Pregenerated sensors for TMED7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033184Ensembl transcript IDs: ENSMUST00000036030.14, ENSMUST00000151189.2
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CGCCCCCTTTGCCTCAGGTTGGTCCTGCTCTCCTGTTGGTGGCTCTaGTCCACTGCTCTGCTCCACAAAACCACGCAAGCAGGCTTCCTC | + |
|
Preference number: 1 (lower is better) Translates to: RPLCLRLVLLSCWWL*STALLHKTTQAGFL Trigger: GAGGAAGCCTGCTTGCGTGGTTTTGTGGAGCAGAGCAGTGGATCAGAGCCACCAACAGGAGAGCAGGACCAACCTGAGGCAAAGGGGGCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR CCA 90 bp | TCTTCTTCATCTTGCTCCTCAGGCCCCGCCCCCTTTGCCTCAGGTTaGTCCTGCTCTCCTGTTGGTGGCTCTGATCCACTGCTCTGCTCC | + |
|
Preference number: 1 (lower is better) Translates to: SSSSCSSGPAPFASG*SCSPVGGSDPLLCS Trigger: GGAGCAGAGCAGTGGATCAGAGCCACCAACAGGAGAGCAGGACCAACCTGAGGCAAAGGGGGCGGGGCCTGAGGAGCAAGATGAAGAAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR TCA 90 bp | GAGTCCGTTCCCGGGGAAGAGGGCTGTTCAGGGGCCGCATGGGTATaGCGGAGTTGTACTTGTGCTGCCTGCTCACAGAATTCATCAGGG | + |
|
Preference number: 1 (lower is better) Translates to: ESVPGEEGCSGAAWV*RSCTCAACSQNSSG Trigger: CCCTGATGAATTCTGTGAGCAGGCAGCACAAGTACAACTCCGTCATACCCATGCGGCCCCTGAACAGCCCTCTTCCCCGGGAACGGACTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR TCA 90 bp | TCTCCACTTGTGTGGAAAAGCCTTGACTTTCTTCCTCTAAGGCATTaGTGGTTTGCAGCGCCAAGGGAGTCCGTTCCCGGGGAAGAGGGC | + |
|
Preference number: 1 (lower is better) Translates to: SPLVWKSLDFLPLRH*WFAAPRESVPGEEG Trigger: GCCCTCTTCCCCGGGAACGGACTCCCTTGGCGCTGCAAACCATCAATGCCTTAGAGGAAGAAAGTCAAGGCTTTTCCACACAAGTGGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR GCA 90 bp | GGAGCCGGCCCGGTGTGTGCTCGGTTTCAGGCAATGAACTGTTTCTaGGACACACTTCGTGTCTCTTTCCATATACTTTGTTGCCTCTCA | + |
|
Preference number: 1 (lower is better) Translates to: GAGPVCARFQAMNCF*DTLRVSFHILCCLS Trigger: TGAGAGGCAACAAAGTATATGGAAAGAGACACGAAGTGTGTCGCAGAAACAGTTCATTGCCTGAAACCGAGCACACACCGGGCCGGCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR CCA 90 bp | TGCTCTGCTCCACAAAACCACGCAAGCAGGCTTCCTCAGAATTCTTaGAGTCTGACTCATGGCCGTCTTGATCGGCATCCACACTGTCTT | + |
|
Preference number: 1 (lower is better) Translates to: CSAPQNHASRLPQNS*SLTHGRLDRHPHCL Trigger: AAGACAGTGTGGATGCCGATCAAGACGGCCATGAGTCAGACTCCAAGAATTCTGAGGAAGCCTGCTTGCGTGGTTTTGTGGAGCAGAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR TCA 90 bp | TTAGGAAGTTCTCAGTCAGTAACAAGATGGTCCAGGCCGACCCATTaGCCGCATCGTCTAGATTCTGCAAATGCAGTCTTCCGCACGGCA | + |
|
Preference number: 1 (lower is better) Translates to: LGSSQSVTRWSRPTH*PHRLDSANAVFRTA Trigger: TGCCGTGCGGAAGACTGCATTTGCAGAATCTAGACGATGCGGTCAATGGGTCGGCCTGGACCATCTTGTTACTGACTGAGAACTTCCTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR GCA 90 bp | GAAGATGGATCATTTTGTTTACAAAACAGGAGCCGGCCCGGTGTGTaGTCGGTTTCAGGCAATGAACTGTTTCTGCGACACACTTCGTGT | + |
|
Preference number: 1 (lower is better) Translates to: EDGSFCLQNRSRPGV*SVSGNELFLRHTSC Trigger: ACACGAAGTGTGTCGCAGAAACAGTTCATTGCCTGAAACCGAGCACACACCGGGCCGGCTCCTGTTTTGTAAACAAAATGATCCATCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR TCA 90 bp | TTTACAAAACAGGAGCCGGCCCGGTGTGTGCTCGGTTTCAGGCAATaGACTGTTTCTGCGACACACTTCGTGTCTCTTTCCATATACTTT | + |
|
Preference number: 1 (lower is better) Translates to: FTKQEPARCVLGFRQ*TVSATHFVSLSIYF Trigger: AAAGTATATGGAAAGAGACACGAAGTGTGTCGCAGAAACAGTTCATTGCCTGAAACCGAGCACACACCGGGCCGGCTCCTGTTTTGTAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR TCA 90 bp | AATACAGACTCCCGGAAAATTCTCTCCACTTGTGTGGAAAAGCCTTaGCTTTCTTCCTCTAAGGCATTGATGGTTTGCAGCGCCAAGGGA | + |
