Pregenerated sensors for TMED3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032353Ensembl transcript IDs: ENSMUST00000058488.9
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGTTGTTGGAGTGCAAAGATCAGATATGTGCGCCTTTGGTCTCCCTaGTGCTCTCCCTCTTCTCTGTGTCACACCACCAGCCCTGTAGGA | + |
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Preference number: 1 (lower is better) Translates to: RCWSAKIRYVRLWSP*CSPSSLCHTTSPVG Trigger: TCCTACAGGGCTGGTGGTGTGACACAGAGAAGAGGGAGAGCAGCAGGGAGACCAAAGGCGCACATATCTGATCTTTGCACTCCAACAACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| 3UTR CAA 90 bp | CCTAAACTGCCCTGGAGGTCCAGGCACTTGGAGTTCTCCTACAGATaGGATGCTAGATCACTGGCCTCCCGTAGTGACCAAACCCTAGGT | + |
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Preference number: 2 (lower is better) Translates to: PKLPWRSRHLEFSYR*DARSLASRSDQTLG Trigger: ACCTAGGGTTTGGTCACTACGGGAGGCCAGTGATCTAGCATCCAATCTGTAGGAGAACTCCAAGTGCCTGGACCTCCAGGGCAGTTTAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| 3UTR-3UTR CCA 90 bp | GTCCACGAAGGGAAGGCAAGAACTCAGGGTCCCTTTCTCAAGATGGAAGAAGACAGATATGTGCGCCTTTaGTCTCCCTGCTGCTCTCCC | + |
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Preference number: 2 (lower is better) Translates to: VHEGKARTQGPFLKMEEDRYVRL*SPCCSP Trigger: GGGAGAGCAGCAGGGAGACCAAAGGCGCACATATCT...GTCTTCTTCCATCTTGAGAAAGGGACCCTGAGTTCTTGCCTTCCCTTCGTGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| 3UTR CAA 90 bp | ACACACAATACAATCAGATTACCGGGGCTCTGTGAGCTTCCGTTGTaGGAGTGCAAAGATCAGATATGTGCGCCTTTGGTCTCCCTGCTG | + |
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Preference number: 2 (lower is better) Translates to: THNTIRLPGLCELPL*ECKDQICAPLVSLL Trigger: CAGCAGGGAGACCAAAGGCGCACATATCTGATCTTTGCACTCCAACAACGGAAGCTCACAGAGCCCCGGTAATCTGATTGTATTGTGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| 3UTR-3UTR GCA 90 bp | GGCACTCACTCACTCTCTACTTGGGTCCTGGTTGTATGTCTGACCCTACTGTTTCAAAGATCAGATATGTaGGCCTTTGGTCTCCCTGCT | + |
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Preference number: 2 (lower is better) Translates to: GTHSLSTWVLVVCLTLLFQRSDM*AFGLPA Trigger: AGCAGGGAGACCAAAGGCGCACATATCTGATCTTTG...AAACAGTAGGGTCAGACATACAACCAGGACCCAAGTAGAGAGTGAGTGAGTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| 3UTR-3UTR GCA 90 bp | AGACCAGCTTTCCTCAGGAATAGAGAGGTCCACGAAGGGAAGGCAAGAACTCAGCTTCCGTTGTTGGAGTaGAAAGATCAGATATGTGCG | + |
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Preference number: 2 (lower is better) Translates to: RPAFLRNREVHEGKARTQLPLLE*KDQICA Trigger: CGCACATATCTGATCTTTGCACTCCAACAACGGAAG...CTGAGTTCTTGCCTTCCCTTCGTGGACCTCTCTATTCCTGAGGAAAGCTGGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| 3UTR-3UTR CCA 90 bp | AGACCAGCTTTCCTCAGGAATAGAGAGGTCCACGAAGGGAAGGCAAGAACTCAGGTCCCTTTCTCAAGATaGAAGAAGACACAACCACCT | + |
