Pregenerated sensors for TMED2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029390Ensembl transcript IDs: ENSMUST00000060226.11, ENSMUST00000124529.8, ENSMUST00000135464.2, ENSMUST00000200031.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGAAGAGTTTTGATGAGTCTTTAAATCGAGCTCAAGAGAAAGCATaGGTGCCCACCCTGGTAACAGGCCCCATCAGGACTCTCCACCCT | + |
|
Preference number: 1 (lower is better) Translates to: GKSFDESLNRAQEKA*VPTLVTGPIRTLHP Trigger: AGGGTGGAGAGTCCTGATGGGGCCTGTTACCAGGGTGGGCACTCATGCTTTCTCTTGAGCTCGATTTAAAGACTCATCAAAACTCTTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR CCA 90 bp | CTCTGCAGCACACAGGACAGCAGTCTGTTCCAACACCTGGGAAACTaGATTCAAAGAACGGCTAAGTTATTGGCTGCTTGTTCAATTCAA | + |
|
Preference number: 1 (lower is better) Translates to: LCSTQDSSLFQHLGN*IQRTAKLLAACSIQ Trigger: TTGAATTGAACAAGCAGCCAATAACTTAGCCGTTCTTTGAATCCAGTTTCCCAGGTGTTGGAACAGACTGCTGTCCTGTGTGCTGCAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR-3UTR CCA 90 bp | TCGAGCTCAAGAGAAAGCATGAGTGCCCACCCTGGTAACAGGCCCCATCAGGACAGTATTGTCAGGCTGTaGGCTACTTCCTGGATGAAC | + |
|
Preference number: 2 (lower is better) Translates to: SSSRESMSAHPGNRPHQDSIVRL*ATSWMN Trigger: GTTCATCCAGGAAGTAGCCCACAGCCTGACAATACT...GTCCTGATGGGGCCTGTTACCAGGGTGGGCACTCATGCTTTCTCTTGAGCTCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR-3UTR CCA 90 bp | CTGACACTGAAGACCAGGGCCCAAAGGCCACTGACTAAAAAGACATCAGTGGCTCAGCCTCTGGATTCTTaGAAGGGCCTATATAATGGG | + |
|
Preference number: 2 (lower is better) Translates to: LTLKTRAQRPLTKKTSVAQPLDS*KGLYNG Trigger: CCCATTATATAGGCCCTTCCAAGAATCCAGAGGCTG...AGCCACTGATGTCTTTTTAGTCAGTGGCCTTTGGGCCCTGGTCTTCAGTGTCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR-3UTR CCA 90 bp | GATCTTCCTAAGTGCCAACAAGGGACAGACTCTGCAGCACACAGGACAGCAGTCAGCATTAACAGCCTCTaGATTCTTGGAAGGGCCTAT | + |
|
Preference number: 2 (lower is better) Translates to: DLPKCQQGTDSAAHRTAVSINSL*ILGRAY Trigger: ATAGGCCCTTCCAAGAATCCAGAGGCTGTTAATGCT...GACTGCTGTCCTGTGTGCTGCAGAGTCTGTCCCTTGTTGGCACTTAGGAAGATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR-3UTR TCA 90 bp | CTGACACTGAAGACCAGGGCCCAAAGGCCACTGACTAAAAAGACATCAGTGGCTCTTAATCCTTCTGCTTaGGAAGTGCAGACTTCCAGT | + |
|
Preference number: 2 (lower is better) Translates to: LTLKTRAQRPLTKKTSVALNPSA*EVQTSS Trigger: ACTGGAAGTCTGCACTTCTCAAGCAGAAGGATTAAG...AGCCACTGATGTCTTTTTAGTCAGTGGCCTTTGGGCCCTGGTCTTCAGTGTCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR-3UTR TCA 90 bp | CACCCTGAGGCGGGGCCACAGGGTCAAGATTCAGATTGCTGTTGCTGTAATAACGGGCTACTTCCTGGATaGACTGCATTTTATTATGAA | + |
|