|
Preference number: 1 (lower is better) Translates to: NTDSRKILSTCVEKP*LSSSKALMVCSAKG Trigger: TCCCTTGGCGCTGCAAACCATCAATGCCTTAGAGGAAGAAAGTCAAGGCTTTTCCACACAAGTGGAGAGAATTTTCCGGGAGTCTGTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR GCA 90 bp | AACTGTTTCTGCGACACACTTCGTGTCTCTTTCCATATACTTTGTTaGCTCTCAAATACAGACTCCCGGAAAATTCTCTCCACTTGTGTG | + |
|
Preference number: 1 (lower is better) Translates to: NCFCDTLRVSFHILC*LSNTDSRKILSTCV Trigger: CACACAAGTGGAGAGAATTTTCCGGGAGTCTGTATTTGAGAGGCAACAAAGTATATGGAAAGAGACACGAAGTGTGTCGCAGAAACAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR-3UTR GCA 90 bp | ATGGTTTGCAGCGCCAAGGGAGTCCGTTCCCGGGGAAGAGGGCTGTTCAGGGGCAACTCTTCTTCATCTTaGTCCTCAGGCCCCGCCCCC | + |
|
Preference number: 2 (lower is better) Translates to: MVCSAKGVRSRGRGLFRGNSSSS*SSGPAP Trigger: GGGGGCGGGGCCTGAGGAGCAAGATGAAGAAGAGTT...GCCCCTGAACAGCCCTCTTCCCCGGGAACGGACTCCCTTGGCGCTGCAAACCAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR-3UTR CCA 90 bp | TTTGCAGCGCCAAGGGAGTCCGTTCCCGGGGAAGAGGGCTGTTCAGGGGCCGCATTTTGCAGTAGATCCTaGACTCTGAGGGCCTCGTCG | + |
|
Preference number: 2 (lower is better) Translates to: FAAPRESVPGEEGCSGAAFCSRS*TLRASS Trigger: CGACGAGGCCCTCAGAGTCCAGGATCTACTGCAAAA...TGCGGCCCCTGAACAGCCCTCTTCCCCGGGAACGGACTCCCTTGGCGCTGCAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR-3UTR GCA 90 bp | ACCAGGTGTCTCTTAGGAAGTTCTCAGTCAGTAACAAGATGGTCCAGGCCGACCAGGCCCCGCCCCCTTTaGCTCAGGTTGGTCCTGCTC | + |
|
Preference number: 2 (lower is better) Translates to: TRCLLGSSQSVTRWSRPTRPRPL*LRLVLL Trigger: GAGCAGGACCAACCTGAGGCAAAGGGGGCGGGGCCT...GGTCGGCCTGGACCATCTTGTTACTGACTGAGAACTTCCTAAGAGACACCTGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR-3UTR GCA 90 bp | GTTTGCAGCGCCAAGGGAGTCCGTTCCCGGGGAAGAGGGCTGTTCAGGGGCCGCATACCAAAGTCGTTTTaGAGTAGATCCTGGACTCTG | + |
|
Preference number: 2 (lower is better) Translates to: VCSAKGVRSRGRGLFRGRIPKSF*SRSWTL Trigger: CAGAGTCCAGGATCTACTGCAAAACGACTTTGGTAT...GCGGCCCCTGAACAGCCCTCTTCCCCGGGAACGGACTCCCTTGGCGCTGCAAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR-3UTR TCA 90 bp | ACCAGGTGTCTCTTAGGAAGTTCTCAGTCAGTAACAAGATGGTCCAGGCCGACCACTTCCCAACACCCATaGCAGAGTGGTGGGGCAGAC | + |
|
Preference number: 2 (lower is better) Translates to: TRCLLGSSQSVTRWSRPTTSQHP*QSGGAD Trigger: GTCTGCCCCACCACTCTGTCATGGGTGTTGGGAAGT...GGTCGGCCTGGACCATCTTGTTACTGACTGAGAACTTCCTAAGAGACACCTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR-3UTR TCA 90 bp | TGGATCATTTTGTTTACAAAACAGGAGCCGGCCCGGTGTGTGCTCGGTTTCAGGGGGGCCGCATGGGTATaGCGGAGTTGTACTTGTGCT | + |
|
Preference number: 2 (lower is better) Translates to: WIILFTKQEPARCVLGFRGAAWV*RSCTCA Trigger: AGCACAAGTACAACTCCGTCATACCCATGCGGCCCC...CCTGAAACCGAGCACACACCGGGCCGGCTCCTGTTTTGTAAACAAAATGATCCA 54% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR-3UTR GCA 90 bp | AGTATCACAAATTTGAGGAACTCTTCTTCATCTTGCTCCTCAGGCCCCGCCCCCGCCTCAGGTTGGTCCTaGTCTCCTGTTGGTGGCTCT | + |
|
Preference number: 2 (lower is better) Translates to: SITNLRNSSSSCSSGPAPASGWS*SPVGGS Trigger: AGAGCCACCAACAGGAGAGCAGGACCAACCTGAGGC...GGGGGCGGGGCCTGAGGAGCAAGATGAAGAAGAGTTCCTCAAATTTGTGATACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR-3UTR CCA 90 bp | TCTCTTAGGAAGTTCTCAGTCAGTAACAAGATGGTCCAGGCCGACCCATTGACCACACCCATGACAGAGTaGTGGGGCAGACGAGGGAGC | + |
|
Preference number: 2 (lower is better) Translates to: SLRKFSVSNKMVQADPLTTPMTE*WGRRGS Trigger: GCTCCCTCGTCTGCCCCACCACTCTGTCATGGGTGT...GGTCAATGGGTCGGCCTGGACCATCTTGTTACTGACTGAGAACTTCCTAAGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR CAA 90 bp | CTTAGGAAGTTCTCAGTCAGTAACAAGATGGTCCAGGCCGACCCATaGACCGCATCGTCTAGATTCTGCAAATGCAGTCTTCCGCACGGC | + |
