RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMDD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000113558

Ensembl transcript IDs: ENSMUST00000222611.2

Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CGCCGTAGGGCTCGGGCCACGCGGTCCCACGACAGGGACGGAGCCTaGGCGGCCAACCAGGTTGCCAGCGCCTCGCGGCAGCGGTCAGAA +
Preference number: 5 (lower is better)
Translates to: RRRARATRSHDRDGA*AANQVASASRQRSE
Trigger: TTCTGACCGCTGCCGCGAGGCGCTGGCAACCTGGTTGGCCGCTCAGGCTCCGTCCCTGTCGTGGGACCGCGTGGCCCGAGCCCTACGGCG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS TCA 90 bp AGGCTGAGAGGCTGCGCGTGTACGGGGGCTGCGGCAGGCGCTCCATaGTCAGATCCAGCTTGTCCCAGTCAGGCGCGGGGGCGGCGGCGC +
Preference number: 5 (lower is better)
Translates to: RLRGCACTGAAAGAP*SDPACPSQARGRRR
Trigger: GCGCCGCCGCCCCCGCGCCTGACTGGGACAAGCTGGATCTGATCATGGAGCGCCTGCCGCAGCCCCCGTACACGCGCAGCCTCTCAGCCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS GCA 90 bp CCAGCGCCTCGCGGCAGCGGTCAGAAACCTCACTGGACTCGGATGTaGCCTCCCTCCCCTCCGAAGCCTGCGCGGTTGTGGCCCGCAGCG +
Preference number: 5 (lower is better)
Translates to: PAPRGSGQKPHWTRM*PPSPPKPARLWPAA
Trigger: CGCTGCGGGCCACAACCGCGCAGGCTTCGGAGGGGAGGGAGGGCACATCCGAGTCCAGTGAGGTTTCTGACCGCTGCCGCGAGGCGCTGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS TCA 90 bp CCAGGCGGACTGCTGTGTGGGGGCCCATGGCGTCCAGCGCGCTCGTaGGGGGCAGCAACCGGTTACAGAGGGCCAGGATCAGCGCCCACA +
Preference number: 5 (lower is better)
Translates to: PGGLLCGGPWRPARS*GAATGYRGPGSAPT
Trigger: TGTGGGCGCTGATCCTGGCCCTCTGTAACCGGTTGCTGCCCCTCACGAGCGCGCTGGACGCCATGGGCCCCCACACAGCAGTCCGCCTGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS GCA 90 bp GAAACCTCACTGGACTCGGATGTGCCCTCCCTCCCCTCCGAAGCCTaGGCGGTTGTGGCCCGCAGCGGCTCTCCCACCGAGTCCTGCGCC +
Preference number: 5 (lower is better)
Translates to: ETSLDSDVPSLPSEA*AVVARSGSPTESCA
Trigger: GGCGCAGGACTCGGTGGGAGAGCCGCTGCGGGCCACAACCGCGCAGGCTTCGGAGGGGAGGGAGGGCACATCCGAGTCCAGTGAGGTTTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS GCA 90 bp GCCAGCGGCCCCACCCAGGCTGAGAGGCTGCGCGTGTACGGGGGCTaGGGCAGGCGCTCCATGATCAGATCCAGCTTGTCCCAGTCAGGC +
Preference number: 5 (lower is better)
Translates to: ASGPTQAERLRVYGG*GRRSMIRSSLSQSG
Trigger: GCCTGACTGGGACAAGCTGGATCTGATCATGGAGCGCCTGCCGCAGCCCCCGTACACGCGCAGCCTCTCAGCCTGGGTGGGGCCGCTGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS TCA 90 bp CCGGGCCAACTCCTTGTCCAGGTCGGGCTCGGGTACCTCGAGGAGTaGACGAAAGTGGTTGCACTCCTCGGGGGTCAGCAGTTCCGCCAG +
Preference number: 5 (lower is better)
Translates to: PGQLLVQVGLGYLEE*TKVVALLGGQQFRQ
