Pregenerated sensors for TMED11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000004821

Ensembl transcript IDs: ENSMUST00000004943.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GTCCCACTGCTGTACCTTGAATGTCCCTGTTATCAATGTATCACTTaGAATGTCTTCAATTATACATTTCTCCTCTCGCTCTCCAGCATG	+
Preference number: 5 (lower is better) Translates to: VPLLYLECPCYQCIT*NVFNYTFLLSLSSM Trigger: CATGCTGGAGAGCGAGAGGAGAAATGTATAATTGAAGACATTCCAAGTGATACATTGATAACAGGGACATTCAAGGTACAGCAGTGGGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004943.2
CDS CCA 90 bp	ACAATAGCTGCATCAAGGTCATGTTCTCCAACTCGAATATCTAAGTaGATGCGCAGCTTACTTCCTCCAAATGACACAAACTGTGTAGAA	+
Preference number: 5 (lower is better) Translates to: TIAASRSCSPTRISK*MRSLLPPNDTNCVE Trigger: TTCTACACAGTTTGTGTCATTTGGAGGAAGTAAGCTGCGCATCCACTTAGATATTCGAGTTGGAGAACATGACCTTGATGCAGCTATTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004943.2
CDS CCA 72 bp	GCATCAAGGTCATGTTCTCCAACTCGAATATCTAAGTaGATGCGCAGCTTACTTCCTCCAAATGACACAAAC	+
Preference number: 6 (lower is better) Translates to: ASRSCSPTRISK*MRSLLPPNDTN Trigger: GTTTGTGTCATTTGGAGGAAGTAAGCTGCGCATCCACTTAGATATTCGAGTTGGAGAACATGACCTTGATGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004943.2
CDS GCA 72 bp	GCAGATTCAAGGAAGTCATGTCTGACTATGTCCCACTaGTGTACCTTGAATGTCCCTGTTATCAATGTATCA	+
Preference number: 6 (lower is better) Translates to: ADSRKSCLTMSH*CTLNVPVINVS Trigger: TGATACATTGATAACAGGGACATTCAAGGTACAGCAGTGGGACATAGTCAGACATGACTTCCTTGAATCTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004943.2
CDS CAA 72 bp	AGGAAGTCATGTCTGACTATGTCCCACTGCTGTACCTaGAATGTCCCTGTTATCAATGTATCACTTGGAATG	+
Preference number: 6 (lower is better) Translates to: RKSCLTMSHCCT*NVPVINVSLGM Trigger: CATTCCAAGTGATACATTGATAACAGGGACATTCAAGGTACAGCAGTGGGACATAGTCAGACATGACTTCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004943.2
CDS TCA 72 bp	AGCTTGAAGGTTACTTCATTAACTTTATCCTTTGCTTaGACAATAGCTGCATCAAGGTCATGTTCTCCAACT	+
Preference number: 6 (lower is better) Translates to: SLKVTSLTLSFA*TIAASRSCSPT Trigger: AGTTGGAGAACATGACCTTGATGCAGCTATTGTTCAAGCAAAGGATAAAGTTAATGAAGTAACCTTCAAGCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004943.2
CDS CCA 72 bp	AAGCCCACCATAAAACATTTCTATTGGTATCTTCACTaGTTATACGGAAATTTTCTTCACGGTCCCTTTGAT	+
Preference number: 6 (lower is better) Translates to: KPTIKHFYWYLH*LYGNFLHGPFD Trigger: ATCAAAGGGACCGTGAAGAAAATTTCCGTATAACCAGTGAAGATACCAATAGAAATGTTTTATGGTGGGCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004943.2
CDS CAA 72 bp	AAGCTTGAAGGTTACTTCATTAACTTTATCCTTTGCTaGAACAATAGCTGCATCAAGGTCATGTTCTCCAAC	+
Preference number: 6 (lower is better) Translates to: KLEGYFINFILC*NNSCIKVMFSN Trigger: GTTGGAGAACATGACCTTGATGCAGCTATTGTTCAAGCAAAGGATAAAGTTAATGAAGTAACCTTCAAGCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004943.2
CDS TCA 72 bp	AATTTTCTTCACGGTCCCTTTGATAGTCTTGTTCTTTaGGTATTTGCTCCACTTGTTCAATTAGATGTTGAA	+
Preference number: 6 (lower is better) Translates to: NFLHGPFDSLVL*VFAPLVQLDVE Trigger: TTCAACATCTAATTGAACAAGTGGAGCAAATACTCAAAGAACAAGACTATCAAAGGGACCGTGAAGAAAATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004943.2

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