Pregenerated sensors for TMED4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004394Ensembl transcript IDs: ENSMUST00000004508.13, ENSMUST00000132147.3
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CATTCACAAAGCCATTGGGAGAACTCGGGACTGACCCAGGAACGTTaGGGCAAGGCCTCCTCCTCCACAGGCGTGCCAGCTGCTTACTCA | + |
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Preference number: 1 (lower is better) Translates to: HSQSHWENSGLTQER*GKASSSTGVPAAYS Trigger: TGAGTAAGCAGCTGGCACGCCTGTGGAGGAGGAGGCCTTGCCTCAACGTTCCTGGGTCAGTCCCGAGTTCTCCCAATGGCTTTGTGAATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR TCA 90 bp | GGAGAACCAGGGTCACAGGTAGCTGGTCTGAGTGGCTTAGTGCCATaGCGCCAGTGCCATGATGCCAGTGTGACACCAGTGACACACTGT | + |
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Preference number: 1 (lower is better) Translates to: GEPGSQVAGLSGLVP*RQCHDASVTPVTHC Trigger: ACAGTGTGTCACTGGTGTCACACTGGCATCATGGCACTGGCGTCATGGCACTAAGCCACTCAGACCAGCTACCTGTGACCCTGGTTCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR CCA 90 bp | GTGAAACTGGAGCATCTGCCACTCTCTCCTGACACTGTGAGCCTGTaGGAACGGACTCACAAGCATTCCAGAGAACTCTTGTTGGCCGTC | + |
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Preference number: 1 (lower is better) Translates to: VKLEHLPLSPDTVSL*ERTHKHSRELLLAV Trigger: GACGGCCAACAAGAGTTCTCTGGAATGCTTGTGAGTCCGTTCCCACAGGCTCACAGTGTCAGGAGAGAGTGGCAGATGCTCCAGTTTCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR GCA 90 bp | CCAGGAACGTTGAGGCAAGGCCTCCTCCTCCACAGGCGTGCCAGCTaGTTACTCAACAAGCAACAAACAGAAGACACAAGTGCATTTGGT | + |
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Preference number: 1 (lower is better) Translates to: PGTLRQGLLLHRRAS*LLNKQQTEDTSAFG Trigger: ACCAAATGCACTTGTGTCTTCTGTTTGTTGCTTGTTGAGTAAGCAGCTGGCACGCCTGTGGAGGAGGAGGCCTTGCCTCAACGTTCCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR TCA 90 bp | GTTTACCACTGCTTAAGTGAAACTGGAGCATCTGCCACTCTCTCCTaGCACTGTGAGCCTGTGGGAACGGACTCACAAGCATTCCAGAGA | + |
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Preference number: 1 (lower is better) Translates to: VYHCLSETGASATLS*HCEPVGTDSQAFQR Trigger: TCTCTGGAATGCTTGTGAGTCCGTTCCCACAGGCTCACAGTGTCAGGAGAGAGTGGCAGATGCTCCAGTTTCACTTAAGCAGTGGTAAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR CAA 90 bp | CTCCTTCAGGGCCCTGAACTGCCCTTATTTACATTCACAAAGCCATaGGGAGAACTCGGGACTGACCCAGGAACGTTGAGGCAAGGCCTC | + |
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Preference number: 2 (lower is better) Translates to: LLQGPELPLFTFTKP*GELGTDPGTLRQGL Trigger: GAGGCCTTGCCTCAACGTTCCTGGGTCAGTCCCGAGTTCTCCCAATGGCTTTGTGAATGTAAATAAGGGCAGTTCAGGGCCCTGAAGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR-3UTR TCA 90 bp | ACGCCTGCCTCTTTAATCACAACATTTGGTAGGCATACTCACGGAGGATCTGAGATGACGCCAGTGCCATaGTGCCAGTGTGACACCAGT | + |
