Pregenerated sensors for TMCO5B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041255Ensembl transcript IDs: ENSMUST00000040856.3
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTCAGCTGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCCTaGCCAGCCCACATCACTAACGCAGGGCCACAGCCAGGGCCCCTC | + |
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Preference number: 1 (lower is better) Translates to: AQLSPRSSESLASSS*PAHITNAGPQPGPL Trigger: GAGGGGCCCTGGCTGTGGCCCTGCGTTAGTGATGTGGGCTGGGCAGGAACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACAGCTGAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR GCA 90 bp | AGTCCTTGGCTTCCAGTTCCTGCCCAGCCCACATCACTAACGCAGGGCCACAGCAAAAGGTACCGGAAGTaGCTAAGCCAAAACTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: SPWLPVPAQPTSLTQGHSKRYRK*LSQNFL Trigger: GAGGAAGTTTTGGCTTAGGCACTTCCGGTACCTTTT...GCTGTGGCCCTGCGTTAGTGATGTGGGCTGGGCAGGAACTGGAAGCCAAGGACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR TCA 90 bp | TGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCCTGCCCAGCCCACATCATTTCTCCAGCTTTGCTaGCTCCAGCTCCAAGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: CHLEALSPWLPVPAQPTSFLQLC*LQLQVL Trigger: AAGGACTTGGAGCTGGAGTCAGCAAAGCTGGAGAAA...TGATGTGGGCTGGGCAGGAACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CCA 90 bp | AAGCTCAGCTGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCCTGCCCAGGAAGTCATCCCTCTCTaGGACTCTTCCTATGGACAG | + |
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Preference number: 4 (lower is better) Translates to: KLSCHLEALSPWLPVPAQEVIPL*DSSYGQ Trigger: CTGTCCATAGGAAGAGTCCCAGAGAGGGATGACTTC...CTGGGCAGGAACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACAGCTGAGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CCA 90 bp | AGAAAGCTCAGCTGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCCTGCCTTCTGCTCATCAGCATaGGCAGGGTGTCCACGAGAA | + |
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Preference number: 4 (lower is better) Translates to: RKLSCHLEALSPWLPVPAFCSSA*AGCPRE Trigger: TTCTCGTGGACACCCTGCCCATGCTGATGAGCAGAA...GGCAGGAACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACAGCTGAGCTTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR TCA 90 bp | AAAGCTCAGCTGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCCTGCCCATTTCTGAGGAGAATCTaGTTGGCCTCATCCAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: KAQLSPRSSESLASSSCPFLRRI*LASSSL Trigger: GAGGCTGGATGAGGCCAATCAGATTCTCCTCAGAAA...TGGGCAGGAACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACAGCTGAGCTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR TCA 90 bp | AGTCCTTGGCTTCCAGTTCCTGCCCAGCCCACATCACTAACGCAGGGCCACAGCCAGAGGCAATGTTCTTaGGTCCTTTTGAAATCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SPWLPVPAQPTSLTQGHSQRQCS*VLLKSS Trigger: AGAAGATTTCAAAAGGACTCAAGAACATTGCCTCTG...GCTGTGGCCCTGCGTTAGTGATGTGGGCTGGGCAGGAACTGGAAGCCAAGGACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR TCA 90 bp | CTGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCCTGCCCAGCCCACATCGTTCTTGAGTCCTTTTaGAATCTTCTTCTGAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: LSPRSSESLASSSCPAHIVLESF*NLLLKF Trigger: GAACTTCAGAAGAAGATTTCAAAAGGACTCAAGAAC...GATGTGGGCTGGGCAGGAACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CCA 90 bp | TGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCCTGCCCAGCCCACATCACCATGTTACTTTGAATaGTCTCTACCAGAGTTGATC | + |
