Pregenerated sensors for TMCO5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027355Ensembl transcript IDs: ENSMUST00000028834.3, ENSMUST00000123598.8, ENSMUST00000155470.8
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTGAGACACACTTCTCCCCTCCACAGATTTTGCCACTTCCCATTTaGAAGCCTTCATCCCTCCTGCCTTCCGCTGCCCTCAGGTATGGC | + |
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Preference number: 1 (lower is better) Translates to: AETHFSPPQILPLPI*KPSSLLPSAALRYG Trigger: GCCATACCTGAGGGCAGCGGAAGGCAGGAGGGATGAAGGCTTGCAAATGGGAAGTGGCAAAATCTGTGGAGGGGAGAAGTGTGTCTCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| 3UTR GCA 90 bp | ACCTCGAGGGAAGAGCTGAGACACACTTCTCCCCTCCACAGATTTTaGCACTTCCCATTTGCAAGCCTTCATCCCTCCTGCCTTCCGCTG | + |
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Preference number: 1 (lower is better) Translates to: TSREELRHTSPLHRF*HFPFASLHPSCLPL Trigger: CAGCGGAAGGCAGGAGGGATGAAGGCTTGCAAATGGGAAGTGGCAAAATCTGTGGAGGGGAGAAGTGTGTCTCAGCTCTTCCCTCGAGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| 3UTR-3UTR GCA 90 bp | AGGCCAACCTCGAGGGAAGAGCTGAGACACACTTCTCCCCTCCACAGATTTTGCAGCCTTCATCCCTCCTaGCTTCCGCTGCCCTCAGGT | + |
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Preference number: 2 (lower is better) Translates to: RPTSREELRHTSPLHRFCSLHPS*LPLPSG Trigger: ACCTGAGGGCAGCGGAAGGCAGGAGGGATGAAGGCT...GCAAAATCTGTGGAGGGGAGAAGTGTGTCTCAGCTCTTCCCTCGAGGTTGGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| 3UTR CAA 90 bp | AACCTCGAGGGAAGAGCTGAGACACACTTCTCCCCTCCACAGATTTaGCCACTTCCCATTTGCAAGCCTTCATCCCTCCTGCCTTCCGCT | + |
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Preference number: 2 (lower is better) Translates to: NLEGRAETHFSPPQI*PLPICKPSSLLPSA Trigger: AGCGGAAGGCAGGAGGGATGAAGGCTTGCAAATGGGAAGTGGCAAAATCTGTGGAGGGGAGAAGTGTGTCTCAGCTCTTCCCTCGAGGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| 3UTR GCA 72 bp | CACTTCTCCCCTCCACAGATTTTGCCACTTCCCATTTaGAAGCCTTCATCCCTCCTGCCTTCCGCTGCCCTC | + |
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Preference number: 3 (lower is better) Translates to: HFSPPQILPLPI*KPSSLLPSAAL Trigger: GAGGGCAGCGGAAGGCAGGAGGGATGAAGGCTTGCAAATGGGAAGTGGCAAAATCTGTGGAGGGGAGAAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| 3UTR GCA 72 bp | GAAGAGCTGAGACACACTTCTCCCCTCCACAGATTTTaGCACTTCCCATTTGCAAGCCTTCATCCCTCCTGC | + |
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Preference number: 3 (lower is better) Translates to: EELRHTSPLHRF*HFPFASLHPSC Trigger: GCAGGAGGGATGAAGGCTTGCAAATGGGAAGTGGCAAAATCTGTGGAGGGGAGAAGTGTGTCTCAGCTCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| 3UTR-3UTR CAA 90 bp | TCTTTACTGGGCAAGGTTAATCCTGGAAACGTGACACTGAGACAGATGGTCACTTTTGCCACTTCCCATTaGCAAGCCTTCATCCCTCCT | + |
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Preference number: 3 (lower is better) Translates to: SLLGKVNPGNVTLRQMVTFATSH*QAFIPP Trigger: AGGAGGGATGAAGGCTTGCAAATGGGAAGTGGCAAA...AGTGACCATCTGTCTCAGTGTCACGTTTCCAGGATTAACCTTGCCCAGTAAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS-3UTR CCA 90 bp | CCATTTGCAAGCCTTCATCCCTCCTGCCTTCCGCTGCCCTCAGGTATGGCTTGGCCGAGCTCCTTCTCCTaGTCTGCACAGGAAGACTCC | + |
