Pregenerated sensors for TMED10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021248Ensembl transcript IDs: ENSMUST00000040766.9
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GAGACAACTGATATGAAAGAGCTGACCGCAGTCAGAGAAATCTTGGGAGGAGAAGTACTGTTAGTAGAATaGCCTTGGGCTAGGCCAGGC | + |
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Preference number: 2 (lower is better) Translates to: ETTDMKELTAVREILGGEVLLVE*PWARPG Trigger: GCCTGGCCTAGCCCAAGGCCATTCTACTAACAGTAC...TTCTCCTCCCAAGATTTCTCTGACTGCGGTCAGCTCTTTCATATCAGTTGTCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040766.9 |
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| 3UTR-3UTR CCA 90 bp | ACTGATATGAAAGAGCTGACCGCAGTCAGAGAAATCTTGGGAGGAGAACTAGAGAAGGCGATGAGCAGGTaGGAGAGAAAAAGCAAACAG | + |
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Preference number: 2 (lower is better) Translates to: TDMKELTAVREILGGELEKAMSR*ERKSKQ Trigger: CTGTTTGCTTTTTCTCTCCCACCTGCTCATCGCCTT...CTCTAGTTCTCCTCCCAAGATTTCTCTGACTGCGGTCAGCTCTTTCATATCAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040766.9 |
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| 3UTR-3UTR CCA 90 bp | ACTGATATGAAAGAGCTGACCGCAGTCAGAGAAATCTTGGGAGGAGAACTAGAGCAAAAGTATCAGTTCTaGCAAGAAAGCTCAGCTGTG | + |
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Preference number: 2 (lower is better) Translates to: TDMKELTAVREILGGELEQKYQF*QESSAV Trigger: CACAGCTGAGCTTTCTTGCCAGAACTGATACTTTTG...CTCTAGTTCTCCTCCCAAGATTTCTCTGACTGCGGTCAGCTCTTTCATATCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040766.9 |
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| 3UTR-3UTR GCA 90 bp | AGAAGTTCAAGGTGTTTTCACAAGGAAACCAAAGAGACAACTGATATGAAAGAGCAGTCCAAATCCTACTaGATTAAAGTCCTCATTGAC | + |
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Preference number: 2 (lower is better) Translates to: RSSRCFHKETKETTDMKEQSKSY*IKVLID Trigger: GTCAATGAGGACTTTAATGCAGTAGGATTTGGACTG...CTCTTTCATATCAGTTGTCTCTTTGGTTTCCTTGTGAAAACACCTTGAACTTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040766.9 |
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| 3UTR TCA 72 bp | TGGGAGAGAAAAAGCAAACAGCTCAAACAGATCCTGTaGGGCGGGCGACCCAGGACGAAGGCTGGCTTTGGC | + |
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Preference number: 3 (lower is better) Translates to: WERKSKQLKQIL*GGRPRTKAGFG Trigger: GCCAAAGCCAGCCTTCGTCCTGGGTCGCCCGCCTCACAGGATCTGTTTGAGCTGTTTGCTTTTTCTCTCCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040766.9 |
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| 3UTR-3UTR CAA 90 bp | ACTGATATGAAAGAGCTGACCGCAGTCAGAGAAATCTTGGGAGGAGAACTAGAGGCGACTTTAATAATCTaGTTGCAAAACCAGTCCAAA | + |
|
Preference number: 3 (lower is better) Translates to: TDMKELTAVREILGGELEATLII*LQNQSK Trigger: TTTGGACTGGTTTTGCAACAAGATTATTAAAGTCGC...CTCTAGTTCTCCTCCCAAGATTTCTCTGACTGCGGTCAGCTCTTTCATATCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040766.9 |
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| CDS-3UTR TCA 90 bp | AGAAGTTCAAGGTGTTTTCACAAGGAAACCAAAGAGACAACTGATATGAAAGAGCCCCAGACTGGTCGGTaGTCTCGTAGGCGCCCGTCA | + |
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Preference number: 4 (lower is better) Translates to: RSSRCFHKETKETTDMKEPQTGR*SRRRPS Trigger: TGACGGGCGCCTACGAGATCACCGACCAGTCTGGGG...CTCTTTCATATCAGTTGTCTCTTTGGTTTCCTTGTGAAAACACCTTGAACTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040766.9 |