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Preference number: 2 (lower is better) Translates to: RPAFLRNREVHEGKARTQVPFSR*KKTQPP Trigger: AGGTGGTTGTGTCTTCTTCCATCTTGAGAAAGGGAC...CTGAGTTCTTGCCTTCCCTTCGTGGACCTCTCTATTCCTGAGGAAAGCTGGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| 3UTR-3UTR CCA 90 bp | AGAGGTCCACGAAGGGAAGGCAAGAACTCAGGGTCCCTTTCTCAAGATGGAAGAACCTGTAAACACTTTTaGCCAATGTTACACACACAA | + |
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Preference number: 2 (lower is better) Translates to: RGPRREGKNSGSLSQDGRTCKHF*PMLHTQ Trigger: TTGTGTGTGTAACATTGGCCAAAAGTGTTTACAGGT...TCTTCCATCTTGAGAAAGGGACCCTGAGTTCTTGCCTTCCCTTCGTGGACCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| 3UTR CCA 72 bp | AAGGGAAGGCAAGAACTCAGGGTCCCTTTCTCAAGATaGAAGAAGACACAACCACCTAATGACCAATGTCTC | + |
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Preference number: 3 (lower is better) Translates to: KGRQELRVPFSR*KKTQPPNDQCL Trigger: GAGACATTGGTCATTAGGTGGTTGTGTCTTCTTCCATCTTGAGAAAGGGACCCTGAGTTCTTGCCTTCCCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| CDS-3UTR CCA 90 bp | CAGATTAGACCAGCTTTCCTCAGGAATAGAGAGGTCCACGAAGGGAAGGCAAGACTCAGCGCTCCGCAGTaGCTCGGCCCGGAGCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: QIRPAFLRNREVHEGKARLSAPQ*LGPEQE Trigger: CTCCTGCTCCGGGCCGAGCCACTGCGGAGCGCTGAG...TCTTGCCTTCCCTTCGTGGACCTCTCTATTCCTGAGGAAAGCTGGTCTAATCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| 3UTR CAA 72 bp | CCCTGGAGGTCCAGGCACTTGGAGTTCTCCTACAGATaGGATGCTAGATCACTGGCCTCCCGTAGTGACCAA | + |
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Preference number: 4 (lower is better) Translates to: PWRSRHLEFSYR*DARSLASRSDQ Trigger: TTGGTCACTACGGGAGGCCAGTGATCTAGCATCCAATCTGTAGGAGAACTCCAAGTGCCTGGACCTCCAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| CDS-3UTR CCA 90 bp | AGAGAGGTCCACGAAGGGAAGGCAAGAACTCAGGGTCCCTTTCTCAAGATGGAACCATGTCTGGGAGAATaGGGGGCTCGTCACCCACTT | + |
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Preference number: 4 (lower is better) Translates to: REVHEGKARTQGPFLKMEPCLGE*GARHPL Trigger: AAGTGGGTGACGAGCCCCCCATTCTCCCAGACATGG...TTCCATCTTGAGAAAGGGACCCTGAGTTCTTGCCTTCCCTTCGTGGACCTCTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| CDS-3UTR GCA 90 bp | CTAAACTGCCCTGGAGGTCCAGGCACTTGGAGTTCTCCTACAGATTGGATGCTAGAGAACTTCACGCCCTaGTCCACCTCTTCGTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: LNCPGGPGTWSSPTDWMLENFTP*STSSWK Trigger: CTTCCACGAAGAGGTGGAGCAGGGCGTGAAGTTCTC...TAGCATCCAATCTGTAGGAGAACTCCAAGTGCCTGGACCTCCAGGGCAGTTTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| 3UTR CAA 72 bp | TGGCAGAACCCTAAACTGCCCTGGAGGTCCAGGCACTaGGAGTTCTCCTACAGATTGGATGCTAGATCACTG | + |
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Preference number: 4 (lower is better) Translates to: WQNPKLPWRSRH*EFSYRLDARSL Trigger: CAGTGATCTAGCATCCAATCTGTAGGAGAACTCCAAGTGCCTGGACCTCCAGGGCAGTTTAGGGTTCTGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| CDS-3UTR TCA 90 bp | TGGCAGAACCCTAAACTGCCCTGGAGGTCCAGGCACTTGGAGTTCTCCTACAGATGGAGAACTCATTACTaGAGCAAAACCGGTAGACGC | + |