Preference number: 2 (lower is better) Translates to: HPEAGPQGQDSDCCCCNNGLLPG*TAFYYE Trigger: TTCATAATAAAATGCAGTTCATCCAGGAAGTAGCCC...GTTATTACAGCAACAGCAATCTGAATCTTGACCCTGTGGCCCCGCCTCAGGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR-3UTR TCA 90 bp | CTTCCATGTACTCCTGTTCGTGCTTTACGGCTGTCATTGCCACTGCCAGCTCATCCCCAATGTCAATGGTaGACATTACTATCTTTGGAG | + |
|
Preference number: 2 (lower is better) Translates to: LPCTPVRALRLSLPLPAHPQCQW*TLLSLE Trigger: CTCCAAAGATAGTAATGTTCACCATTGACATTGGGG...ATGAGCTGGCAGTGGCAATGACAGCCGTAAAGCACGAACAGGAGTACATGGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200031.2 |
||
| 3UTR-3UTR CCA 90 bp | CCCACACCCAAAGCAGAGTGCCTTTCATTAAACCCATCATCAGAGAGACAGTCTCAGCCTCTGGATTCTTaGAAGGGCCTATATAATGGG | + |
|
Preference number: 2 (lower is better) Translates to: PTPKAECLSLNPSSERQSQPLDS*KGLYNG Trigger: CCCATTATATAGGCCCTTCCAAGAATCCAGAGGCTG...AGACTGTCTCTCTGATGATGGGTTTAATGAAAGGCACTCTGCTTTGGGTGTGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR-3UTR CCA 90 bp | AAACAAACCCTAGTGCTGACACTGAAGACCAGGGCCCAAAGGCCACTGACTAAAAGCATTAACAGCCTCTaGATTCTTGGAAGGGCCTAT | + |
|
Preference number: 2 (lower is better) Translates to: KQTLVLTLKTRAQRPLTKSINSL*ILGRAY Trigger: ATAGGCCCTTCCAAGAATCCAGAGGCTGTTAATGCT...TTTAGTCAGTGGCCTTTGGGCCCTGGTCTTCAGTGTCAGCACTAGGGTTTGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR-3UTR CCA 90 bp | CCCACACCCAAAGCAGAGTGCCTTTCATTAAACCCATCATCAGAGAGACAGTCTAGTATTGTCAGGCTGTaGGCTACTTCCTGGATGAAC | + |
|
Preference number: 2 (lower is better) Translates to: PTPKAECLSLNPSSERQSSIVRL*ATSWMN Trigger: GTTCATCCAGGAAGTAGCCCACAGCCTGACAATACT...AGACTGTCTCTCTGATGATGGGTTTAATGAAAGGCACTCTGCTTTGGGTGTGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR-3UTR TCA 90 bp | CTGACACTGAAGACCAGGGCCCAAAGGCCACTGACTAAAAAGACATCAGTGGCTGCTGTAATAACAAAATaGGCCTCTGATGATGAACCA | + |
|
Preference number: 2 (lower is better) Translates to: LTLKTRAQRPLTKKTSVAAVITK*ASDDEP Trigger: TGGTTCATCATCAGAGGCTCATTTTGTTATTACAGC...AGCCACTGATGTCTTTTTAGTCAGTGGCCTTTGGGCCCTGGTCTTCAGTGTCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR-3UTR CCA 90 bp | CTGACACTGAAGACCAGGGCCCAAAGGCCACTGACTAAAAAGACATCAGTGGCTCTGTGGGCTACTTCCTaGATGAACTGCATTTTATTA | + |
|
Preference number: 2 (lower is better) Translates to: LTLKTRAQRPLTKKTSVALWATS*MNCILL Trigger: TAATAAAATGCAGTTCATCCAGGAAGTAGCCCACAG...AGCCACTGATGTCTTTTTAGTCAGTGGCCTTTGGGCCCTGGTCTTCAGTGTCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR-3UTR CCA 90 bp | CCCACACCCAAAGCAGAGTGCCTTTCATTAAACCCATCATCAGAGAGACAGTCTCAACACCTGGGAAACTaGATTCAAAGAACGGCTAAG | + |
|
Preference number: 2 (lower is better) Translates to: PTPKAECLSLNPSSERQSQHLGN*IQRTAK Trigger: CTTAGCCGTTCTTTGAATCCAGTTTCCCAGGTGTTG...AGACTGTCTCTCTGATGATGGGTTTAATGAAAGGCACTCTGCTTTGGGTGTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR-3UTR GCA 90 bp | GATCTTCCTAAGTGCCAACAAGGGACAGACTCTGCAGCACACAGGACAGCAGTCGATTCAGATTGCTGTTaGTGTAATAACAAAATGAGC | + |