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Preference number: 4 (lower is better) Translates to: PFASLHPSCLPLPSGMAWPSSFS*SAQEDS Trigger: GGAGTCTTCCTGTGCAGACCAGGAGAAGGAGCTCGG...CCAAGCCATACCTGAGGGCAGCGGAAGGCAGGAGGGATGAAGGCTTGCAAATGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| 3UTR CAA 72 bp | ACACTTCTCCCCTCCACAGATTTTGCCACTTCCCATTaGCAAGCCTTCATCCCTCCTGCCTTCCGCTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: TLLPSTDFATSH*QAFIPPAFRCP Trigger: AGGGCAGCGGAAGGCAGGAGGGATGAAGGCTTGCAAATGGGAAGTGGCAAAATCTGTGGAGGGGAGAAGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS-3UTR GCA 90 bp | CCATTTGCAAGCCTTCATCCCTCCTGCCTTCCGCTGCCCTCAGGTATGGCTTGGTTTACTGAACCTCAGTaGCCCTTTACTGATGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: PFASLHPSCLPLPSGMAWFTEPQ*PFTDEA Trigger: GGCTTCATCAGTAAAGGGGCACTGAGGTTCAGTAAA...CCAAGCCATACCTGAGGGCAGCGGAAGGCAGGAGGGATGAAGGCTTGCAAATGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| 3UTR CAA 72 bp | GGAAGAGCTGAGACACACTTCTCCCCTCCACAGATTTaGCCACTTCCCATTTGCAAGCCTTCATCCCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: GRAETHFSPPQI*PLPICKPSSLL Trigger: CAGGAGGGATGAAGGCTTGCAAATGGGAAGTGGCAAAATCTGTGGAGGGGAGAAGTGTGTCTCAGCTCTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS-3UTR TCA 90 bp | TCCACAGATTTTGCCACTTCCCATTTGCAAGCCTTCATCCCTCCTGCCTTCCGCCTTCTGTCTCAAGCGTaGGAGATGGGAAGAGGAAAC | + |
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Preference number: 4 (lower is better) Translates to: STDFATSHLQAFIPPAFRLLSQA*EMGRGN Trigger: GTTTCCTCTTCCCATCTCTCACGCTTGAGACAGAAG...GCGGAAGGCAGGAGGGATGAAGGCTTGCAAATGGGAAGTGGCAAAATCTGTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS-3UTR CCA 90 bp | CACAGATTTTGCCACTTCCCATTTGCAAGCCTTCATCCCTCCTGCCTTCCGCTGGAAGCAGCTCCTGGTTaGCTTCATCTATTCTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: HRFCHFPFASLHPSCLPLEAAPG*LHLFSA Trigger: TGCAGAGAATAGATGAAGCCAACCAGGAGCTGCTTC...CAGCGGAAGGCAGGAGGGATGAAGGCTTGCAAATGGGAAGTGGCAAAATCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS-3UTR CCA 90 bp | CCATTTGCAAGCCTTCATCCCTCCTGCCTTCCGCTGCCCTCAGGTATGGCTTGGCTCTTCAAAGCTTCCTaGTACTTCTTTATGCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: PFASLHPSCLPLPSGMAWLFKAS*YFFMQR Trigger: TCTCTGCATAAAGAAGTACCAGGAAGCTTTGAAGAG...CCAAGCCATACCTGAGGGCAGCGGAAGGCAGGAGGGATGAAGGCTTGCAAATGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS-3UTR CCA 90 bp | ACAGATTTTGCCACTTCCCATTTGCAAGCCTTCATCCCTCCTGCCTTCCGCTGCCTCAAGCGTGAGAGATaGGAAGAGGAAACATCTCAG | + |
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Preference number: 4 (lower is better) Translates to: TDFATSHLQAFIPPAFRCLKRER*EEETSQ Trigger: CTGAGATGTTTCCTCTTCCCATCTCTCACGCTTGAG...GCAGCGGAAGGCAGGAGGGATGAAGGCTTGCAAATGGGAAGTGGCAAAATCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS-3UTR TCA 90 bp | AGGCCAACCTCGAGGGAAGAGCTGAGACACACTTCTCCCCTCCACAGATTTTGCCTTTCTCTGAAGTTCTaGAATACTGTGGACCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: RPTSREELRHTSPLHRFCLSLKF*NTVDQS Trigger: ACTCTGGTCCACAGTATTTCAGAACTTCAGAGAAAG...GCAAAATCTGTGGAGGGGAGAAGTGTGTCTCAGCTCTTCCCTCGAGGTTGGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS-3UTR TCA 90 bp | ATTTGCAAGCCTTCATCCCTCCTGCCTTCCGCTGCCCTCAGGTATGGCTTGGGGCACCTTGTTCATACCTaGTTACCTTTTGTGATTTTC | + |