|
Preference number: 2 (lower is better) Translates to: LRKFSVSNKMVQADP*TASSRFCKCSLPHG Trigger: GCCGTGCGGAAGACTGCATTTGCAGAATCTAGACGATGCGGTCAATGGGTCGGCCTGGACCATCTTGTTACTGACTGAGAACTTCCTAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR-3UTR GCA 90 bp | TGGATCATTTTGTTTACAAAACAGGAGCCGGCCCGGTGTGTGCTCGGTTTCAGGGTGGCTCTGATCCACTaGTCTGCTCCACAAAACCAC | + |
|
Preference number: 2 (lower is better) Translates to: WIILFTKQEPARCVLGFRVALIH*SAPQNH Trigger: GTGGTTTTGTGGAGCAGAGCAGTGGATCAGAGCCAC...CCTGAAACCGAGCACACACCGGGCCGGCTCCTGTTTTGTAAACAAAATGATCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR CAA 90 bp | ATCTTCTGCATGAAGTATCACAAATTTGAGGAACTCTTCTTCATCTaGCTCCTCAGGCCCCGCCCCCTTTGCCTCAGGTTGGTCCTGCTC | + |
|
Preference number: 2 (lower is better) Translates to: IFCMKYHKFEELFFI*LLRPRPLCLRLVLL Trigger: GAGCAGGACCAACCTGAGGCAAAGGGGGCGGGGCCTGAGGAGCAAGATGAAGAAGAGTTCCTCAAATTTGTGATACTTCATGCAGAAGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR-3UTR CCA 90 bp | TGGATCATTTTGTTTACAAAACAGGAGCCGGCCCGGTGTGTGCTCGGTTTCAGGCTTCCTCAGAATTCTTaGAGTCTGACTCATGGCCGT | + |
|
Preference number: 2 (lower is better) Translates to: WIILFTKQEPARCVLGFRLPQNS*SLTHGR Trigger: ACGGCCATGAGTCAGACTCCAAGAATTCTGAGGAAG...CCTGAAACCGAGCACACACCGGGCCGGCTCCTGTTTTGTAAACAAAATGATCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR CAA 90 bp | AATGAACTGTTTCTGCGACACACTTCGTGTCTCTTTCCATATACTTaGTTGCCTCTCAAATACAGACTCCCGGAAAATTCTCTCCACTTG | + |
|
Preference number: 2 (lower is better) Translates to: NELFLRHTSCLFPYT*LPLKYRLPENSLHL Trigger: CAAGTGGAGAGAATTTTCCGGGAGTCTGTATTTGAGAGGCAACAAAGTATATGGAAAGAGACACGAAGTGTGTCGCAGAAACAGTTCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR-3UTR CAA 90 bp | ATGGTTTGCAGCGCCAAGGGAGTCCGTTCCCGGGGAAGAGGGCTGTTCAGGGGCGGTCCTGCTCTCCTGTaGGTGGCTCTGATCCACTGC | + |
|
Preference number: 3 (lower is better) Translates to: MVCSAKGVRSRGRGLFRGGPALL*VALIHC Trigger: GCAGTGGATCAGAGCCACCAACAGGAGAGCAGGACC...GCCCCTGAACAGCCCTCTTCCCCGGGAACGGACTCCCTTGGCGCTGCAAACCAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR-3UTR CAA 90 bp | TGGTTTGCAGCGCCAAGGGAGTCCGTTCCCGGGGAAGAGGGCTGTTCAGGGGCCGCTTCCTCAGAATTCTaGGAGTCTGACTCATGGCCG | + |
|
Preference number: 3 (lower is better) Translates to: WFAAPRESVPGEEGCSGAASSEF*ESDSWP Trigger: CGGCCATGAGTCAGACTCCAAGAATTCTGAGGAAGC...GGCCCCTGAACAGCCCTCTTCCCCGGGAACGGACTCCCTTGGCGCTGCAAACCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR GCA 72 bp | CTCTTCTTCATCTTGCTCCTCAGGCCCCGCCCCCTTTaGCTCAGGTTGGTCCTGCTCTCCTGTTGGTGGCTC | + |
|
Preference number: 3 (lower is better) Translates to: LFFILLLRPRPL*LRLVLLSCWWL Trigger: GAGCCACCAACAGGAGAGCAGGACCAACCTGAGGCAAAGGGGGCGGGGCCTGAGGAGCAAGATGAAGAAGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR TCA 72 bp | CCCGGGGAAGAGGGCTGTTCAGGGGCCGCATGGGTATaGCGGAGTTGTACTTGTGCTGCCTGCTCACAGAAT | + |
|
Preference number: 3 (lower is better) Translates to: PGEEGCSGAAWV*RSCTCAACSQN Trigger: ATTCTGTGAGCAGGCAGCACAAGTACAACTCCGTCATACCCATGCGGCCCCTGAACAGCCCTCTTCCCCGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR TCA 72 bp | TGCCTCAGGTTGGTCCTGCTCTCCTGTTGGTGGCTCTaGTCCACTGCTCTGCTCCACAAAACCACGCAAGCA | + |
|
Preference number: 3 (lower is better) Translates to: CLRLVLLSCWWL*STALLHKTTQA Trigger: TGCTTGCGTGGTTTTGTGGAGCAGAGCAGTGGATCAGAGCCACCAACAGGAGAGCAGGACCAACCTGAGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR GCA 72 bp | GTTGGTCCTGCTCTCCTGTTGGTGGCTCTGATCCACTaGTCTGCTCCACAAAACCACGCAAGCAGGCTTCCT | + |