Trigger: CTGGCGGAACTGCTGACCCCCGAGGAGTGCAACCACTTTCGTTCACTCCTCGAGGTACCCGAGCCCGACCTGGACAAGGAGTTGGCCCGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS GCA 90 bp TGTCCAGGTCGGGCTCGGGTACCTCGAGGAGTGAACGAAAGTGGTTaGACTCCTCGGGGGTCAGCAGTTCCGCCAGGCGGACTGCTGTGT +
Preference number: 5 (lower is better)
Translates to: CPGRARVPRGVNESG*TPRGSAVPPGGLLC
Trigger: ACACAGCAGTCCGCCTGGCGGAACTGCTGACCCCCGAGGAGTGCAACCACTTTCGTTCACTCCTCGAGGTACCCGAGCCCGACCTGGACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS CCA 90 bp TCCTTGTCCAGGTCGGGCTCGGGTACCTCGAGGAGTGAACGAAAGTaGTTGCACTCCTCGGGGGTCAGCAGTTCCGCCAGGCGGACTGCT +
Preference number: 5 (lower is better)
Translates to: SLSRSGSGTSRSERK*LHSSGVSSSARRTA
Trigger: AGCAGTCCGCCTGGCGGAACTGCTGACCCCCGAGGAGTGCAACCACTTTCGTTCACTCCTCGAGGTACCCGAGCCCGACCTGGACAAGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS TCA 72 bp GCTCGGGCCACGCGGTCCCACGACAGGGACGGAGCCTaGGCGGCCAACCAGGTTGCCAGCGCCTCGCGGCAG +
Preference number: 6 (lower is better)
Translates to: ARATRSHDRDGA*AANQVASASRQ
Trigger: CTGCCGCGAGGCGCTGGCAACCTGGTTGGCCGCTCAGGCTCCGTCCCTGTCGTGGGACCGCGTGGCCCGAGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS CAA 72 bp GGGGGCTGCGGCAGGCGCTCCATGATCAGATCCAGCTaGTCCCAGTCAGGCGCGGGGGCGGCGGCGCGGCGA +
Preference number: 6 (lower is better)
Translates to: GGCGRRSMIRSS*SQSGAGAAARR
Trigger: TCGCCGCGCCGCCGCCCCCGCGCCTGACTGGGACAAGCTGGATCTGATCATGGAGCGCCTGCCGCAGCCCCC
75% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS CAA 90 bp CGCGTGTACGGGGGCTGCGGCAGGCGCTCCATGATCAGATCCAGCTaGTCCCAGTCAGGCGCGGGGGCGGCGGCGCGGCGAGCACGCGGA +
Preference number: 6 (lower is better)
Translates to: RVYGGCGRRSMIRSS*SQSGAGAAARRARG
Trigger: TCCGCGTGCTCGCCGCGCCGCCGCCCCCGCGCCTGACTGGGACAAGCTGGATCTGATCATGGAGCGCCTGCCGCAGCCCCCGTACACGCG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS CAA 90 bp GCGCCGGTCCTCCGCAGCTGCAACGTCGCCTGCTGGTGGAGGTTCTaGGCCAGCTCCCGTGCCACATCCGGGCGGCCACTGCGCCGTAGG +
Preference number: 6 (lower is better)
Translates to: APVLRSCNVACWWRF*ASSRATSGRPLRRR
Trigger: CCTACGGCGCAGTGGCCGCCCGGATGTGGCACGGGAGCTGGCCAAGAACCTCCACCAGCAGGCGACGTTGCAGCTGCGGAGGACCGGCGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS GCA 72 bp GCACTCCTCGGGGGTCAGCAGTTCCGCCAGGCGGACTaGTGTGTGGGGGCCCATGGCGTCCAGCGCGCTCGT +
Preference number: 6 (lower is better)
Translates to: ALLGGQQFRQAD*CVGAHGVQRAR
Trigger: ACGAGCGCGCTGGACGCCATGGGCCCCCACACAGCAGTCCGCCTGGCGGAACTGCTGACCCCCGAGGAGTGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS TCA 72 bp GGCTGCGCGTGTACGGGGGCTGCGGCAGGCGCTCCATaGTCAGATCCAGCTTGTCCCAGTCAGGCGCGGGGG +