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| CDS-3UTR TCA 90 bp | GAGACAACTGATATGAAAGAGCTGACCGCAGTCAGAGAAATCTTGGGAGGAGAAACATGGAAAAGATGCTaGAGTACAGGACCCGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: ETTDMKELTAVREILGGETWKRC*STGPGC Trigger: ACACCCGGGTCCTGTACTTCAGCATCTTTTCCATGT...TTCTCCTCCCAAGATTTCTCTGACTGCGGTCAGCTCTTTCATATCAGTTGTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040766.9 |
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| CDS-3UTR GCA 90 bp | ACTGATATGAAAGAGCTGACCGCAGTCAGAGAAATCTTGGGAGGAGAACTAGAGTCCGCCCTGTTCCCTTaGTCTCAAAACACACTTCAA | + |
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Preference number: 4 (lower is better) Translates to: TDMKELTAVREILGGELESALFP*SQNTLQ Trigger: TTGAAGTGTGTTTTGAGAGCAAGGGAACAGGGCGGA...CTCTAGTTCTCCTCCCAAGATTTCTCTGACTGCGGTCAGCTCTTTCATATCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040766.9 |
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| CDS-3UTR CCA 90 bp | GAGACAACTGATATGAAAGAGCTGACCGCAGTCAGAGAAATCTTGGGAGGAGAATCTAGAATCACGAGTTaGTCAGGTATCCGCCCTGTT | + |
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Preference number: 4 (lower is better) Translates to: ETTDMKELTAVREILGGESRITS*SGIRPV Trigger: AACAGGGCGGATACCTGACCAACTCGTGATTCTAGA...TTCTCCTCCCAAGATTTCTCTGACTGCGGTCAGCTCTTTCATATCAGTTGTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040766.9 |
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| CDS-3UTR CCA 90 bp | AGAAGTTCAAGGTGTTTTCACAAGGAAACCAAAGAGACAACTGATATGAAAGAGGCCAGGCCGGGAGAGTaGGCCAAACAAACCAGACAT | + |
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Preference number: 4 (lower is better) Translates to: RSSRCFHKETKETTDMKEARPGE*AKQTRH Trigger: ATGTCTGGTTTGTTTGGCCCACTCTCCCGGCCTGGC...CTCTTTCATATCAGTTGTCTCTTTGGTTTCCTTGTGAAAACACCTTGAACTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040766.9 |
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| CDS-3UTR TCA 90 bp | AGAAGTTCAAGGTGTTTTCACAAGGAAACCAAAGAGACAACTGATATGAAAGAGTCAACTTCTTGGCCTTaGAGAAGCGACGCAGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: RSSRCFHKETKETTDMKESTSWP*RSDAGR Trigger: TCTACCTGCGTCGCTTCTTCAAGGCCAAGAAGTTGA...CTCTTTCATATCAGTTGTCTCTTTGGTTTCCTTGTGAAAACACCTTGAACTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040766.9 |
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| CDS-3UTR TCA 90 bp | AGAAGTTCAAGGTGTTTTCACAAGGAAACCAAAGAGACAACTGATATGAAAGAGCCACCTCCAGTGGTTTaGGTTTCTCGACTTTTGCAA | + |
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Preference number: 4 (lower is better) Translates to: RSSRCFHKETKETTDMKEPPPVV*VSRLLQ Trigger: TTGCAAAAGTCGAGAAACTCAAACCACTGGAGGTGG...CTCTTTCATATCAGTTGTCTCTTTGGTTTCCTTGTGAAAACACCTTGAACTTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040766.9 |
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| CDS-3UTR CAA 90 bp | GAGACAACTGATATGAAAGAGCTGACCGCAGTCAGAGAAATCTTGGGAGGAGAAATCCGCCCTGTTCCCTaGCTCTCAAAACACACTTCA | + |
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Preference number: 5 (lower is better) Translates to: ETTDMKELTAVREILGGEIRPVP*LSKHTS Trigger: TGAAGTGTGTTTTGAGAGCAAGGGAACAGGGCGGAT...TTCTCCTCCCAAGATTTCTCTGACTGCGGTCAGCTCTTTCATATCAGTTGTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040766.9 |
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| CDS CCA 72 bp | TCCTCTCGGAGACACTTGCGAGAGTTCACGGGCAGATaGAAGGAGATGCCGAGGACCGAGCTGGGGCCGAGC | + |
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Preference number: 6 (lower is better) Translates to: SSRRHLREFTGR*KEMPRTELGPS Trigger: GCTCGGCCCCAGCTCGGTCCTCGGCATCTCCTTCCATCTGCCCGTGAACTCTCGCAAGTGTCTCCGAGAGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040766.9 |
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