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Preference number: 2 (lower is better) Translates to: TPASLITTFGRHTHGGSEMTPVP*CQCDTS Trigger: ACTGGTGTCACACTGGCATCATGGCACTGGCGTCAT...CTCAGATCCTCCGTGAGTATGCCTACCAAATGTTGTGATTAAAGAGGCAGGCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR-3UTR GCA 90 bp | ACGCCTGCCTCTTTAATCACAACATTTGGTAGGCATACTCACGGAGGATCTGAGCCTCCTCCACAGGCGTaGCAGCTGCTTACTCAACAA | + |
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Preference number: 2 (lower is better) Translates to: TPASLITTFGRHTHGGSEPPPQA*QLLTQQ Trigger: TTGTTGAGTAAGCAGCTGGCACGCCTGTGGAGGAGG...CTCAGATCCTCCGTGAGTATGCCTACCAAATGTTGTGATTAAAGAGGCAGGCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR-3UTR CCA 90 bp | CACTCCAGGTTTTCTCCAAAGGTAAGCAGTCGAGGCGGCAACCTTCTTTCCCCCAGACACAAGTGCATTTaGTCATCTCGGAGGCAAAAG | + |
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Preference number: 2 (lower is better) Translates to: HSRFSPKVSSRGGNLLSPRHKCI*SSRRQK Trigger: CTTTTGCCTCCGAGATGACCAAATGCACTTGTGTCT...GGGGGAAAGAAGGTTGCCGCCTCGACTGCTTACCTTTGGAGAAAACCTGGAGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR-3UTR TCA 90 bp | ACTCTGGTTCCCTTGAAGAAAATATTTATCAGGTGTGGTGACGCCTGCCTCTTTTCTGCCACTCTCTCCTaGCACTGTGAGCCTGTGGGA | + |
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Preference number: 2 (lower is better) Translates to: TLVPLKKIFIRCGDACLFSATLS*HCEPVG Trigger: TCCCACAGGCTCACAGTGTCAGGAGAGAGTGGCAGA...AAAGAGGCAGGCGTCACCACACCTGATAAATATTTTCTTCAAGGGAACCAGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR-3UTR TCA 90 bp | TTACTCAACAAGCAACAAACAGAAGACACAAGTGCATTTGGTCATCTCGGAGGCCAAATTCCAGGTGGATaGGGGGCTGGGTGGGGAAAT | + |
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Preference number: 2 (lower is better) Translates to: LLNKQQTEDTSAFGHLGGQIPGG*GAGWGN Trigger: ATTTCCCCACCCAGCCCCTCATCCACCTGGAATTTG...GCCTCCGAGATGACCAAATGCACTTGTGTCTTCTGTTTGTTGCTTGTTGAGTAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR-3UTR CCA 90 bp | AAGAACCAAACTCTGGTTCCCTTGAAGAAAATATTTATCAGGTGTGGTGACGCCTCCTCAAATTCCAGGTaGATGAGGGGCTGGGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: KNQTLVPLKKIFIRCGDASSNSR*MRGWVG Trigger: CCCCACCCAGCCCCTCATCCACCTGGAATTTGAGGA...GGCGTCACCACACCTGATAAATATTTTCTTCAAGGGAACCAGAGTTTGGTTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR-3UTR GCA 90 bp | GCACGAATGCCCACTGAAGTCCACTCCAGGTTTTCTCCAAAGGTAAGCAGTCGAGAGTGCCGAAATCACTaGATGGCAGTTTTTAAAACT | + |
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Preference number: 2 (lower is better) Translates to: ARMPTEVHSRFSPKVSSRECRNH*MAVFKT Trigger: AGTTTTAAAAACTGCCATGCAGTGATTTCGGCACTC...TCGACTGCTTACCTTTGGAGAAAACCTGGAGTGGACTTCAGTGGGCATTCGTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR-3UTR GCA 90 bp | CCTGTTGTTGTTAGTTCTTTGCAGTATTTTACCGATGAGGGTGACTTAGCACGACACAGGCGTGCCAGCTaGTTACTCAACAAGCAACAA | + |