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Preference number: 4 (lower is better) Translates to: WQNPKLPWRSRHLEFSYRWRTHY*SKTGRR Trigger: GCGTCTACCGGTTTTGCTTCAGTAATGAGTTCTCCA...TCTGTAGGAGAACTCCAAGTGCCTGGACCTCCAGGGCAGTTTAGGGTTCTGCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| CDS-3UTR CCA 90 bp | CCACGAAGGGAAGGCAAGAACTCAGGGTCCCTTTCTCAAGATGGAAGAAGACACTTCAGCAGTAGCACCTaGCTGAAGCTGACCACAAAC | + |
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Preference number: 4 (lower is better) Translates to: PRREGKNSGSLSQDGRRHFSSST*LKLTTN Trigger: GTTTGTGGTCAGCTTCAGCCAGGTGCTACTGCTGAA...GTGTCTTCTTCCATCTTGAGAAAGGGACCCTGAGTTCTTGCCTTCCCTTCGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| 3UTR CAA 72 bp | GACATAGATCACCAAGGGCACTCACTCACTCTCTACTaGGGTCCTGGTTGTATGTCTGACCCTACTGTTTCC | + |
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Preference number: 4 (lower is better) Translates to: DIDHQGHSLTLY*GPGCMSDPTVS Trigger: GGAAACAGTAGGGTCAGACATACAACCAGGACCCAAGTAGAGAGTGAGTGAGTGCCCTTGGTGATCTATGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| CDS-3UTR CAA 90 bp | AGAGGTCCACGAAGGGAAGGCAAGAACTCAGGGTCCCTTTCTCAAGATGGAAGAGGGCTCGTCACCCACTaGGAAGTCAAAGTAGACGGT | + |
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Preference number: 5 (lower is better) Translates to: RGPRREGKNSGSLSQDGRGLVTH*EVKVDG Trigger: ACCGTCTACTTTGACTTCCAAGTGGGTGACGAGCCC...TCTTCCATCTTGAGAAAGGGACCCTGAGTTCTTGCCTTCCCTTCGTGGACCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| CDS-3UTR CAA 90 bp | AGAGAGGTCCACGAAGGGAAGGCAAGAACTCAGGGTCCCTTTCTCAAGATGGAACCCTTGGCCTCTGTCTaGTACGTGAAGCTGTCATAC | + |
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Preference number: 5 (lower is better) Translates to: REVHEGKARTQGPFLKMEPLASV*YVKLSY Trigger: GTATGACAGCTTCACGTACAAGACAGAGGCCAAGGG...TTCCATCTTGAGAAAGGGACCCTGAGTTCTTGCCTTCCCTTCGTGGACCTCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| CDS TCA 72 bp | AAAACCGGTAGACGCCCTTGGCCTCTGTCTTGTACGTaGAGCTGTCATACTGCTTCTTGGTCTCCCTGTAGA | + |
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Preference number: 6 (lower is better) Translates to: KTGRRPWPLSCT*SCHTASWSPCR Trigger: TCTACAGGGAGACCAAGAAGCAGTATGACAGCTTCACGTACAAGACAGAGGCCAAGGGCGTCTACCGGTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| CDS TCA 72 bp | AGACGGTCTTATGAGAGAAGGTGGAGAACTCATTACTaGAGCAAAACCGGTAGACGCCCTTGGCCTCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: RRSYERRWRTHY*SKTGRRPWPLS Trigger: AGACAGAGGCCAAGGGCGTCTACCGGTTTTGCTTCAGTAATGAGTTCTCCACCTTCTCTCATAAGACCGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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| CDS CCA 72 bp | CGCTTTTCTGTAAAGAAGCTTTTCAGCAGTAGCACCTaGCTGAAGCTGACCACAAACAGGGCAATAGTCTCG | + |
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Preference number: 6 (lower is better) Translates to: RFSVKKLFSSST*LKLTTNRAIVS Trigger: CGAGACTATTGCCCTGTTTGTGGTCAGCTTCAGCCAGGTGCTACTGCTGAAAAGCTTCTTTACAGAAAAGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058488.9 |
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