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Preference number: 4 (lower is better) Translates to: CHLEALSPWLPVPAQPTSPCYFE*SLPELI Trigger: GATCAACTCTGGTAGAGACCATTCAAAGTAACATGG...TGATGTGGGCTGGGCAGGAACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR TCA 90 bp | AAAGCTCAGCTGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCCTGCCCATTCTCCATGTTACTTTaGATGGTCTCTACCAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: KAQLSPRSSESLASSSCPFSMLL*MVSTRV Trigger: AACTCTGGTAGAGACCATTCAAAGTAACATGGAGAA...TGGGCAGGAACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACAGCTGAGCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CCA 90 bp | AAAGCTCAGCTGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCCTGCCCACTTTTTCAGGGTTTCTaGATCAGAGGCAATGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: KAQLSPRSSESLASSSCPLFQGF*IRGNVL Trigger: AAGAACATTGCCTCTGATCCAGAAACCCTGAAAAAG...TGGGCAGGAACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACAGCTGAGCTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR GCA 90 bp | CACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCCTGCCCAGCCCACATCACTAGTTCCATCACATTCTTaGTTAGGGTCTTATTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: HLEALSPWLPVPAQPTSLVPSHS*LGSYSF Trigger: AAAAGAATAAGACCCTAAGCAAGAATGTGATGGAAC...TAGTGATGTGGGCTGGGCAGGAACTGGAAGCCAAGGACTCAGAGCTTCTAGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR TCA 90 bp | TTAAATAGAAAGCTCAGCTGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCTGAGTTCAGGTACTTaGGATTCTGTTTTATGGCTT | + |
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Preference number: 4 (lower is better) Translates to: LNRKLSCHLEALSPWLPVLSSGT*DSVLWL Trigger: AAGCCATAAAACAGAATCTCAAGTACCTGAACTCAG...AACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACAGCTGAGCTTTCTATTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR TCA 90 bp | TTAAATAGAAAGCTCAGCTGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTTCTTTTGAATCTTTCTaGGGAGAATCTGATTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: LNRKLSCHLEALSPWLPVSFESF*GESDWP Trigger: AGGCCAATCAGATTCTCCTCAGAAAGATTCAAAAGA...AACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACAGCTGAGCTTTCTATTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CCA 90 bp | GAATTAAATAGAAAGCTCAGCTGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAAGTCACTTTCCATCTTaGCGATTTCCTTCTCTTGTT | + |
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Preference number: 4 (lower is better) Translates to: ELNRKLSCHLEALSPWLPSHFPS*RFPSLV Trigger: AACAAGAGAAGGAAATCGCCAAGATGGAAAGTGACT...TGGAAGCCAAGGACTCAGAGCTTCTAGGTGACAGCTGAGCTTTCTATTTAATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CCA 90 bp | GAATTAAATAGAAAGCTCAGCTGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCATGGGAAGAGTCATTCTaGGCTTTGGATATTTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: ELNRKLSCHLEALSPWLPWEESF*ALDISF Trigger: GAAAGAAATATCCAAAGCCCAGAATGACTCTTCCCA...TGGAAGCCAAGGACTCAGAGCTTCTAGGTGACAGCTGAGCTTTCTATTTAATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CCA 90 bp | TTAAATAGAAAGCTCAGCTGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTAGTCATTCTGGGCTTTaGATATTTCTTTCTCAAGCA | + |