|
Preference number: 3 (lower is better) Translates to: VGPALLLVALIH*SAPQNHASRLP Trigger: AGGAAGCCTGCTTGCGTGGTTTTGTGGAGCAGAGCAGTGGATCAGAGCCACCAACAGGAGAGCAGGACCAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR CCA 72 bp | CCCGGCCTGATACCAAAGTCGTTTTGCAGTAGATCCTaGACTCTGAGGGCCTCGTCGGTGTCATCTTCTGCA | + |
|
Preference number: 3 (lower is better) Translates to: PGLIPKSFCSRS*TLRASSVSSSA Trigger: TGCAGAAGATGACACCGACGAGGCCCTCAGAGTCCAGGATCTACTGCAAAACGACTTTGGTATCAGGCCGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR TCA 72 bp | GTGTGGAAAAGCCTTGACTTTCTTCCTCTAAGGCATTaGTGGTTTGCAGCGCCAAGGGAGTCCGTTCCCGGG | + |
|
Preference number: 3 (lower is better) Translates to: VWKSLDFLPLRH*WFAAPRESVPG Trigger: CCCGGGAACGGACTCCCTTGGCGCTGCAAACCATCAATGCCTTAGAGGAAGAAAGTCAAGGCTTTTCCACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR CCA 72 bp | CCACAAAACCACGCAAGCAGGCTTCCTCAGAATTCTTaGAGTCTGACTCATGGCCGTCTTGATCGGCATCCA | + |
|
Preference number: 3 (lower is better) Translates to: PQNHASRLPQNS*SLTHGRLDRHP Trigger: TGGATGCCGATCAAGACGGCCATGAGTCAGACTCCAAGAATTCTGAGGAAGCCTGCTTGCGTGGTTTTGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR TCA 72 bp | TCTCAGTCAGTAACAAGATGGTCCAGGCCGACCCATTaGCCGCATCGTCTAGATTCTGCAAATGCAGTCTTC | + |
|
Preference number: 3 (lower is better) Translates to: SQSVTRWSRPTH*PHRLDSANAVF Trigger: GAAGACTGCATTTGCAGAATCTAGACGATGCGGTCAATGGGTCGGCCTGGACCATCTTGTTACTGACTGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR GCA 72 bp | TCATTTTGTTTACAAAACAGGAGCCGGCCCGGTGTGTaGTCGGTTTCAGGCAATGAACTGTTTCTGCGACAC | + |
|
Preference number: 3 (lower is better) Translates to: SFCLQNRSRPGV*SVSGNELFLRH Trigger: GTGTCGCAGAAACAGTTCATTGCCTGAAACCGAGCACACACCGGGCCGGCTCCTGTTTTGTAAACAAAATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR TCA 72 bp | CGTCGGTGTCATCTTCTGCATGAAGTATCACAAATTTaGGGAACTCTTCTTCATCTTGCTCCTCAGGCCCCG | + |
|
Preference number: 3 (lower is better) Translates to: RRCHLLHEVSQI*GTLLHLAPQAP Trigger: CGGGGCCTGAGGAGCAAGATGAAGAAGAGTTCCTCAAATTTGTGATACTTCATGCAGAAGATGACACCGACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR GCA 72 bp | CCGGTGTGTGCTCGGTTTCAGGCAATGAACTGTTTCTaGGACACACTTCGTGTCTCTTTCCATATACTTTGT | + |
|
Preference number: 3 (lower is better) Translates to: PVCARFQAMNCF*DTLRVSFHILC Trigger: ACAAAGTATATGGAAAGAGACACGAAGTGTGTCGCAGAAACAGTTCATTGCCTGAAACCGAGCACACACCGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR TCA 72 bp | TCCCGGAAAATTCTCTCCACTTGTGTGGAAAAGCCTTaGCTTTCTTCCTCTAAGGCATTGATGGTTTGCAGC | + |
|
Preference number: 3 (lower is better) Translates to: SRKILSTCVEKP*LSSSKALMVCS Trigger: GCTGCAAACCATCAATGCCTTAGAGGAAGAAAGTCAAGGCTTTTCCACACAAGTGGAGAGAATTTTCCGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR GCA 72 bp | TGCGACACACTTCGTGTCTCTTTCCATATACTTTGTTaGCTCTCAAATACAGACTCCCGGAAAATTCTCTCC | + |
|
Preference number: 3 (lower is better) Translates to: CDTLRVSFHILC*LSNTDSRKILS Trigger: GGAGAGAATTTTCCGGGAGTCTGTATTTGAGAGGCAACAAAGTATATGGAAAGAGACACGAAGTGTGTCGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| CDS-3UTR GCA 90 bp | TCCTCAGGCCCCGCCCCCTTTGCCTCAGGTTGGTCCTGCTCTCCTGTTGGTGGCTGTATTCAGATCCTCTaGTCGGCTTCGGCCTTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: SSGPAPFASGWSCSPVGGCIQIL*SASALS Trigger: GCTCAAGGCCGAAGCCGAGCAGAGGATCTGAATACA...GCCACCAACAGGAGAGCAGGACCAACCTGAGGCAAAGGGGGCGGGGCCTGAGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR CAA 72 bp | CCGCCCCCTTTGCCTCAGGTTGGTCCTGCTCTCCTGTaGGTGGCTCTGATCCACTGCTCTGCTCCACAAAAC | + |
