTCCTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: KRHNKCTSRGQCAYKSPRMSFWC*QAALLR Trigger: TCTCAGGAGGGCTGCTTGCAAGCACCAGAAAGACAT...CCGCGGACTTTTATATGCGCACTGACCACGTGATGTACATTTATTATGTCTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
||
| CDS-3UTR CAA 90 bp | TACTTTAGTTCATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGACTATGTCTTTCTGGTGCTaGCAAGCAGCCCTCCTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: YFSSCFVICCGHWGRSMTMSFWC*QAALLR Trigger: TCTCAGGAGGGCTGCTTGCAAGCACCAGAAAGACAT...AGTCATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCATGAACTAAAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
||
| CDS-3UTR CAA 90 bp | GTGGGTCCATCCGTCTCTGCAAAAATATTACATTCCATGGATAAAGAACAAGTCTGGATGCAGTACCCATaGAGGTTTTCAGGGCAAGGC | + |
|
Preference number: 5 (lower is better) Translates to: VGPSVSAKILHSMDKEQVWMQYP*RFSGQG Trigger: GCCTTGCCCTGAAAACCTCAATGGGTACTGCATCCA...GACTTGTTCTTTATCCATGGAATGTAATATTTTTGCAGAGACGGATGGACCCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
||
| CDS-3UTR CAA 90 bp | AAAAGACATAATAAATGTACATCACGTGGTCAGTGCGCATATAAAAGTCCGCGGTGCCTCCGCCCTCTATaGTTCTTGGGGCATTTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: KRHNKCTSRGQCAYKSPRCLRPL*FLGHFL Trigger: AAGGAAATGCCCCAAGAACAATAGAGGGCGGAGGCA...CCGCGGACTTTTATATGCGCACTGACCACGTGATGTACATTTATTATGTCTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
||
| CDS-3UTR CAA 90 bp | TACTTTAGTTCATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGACTTGCCTCCGCCCTCTATaGTTCTTGGGGCATTTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: YFSSCFVICCGHWGRSMTCLRPL*FLGHFL Trigger: AAGGAAATGCCCCAAGAACAATAGAGGGCGGAGGCA...AGTCATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCATGAACTAAAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
||
| CDS GCA 90 bp | CCCTCTATTGTTCTTGGGGCATTTCCTTGTTATGCACATGACGATTaGTACTATAATGGCGATCTGTACTGCTCCAATAATGGCTGCGAT | + |
|
Preference number: 5 (lower is better) Translates to: PSIVLGAFPCYAHDD*YYNGDLYCSNNGCD Trigger: ATCGCAGCCATTATTGGAGCAGTACAGATCGCCATTATAGTAGCAATCGTCATGTGCATAACAAGGAAATGCCCCAAGAACAATAGAGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
||
| CDS GCA 90 bp | TCTTGTTATGCACATGACGATTGCTACTATAATGGCGATCTGTACTaGTCCAATAATGGCTGCGATAAGAACATGGGTGAGCTTCTGCCT | + |
|
Preference number: 5 (lower is better) Translates to: SCYAHDDCYYNGDLY*SNNGCDKNMGELLP Trigger: AGGCAGAAGCTCACCCATGTTCTTATCGCAGCCATTATTGGAGCAGTACAGATCGCCATTATAGTAGCAATCGTCATGTGCATAACAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141720.2 |
||
| CDS CCA 90 bp | TCCAATAATGGCTGCGATAAGAACATGGGTGAGCTTCTGCCTACTTaGTACTACATAGAGAATACTAAAGTCCGTCTTCTCACAGTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: SNNGCDKNMGELLPT*YYIENTKVRLLTVL Trigger: CAGCACTGTGAGAAGACGGACTTTAGTATTCTCTATGTAGTACCAAGTAGGCAGAAGCTCACCCATGTTCTTATCGCAGCCATTATTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 ENSMUST00000141720.2 |
||
| CDS-3UTR CAA 90 bp | AAAAGACATAATAAATGTACATCACGTGGTCAGTGCGCATATAAAAGTCCGCGGTTTAATTCTGAGCAGTaGCTCTTGCCTCTGCCTCCC | + |
|