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Preference number: 4 (lower is better) Translates to: ICKPSSLLPSAALRYGLGHLVHT*LPFVIF Trigger: GAAAATCACAAAAGGTAATCAGGTATGAACAAGGTG...CCCCAAGCCATACCTGAGGGCAGCGGAAGGCAGGAGGGATGAAGGCTTGCAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS-3UTR CCA 90 bp | ACACACTTCTCCCCTCCACAGATTTTGCCACTTCCCATTTGCAAGCCTTCATCCTCGAGAAGCAGCTCCTaGTTGGCTTCATCTATTCTC | + |
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Preference number: 4 (lower is better) Translates to: THFSPPQILPLPICKPSSSRSSS*LASSIL Trigger: GAGAATAGATGAAGCCAACCAGGAGCTGCTTCTCGA...GGATGAAGGCTTGCAAATGGGAAGTGGCAAAATCTGTGGAGGGGAGAAGTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS-3UTR TCA 90 bp | AGGCCAACCTCGAGGGAAGAGCTGAGACACACTTCTCCCCTCCACAGATTTTGCGATAATGTTCTTCTTTaGTTGGGCCAATCTCAAGAT | + |
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Preference number: 4 (lower is better) Translates to: RPTSREELRHTSPLHRFCDNVLL*LGQSQD Trigger: ATCTTGAGATTGGCCCAATCAAAGAAGAACATTATC...GCAAAATCTGTGGAGGGGAGAAGTGTGTCTCAGCTCTTCCCTCGAGGTTGGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS-3UTR CCA 90 bp | ACAGATTTTGCCACTTCCCATTTGCAAGCCTTCATCCCTCCTGCCTTCCGCTGCAGTTCTGAAATACTGTaGACCAGAGTCTCATTCTTC | + |
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Preference number: 4 (lower is better) Translates to: TDFATSHLQAFIPPAFRCSSEIL*TRVSFF Trigger: GAAGAATGAGACTCTGGTCCACAGTATTTCAGAACT...GCAGCGGAAGGCAGGAGGGATGAAGGCTTGCAAATGGGAAGTGGCAAAATCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS-3UTR GCA 90 bp | AGACACACTTCTCCCCTCCACAGATTTTGCCACTTCCCATTTGCAAGCCTTCATGCTTCATCTATTCTCTaGATATCCCTTTCGAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: RHTSPLHRFCHFPFASLHASSIL*ISLSRS Trigger: GGACCTCGAAAGGGATATGCAGAGAATAGATGAAGC...ATGAAGGCTTGCAAATGGGAAGTGGCAAAATCTGTGGAGGGGAGAAGTGTGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS-3UTR GCA 90 bp | AGACACACTTCTCCCCTCCACAGATTTTGCCACTTCCCATTTGCAAGCCTTCATCTCTCTCAGAATCCATaGTTAAGACTTTTGATACTT | + |
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Preference number: 4 (lower is better) Translates to: RHTSPLHRFCHFPFASLHLSQNP*LRLLIL Trigger: AAGTATCAAAAGTCTTAAGCATGGATTCTGAGAGAG...ATGAAGGCTTGCAAATGGGAAGTGGCAAAATCTGTGGAGGGGAGAAGTGTGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS-3UTR CAA 90 bp | CCATTTGCAAGCCTTCATCCCTCCTGCCTTCCGCTGCCCTCAGGTATGGCTTGGTGGACTCTTCTGGGGTaGTTTCTAGATCACCTTGTT | + |