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Preference number: 2 (lower is better) Translates to: PVVVSSLQYFTDEGDLARHRRAS*LLNKQQ Trigger: TTGTTGCTTGTTGAGTAAGCAGCTGGCACGCCTGTG...TCGTGCTAAGTCACCCTCATCGGTAAAATACTGCAAAGAACTAACAACAACAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR-3UTR CCA 90 bp | AAGAACCAAACTCTGGTTCCCTTGAAGAAAATATTTATCAGGTGTGGTGACGCCCATTCACAAAGCCATTaGGAGAACTCGGGACTGACC | + |
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Preference number: 2 (lower is better) Translates to: KNQTLVPLKKIFIRCGDAHSQSH*ENSGLT Trigger: GGTCAGTCCCGAGTTCTCCCAATGGCTTTGTGAATG...GGCGTCACCACACCTGATAAATATTTTCTTCAAGGGAACCAGAGTTTGGTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR TCA 72 bp | AGCCATTGGGAGAACTCGGGACTGACCCAGGAACGTTaGGGCAAGGCCTCCTCCTCCACAGGCGTGCCAGCT | + |
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Preference number: 3 (lower is better) Translates to: SHWENSGLTQER*GKASSSTGVPA Trigger: AGCTGGCACGCCTGTGGAGGAGGAGGCCTTGCCTCAACGTTCCTGGGTCAGTCCCGAGTTCTCCCAATGGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR TCA 72 bp | GGGTCACAGGTAGCTGGTCTGAGTGGCTTAGTGCCATaGCGCCAGTGCCATGATGCCAGTGTGACACCAGTG | + |
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Preference number: 3 (lower is better) Translates to: GSQVAGLSGLVP*RQCHDASVTPV Trigger: CACTGGTGTCACACTGGCATCATGGCACTGGCGTCATGGCACTAAGCCACTCAGACCAGCTACCTGTGACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR CCA 72 bp | GGGAACGGACTCACAAGCATTCCAGAGAACTCTTGTTaGCCGTCTGACAGGGAGCTGCTGTCTGGCCCCAGA | + |
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Preference number: 3 (lower is better) Translates to: GNGLTSIPENSC*PSDRELLSGPR Trigger: TCTGGGGCCAGACAGCAGCTCCCTGTCAGACGGCCAACAAGAGTTCTCTGGAATGCTTGTGAGTCCGTTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR TCA 72 bp | ACTCACAAGCATTCCAGAGAACTCTTGTTGGCCGTCTaGCAGGGAGCTGCTGTCTGGCCCCAGAGTGCCGAA | + |
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Preference number: 3 (lower is better) Translates to: THKHSRELLLAV*QGAAVWPQSAE Trigger: TTCGGCACTCTGGGGCCAGACAGCAGCTCCCTGTCAGACGGCCAACAAGAGTTCTCTGGAATGCTTGTGAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR CCA 72 bp | ACGTCTGCTTCTTGGAGAACCAGGGTCACAGGTAGCTaGTCTGAGTGGCTTAGTGCCATGACGCCAGTGCCA | + |
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Preference number: 3 (lower is better) Translates to: TSASWRTRVTGS*SEWLSAMTPVP Trigger: TGGCACTGGCGTCATGGCACTAAGCCACTCAGACCAGCTACCTGTGACCCTGGTTCTCCAAGAAGCAGACGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR GCA 72 bp | AGGAACGTTGAGGCAAGGCCTCCTCCTCCACAGGCGTaGCAGCTGCTTACTCAACAAGCAACAAACAGAAGA | + |
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Preference number: 3 (lower is better) Translates to: RNVEARPPPPQA*QLLTQQATNRR Trigger: TCTTCTGTTTGTTGCTTGTTGAGTAAGCAGCTGGCACGCCTGTGGAGGAGGAGGCCTTGCCTCAACGTTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR-3UTR CAA 90 bp | ACGCCTGCCTCTTTAATCACAACATTTGGTAGGCATACTCACGGAGGATCTGAGACTGACCCAGGAACGTaGAGGCAAGGCCTCCTCCTC | + |