|
Preference number: 4 (lower is better) Translates to: PPPLPQVGPALL*VALIHCSAPQN Trigger: GTTTTGTGGAGCAGAGCAGTGGATCAGAGCCACCAACAGGAGAGCAGGACCAACCTGAGGCAAAGGGGGCGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| CDS-3UTR GCA 90 bp | TCCTCTCCCCATGGGGATATGCACTGTACCTCTTTCCCAACAAGTATGAGTAGGGTAGAGCAAGCAGCCTaGAACCCCAACGGCCCGCGG | + |
|
Preference number: 4 (lower is better) Translates to: SSPHGDMHCTSFPTSMSRVEQAA*NPNGPR Trigger: CCGCGGGCCGTTGGGGTTGCAGGCTGCTTGCTCTAC...CCTACTCATACTTGTTGGGAAAGAGGTACAGTGCATATCCCCATGGGGAGAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| 3UTR CAA 72 bp | AGAGGGCTGTTCAGGGGCCGCATGGGTATGACGGAGTaGTACTTGTGCTGCCTGCTCACAGAATTCATCAGG | + |
|
Preference number: 4 (lower is better) Translates to: RGLFRGRMGMTE*YLCCLLTEFIR Trigger: CCTGATGAATTCTGTGAGCAGGCAGCACAAGTACAACTCCGTCATACCCATGCGGCCCCTGAACAGCCCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| CDS-3UTR TCA 90 bp | GGTGTCCTCTCCCCATGGGGATATGCACTGTACCTCTTTCCCAACAAGTATGAGACTTGGTGCCCTGAGTaGTGTCCTCGTAGAAGCACT | + |
|
Preference number: 4 (lower is better) Translates to: GVLSPWGYALYLFPNKYETWCPE*CPRRST Trigger: AGTGCTTCTACGAGGACATCACTCAGGGCACCAAGT...CTCATACTTGTTGGGAAAGAGGTACAGTGCATATCCCCATGGGGAGAGGACACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| CDS-3UTR GCA 90 bp | GGTGTCCTCTCCCCATGGGGATATGCACTGTACCTCTTTCCCAACAAGTATGAGTGTATTCAGATCCTCTaGTCGGCTTCGGCCTTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: GVLSPWGYALYLFPNKYECIQIL*SASALS Trigger: GCTCAAGGCCGAAGCCGAGCAGAGGATCTGAATACA...CTCATACTTGTTGGGAAAGAGGTACAGTGCATATCCCCATGGGGAGAGGACACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| CDS-3UTR TCA 90 bp | TCTCTTAGGAAGTTCTCAGTCAGTAACAAGATGGTCCAGGCCGACCCATTGACCACTTGGTGCCCTGAGTaGTGTCCTCGTAGAAGCACT | + |
|
Preference number: 4 (lower is better) Translates to: SLRKFSVSNKMVQADPLTTWCPE*CPRRST Trigger: AGTGCTTCTACGAGGACATCACTCAGGGCACCAAGT...GGTCAATGGGTCGGCCTGGACCATCTTGTTACTGACTGAGAACTTCCTAAGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| CDS-3UTR TCA 90 bp | ACCAGGTGTCTCTTAGGAAGTTCTCAGTCAGTAACAAGATGGTCCAGGCCGACCGACTTGAGAGCTTCATaGATGGAAACGCAGGCGGAT | + |
|
Preference number: 4 (lower is better) Translates to: TRCLLGSSQSVTRWSRPTDLRAS*METQAD Trigger: ATCCGCCTGCGTTTCCATTCATGAAGCTCTCAAGTC...GGTCGGCCTGGACCATCTTGTTACTGACTGAGAACTTCCTAAGAGACACCTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| CDS-3UTR GCA 90 bp | TTCTGCATGAAGTATCACAAATTTGAGGAACTCTTCTTCATCTTGCTCCTCAGGGTAGAGCAAGCAGCCTaGAACCCCAACGGCCCGCGG | + |
|
Preference number: 4 (lower is better) Translates to: FCMKYHKFEELFFILLLRVEQAA*NPNGPR Trigger: CCGCGGGCCGTTGGGGTTGCAGGCTGCTTGCTCTAC...CCTGAGGAGCAAGATGAAGAAGAGTTCCTCAAATTTGTGATACTTCATGCAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| CDS-3UTR CCA 90 bp | TCCTCTCCCCATGGGGATATGCACTGTACCTCTTTCCCAACAAGTATGAGTAGGCCACCAGTAATCACCTaGAACTCCAGGGTGCACTTG | + |
|
Preference number: 4 (lower is better) Translates to: SSPHGDMHCTSFPTSMSRPPVIT*NSRVHL Trigger: CAAGTGCACCCTGGAGTTCCAGGTGATTACTGGTGG...CCTACTCATACTTGTTGGGAAAGAGGTACAGTGCATATCCCCATGGGGAGAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| CDS-3UTR CCA 90 bp | CTAGATTCTGCAAATGCAGTCTTCCGCACGGCATCTCGGCGAAAACGATCCCCGACTGGGAAACAAAGGTaGGTCTTCTCCAACTTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: LDSANAVFRTASRRKRSPTGKQR*VFSNLE Trigger: TTCCAAGTTGGAGAAGACCCACCTTTGTTTCCCAGT...CGGGGATCGTTTTCGCCGAGATGCCGTGCGGAAGACTGCATTTGCAGAATCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| CDS-3UTR TCA 90 bp | TCCTCTCCCCATGGGGATATGCACTGTACCTCTTTCCCAACAAGTATGAGTAGGGACTTGAGAGCTTCATaGATGGAAACGCAGGCGGAT | + |