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Preference number: 5 (lower is better) Translates to: PFASLHPSCLPLPSGMAWWTLLG*FLDHLV Trigger: AACAAGGTGATCTAGAAACAACCCCAGAAGAGTCCA...CCAAGCCATACCTGAGGGCAGCGGAAGGCAGGAGGGATGAAGGCTTGCAAATGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS-3UTR CAA 90 bp | CACAGATTTTGCCACTTCCCATTTGCAAGCCTTCATCCCTCCTGCCTTCCGCTGAGAAGCAGCTCCTGGTaGGCTTCATCTATTCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: HRFCHFPFASLHPSCLPLRSSSW*ASSILC Trigger: GCAGAGAATAGATGAAGCCAACCAGGAGCTGCTTCT...CAGCGGAAGGCAGGAGGGATGAAGGCTTGCAAATGGGAAGTGGCAAAATCTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS CCA 90 bp | ATCCTCTTCAAAGCTTCCTGGTACTTCTTGCCGAGCTCCTTCTCCTaGTCTGCACAGGAAGACTCCAACTGTTGTAGTTTAACCTTGGAC | + |
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Preference number: 5 (lower is better) Translates to: ILFKASWYFLPSSFS*SAQEDSNCCSLTLD Trigger: GTCCAAGGTTAAACTACAACAGTTGGAGTCTTCCTGTGCAGACCAGGAGAAGGAGCTCGGCAAGAAGTACCAGGAAGCTTTGAAGAGGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155470.8 |
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| CDS-3UTR CAA 90 bp | TCTTTACTGGGCAAGGTTAATCCTGGAAACGTGACACTGAGACAGATGGTCACTCAGCTCCTGCAGAGCTaGTTCTCTTTCCATCACAGT | + |
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Preference number: 5 (lower is better) Translates to: SLLGKVNPGNVTLRQMVTQLLQS*FSFHHS Trigger: ACTGTGATGGAAAGAGAACAAGCTCTGCAGGAGCTG...AGTGACCATCTGTCTCAGTGTCACGTTTCCAGGATTAACCTTGCCCAGTAAAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS CCA 90 bp | TCTTCTGCAGGGTTCCCAGTCTGGGTGATCTCATGTTCTAGCCTCTaGATTTCATTTTCTTTTTCTTGTATCTCGAGAAGCAGCTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: SSAGFPVWVISCSSL*ISFSFSCISRSSSW Trigger: CCAGGAGCTGCTTCTCGAGATACAAGAAAAAGAAAATGAAATCCAGAGGCTAGAACATGAGATCACCCAGACTGGGAACCCTGCAGAAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028834.3 ENSMUST00000123598.8 ENSMUST00000155470.8 |
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| CDS TCA 90 bp | TTTCCTTCTCCCACTCCTCGTCTTCTGCAGGGTTCCCAGTCTGGGTaGTCTCATGTTCTAGCCTCTGGATTTCATTTTCTTTTTCTTGTA | + |
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Preference number: 5 (lower is better) Translates to: FPSPTPRLLQGSQSG*SHVLASGFHFLFLV Trigger: TACAAGAAAAAGAAAATGAAATCCAGAGGCTAGAACATGAGATCACCCAGACTGGGAACCCTGCAGAAGACGAGGAGTGGGAGAAGGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028834.3 ENSMUST00000123598.8 ENSMUST00000155470.8 |
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| CDS CCA 90 bp | TTAGGCAGCGCGTTGACCAGGAGGTCGGGATTTATAAAACTTAAATaGAAGATCAGGTATCCCAGCAATCTGATGAAAAACAGCGTGGAG | + |
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Preference number: 5 (lower is better) Translates to: LGSALTRRSGFIKLK*KIRYPSNLMKNSVE Trigger: CTCCACGCTGTTTTTCATCAGATTGCTGGGATACCTGATCTTCCATTTAAGTTTTATAAATCCCGACCTCCTGGTCAACGCGCTGCCTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS GCA 90 bp | TCTTGTATCTCGAGAAGCAGCTCCTGGTTGGCTTCATCTATTCTCTaGATATCCCTTTCGAGGTCCATGTTCAAGCTGATAATGTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: SCISRSSSWLASSIL*ISLSRSMFKLIMFF Trigger: GAAGAACATTATCAGCTTGAACATGGACCTCGAAAGGGATATGCAGAGAATAGATGAAGCCAACCAGGAGCTGCTTCTCGAGATACAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028834.3 ENSMUST00000123598.8 ENSMUST00000155470.8 |