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Preference number: 3 (lower is better) Translates to: TPASLITTFGRHTHGGSETDPGT*RQGLLL Trigger: GAGGAGGAGGCCTTGCCTCAACGTTCCTGGGTCAGT...CTCAGATCCTCCGTGAGTATGCCTACCAAATGTTGTGATTAAAGAGGCAGGCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR TCA 72 bp | ATTTACATTCACAAAGCCATTGGGAGAACTCGGGACTaGCCCAGGAACGTTGAGGCAAGGCCTCCTCCTCCA | + |
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Preference number: 3 (lower is better) Translates to: IYIHKAIGRTRD*PRNVEARPPPP Trigger: TGGAGGAGGAGGCCTTGCCTCAACGTTCCTGGGTCAGTCCCGAGTTCTCCCAATGGCTTTGTGAATGTAAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR TCA 72 bp | TGCTTAAGTGAAACTGGAGCATCTGCCACTCTCTCCTaGCACTGTGAGCCTGTGGGAACGGACTCACAAGCA | + |
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Preference number: 3 (lower is better) Translates to: CLSETGASATLS*HCEPVGTDSQA Trigger: TGCTTGTGAGTCCGTTCCCACAGGCTCACAGTGTCAGGAGAGAGTGGCAGATGCTCCAGTTTCACTTAAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR GCA 72 bp | TTGAGGCAAGGCCTCCTCCTCCACAGGCGTGCCAGCTaGTTACTCAACAAGCAACAAACAGAAGACACAAGT | + |
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Preference number: 3 (lower is better) Translates to: LRQGLLLHRRAS*LLNKQQTEDTS Trigger: ACTTGTGTCTTCTGTTTGTTGCTTGTTGAGTAAGCAGCTGGCACGCCTGTGGAGGAGGAGGCCTTGCCTCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR TCA 72 bp | GTGCATTTGGTCATCTCGGAGGCAAAAGAAAGGACTTaGCCTTGGGTTAATTCCAACTTCTCCCAAACCCTA | + |
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Preference number: 3 (lower is better) Translates to: VHLVISEAKERT*PWVNSNFSQTL Trigger: TAGGGTTTGGGAGAAGTTGGAATTAACCCAAGGTCAAGTCCTTTCTTTTGCCTCCGAGATGACCAAATGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR GCA 72 bp | CTGCTTACTCAACAAGCAACAAACAGAAGACACAAGTaGATTTGGTCATCTCGGAGGCAAAAGAAAGGACTT | + |
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Preference number: 3 (lower is better) Translates to: LLTQQATNRRHK*IWSSRRQKKGL Trigger: AAGTCCTTTCTTTTGCCTCCGAGATGACCAAATGCACTTGTGTCTTCTGTTTGTTGCTTGTTGAGTAAGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR GCA 72 bp | TATAGAAAAACATCTCACTCCTTCAGGGCCCTGAACTaGCCTTATTTACATTCACAAAGCCATTGGGAGAAC | + |
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Preference number: 3 (lower is better) Translates to: YRKTSHSFRALN*PYLHSQSHWEN Trigger: GTTCTCCCAATGGCTTTGTGAATGTAAATAAGGGCAGTTCAGGGCCCTGAAGGAGTGAGATGTTTTTCTATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR CAA 72 bp | AAGCCATTGGGAGAACTCGGGACTGACCCAGGAACGTaGAGGCAAGGCCTCCTCCTCCACAGGCGTGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: KPLGELGTDPGT*RQGLLLHRRAS Trigger: GCTGGCACGCCTGTGGAGGAGGAGGCCTTGCCTCAACGTTCCTGGGTCAGTCCCGAGTTCTCCCAATGGCTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| CDS-3UTR CCA 90 bp | CTTCTCCCAAACCCTAAGGCAGCTCTTGAAGGCTTAGACCAACGTCTGCTTCTTTCTCGGGGTAGTTGTTaGCATGCTCTCCAACCTGGA | + |