|
Preference number: 2 (lower is better) Translates to: DLPKCQQGTDSAAHRTAVDSDCC*CNNKMS Trigger: GCTCATTTTGTTATTACAGCAACAGCAATCTGAATC...GACTGCTGTCCTGTGTGCTGCAGAGTCTGTCCCTTGTTGGCACTTAGGAAGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR-3UTR TCA 90 bp | CCCACACCCAAAGCAGAGTGCCTTTCATTAAACCCATCATCAGAGAGACAGTCTGCTGTAATAACAAAATaGGCCTCTGATGATGAACCA | + |
|
Preference number: 2 (lower is better) Translates to: PTPKAECLSLNPSSERQSAVITK*ASDDEP Trigger: TGGTTCATCATCAGAGGCTCATTTTGTTATTACAGC...AGACTGTCTCTCTGATGATGGGTTTAATGAAAGGCACTCTGCTTTGGGTGTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR-3UTR CCA 90 bp | CCCACACCCAAAGCAGAGTGCCTTTCATTAAACCCATCATCAGAGAGACAGTCTGAACGGCTAAGTTATTaGCTGCTTGTTCAATTCAAT | + |
|
Preference number: 2 (lower is better) Translates to: PTPKAECLSLNPSSERQSERLSY*LLVQFN Trigger: ATTGAATTGAACAAGCAGCCAATAACTTAGCCGTTC...AGACTGTCTCTCTGATGATGGGTTTAATGAAAGGCACTCTGCTTTGGGTGTGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR-3UTR GCA 90 bp | CCCACACCCAAAGCAGAGTGCCTTTCATTAAACCCATCATCAGAGAGACAGTCTGATTCAGATTGCTGTTaGTGTAATAACAAAATGAGC | + |
|
Preference number: 2 (lower is better) Translates to: PTPKAECLSLNPSSERQSDSDCC*CNNKMS Trigger: GCTCATTTTGTTATTACAGCAACAGCAATCTGAATC...AGACTGTCTCTCTGATGATGGGTTTAATGAAAGGCACTCTGCTTTGGGTGTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR TCA 72 bp | CACCCTGGTAACAGGCCCCATCAGGACTCTCCACCCTaGGGCGGGGCCACAGGGTCAAGATTCAGATTGCTG | + |
|
Preference number: 3 (lower is better) Translates to: HPGNRPHQDSPP*GGATGSRFRLL Trigger: CAGCAATCTGAATCTTGACCCTGTGGCCCCGCCTCAGGGTGGAGAGTCCTGATGGGGCCTGTTACCAGGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR-3UTR CAA 90 bp | TTCCATGTACTCCTGTTCGTGCTTTACGGCTGTCATTGCCACTGCCAGCTCATTTTCTGTCTCCATGTCTaGTCCTTTGGGAGCCTCCCC | + |
|
Preference number: 3 (lower is better) Translates to: FHVLLFVLYGCHCHCQLIFCLHV*SFGSLP Trigger: GGGGAGGCTCCCAAAGGACAAGACATGGAGACAGAA...AATGAGCTGGCAGTGGCAATGACAGCCGTAAAGCACGAACAGGAGTACATGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200031.2 |
||
| 3UTR TCA 72 bp | CACTGCAAGCAACCCCAGAGGCTTAATCCTTCTGCTTaGGAAGTGCAGACTTCCAGTGAGGGAGAAACTGGA | + |
|
Preference number: 3 (lower is better) Translates to: HCKQPQRLNPSA*EVQTSSEGETG Trigger: TCCAGTTTCTCCCTCACTGGAAGTCTGCACTTCTCAAGCAGAAGGATTAAGCCTCTGGGGTTGCTTGCAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR GCA 72 bp | AGACTTCCAGTGAGGGAGAAACTGGATCTTCCTAAGTaGCAACAAGGGACAGACTCTGCAGCACACAGGACA | + |
|