|
Preference number: 4 (lower is better) Translates to: SSPHGDMHCTSFPTSMSRDLRAS*METQAD Trigger: ATCCGCCTGCGTTTCCATTCATGAAGCTCTCAAGTC...CCTACTCATACTTGTTGGGAAAGAGGTACAGTGCATATCCCCATGGGGAGAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| CDS-3UTR GCA 90 bp | GGTGTCCTCTCCCCATGGGGATATGCACTGTACCTCTTTCCCAACAAGTATGAGTTCAGAAGAAACACCTaGCCTACGCTAACCACCAGA | + |
|
Preference number: 4 (lower is better) Translates to: GVLSPWGYALYLFPNKYEFRRNT*PTLTTR Trigger: TCTGGTGGTTAGCGTAGGGCAGGTGTTTCTTCTGAA...CTCATACTTGTTGGGAAAGAGGTACAGTGCATATCCCCATGGGGAGAGGACACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| 3UTR CAA 72 bp | ATGAAGTATCACAAATTTGAGGAACTCTTCTTCATCTaGCTCCTCAGGCCCCGCCCCCTTTGCCTCAGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: MKYHKFEELFFI*LLRPRPLCLRL Trigger: CAACCTGAGGCAAAGGGGGCGGGGCCTGAGGAGCAAGATGAAGAAGAGTTCCTCAAATTTGTGATACTTCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| CDS-3UTR CCA 90 bp | TCTGCGACACACTTCGTGTCTCTTTCCATATACTTTGTTGCCTCTCAAATACAGCAGGCGGATTCCATCTaGGTAAGGGCACTGACTCGG | + |
|
Preference number: 4 (lower is better) Translates to: SATHFVSLSIYFVASQIQQADSI*VRALTR Trigger: CCGAGTCAGTGCCCTTACCCAGATGGAATCCGCCTG...CTGTATTTGAGAGGCAACAAAGTATATGGAAAGAGACACGAAGTGTGTCGCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| CDS-3UTR CCA 90 bp | GGTGTCCTCTCCCCATGGGGATATGCACTGTACCTCTTTCCCAACAAGTATGAGCGACGCGGGTTGTGGTaGTTCTTTTATCTGAGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: GVLSPWGYALYLFPNKYERRGLW*FFYLRK Trigger: TTTTCTCAGATAAAAGAACCACCACAACCCGCGTCG...CTCATACTTGTTGGGAAAGAGGTACAGTGCATATCCCCATGGGGAGAGGACACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| CDS-3UTR CCA 90 bp | TCCTCTCCCCATGGGGATATGCACTGTACCTCTTTCCCAACAAGTATGAGTAGGATCCGACGCGGGTTGTaGTGGTTCTTTTATCTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: SSPHGDMHCTSFPTSMSRIRRGL*WFFYLR Trigger: TCTCAGATAAAAGAACCACCACAACCCGCGTCGGAT...CCTACTCATACTTGTTGGGAAAGAGGTACAGTGCATATCCCCATGGGGAGAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| 3UTR CAA 72 bp | TTCTCAGTCAGTAACAAGATGGTCCAGGCCGACCCATaGACCGCATCGTCTAGATTCTGCAAATGCAGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: FSVSNKMVQADP*TASSRFCKCSL Trigger: AAGACTGCATTTGCAGAATCTAGACGATGCGGTCAATGGGTCGGCCTGGACCATCTTGTTACTGACTGAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| CDS-3UTR CCA 90 bp | TCCTCTCCCCATGGGGATATGCACTGTACCTCTTTCCCAACAAGTATGAGTAGGACTGGGAAACAAAGGTaGGTCTTCTCCAACTTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: SSPHGDMHCTSFPTSMSRTGKQR*VFSNLE Trigger: TTCCAAGTTGGAGAAGACCCACCTTTGTTTCCCAGT...CCTACTCATACTTGTTGGGAAAGAGGTACAGTGCATATCCCCATGGGGAGAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| CDS-3UTR CCA 90 bp | TCTGCGACACACTTCGTGTCTCTTTCCATATACTTTGTTGCCTCTCAAATACAGCCACCAGTAATCACCTaGAACTCCAGGGTGCACTTG | + |
|
Preference number: 4 (lower is better) Translates to: SATHFVSLSIYFVASQIQPPVIT*NSRVHL Trigger: CAAGTGCACCCTGGAGTTCCAGGTGATTACTGGTGG...CTGTATTTGAGAGGCAACAAAGTATATGGAAAGAGACACGAAGTGTGTCGCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| 3UTR CAA 72 bp | TTTCTGCGACACACTTCGTGTCTCTTTCCATATACTTaGTTGCCTCTCAAATACAGACTCCCGGAAAATTCT | + |
|