Preference number: 5 (lower is better) Translates to: KRHNKCTSRGQCAYKSPRFNSEQ*LLPLPP Trigger: GGGAGGCAGAGGCAAGAGCAACTGCTCAGAATTAAA...CCGCGGACTTTTATATGCGCACTGACCACGTGATGTACATTTATTATGTCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
||
| CDS-3UTR CAA 90 bp | CAGTCAAAAACTGTTGTAGCTAAATATTCTAAATACGAGCCAACAGTACTACACGGTAGGTGTCCCCGTTaGACCCACAGACAGGGATGT | + |
|
Preference number: 5 (lower is better) Translates to: QSKTVVAKYSKYEPTVLHGRCPR*THRQGC Trigger: ACATCCCTGTCTGTGGGTCAAACGGGGACACCTACC...GTGTAGTACTGTTGGCTCGTATTTAGAATATTTAGCTACAACAGTTTTTGACTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
||
| CDS-3UTR CAA 90 bp | TTTAGTTCATGCTTTGTCATTTGCTGTGGTCACTGGGGAAGAAGTATGACTTTATTTAATTCTGAGCAGTaGCTCTTGCCTCTGCCTCCC | + |
|
Preference number: 5 (lower is better) Translates to: FSSCFVICCGHWGRSMTLFNSEQ*LLPLPP Trigger: GGGAGGCAGAGGCAAGAGCAACTGCTCAGAATTAAA...TAAAGTCATACTTCTTCCCCAGTGACCACAGCAAATGACAAAGCATGAACTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
||
| CDS-3UTR CAA 90 bp | CAGTCAAAAACTGTTGTAGCTAAATATTCTAAATACGAGCCAACAGTACTACACCACTCGGCCTTGTACTaGCACGGTCCACACTTGGAA | + |
|
Preference number: 5 (lower is better) Translates to: QSKTVVAKYSKYEPTVLHHSALY*HGPHLE Trigger: TTCCAAGTGTGGACCGTGCAAGTACAAGGCCGAGTG...GTGTAGTACTGTTGGCTCGTATTTAGAATATTTAGCTACAACAGTTTTTGACTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
||
| CDS-3UTR CAA 90 bp | ACAAGTCTTAGTAGTATCACCATGTGTTACAAATTCGTGAAGCCAATTTCTGTACACTCGGCCTTGTACTaGCACGGTCCACACTTGGAA | + |
|
Preference number: 5 (lower is better) Translates to: TSLSSITMCYKFVKPISVHSALY*HGPHLE Trigger: TTCCAAGTGTGGACCGTGCAAGTACAAGGCCGAGTG...TACAGAAATTGGCTTCACGAATTTGTAACACATGGTGATACTACTAAGACTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
||
| CDS-3UTR CAA 90 bp | AACGCCTCGATACATTCTACTCACAGTTCAGACTTTGAAACACCAACGATCTATCCATCTCCATCTTCTTaGCAGACACCTCCATATTTA | + |
|
Preference number: 5 (lower is better) Translates to: NASIHSTHSSDFETPTIYPSPSS*QTPPYL Trigger: TAAATATGGAGGTGTCTGCAAAGAAGATGGAGATGG...ATAGATCGTTGGTGTTTCAAAGTCTGAACTGTGAGTAGAATGTATCGAGGCGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030032.13 |
||
| CDS-3UTR CAA 90 bp | GTGAAGTGGGTCCATCCGTCTCTGCAAAAATATTACATTCCATGGATAAAGAACCCATCTCCATCTTCTTaGCAGACACCTCCATATTTA | + |
|
Preference number: 5 (lower is better) Translates to: VKWVHPSLQKYYIPWIKNPSPSS*QTPPYL Trigger: TAAATATGGAGGTGTCTGCAAAGAAGATGGAGATGG...GTTCTTTATCCATGGAATGTAATATTTTTGCAGAGACGGATGGACCCACTTCAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030032.13 ENSMUST00000130834.8 |
||
| CDS TCA 90 bp | CTTTGCAGACACCTCCATATTTACAAGATGATTCATCACACACTCTaGTGTCAGATTCTCTCAGATTTAATTCTGAGCAGTTGCTCTTGC | + |
|
Preference number: 5 (lower is better) Translates to: LCRHLHIYKMIHHTL*CQILSDLILSSCSC Trigger: GCAAGAGCAACTGCTCAGAATTAAATCTGAGAGAATCTGACATCAGAGTGTGTGATGAATCATCTTGTAAATATGGAGGTGTCTGCAAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
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| CDS-3UTR CAA 90 bp | AGTTTAGCTGATACTGTAGGTTTTATTGCAATCTGCTCATTAAACGCCCTATCTAGACAGGGATGTAATTaGTATGGCACTGAAACTGGC | + |
|