Preference number: 3 (lower is better) Translates to: RLPVREKLDLPK*QQGTDSAAHRT Trigger: TGTCCTGTGTGCTGCAGAGTCTGTCCCTTGTTGGCACTTAGGAAGATCCAGTTTCTCCCTCACTGGAAGTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR GCA 72 bp | AGCAACCCCAGAGGCTTAATCCTTCTGCTTGAGAAGTaGAGACTTCCAGTGAGGGAGAAACTGGATCTTCCT | + |
|
Preference number: 3 (lower is better) Translates to: SNPRGLILLLEK*RLPVREKLDLP Trigger: AGGAAGATCCAGTTTCTCCCTCACTGGAAGTCTGCACTTCTCAAGCAGAAGGATTAAGCCTCTGGGGTTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR GCA 72 bp | TGTATTCTCTCCCGGACTTCCATGTACTCCTGTTCGTaGTTTACGGCTGTCATTGCCACTGCCAGCTCATTA | + |
|
Preference number: 3 (lower is better) Translates to: CILSRTSMYSCS*FTAVIATASSL Trigger: TAATGAGCTGGCAGTGGCAATGACAGCCGTAAAGCACGAACAGGAGTACATGGAAGTCCGGGAGAGAATACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200031.2 |
||
| 3UTR TCA 72 bp | TTTGATGAGTCTTTAAATCGAGCTCAAGAGAAAGCATaGGTGCCCACCCTGGTAACAGGCCCCATCAGGACT | + |
|
Preference number: 3 (lower is better) Translates to: FDESLNRAQEKA*VPTLVTGPIRT Trigger: AGTCCTGATGGGGCCTGTTACCAGGGTGGGCACTCATGCTTTCTCTTGAGCTCGATTTAAAGACTCATCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| CDS-3UTR GCA 90 bp | GATCTTCCTAAGTGCCAACAAGGGACAGACTCTGCAGCACACAGGACAGCAGTCAAGCACTCCTCGGCGTaGGCGTCGATGCTGACAAAG | + |
|
Preference number: 4 (lower is better) Translates to: DLPKCQQGTDSAAHRTAVKHSSA*ASMLTK Trigger: CTTTGTCAGCATCGACGCGCACGCCGAGGAGTGCTT...GACTGCTGTCCTGTGTGCTGCAGAGTCTGTCCCTTGTTGGCACTTAGGAAGATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060226.11 |
||
| CDS-3UTR TCA 90 bp | AGCATTAACAGCCTCTGGATTCTTGGAAGGGCCTATATAATGGGGCTCCTTTCACGTGCGCGTCGATGCTaGCAAAGTAGCCCGAGGCCG | + |
|
Preference number: 4 (lower is better) Translates to: SINSLWILGRAYIMGLLSRARRC*QSSPRP Trigger: CGGCCTCGGGCTACTTTGTCAGCATCGACGCGCACG...TGAAAGGAGCCCCATTATATAGGCCCTTCCAAGAATCCAGAGGCTGTTAATGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060226.11 |
||
| CDS-3UTR GCA 90 bp | CTGACACTGAAGACCAGGGCCCAAAGGCCACTGACTAAAAAGACATCAGTGGCTGGCTGTCATTGCCACTaGCAGCTCATTAATCATTTC | + |
|
Preference number: 4 (lower is better) Translates to: LTLKTRAQRPLTKKTSVAGCHCH*QLINHF Trigger: GAAATGATTAATGAGCTGGCAGTGGCAATGACAGCC...AGCCACTGATGTCTTTTTAGTCAGTGGCCTTTGGGCCCTGGTCTTCAGTGTCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| CDS-3UTR CCA 90 bp | ACTTCCATGTACTCCTGTTCGTGCTTTACGGCTGTCATTGCCACTGCCAGCTCATATGTCCCATCCATGTaGGCTGCAAATGTGTACTTC | + |
|
Preference number: 4 (lower is better) Translates to: TSMYSCSCFTAVIATASSYVPSM*AANVYF Trigger: GAAGTACACATTTGCAGCCCACATGGATGGGACATA...TGAGCTGGCAGTGGCAATGACAGCCGTAAAGCACGAACAGGAGTACATGGAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200031.2 |
||