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Preference number: 4 (lower is better) Translates to: LLPNPKAALEGLDQRLLLSRGSC*HALQPG Trigger: TCCAGGTTGGAGAGCATGCCAACAACTACCCCGAGA...AAGAAGCAGACGTTGGTCTAAGCCTTCAAGAGCTGCCTTAGGGTTTGGGAGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| CDS-3UTR CCA 90 bp | TTACTCAACAAGCAACAAACAGAAGACACAAGTGCATTTGGTCATCTCGGAGGCTGGTCACCGGGTGTGTaGGATGTGAACGTGAAACGG | + |
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Preference number: 4 (lower is better) Translates to: LLNKQQTEDTSAFGHLGGWSPGV*DVNVKR Trigger: CCGTTTCACGTTCACATCCCACACACCCGGTGACCA...GCCTCCGAGATGACCAAATGCACTTGTGTCTTCTGTTTGTTGCTTGTTGAGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| CDS-3UTR CCA 90 bp | ACTCTGGTTCCCTTGAAGAAAATATTTATCAGGTGTGGTGACGCCTGCCTCTTTTGGATCTGTTCCACCTaGTCAAGCAACTGGCGAGCT | + |
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Preference number: 4 (lower is better) Translates to: TLVPLKKIFIRCGDACLFWICST*SSNWRA Trigger: AGCTCGCCAGTTGCTTGACCAGGTGGAACAGATCCA...AAAGAGGCAGGCGTCACCACACCTGATAAATATTTTCTTCAAGGGAACCAGAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| CDS-3UTR CCA 90 bp | ACAAGCAACAAACAGAAGACACAAGTGCATTTGGTCATCTCGGAGGCAAAAGAAATGAGGATAACGGTCTaGGCGATGGACCACCACAGG | + |
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Preference number: 4 (lower is better) Translates to: TSNKQKTQVHLVISEAKEMRITV*AMDHHR Trigger: CCTGTGGTGGTCCATCGCCCAGACCGTTATCCTCAT...TTCTTTTGCCTCCGAGATGACCAAATGCACTTGTGTCTTCTGTTTGTTGCTTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| CDS-3UTR CCA 90 bp | ACTCTGGTTCCCTTGAAGAAAATATTTATCAGGTGTGGTGACGCCTGCCTCTTTCGAAGAGAGCCATTCTaGTGGAGTTGGAGTGAAGAC | + |
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Preference number: 4 (lower is better) Translates to: TLVPLKKIFIRCGDACLFRREPF*WSWSED Trigger: GTCTTCACTCCAACTCCACCAGAATGGCTCTCTTCG...AAAGAGGCAGGCGTCACCACACCTGATAAATATTTTCTTCAAGGGAACCAGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR CAA 72 bp | GCGGTTTACTGTTCAGGAGCCAACACTAACCTGTTGTaGTTAGTTCTTTGCAGTATTTTACCGATGAGGGTG | + |
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Preference number: 4 (lower is better) Translates to: AVYCSGANTNLL*LVLCSILPMRV Trigger: CACCCTCATCGGTAAAATACTGCAAAGAACTAACAACAACAGGTTAGTGTTGGCTCCTGAACAGTAAACCGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| CDS-3UTR CCA 90 bp | TTACTCAACAAGCAACAAACAGAAGACACAAGTGCATTTGGTCATCTCGGAGGCCCATTCTGGTGGAGTTaGAGTGAAGACAAATCTGAT | + |
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Preference number: 4 (lower is better) Translates to: LLNKQQTEDTSAFGHLGGPFWWS*SEDKSD Trigger: ATCAGATTTGTCTTCACTCCAACTCCACCAGAATGG...GCCTCCGAGATGACCAAATGCACTTGTGTCTTCTGTTTGTTGCTTGTTGAGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| CDS-3UTR CCA 90 bp | ATTTGGTCATCTCGGAGGCAAAAGAAAGGACTTGACCTTGGGTTAATTCCAACTAGAGAGCCATTCTGGTaGAGTTGGAGTGAAGACAAA | + |