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| CDS-3UTR CAA 90 bp | TCTTTACTGGGCAAGGTTAATCCTGGAAACGTGACACTGAGACAGATGGTCACTCCATGCTTAAGACTTTaGATACTTCTCTCTCAAGGT | + |
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Preference number: 5 (lower is better) Translates to: SLLGKVNPGNVTLRQMVTPCLRL*ILLSQG Trigger: ACCTTGAGAGAGAAGTATCAAAAGTCTTAAGCATGG...AGTGACCATCTGTCTCAGTGTCACGTTTCCAGGATTAACCTTGCCCAGTAAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS GCA 90 bp | CATCCATCTTATTTAGGCTCGTACTCCTTTCTCTCTCAGAATCCATaGTTAAGACTTTTGATACTTCTCTCTCAAGGTATCCAGTTTCTA | + |
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Preference number: 5 (lower is better) Translates to: HPSYLGSYSFLSQNP*LRLLILLSQGIQFL Trigger: TAGAAACTGGATACCTTGAGAGAGAAGTATCAAAAGTCTTAAGCATGGATTCTGAGAGAGAAAGGAGTACGAGCCTAAATAAGATGGATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028834.3 ENSMUST00000123598.8 ENSMUST00000155470.8 |
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| CDS CCA 72 bp | TTCTCCCACTCCTCGTCTTCTGCAGGGTTCCCAGTCTaGGTGATCTCATGTTCTAGCCTCTGGATTTCATTT | + |
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Preference number: 6 (lower is better) Translates to: FSHSSSSAGFPV*VISCSSLWISF Trigger: AAATGAAATCCAGAGGCTAGAACATGAGATCACCCAGACTGGGAACCCTGCAGAAGACGAGGAGTGGGAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028834.3 ENSMUST00000123598.8 ENSMUST00000155470.8 |
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| CDS CAA 90 bp | CTCAGCTTCCACAAGACGTCCCTGCTCAGTATCTTAGGCAGCGCGTaGACCAGGAGGTCGGGATTTATAAAACTTAAATGGAAGATCAGG | + |
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Preference number: 6 (lower is better) Translates to: LSFHKTSLLSILGSA*TRRSGFIKLKWKIR Trigger: CCTGATCTTCCATTTAAGTTTTATAAATCCCGACCTCCTGGTCAACGCGCTGCCTAAGATACTGAGCAGGGACGTCTTGTGGAAGCTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS GCA 72 bp | AGAGCTGAGACACAAACACATAGTCTTCCATTATCTTaGCGAGCTCCTTCTCCTGGTCTGCACAGGAAGACT | + |
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Preference number: 6 (lower is better) Translates to: RAETQTHSLPLS*RAPSPGLHRKT Trigger: AGTCTTCCTGTGCAGACCAGGAGAAGGAGCTCGGCAAGATAATGGAAGACTATGTGTTTGTGTCTCAGCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS CCA 72 bp | AAAGCTTCCTGGTACTTCTTGCCGAGCTCCTTCTCCTaGTCTGCACAGGAAGACTCCAACTGTTGTAGTTTA | + |
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Preference number: 6 (lower is better) Translates to: KASWYFLPSSFS*SAQEDSNCCSL Trigger: TAAACTACAACAGTTGGAGTCTTCCTGTGCAGACCAGGAGAAGGAGCTCGGCAAGAAGTACCAGGAAGCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155470.8 |
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| CDS CAA 72 bp | CTTCAAAGCTTCCTGGTACTTCTTTATGCAGAGAGCTaGATCTTCACAGAGCTTGCCGAGCTCCTTCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: LQSFLVLLYAES*IFTELAELLLL Trigger: CAGGAGAAGGAGCTCGGCAAGCTCTGTGAAGATCAAGCTCTCTGCATAAAGAAGTACCAGGAAGCTTTGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123598.8 |
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| CDS GCA 72 bp | TCGAGAAGCAGCTCCTGGTTGGCTTCATCTATTCTCTaGATATCCCTTTCGAGGTCCATGTTCAAGCTGATA | + |