| CDS-3UTR GCA 90 bp | AAACAAACCCTAGTGCTGACACTGAAGACCAGGGCCCAAAGGCCACTGACTAAAGGCTGTCATTGCCACTaGCAGCTCATTAATCATTTC | + |
|
Preference number: 4 (lower is better) Translates to: KQTLVLTLKTRAQRPLTKGCHCH*QLINHF Trigger: GAAATGATTAATGAGCTGGCAGTGGCAATGACAGCC...TTTAGTCAGTGGCCTTTGGGCCCTGGTCTTCAGTGTCAGCACTAGGGTTTGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| CDS-3UTR TCA 90 bp | AGCATTAACAGCCTCTGGATTCTTGGAAGGGCCTATATAATGGGGCTCCTTTCACCCCAATGTCAATGGTaGACATTACTATCTTTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: SINSLWILGRAYIMGLLSPQCQW*TLLSLE Trigger: CTCCAAAGATAGTAATGTTCACCATTGACATTGGGG...TGAAAGGAGCCCCATTATATAGGCCCTTCCAAGAATCCAGAGGCTGTTAATGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| CDS-3UTR CCA 90 bp | TGTTCCAACACCTGGGAAACTGGATTCAAAGAACGGCTAAGTTATTGGCTGCTTTATGTCCCATCCATGTaGGCTGCAAATGTGTACTTC | + |
|
Preference number: 4 (lower is better) Translates to: CSNTWETGFKERLSYWLLYVPSM*AANVYF Trigger: GAAGTACACATTTGCAGCCCACATGGATGGGACATA...AAGCAGCCAATAACTTAGCCGTTCTTTGAATCCAGTTTCCCAGGTGTTGGAACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060226.11 |
||
| CDS-3UTR TCA 90 bp | TGTTCCAACACCTGGGAAACTGGATTCAAAGAACGGCTAAGTTATTGGCTGCTTTGTTTGTGTTGTCATTaGTGGCTCTGTGTATTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: CSNTWETGFKERLSYWLLCLCCH*WLCVFS Trigger: AGAGAATACACAGAGCCATCAATGACAACACAAACA...AAGCAGCCAATAACTTAGCCGTTCTTTGAATCCAGTTTCCCAGGTGTTGGAACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| CDS-3UTR GCA 90 bp | CTCTGGATTCTTGGAAGGGCCTATATAATGGGGCTCCTTTCAAGTAAGAATTATCTTTACGGCTGTCATTaGCACTGCCAGCTCATTAAT | + |
|
Preference number: 4 (lower is better) Translates to: LWILGRAYIMGLLSSKNYLYGCH*HCQLIN Trigger: ATTAATGAGCTGGCAGTGGCAATGACAGCCGTAAAG...ATAATTCTTACTTGAAAGGAGCCCCATTATATAGGCCCTTCCAAGAATCCAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| CDS-3UTR GCA 90 bp | ATGAACCAAGGGACTACTAGAATGCAGTTAGTTAACAAGTATTGTCAGGCTGTGCTTTACGGCTGTCATTaGCACTGCCAGCTCATTAAT | + |
|
Preference number: 4 (lower is better) Translates to: MNQGTTRMQLVNKYCQAVLYGCH*HCQLIN Trigger: ATTAATGAGCTGGCAGTGGCAATGACAGCCGTAAAG...CACAGCCTGACAATACTTGTTAACTAACTGCATTCTAGTAGTCCCTTGGTTCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| 3UTR CAA 72 bp | CACCTGGGAAACTGGATTCAAAGAACGGCTAAGTTATaGGCTGCTTGTTCAATTCAATTAGAGGTGATTCAG | + |
|