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Preference number: 4 (lower is better) Translates to: IWSSRRQKKGLDLGLIPTREPFW*SWSEDK Trigger: TTTGTCTTCACTCCAACTCCACCAGAATGGCTCTCT...AGTTGGAATTAACCCAAGGTCAAGTCCTTTCTTTTGCCTCCGAGATGACCAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| 3UTR CAA 72 bp | AGAGCGGTTTACTGTTCAGGAGCCAACACTAACCTGTaGTTGTTAGTTCTTTGCAGTATTTTACCGATGAGG | + |
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Preference number: 4 (lower is better) Translates to: RAVYCSGANTNL*LLVLCSILPMR Trigger: CCTCATCGGTAAAATACTGCAAAGAACTAACAACAACAGGTTAGTGTTGGCTCCTGAACAGTAAACCGCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| CDS-3UTR CAA 90 bp | TCCTCCTCAAATTCCAGGTGGATGAGGGGCTGGGTGGGGAAATTATCAAATAATAAGTGTACACGCAGTTaGCCTCCAGCGAAGAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: SSSNSRWMRGWVGKLSNNKCTRS*PPAKRA Trigger: GGCTCTCTTCGCTGGAGGCAAACTGCGTGTACACTT...ATTATTTGATAATTTCCCCACCCAGCCCCTCATCCACCTGGAATTTGAGGAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004508.13 |
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| CDS CAA 72 bp | AGGCCGGGGGTCGACGGCAGGAACACCTCTTTCTGTTaGTCCCACATCATGGTCTCGTCGGGTATTTCCTCG | + |
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Preference number: 6 (lower is better) Translates to: RPGVDGRNTSFC*SHIMVSSGISS Trigger: CGAGGAAATACCCGACGAGACCATGATGTGGGACAAACAGAAAGAGGTGTTCCTGCCGTCGACCCCCGGCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000132147.3 |
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| CDS GCA 72 bp | GCTCTCCAACCTGGATGTCCAAGTGTACACGCAGTTTaGCTCCAGCGAAGAGAGCCATTCTGGTGGAGTTGG | + |
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Preference number: 6 (lower is better) Translates to: ALQPGCPSVHAV*LQRREPFWWSW Trigger: CCAACTCCACCAGAATGGCTCTCTTCGCTGGAGGCAAACTGCGTGTACACTTGGACATCCAGGTTGGAGAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004508.13 ENSMUST00000132147.3 |
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| CDS CAA 72 bp | TGCTCTCCAACCTGGATGTCCAAGTGTACACGCAGTTaGCCTCCAGCGAAGAGAGCCATTCTGGTGGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: CSPTWMSKCTRS*PPAKRAILVEL Trigger: CAACTCCACCAGAATGGCTCTCTTCGCTGGAGGCAAACTGCGTGTACACTTGGACATCCAGGTTGGAGAGCA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004508.13 ENSMUST00000132147.3 |
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| CDS CCA 72 bp | TGTTCCACCTGGTCAAGCAACTGGCGAGCTCGAAGCTaGAGCTCTGTTAACTTATCCTTAGCAGCGATCTCG | + |
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Preference number: 6 (lower is better) Translates to: CSTWSSNWRARS*SSVNLSLAAIS Trigger: CGAGATCGCTGCTAAGGATAAGTTAACAGAGCTCCAGCTTCGAGCTCGCCAGTTGCTTGACCAGGTGGAACA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004508.13 ENSMUST00000132147.3 |
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