Preference number: 5 (lower is better) Translates to: SLADTVGFIAICSLNALSRQGCN*YGTETG Trigger: GCCAGTTTCAGTGCCATACAAATTACATCCCTGTCT...AGATAGGGCGTTTAATGAGCAGATTGCAATAAAACCTACAGTATCAGCTAAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030032.13 |
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| CDS GCA 72 bp | CAGATTCTCTCAGATTTAATTCTGAGCAGTTGCTCTTaGCTCTGCCTCCCGGACAGTCCCCGCCGCCGCCCG | + |
|
Preference number: 6 (lower is better) Translates to: QILSDLILSSCS*LCLPDSPRRRP Trigger: CGGGCGGCGGCGGGGACTGTCCGGGAGGCAGAGGCAAGAGCAACTGCTCAGAATTAAATCTGAGAGAATCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
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| CDS CAA 90 bp | TCACACACTCTGATGTCAGATTCTCTCAGATTTAATTCTGAGCAGTaGCTCTTGCCTCTGCCTCCCGGACAGTCCCCGCCGCCGCCCGCG | + |
|
Preference number: 6 (lower is better) Translates to: SHTLMSDSLRFNSEQ*LLPLPPGQSPPPPA Trigger: CGCGGGCGGCGGCGGGGACTGTCCGGGAGGCAGAGGCAAGAGCAACTGCTCAGAATTAAATCTGAGAGAATCTGACATCAGAGTGTGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
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| CDS CAA 72 bp | TCAGATTCTCTCAGATTTAATTCTGAGCAGTTGCTCTaGCCTCTGCCTCCCGGACAGTCCCCGCCGCCGCCC | + |
|
Preference number: 6 (lower is better) Translates to: SDSLRFNSEQLL*PLPPGQSPPPP Trigger: GGGCGGCGGCGGGGACTGTCCGGGAGGCAGAGGCAAGAGCAACTGCTCAGAATTAAATCTGAGAGAATCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
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| CDS GCA 72 bp | CGTTCTCCGCATCCTCGTCACACTCGGCCTTGTACTTaGACGGTCCACACTTGGAATGTTTCCTGTGAGCCC | + |
|
Preference number: 6 (lower is better) Translates to: RSPHPRHTRPCT*TVHTWNVSCEP Trigger: GGGCTCACAGGAAACATTCCAAGTGTGGACCGTGCAAGTACAAGGCCGAGTGTGACGAGGATGCGGAGAACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
||
| CDS CCA 72 bp | CGTCACACTCGGCCTTGTACTTGCACGGTCCACACTTaGAATGTTTCCTGTGAGCCCCTGCTCCTGAGCCTT | + |
|
Preference number: 6 (lower is better) Translates to: RHTRPCTCTVHT*NVSCEPLLLSL Trigger: AAGGCTCAGGAGCAGGGGCTCACAGGAAACATTCCAAGTGTGGACCGTGCAAGTACAAGGCCGAGTGTGACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
||
| CDS CAA 72 bp | GGTCCACGCGCCACCACGGTTATGTCTTTCTGGTGCTaGCAAGCAGCCCTCCTGAGAAAGCACTCATTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: GPRATTVMSFWC*QAALLRKHSFW Trigger: CCAGAATGAGTGCTTTCTCAGGAGGGCTGCTTGCAAGCACCAGAAAGACATAACCGTGGTGGCGCGTGGACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
||
| CDS GCA 72 bp | CAAGGTCCACGCGCCACCACGGTTATGTCTTTCTGGTaGTTGCAAGCAGCCCTCCTGAGAAAGCACTCATTC | + |
|
Preference number: 6 (lower is better) Translates to: QGPRATTVMSFW*LQAALLRKHSF Trigger: GAATGAGTGCTTTCTCAGGAGGGCTGCTTGCAAGCACCAGAAAGACATAACCGTGGTGGCGCGTGGACCTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
||
| CDS CAA 72 bp | CACCCAACGTTCTCCGCATCCTCGTCACACTCGGCCTaGTACTTGCACGGTCCACACTTGGAATGTTTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: HPTFSASSSHSA*YLHGPHLECFL Trigger: CAGGAAACATTCCAAGTGTGGACCGTGCAAGTACAAGGCCGAGTGTGACGAGGATGCGGAGAACGTTGGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
||
| CDS GCA 72 bp | GTGCAGTGGCCGAGATGCCTTATGTCGATCTGTTCTTaGTTTATACACGACGCTTCTCGGACGAAACAGGGA | + |