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Preference number: 4 (lower is better) Translates to: LNRKLSCHLEALSPWLPVSHSGL*IFLSQA Trigger: TGCTTGAGAAAGAAATATCCAAAGCCCAGAATGACT...AACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACAGCTGAGCTTTCTATTTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CAA 90 bp | TGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCCTGCCCAGCCCACATCATGTGCTAGGATCTCATaGAAGTCATCCCTCTCTGGG | + |
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Preference number: 5 (lower is better) Translates to: CHLEALSPWLPVPAQPTSCARIS*KSSLSG Trigger: CCCAGAGAGGGATGACTTCAATGAGATCCTAGCACA...TGATGTGGGCTGGGCAGGAACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CAA 90 bp | AGTCCTTGGCTTCCAGTTCCTGCCCAGCCCACATCACTAACGCAGGGCCACAGCTCTGAGTTCAGGTACTaGAGATTCTGTTTTATGGCT | + |
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Preference number: 5 (lower is better) Translates to: SPWLPVPAQPTSLTQGHSSEFRY*RFCFMA Trigger: AGCCATAAAACAGAATCTCAAGTACCTGAACTCAGA...GCTGTGGCCCTGCGTTAGTGATGTGGGCTGGGCAGGAACTGGAAGCCAAGGACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CAA 90 bp | CACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCCTGCCCAGCCCACATCACTATGGTCTCTACCAGAGTaGATCCCGGTTTCACTACTT | + |
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Preference number: 5 (lower is better) Translates to: HLEALSPWLPVPAQPTSLWSLPE*IPVSLL Trigger: AAGTAGTGAAACCGGGATCAACTCTGGTAGAGACCA...TAGTGATGTGGGCTGGGCAGGAACTGGAAGCCAAGGACTCAGAGCTTCTAGGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CAA 90 bp | AGTCCTTGGCTTCCAGTTCCTGCCCAGCCCACATCACTAACGCAGGGCCACAGCAGTTCCATCACATTCTaGCTTAGGGTCTTATTCTTT | + |
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Preference number: 5 (lower is better) Translates to: SPWLPVPAQPTSLTQGHSSSITF*LRVLFF Trigger: AAAGAATAAGACCCTAAGCAAGAATGTGATGGAACT...GCTGTGGCCCTGCGTTAGTGATGTGGGCTGGGCAGGAACTGGAAGCCAAGGACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CAA 90 bp | AAAGCTCAGCTGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCCTGCCCAGTGCACAGGACTCGGTaGACTTTTGTAGTTTCACCT | + |
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Preference number: 5 (lower is better) Translates to: KAQLSPRSSESLASSSCPVHRTR*TFVVSP Trigger: AGGTGAAACTACAAAAGTCAACCGAGTCCTGTGCAC...TGGGCAGGAACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACAGCTGAGCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CAA 90 bp | CACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCCTGCCCAGCCCACATCACTAGTCTGGGTTTACATATaGCAGGTGGAAGAACACGTA | + |
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Preference number: 5 (lower is better) Translates to: HLEALSPWLPVPAQPTSLVWVYI*QVEEHV Trigger: TACGTGTTCTTCCACCTGCAATATGTAAACCCAGAC...TAGTGATGTGGGCTGGGCAGGAACTGGAAGCCAAGGACTCAGAGCTTCTAGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS TCA 90 bp | GCTCCAAGTCCTTCAAGGCAGTCTCCTTCTGTGCTAGGATCTCATTaGAGTCATCCCTCTCTGGGACTCTTCCTATGGACAGGGCAATAT | + |
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Preference number: 5 (lower is better) Translates to: APSPSRQSPSVLGSH*SHPSLGLFLWTGQY Trigger: ATATTGCCCTGTCCATAGGAAGAGTCCCAGAGAGGGATGACTTCAATGAGATCCTAGCACAGAAGGAGACTGCCTTGAAGGACTTGGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CAA 90 bp | AAAGCTCAGCTGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCCTGCCCAGAGTCATTCTGGGCTTaGGATATTTCTTTCTCAAGC | + |