Preference number: 6 (lower is better)
Translates to: GCACTGAAAGAP*SDPACPSQARG
Trigger: CCCCCGCGCCTGACTGGGACAAGCTGGATCTGATCATGGAGCGCCTGCCGCAGCCCCCGTACACGCGCAGCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS CCA 72 bp GCGCCGGTCCTCCGCAGCTGCAACGTCGCCTGCTGGTaGAGGTTCTTGGCCAGCTCCCGTGCCACATCCGGG +
Preference number: 6 (lower is better)
Translates to: APVLRSCNVACW*RFLASSRATSG
Trigger: CCCGGATGTGGCACGGGAGCTGGCCAAGAACCTCCACCAGCAGGCGACGTTGCAGCTGCGGAGGACCGGCGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS CAA 90 bp CCACGCGGTCCCACGACAGGGACGGAGCCTGAGCGGCCAACCAGGTaGCCAGCGCCTCGCGGCAGCGGTCAGAAACCTCACTGGACTCGG +
Preference number: 6 (lower is better)
Translates to: PRGPTTGTEPERPTR*PAPRGSGQKPHWTR
Trigger: CCGAGTCCAGTGAGGTTTCTGACCGCTGCCGCGAGGCGCTGGCAACCTGGTTGGCCGCTCAGGCTCCGTCCCTGTCGTGGGACCGCGTGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS CAA 72 bp CCCACGACAGGGACGGAGCCTGAGCGGCCAACCAGGTaGCCAGCGCCTCGCGGCAGCGGTCAGAAACCTCAC +
Preference number: 6 (lower is better)
Translates to: PTTGTEPERPTR*PAPRGSGQKPH
Trigger: GTGAGGTTTCTGACCGCTGCCGCGAGGCGCTGGCAACCTGGTTGGCCGCTCAGGCTCCGTCCCTGTCGTGGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS TCA 72 bp CTGCTGTGTGGGGGCCCATGGCGTCCAGCGCGCTCGTaGGGGGCAGCAACCGGTTACAGAGGGCCAGGATCA +
Preference number: 6 (lower is better)
Translates to: LLCGGPWRPARS*GAATGYRGPGS
Trigger: TGATCCTGGCCCTCTGTAACCGGTTGCTGCCCCTCACGAGCGCGCTGGACGCCATGGGCCCCCACACAGCAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS GCA 72 bp CGCGGCAGCGGTCAGAAACCTCACTGGACTCGGATGTaGCCTCCCTCCCCTCCGAAGCCTGCGCGGTTGTGG +
Preference number: 6 (lower is better)
Translates to: RGSGQKPHWTRM*PPSPPKPARLW
Trigger: CCACAACCGCGCAGGCTTCGGAGGGGAGGGAGGGCACATCCGAGTCCAGTGAGGTTTCTGACCGCTGCCGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS GCA 72 bp CCCACCCAGGCTGAGAGGCTGCGCGTGTACGGGGGCTaGGGCAGGCGCTCCATGATCAGATCCAGCTTGTCC +
Preference number: 6 (lower is better)
Translates to: PTQAERLRVYGG*GRRSMIRSSLS
Trigger: GGACAAGCTGGATCTGATCATGGAGCGCCTGCCGCAGCCCCCGTACACGCGCAGCCTCTCAGCCTGGGTGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS CCA 72 bp TTGCCAGCGCCTCGCGGCAGCGGTCAGAAACCTCACTaGACTCGGATGTGCCCTCCCTCCCCTCCGAAGCCT +
Preference number: 6 (lower is better)
Translates to: LPAPRGSGQKPH*TRMCPPSPPKP
Trigger: AGGCTTCGGAGGGGAGGGAGGGCACATCCGAGTCCAGTGAGGTTTCTGACCGCTGCCGCGAGGCGCTGGCAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS CCA 72 bp TTTGCGCCGGTCCTCCGCAGCTGCAACGTCGCCTGCTaGTGGAGGTTCTTGGCCAGCTCCCGTGCCACATCC +