Preference number: 4 (lower is better) Translates to: HLGNWIQRTAKL*AACSIQLEVIQ Trigger: CTGAATCACCTCTAATTGAATTGAACAAGCAGCCAATAACTTAGCCGTTCTTTGAATCCAGTTTCCCAGGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| CDS-3UTR TCA 90 bp | CTCTGGATTCTTGGAAGGGCCTATATAATGGGGCTCCTTTCAAGTAAGAATTATCCCCAATGTCAATGGTaGACATTACTATCTTTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: LWILGRAYIMGLLSSKNYPQCQW*TLLSLE Trigger: CTCCAAAGATAGTAATGTTCACCATTGACATTGGGG...ATAATTCTTACTTGAAAGGAGCCCCATTATATAGGCCCTTCCAAGAATCCAGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| CDS-3UTR TCA 90 bp | CTCTGGATTCTTGGAAGGGCCTATATAATGGGGCTCCTTTCAAGTAAGAATTATTGTTTGTGTTGTCATTaGTGGCTCTGTGTATTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: LWILGRAYIMGLLSSKNYCLCCH*WLCVFS Trigger: AGAGAATACACAGAGCCATCAATGACAACACAAACA...ATAATTCTTACTTGAAAGGAGCCCCATTATATAGGCCCTTCCAAGAATCCAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| CDS CCA 90 bp | CTTCCCGCTGGACTCCCGGTCTCCTTTATAGATTCCTTTATTATCTaGTCCTGTGATTCGGCAAAGTTTGTTTCCGCGCCACGCCGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: LPAGLPVSFIDSFII*SCDSAKFVSAPRRP Trigger: GGGGCGGCGTGGCGCGGAAACAAACTTTGCCGAATCACAGGACCAGATAATAAAGGAATCTATAAAGGAGACCGGGAGTCCAGCGGGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124529.8 |
||
| CDS-3UTR CAA 90 bp | CACCCTGAGGCGGGGCCACAGGGTCAAGATTCAGATTGCTGTTGCTGTAATAACTTCTGTCTCCATGTCTaGTCCTTTGGGAGCCTCCCC | + |
|
Preference number: 5 (lower is better) Translates to: HPEAGPQGQDSDCCCCNNFCLHV*SFGSLP Trigger: GGGGAGGCTCCCAAAGGACAAGACATGGAGACAGAA...GTTATTACAGCAACAGCAATCTGAATCTTGACCCTGTGGCCCCGCCTCAGGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| CDS-3UTR CAA 90 bp | CACCCTGAGGCGGGGCCACAGGGTCAAGATTCAGATTGCTGTTGCTGTAATAACACTCTGCTGTTTGTGTaGTCATTGATGGCTCTGTGT | + |
|
Preference number: 5 (lower is better) Translates to: HPEAGPQGQDSDCCCCNNTLLFV*SLMALC Trigger: ACACAGAGCCATCAATGACAACACAAACAGCAGAGT...GTTATTACAGCAACAGCAATCTGAATCTTGACCCTGTGGCCCCGCCTCAGGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| CDS-3UTR CAA 90 bp | GATCTTCCTAAGTGCCAACAAGGGACAGACTCTGCAGCACACAGGACAGCAGTCACTCTGCTGTTTGTGTaGTCATTGATGGCTCTGTGT | + |
|
Preference number: 5 (lower is better) Translates to: DLPKCQQGTDSAAHRTAVTLLFV*SLMALC Trigger: ACACAGAGCCATCAATGACAACACAAACAGCAGAGT...GACTGCTGTCCTGTGTGCTGCAGAGTCTGTCCCTTGTTGGCACTTAGGAAGATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| CDS-3UTR CAA 90 bp | ACTTCCATGTACTCCTGTTCGTGCTTTACGGCTGTCATTGCCACTGCCAGCTCATTGCTAAAGCAGAACTaGTATGTCCCATCCATGTGG | + |
|
Preference number: 5 (lower is better) Translates to: TSMYSCSCFTAVIATASSLLKQN*YVPSMW Trigger: CCACATGGATGGGACATACAAGTTCTGCTTTAGCAA...TGAGCTGGCAGTGGCAATGACAGCCGTAAAGCACGAACAGGAGTACATGGAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200031.2 |
||
| CDS-3UTR CAA 90 bp | GATCTTCCTAAGTGCCAACAAGGGACAGACTCTGCAGCACACAGGACAGCAGTCCTGTTTGTGTTGTCATaGATGGCTCTGTGTATTCTC | + |
|