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Preference number: 5 (lower is better) Translates to: KAQLSPRSSESLASSSCPESFWA*DISFSS Trigger: GCTTGAGAAAGAAATATCCAAAGCCCAGAATGACTC...TGGGCAGGAACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACAGCTGAGCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CAA 90 bp | TGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCCTGCCCAGCCCACATCACTCCCTCAGAATTTCTaGGTATTTCTTTATGTAGTG | + |
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Preference number: 5 (lower is better) Translates to: CHLEALSPWLPVPAQPTSLPQNF*VFLYVV Trigger: CACTACATAAAGAAATACCAAGAAATTCTGAGGGAG...TGATGTGGGCTGGGCAGGAACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CAA 90 bp | TTAAATAGAAAGCTCAGCTGTCACCTAGAAGCTCTGAGTCCTTGGCTTCCAGTTCTTCTCCATGTTACTTaGAATGGTCTCTACCAGAGT | + |
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Preference number: 5 (lower is better) Translates to: LNRKLSCHLEALSPWLPVLLHVT*NGLYQS Trigger: ACTCTGGTAGAGACCATTCAAAGTAACATGGAGAAG...AACTGGAAGCCAAGGACTCAGAGCTTCTAGGTGACAGCTGAGCTTTCTATTTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CAA 90 bp | TCCAGGAGAGAATTAAATAGAAAGCTCAGCTGTCACCTAGAAGCTCTGAGTCCTTCAGAGGCAATGTTCTaGAGTCCTTTTGAAATCTTC | + |
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Preference number: 5 (lower is better) Translates to: SRRELNRKLSCHLEALSPSEAMF*SPFEIF Trigger: GAAGATTTCAAAAGGACTCAAGAACATTGCCTCTGA...AGGACTCAGAGCTTCTAGGTGACAGCTGAGCTTTCTATTTAATTCTCTCCTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS-3UTR CAA 90 bp | TCCAGGAGAGAATTAAATAGAAAGCTCAGCTGTCACCTAGAAGCTCTGAGTCCTGAGCTGAAATACAGATaGGTAGTCACTTTCCATCTT | + |
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Preference number: 5 (lower is better) Translates to: SRRELNRKLSCHLEALSPELKYR*VVTFHL Trigger: AAGATGGAAAGTGACTACCAATCTGTATTTCAGCTC...AGGACTCAGAGCTTCTAGGTGACAGCTGAGCTTTCTATTTAATTCTCTCCTGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS TCA 90 bp | CTGTTACTTTCTTTTTCAGGGTTTCTGGATCAGAGGCAATGTTCTTaGGTCCTTTTGAAATCTTCTTCTGAAGTTCCATCACATTCTTGC | + |
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Preference number: 5 (lower is better) Translates to: LLLSFSGFLDQRQCS*VLLKSSSEVPSHSC Trigger: GCAAGAATGTGATGGAACTTCAGAAGAAGATTTCAAAAGGACTCAAGAACATTGCCTCTGATCCAGAAACCCTGAAAAAGAAAGTAACAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS CCA 72 bp | GCTCATCAGCATGGGCAGGGTGTCCACGAGAAAGTCTaGGTTTACATATTGCAGGTGGAAGAACACGTAACC | + |
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Preference number: 6 (lower is better) Translates to: AHQHGQGVHEKV*VYILQVEEHVT Trigger: GGTTACGTGTTCTTCCACCTGCAATATGTAAACCCAGACTTTCTCGTGGACACCCTGCCCATGCTGATGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS CCA 72 bp | CCCTTAGCCACTTCAAGCTACTTCTGCTCATCAGCATaGGCAGGGTGTCCACGAGAAAGTCTGGGTTTACAT | + |
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Preference number: 6 (lower is better) Translates to: PLATSSYFCSSA*AGCPRESLGLH Trigger: ATGTAAACCCAGACTTTCTCGTGGACACCCTGCCCATGCTGATGAGCAGAAGTAGCTTGAAGTGGCTAAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS CAA 90 bp | AGCTCCAAGTCCTTCAAGGCAGTCTCCTTCTGTGCTAGGATCTCATaGAAGTCATCCCTCTCTGGGACTCTTCCTATGGACAGGGCAATA | + |
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Preference number: 6 (lower is better) Translates to: SSKSFKAVSFCARIS*KSSLSGTLPMDRAI Trigger: TATTGCCCTGTCCATAGGAAGAGTCCCAGAGAGGGATGACTTCAATGAGATCCTAGCACAGAAGGAGACTGCCTTGAAGGACTTGGAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS TCA 72 bp | CCTTCAAGGCAGTCTCCTTCTGTGCTAGGATCTCATTaGAGTCATCCCTCTCTGGGACTCTTCCTATGGACA | + |