|
Preference number: 6 (lower is better) Translates to: VQWPRCLMSICS*FIHDASRTKQG Trigger: TCCCTGTTTCGTCCGAGAAGCGTCGTGTATAAAGCAAGAACAGATCGACATAAGGCATCTCGGCCACTGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
||
| CDS CAA 72 bp | TGTGCAGTGGCCGAGATGCCTTATGTCGATCTGTTCTaGCTTTATACACGACGCTTCTCGGACGAAACAGGG | + |
|
Preference number: 6 (lower is better) Translates to: CAVAEMPYVDLF*LYTRRFSDETG Trigger: CCCTGTTTCGTCCGAGAAGCGTCGTGTATAAAGCAAGAACAGATCGACATAAGGCATCTCGGCCACTGCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
||
| CDS CAA 72 bp | CCCAGGTTCTGCTTCTGCCTCCGCCCTCTATTGTTCTaGGGGCATTTCCTTGTTATGCACATGACGATTGCT | + |
|
Preference number: 6 (lower is better) Translates to: PRFCFCLRPLLF*GHFLVMHMTIA Trigger: AGCAATCGTCATGTGCATAACAAGGAAATGCCCCAAGAACAATAGAGGGCGGAGGCAGAAGCAGAACCTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
||
| CDS GCA 72 bp | GTGGCTTCCGATATAAACATCTTCCCTTTCATCACCTaGATCTTTCACATCTGGCCGATACTGCAGCCCGTC | + |
|
Preference number: 6 (lower is better) Translates to: VASDINIFPFIT*IFHIWPILQPV Trigger: GACGGGCTGCAGTATCGGCCAGATGTGAAAGATGCAGGTGATGAAAGGGAAGATGTTTATATCGGAAGCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 ENSMUST00000141720.2 |
||
| CDS CCA 72 bp | AACATCTTCCCTTTCATCACCTGCATCTTTCACATCTaGCCGATACTGCAGCCCGTCGTCCTTCTTTCCCAA | + |
|
Preference number: 6 (lower is better) Translates to: NIFPFITCIFHI*PILQPVVLLSQ Trigger: TTGGGAAAGAAGGACGACGGGCTGCAGTATCGGCCAGATGTGAAAGATGCAGGTGATGAAAGGGAAGATGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 ENSMUST00000141720.2 |
||
| CDS GCA 72 bp | CTTTCATCACCTGCATCTTTCACATCTGGCCGATACTaGAGCCCGTCGTCCTTCTTTCCCAATAAACTCACA | + |
|
Preference number: 6 (lower is better) Translates to: LSSPASFTSGRY*SPSSFFPNKLT Trigger: TGTGAGTTTATTGGGAAAGAAGGACGACGGGCTGCAGTATCGGCCAGATGTGAAAGATGCAGGTGATGAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 ENSMUST00000141720.2 |
||
| CDS CAA 72 bp | AGGTGTCCCCGTTTGACCCACAGACAGGGATGTAATTaGTATGGCACTGAAACTGGCATGCGCATTTCAAAC | + |
|
Preference number: 6 (lower is better) Translates to: RCPRLTHRQGCN*YGTETGMRISN Trigger: GTTTGAAATGCGCATGCCAGTTTCAGTGCCATACAAATTACATCCCTGTCTGTGGGTCAAACGGGGACACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
||
| CDS CAA 90 bp | ATCTGTGTCTGTGCAGTGGCCGAGATGCCTTATGTCGATCTGTTCTaGCTTTATACACGACGCTTCTCGGACGAAACAGGGATTGTTATA | + |
|
Preference number: 6 (lower is better) Translates to: ICVCAVAEMPYVDLF*LYTRRFSDETGIVI Trigger: TATAACAATCCCTGTTTCGTCCGAGAAGCGTCGTGTATAAAGCAAGAACAGATCGACATAAGGCATCTCGGCCACTGCACAGACACAGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
||
| CDS GCA 72 bp | AAACTCACATCATCTGTGTCTGTGCAGTGGCCGAGATaGCTTATGTCGATCTGTTCTTGCTTTATACACGAC | + |
|
Preference number: 6 (lower is better) Translates to: KLTSSVSVQWPR*LMSICSCFIHD Trigger: GTCGTGTATAAAGCAAGAACAGATCGACATAAGGCATCTCGGCCACTGCACAGACACAGATGATGTGAGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 ENSMUST00000141720.2 |
||