Preference number: 4 (lower is better) Translates to: FLRHTSCLFPYT*LPLKYRLPENS Trigger: AGAATTTTCCGGGAGTCTGTATTTGAGAGGCAACAAAGTATATGGAAAGAGACACGAAGTGTGTCGCAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| CDS GCA 90 bp | GGCTTCCCCCACCGACCAATAGGCCACTCTTGTATTCAGATCCTCTaGTCGGCTTCGGCCTTGAGCTTCCCGGAGCCGGAAATGTGTCTG | + |
|
Preference number: 5 (lower is better) Translates to: GFPHRPIGHSCIQIL*SASALSFPEPEMCL Trigger: CAGACACATTTCCGGCTCCGGGAAGCTCAAGGCCGAAGCCGAGCAGAGGATCTGAATACAAGAGTGGCCTATTGGTCGGTGGGGGAAGCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| CDS-3UTR CAA 90 bp | GCGCCAAGGGAGTCCGTTCCCGGGGAAGAGGGCTGTTCAGGGGCCGCATGGGTATGGGTCTTCTCCAACTaGGAAATCGAAATACACTGT | + |
|
Preference number: 5 (lower is better) Translates to: APRESVPGEEGCSGAAWVWVFSN*EIEIHC Trigger: ACAGTGTATTTCGATTTCCAAGTTGGAGAAGACCCA...TACCCATGCGGCCCCTGAACAGCCCTCTTCCCCGGGAACGGACTCCCTTGGCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| CDS-3UTR CAA 90 bp | GGTGTCCTCTCCCCATGGGGATATGCACTGTACCTCTTTCCCAACAAGTATGAGTGCTCGGCTTCGGCCTaGAGCTTCCCGGAGCCGGAA | + |
|
Preference number: 5 (lower is better) Translates to: GVLSPWGYALYLFPNKYECSASA*SFPEPE Trigger: TTCCGGCTCCGGGAAGCTCAAGGCCGAAGCCGAGCA...CTCATACTTGTTGGGAAAGAGGTACAGTGCATATCCCCATGGGGAGAGGACACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| CDS-3UTR CAA 90 bp | GCTCACAGAATTCATCAGGGAAGTGTAGAACTGGAAGTTACACCAGGTGTCTCTTGCTCGGCTTCGGCCTaGAGCTTCCCGGAGCCGGAA | + |
|
Preference number: 5 (lower is better) Translates to: AHRIHQGSVELEVTPGVSCSASA*SFPEPE Trigger: TTCCGGCTCCGGGAAGCTCAAGGCCGAAGCCGAGCA...AGAGACACCTGGTGTAACTTCCAGTTCTACACTTCCCTGATGAATTCTGTGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| CDS-3UTR CAA 90 bp | TCCTCTCCCCATGGGGATATGCACTGTACCTCTTTCCCAACAAGTATGAGTAGGAGGATCCGACGCGGGTaGTGGTGGTTCTTTTATCTG | + |
|
Preference number: 5 (lower is better) Translates to: SSPHGDMHCTSFPTSMSRRIRRG*WWFFYL Trigger: CAGATAAAAGAACCACCACAACCCGCGTCGGATCCT...CCTACTCATACTTGTTGGGAAAGAGGTACAGTGCATATCCCCATGGGGAGAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| CDS-3UTR CAA 90 bp | GGTGTCCTCTCCCCATGGGGATATGCACTGTACCTCTTTCCCAACAAGTATGAGACCAATAGGCCACTCTaGTATTCAGATCCTCTGCTC | + |
|
Preference number: 5 (lower is better) Translates to: GVLSPWGYALYLFPNKYETNRPL*YSDPLL Trigger: GAGCAGAGGATCTGAATACAAGAGTGGCCTATTGGT...CTCATACTTGTTGGGAAAGAGGTACAGTGCATATCCCCATGGGGAGAGGACACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| CDS-3UTR CAA 90 bp | TCTCTTAGGAAGTTCTCAGTCAGTAACAAGATGGTCCAGGCCGACCCATTGACCTTGCTGAAGCAAAACTaGTACGTCCCATTTCTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: SLRKFSVSNKMVQADPLTLLKQN*YVPFLE Trigger: CTCCAGAAATGGGACGTACAAGTTTTGCTTCAGCAA...GGTCAATGGGTCGGCCTGGACCATCTTGTTACTGACTGAGAACTTCCTAAGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| CDS-3UTR CAA 90 bp | TCCTCTCCCCATGGGGATATGCACTGTACCTCTTTCCCAACAAGTATGAGTAGGTTGCTGAAGCAAAACTaGTACGTCCCATTTCTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: SSPHGDMHCTSFPTSMSRLLKQN*YVPFLE Trigger: CTCCAGAAATGGGACGTACAAGTTTTGCTTCAGCAA...CCTACTCATACTTGTTGGGAAAGAGGTACAGTGCATATCCCCATGGGGAGAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| CDS CCA 90 bp | CATCTGGGTAAGGGCACTGACTCGGTTCTCACTGGGAAACAAAGGTaGGTCTTCTCCAACTTGGAAATCGAAATACACTGTTTTGTGTGT | + |
|
Preference number: 5 (lower is better) Translates to: HLGKGTDSVLTGKQR*VFSNLEIEIHCFVC Trigger: ACACACAAAACAGTGTATTTCGATTTCCAAGTTGGAGAAGACCCACCTTTGTTTCCCAGTGAGAACCGAGTCAGTGCCCTTACCCAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036030.14 ENSMUST00000151189.2 |
||
| CDS-3UTR CAA 90 bp | TCCTCTCCCCATGGGGATATGCACTGTACCTCTTTCCCAACAAGTATGAGTAGGTGTTTCTTCATCTCCTaGTACAACACTTTACCATCA | + |
|