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Preference number: 6 (lower is better) Translates to: PSRQSPSVLGSH*SHPSLGLFLWT Trigger: TGTCCATAGGAAGAGTCCCAGAGAGGGATGACTTCAATGAGATCCTAGCACAGAAGGAGACTGCCTTGAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS CAA 72 bp | TCCTTCAAGGCAGTCTCCTTCTGTGCTAGGATCTCATaGAAGTCATCCCTCTCTGGGACTCTTCCTATGGAC | + |
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Preference number: 6 (lower is better) Translates to: SFKAVSFCARIS*KSSLSGTLPMD Trigger: GTCCATAGGAAGAGTCCCAGAGAGGGATGACTTCAATGAGATCCTAGCACAGAAGGAGACTGCCTTGAAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS CAA 90 bp | GTTCCATCACATTCTTGCTTAGGGTCTTATTCTTTTTCTCCAGCTTaGCTGACTCCAGCTCCAAGTCCTTCAAGGCAGTCTCCTTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: VPSHSCLGSYSFSPA*LTPAPSPSRQSPSV Trigger: CACAGAAGGAGACTGCCTTGAAGGACTTGGAGCTGGAGTCAGCAAAGCTGGAGAAAAAGAATAAGACCCTAAGCAAGAATGTGATGGAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS CAA 72 bp | CATTCTTGCTTAGGGTCTTATTCTTTTTCTCCAGCTTaGCTGACTCCAGCTCCAAGTCCTTCAAGGCAGTCT | + |
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Preference number: 6 (lower is better) Translates to: HSCLGSYSFSPA*LTPAPSPSRQS Trigger: AGACTGCCTTGAAGGACTTGGAGCTGGAGTCAGCAAAGCTGGAGAAAAAGAATAAGACCCTAAGCAAGAATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS CAA 90 bp | CAGGGCAATATCTCTCTCAAGACTTTGTATAGATTCTTCTTTCTTTaGAATCTTTCTGAGGAGAATCTGATTGGCCTCATCCAGCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: QGNISLKTLYRFFFL*NLSEENLIGLIQPL Trigger: CAGAGGCTGGATGAGGCCAATCAGATTCTCCTCAGAAAGATTCAAAAGAAAGAAGAATCTATACAAAGTCTTGAGAGAGATATTGCCCTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS CAA 90 bp | TTCTCTTGTTGTGCACAGGACTCGGTTGACTTTTGTAGTTTCACCTaGAATTCTGTTACTTTCTTTTTCAGGGTTTCTGGATCAGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: FSCCAQDSVDFCSFT*NSVTFFFRVSGSEA Trigger: TGCCTCTGATCCAGAAACCCTGAAAAAGAAAGTAACAGAATTCAAGGTGAAACTACAAAAGTCAACCGAGTCCTGTGCACAACAAGAGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS TCA 72 bp | GGTTTCTGGATCAGAGGCAATGTTCTTGAGTCCTTTTaGAATCTTCTTCTGAAGTTCCATCACATTCTTGCT | + |
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Preference number: 6 (lower is better) Translates to: GFWIRGNVLESF*NLLLKFHHILA Trigger: AGCAAGAATGTGATGGAACTTCAGAAGAAGATTTCAAAAGGACTCAAGAACATTGCCTCTGATCCAGAAACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS TCA 72 bp | TCTTTTTCAGGGTTTCTGGATCAGAGGCAATGTTCTTaGGTCCTTTTGAAATCTTCTTCTGAAGTTCCATCA | + |
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Preference number: 6 (lower is better) Translates to: SFSGFLDQRQCS*VLLKSSSEVPS Trigger: TGATGGAACTTCAGAAGAAGATTTCAAAAGGACTCAAGAACATTGCCTCTGATCCAGAAACCCTGAAAAAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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| CDS CAA 72 bp | ATCTCTCTCAAGACTTTGTATAGATTCTTCTTTCTTTaGAATCTTTCTGAGGAGAATCTGATTGGCCTCATC | + |
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Preference number: 6 (lower is better) Translates to: ISLKTLYRFFFL*NLSEENLIGLI Trigger: GATGAGGCCAATCAGATTCTCCTCAGAAAGATTCAAAAGAAAGAAGAATCTATACAAAGTCTTGAGAGAGAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040856.3 |
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