| CDS GCA 72 bp | CCTTCTTTCCCAATAAACTCACATCATCTGTGTCTGTaGAGTGGCCGAGATGCCTTATGTCGATCTGTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: PSFPINSHHLCL*SGRDALCRSVL Trigger: AAGAACAGATCGACATAAGGCATCTCGGCCACTGCACAGACACAGATGATGTGAGTTTATTGGGAAAGAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 ENSMUST00000141720.2 |
||
| CDS GCA 72 bp | GCACATGACGATTGCTACTATAATGGCGATCTGTACTaGTCCAATAATGGCTGCGATAAGAACATGGGTGAG | + |
|
Preference number: 6 (lower is better) Translates to: AHDDCYYNGDLY*SNNGCDKNMGE Trigger: CTCACCCATGTTCTTATCGCAGCCATTATTGGAGCAGTACAGATCGCCATTATAGTAGCAATCGTCATGTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 ENSMUST00000141720.2 |
||
| CDS CCA 72 bp | GGCTGCGATAAGAACATGGGTGAGCTTCTGCCTACTTaGTACTACATAGAGAATACTAAAGTCCGTCTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: GCDKNMGELLPT*YYIENTKVRLL Trigger: GAGAAGACGGACTTTAGTATTCTCTATGTAGTACCAAGTAGGCAGAAGCTCACCCATGTTCTTATCGCAGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 ENSMUST00000141720.2 |
||
| CDS CCA 72 bp | TTTCCCAATAAACTCACATCATCTGTGTCTGTGCAGTaGCCGAGATGCCTTATGTCGATCTGTTCTTGCTTT | + |
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Preference number: 6 (lower is better) Translates to: FPNKLTSSVSVQ*PRCLMSICSCF Trigger: AAAGCAAGAACAGATCGACATAAGGCATCTCGGCCACTGCACAGACACAGATGATGTGAGTTTATTGGGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 ENSMUST00000141720.2 |
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| CDS GCA 72 bp | GTTCTTGGGGCATTTCCTTGTTATGCACATGACGATTaGTACTATAATGGCGATCTGTACTGCTCCAATAAT | + |
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Preference number: 6 (lower is better) Translates to: VLGAFPCYAHDD*YYNGDLYCSNN Trigger: ATTATTGGAGCAGTACAGATCGCCATTATAGTAGCAATCGTCATGTGCATAACAAGGAAATGCCCCAAGAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
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| CDS GCA 72 bp | AGGCAGATCATCTGTTCTTGTTATGCACATGACGATTaGTACTATAATGGCGATCTGTACTGCTCCAATAAT | + |
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Preference number: 6 (lower is better) Translates to: RQIICSCYAHDD*YYNGDLYCSNN Trigger: ATTATTGGAGCAGTACAGATCGCCATTATAGTAGCAATCGTCATGTGCATAACAAGAACAGATGATCTGCCT 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141720.2 |
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| CDS CAA 72 bp | AACTGGCATGCGCATTTCAAACCATCTCCATCTTCTTaGCAGACACCTCCATATTTACAAGATGATTCATCA | + |
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Preference number: 6 (lower is better) Translates to: NWHAHFKPSPSS*QTPPYLQDDSS Trigger: TGATGAATCATCTTGTAAATATGGAGGTGTCTGCAAAGAAGATGGAGATGGTTTGAAATGCGCATGCCAGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
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| CDS TCA 72 bp | CACCTCCATATTTACAAGATGATTCATCACACACTCTaGTGTCAGATTCTCTCAGATTTAATTCTGAGCAGT | + |
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Preference number: 6 (lower is better) Translates to: HLHIYKMIHHTL*CQILSDLILSS Trigger: ACTGCTCAGAATTAAATCTGAGAGAATCTGACATCAGAGTGTGTGATGAATCATCTTGTAAATATGGAGGTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030032.13 ENSMUST00000123476.8 ENSMUST00000130834.8 |
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