Preference number: 5 (lower is better) Translates to: DLPKCQQGTDSAAHRTAVLFVLS*MALCIL Trigger: GAGAATACACAGAGCCATCAATGACAACACAAACAG...GACTGCTGTCCTGTGTGCTGCAGAGTCTGTCCCTTGTTGGCACTTAGGAAGATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000135464.2 |
||
| CDS-3UTR CAA 90 bp | TGTTCCAACACCTGGGAAACTGGATTCAAAGAACGGCTAAGTTATTGGCTGCTTTTGCTAAAGCAGAACTaGTATGTCCCATCCATGTGG | + |
|
Preference number: 5 (lower is better) Translates to: CSNTWETGFKERLSYWLLLLKQN*YVPSMW Trigger: CCACATGGATGGGACATACAAGTTCTGCTTTAGCAA...AAGCAGCCAATAACTTAGCCGTTCTTTGAATCCAGTTTCCCAGGTGTTGGAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060226.11 |
||
| CDS-3UTR CAA 90 bp | TACTCCTGTTCGTGCTTTACGGCTGTCATTGCCACTGCCAGCTCATTAATCATTATAGTGGACATCCTATaGCTAAAGCAGAACTTGTAT | + |
|
Preference number: 5 (lower is better) Translates to: YSCSCFTAVIATASSLIIIVDIL*LKQNLY Trigger: ATACAAGTTCTGCTTTAGCAATAGGATGTCCACTAT...AATGATTAATGAGCTGGCAGTGGCAATGACAGCCGTAAAGCACGAACAGGAGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200031.2 |
||
| CDS-3UTR CAA 90 bp | TGTTCCAACACCTGGGAAACTGGATTCAAAGAACGGCTAAGTTATTGGCTGCTTATAGTGGACATCCTATaGCTAAAGCAGAACTTGTAT | + |
|
Preference number: 5 (lower is better) Translates to: CSNTWETGFKERLSYWLLIVDIL*LKQNLY Trigger: ATACAAGTTCTGCTTTAGCAATAGGATGTCCACTAT...AAGCAGCCAATAACTTAGCCGTTCTTTGAATCCAGTTTCCCAGGTGTTGGAACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060226.11 |
||
| CDS TCA 72 bp | GCTCGAAGAAGCACTCCTCGGCGTGCGCGTCGATGCTaGCAAAGTAGCCCGAGGCCGTGGCCAGCAGCGCGG | + |
|
Preference number: 6 (lower is better) Translates to: ARRSTPRRARRC*QSSPRPWPAAR Trigger: CCGCGCTGCTGGCCACGGCCTCGGGCTACTTTGTCAGCATCGACGCGCACGCCGAGGAGTGCTTCTTCGAGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060226.11 |
||
| CDS GCA 72 bp | ATTCGGCAAAGTTTGTTTCCGCGCCACGCCGCCCCGTaGGAGCCCTGGAGGGACCGAGGAGAACCACGCCGA | + |
|
Preference number: 6 (lower is better) Translates to: IRQSLFPRHAAP*EPWRDRGEPRR Trigger: TCGGCGTGGTTCTCCTCGGTCCCTCCAGGGCTCGCACGGGGCGGCGTGGCGCGGAAACAAACTTTGCCGAAT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124529.8 |
||
| CDS CAA 72 bp | ATTCCTTTATTATCTGGTCCTGTGATTCGGCAAAGTTaGTTTCCGCGCCACGCCGCCCCGTGCGAGCCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: IPLLSGPVIRQS*FPRHAAPCEPW Trigger: CCAGGGCTCGCACGGGGCGGCGTGGCGCGGAAACAAACTTTGCCGAATCACAGGACCAGATAATAAAGGAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124529.8 |
||
| CDS CCA 72 bp | GGACTCCCGGTCTCCTTTATAGATTCCTTTATTATCTaGTCCTGTGATCTCCACGTCGATGTCCAGGAAGCC | + |
|
Preference number: 6 (lower is better) Translates to: GLPVSFIDSFII*SCDLHVDVQEA Trigger: GGCTTCCTGGACATCGACGTGGAGATCACAGGACCAGATAATAAAGGAATCTATAAAGGAGACCGGGAGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060226.11 ENSMUST00000200031.2 |
||