Preference number: 6 (lower is better)
Translates to: FAPVLRSCNVAC*WRFLASSRATS
Trigger: GGATGTGGCACGGGAGCTGGCCAAGAACCTCCACCAGCAGGCGACGTTGCAGCTGCGGAGGACCGGCGCAAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS GCA 72 bp CGGGCTCGGGTACCTCGAGGAGTGAACGAAAGTGGTTaGACTCCTCGGGGGTCAGCAGTTCCGCCAGGCGGA +
Preference number: 6 (lower is better)
Translates to: RARVPRGVNESG*TPRGSAVPPGG
Trigger: TCCGCCTGGCGGAACTGCTGACCCCCGAGGAGTGCAACCACTTTCGTTCACTCCTCGAGGTACCCGAGCCCG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS CAA 72 bp TCGGGCTCGGGTACCTCGAGGAGTGAACGAAAGTGGTaGCACTCCTCGGGGGTCAGCAGTTCCGCCAGGCGG +
Preference number: 6 (lower is better)
Translates to: SGSGTSRSERKW*HSSGVSSSARR
Trigger: CCGCCTGGCGGAACTGCTGACCCCCGAGGAGTGCAACCACTTTCGTTCACTCCTCGAGGTACCCGAGCCCGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS CCA 72 bp AGGTCGGGCTCGGGTACCTCGAGGAGTGAACGAAAGTaGTTGCACTCCTCGGGGGTCAGCAGTTCCGCCAGG +
Preference number: 6 (lower is better)
Translates to: RSGSGTSRSERK*LHSSGVSSSAR
Trigger: CCTGGCGGAACTGCTGACCCCCGAGGAGTGCAACCACTTTCGTTCACTCCTCGAGGTACCCGAGCCCGACCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS CAA 90 bp TTGTCCAGGTCGGGCTCGGGTACCTCGAGGAGTGAACGAAAGTGGTaGCACTCCTCGGGGGTCAGCAGTTCCGCCAGGCGGACTGCTGTG +
Preference number: 6 (lower is better)
Translates to: LSRSGSGTSRSERKW*HSSGVSSSARRTAV
Trigger: CACAGCAGTCCGCCTGGCGGAACTGCTGACCCCCGAGGAGTGCAACCACTTTCGTTCACTCCTCGAGGTACCCGAGCCCGACCTGGACAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS CAA 90 bp GGCTCGGGCGTCGCCAGCAAGTCCTCAGATAACCGGGCCAACTCCTaGTCCAGGTCGGGCTCGGGTACCTCGAGGAGTGAACGAAAGTGG +
Preference number: 6 (lower is better)
Translates to: GSGVASKSSDNRANS*SRSGSGTSRSERKW
Trigger: CCACTTTCGTTCACTCCTCGAGGTACCCGAGCCCGACCTGGACAAGGAGTTGGCCCGGTTATCTGAGGACTTGCTGGCGACGCCCGAGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS TCA 72 bp CTCCTTGTCCAGGTCGGGCTCGGGTACCTCGAGGAGTaGACGAAAGTGGTTGCACTCCTCGGGGGTCAGCAG +
Preference number: 6 (lower is better)
Translates to: LLVQVGLGYLEE*TKVVALLGGQQ
Trigger: CTGCTGACCCCCGAGGAGTGCAACCACTTTCGTTCACTCCTCGAGGTACCCGAGCCCGACCTGGACAAGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2
CDS CAA 72 bp GTCGCCAGCAAGTCCTCAGATAACCGGGCCAACTCCTaGTCCAGGTCGGGCTCGGGTACCTCGAGGAGTGAA +
Preference number: 6 (lower is better)
Translates to: VASKSSDNRANS*SRSGSGTSRSE
Trigger: TTCACTCCTCGAGGTACCCGAGCCCGACCTGGACAAGGAGTTGGCCCGGTTATCTGAGGACTTGCTGGCGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000222611.2