Preference number: 5 (lower is better) Translates to: SSPHGDMHCTSFPTSMSRCFFIS*YNTLPS Trigger: TGATGGTAAAGTGTTGTACAAGGAGATGAAGAAACA...CCTACTCATACTTGTTGGGAAAGAGGTACAGTGCATATCCCCATGGGGAGAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| CDS-3UTR CAA 90 bp | GCTCACAGAATTCATCAGGGAAGTGTAGAACTGGAAGTTACACCAGGTGTCTCTTGTTTCTTCATCTCCTaGTACAACACTTTACCATCA | + |
|
Preference number: 5 (lower is better) Translates to: AHRIHQGSVELEVTPGVSCFFIS*YNTLPS Trigger: TGATGGTAAAGTGTTGTACAAGGAGATGAAGAAACA...AGAGACACCTGGTGTAACTTCCAGTTCTACACTTCCCTGATGAATTCTGTGAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| CDS GCA 72 bp | TCGGAGCCGGCAGGAGCAGCAGTAGAGCAAGCAGCCTaGAACCCCAACGGCCCGCGGCGGCCGCCCAGCGCG | + |
|
Preference number: 6 (lower is better) Translates to: SEPAGAAVEQAA*NPNGPRRPPSA Trigger: CGCGCTGGGCGGCCGCCGCGGGCCGTTGGGGTTGCAGGCTGCTTGCTCTACTGCTGCTCCTGCCGGCTCCGA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036030.14 ENSMUST00000151189.2 |
||
| CDS CAA 72 bp | CACTCTTGTATTCAGATCCTCTGCTCGGCTTCGGCCTaGAGCTTCCCGGAGCCGGAAATGTGTCTGATAGTC | + |
|
Preference number: 6 (lower is better) Translates to: HSCIQILCSASA*SFPEPEMCLIV Trigger: GACTATCAGACACATTTCCGGCTCCGGGAAGCTCAAGGCCGAAGCCGAGCAGAGGATCTGAATACAAGAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036030.14 ENSMUST00000151189.2 |
||
| CDS CAA 90 bp | CCAATAGGCCACTCTTGTATTCAGATCCTCTGCTCGGCTTCGGCCTaGAGCTTCCCGGAGCCGGAAATGTGTCTGATAGTCAATGACGGA | + |
|
Preference number: 6 (lower is better) Translates to: PIGHSCIQILCSASA*SFPEPEMCLIVNDG Trigger: TCCGTCATTGACTATCAGACACATTTCCGGCTCCGGGAAGCTCAAGGCCGAAGCCGAGCAGAGGATCTGAATACAAGAGTGGCCTATTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| CDS CAA 90 bp | TCAATAGGCCACTCTTGTATTCAGATCCTCTGCTCGGCTTCGGCCTaGAGCTTCCCGGAGCCGGAAATGTGTCTGATAGTCAATGACGGA | + |
|
Preference number: 6 (lower is better) Translates to: SIGHSCIQILCSASA*SFPEPEMCLIVNDG Trigger: TCCGTCATTGACTATCAGACACATTTCCGGCTCCGGGAAGCTCAAGGCCGAAGCCGAGCAGAGGATCTGAATACAAGAGTGGCCTATTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036030.14 |
||
| CDS GCA 72 bp | CTTTTATCTGAGAAAAAGCTCTTCAGAAGAAACACCTaGCCTACGCTAACCACCAGAAGGATGAGGGCTTCC | + |
|
Preference number: 6 (lower is better) Translates to: LLSEKKLFRRNT*PTLTTRRMRAS Trigger: GGAAGCCCTCATCCTTCTGGTGGTTAGCGTAGGGCAGGTGTTTCTTCTGAAGAGCTTTTTCTCAGATAAAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000151189.2 |
||
| CDS CCA 72 bp | AAGGGCACTGACTCGGTTCTCACTGGGAAACAAAGGTaGGTCTTCTCCAACTTGGAAATCGAAATACACTGT | + |
|
Preference number: 6 (lower is better) Translates to: KGTDSVLTGKQR*VFSNLEIEIHC Trigger: ACAGTGTATTTCGATTTCCAAGTTGGAGAAGACCCACCTTTGTTTCCCAGTGAGAACCGAGTCAGTGCCCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036030.14 ENSMUST00000151189.2 |
||
| CDS CAA 90 bp | CTGGAGGCTGTGAAGGTGAAACTATCATACTGTTTCTTCATCTCCTaGTACAACACTTTACCATCAGGATCTTCCAATCGACAATCAACA | + |
|
Preference number: 6 (lower is better) Translates to: LEAVKVKLSYCFFIS*YNTLPSGSSNRQST Trigger: TGTTGATTGTCGATTGGAAGATCCTGATGGTAAAGTGTTGTACAAGGAGATGAAGAAACAGTATGATAGTTTCACCTTCACAGCCTCCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036030.14 ENSMUST00000151189.2 |
||
| CDS CAA 72 bp | GTGAAGGTGAAACTATCATACTGTTTCTTCATCTCCTaGTACAACACTTTACCATCAGGATCTTCCAATCGA | + |
|
Preference number: 6 (lower is better) Translates to: VKVKLSYCFFIS*YNTLPSGSSNR Trigger: TCGATTGGAAGATCCTGATGGTAAAGTGTTGTACAAGGAGATGAAGAAACAGTATGATAGTTTCACCTTCAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036030.14 ENSMUST00000151189.2 |
||