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Preference number: 6 (lower is better) Translates to: SRSSSWLASSIL*ISLSRSMFKLI Trigger: TATCAGCTTGAACATGGACCTCGAAAGGGATATGCAGAGAATAGATGAAGCCAACCAGGAGCTGCTTCTCGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028834.3 ENSMUST00000123598.8 ENSMUST00000155470.8 |
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| CDS CAA 90 bp | TTCTCCTGGTCTGCACAGGAAGACTCCAACTGTTGTAGTTTAACCTaGGACTCTTCTGGGGTTGTTTCTAGATCACCTTGTTCATACCTG | + |
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Preference number: 6 (lower is better) Translates to: FSWSAQEDSNCCSLT*DSSGVVSRSPCSYL Trigger: CAGGTATGAACAAGGTGATCTAGAAACAACCCCAGAAGAGTCCAAGGTTAAACTACAACAGTTGGAGTCTTCCTGTGCAGACCAGGAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028834.3 ENSMUST00000123598.8 ENSMUST00000155470.8 |
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| CDS CCA 72 bp | TTTCTTTTTCTTGTATCTCGAGAAGCAGCTCCTGGTTaGCTTCATCTATTCTCTGCATATCCCTTTCGAGGT | + |
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Preference number: 6 (lower is better) Translates to: FLFLVSREAAPG*LHLFSAYPFRG Trigger: ACCTCGAAAGGGATATGCAGAGAATAGATGAAGCCAACCAGGAGCTGCTTCTCGAGATACAAGAAAAAGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028834.3 ENSMUST00000123598.8 ENSMUST00000155470.8 |
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| CDS CAA 72 bp | TTTTCTTTTTCTTGTATCTCGAGAAGCAGCTCCTGGTaGGCTTCATCTATTCTCTGCATATCCCTTTCGAGG | + |
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Preference number: 6 (lower is better) Translates to: FSFSCISRSSSW*ASSILCISLSR Trigger: CCTCGAAAGGGATATGCAGAGAATAGATGAAGCCAACCAGGAGCTGCTTCTCGAGATACAAGAAAAAGAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028834.3 ENSMUST00000123598.8 ENSMUST00000155470.8 |
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| CDS CAA 72 bp | CTTCAAAGCTTCCTGGTACTTCTTTATGCAGAGAGCTaGATCTTCACAGAGCTGAGACACAAACACATAGTC | + |
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Preference number: 6 (lower is better) Translates to: LQSFLVLLYAES*IFTELRHKHIV Trigger: GACTATGTGTTTGTGTCTCAGCTCTGTGAAGATCAAGCTCTCTGCATAAAGAAGTACCAGGAAGCTTTGAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS CCA 72 bp | TCATTTTCTTTTTCTTGTATCTCGAGAAGCAGCTCCTaGTTGGCTTCATCTATTCTCTGCATATCCCTTTCG | + |
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Preference number: 6 (lower is better) Translates to: SFSFSCISRSSS*LASSILCISLS Trigger: CGAAAGGGATATGCAGAGAATAGATGAAGCCAACCAGGAGCTGCTTCTCGAGATACAAGAAAAAGAAAATGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028834.3 ENSMUST00000123598.8 ENSMUST00000155470.8 |
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| CDS CCA 72 bp | GCGTTGACCAGGAGGTCGGGATTTATAAAACTTAAATaGAAGATCAGGTATCCCAGCAATCTGATGAAAAAC | + |
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Preference number: 6 (lower is better) Translates to: ALTRRSGFIKLK*KIRYPSNLMKN Trigger: GTTTTTCATCAGATTGCTGGGATACCTGATCTTCCATTTAAGTTTTATAAATCCCGACCTCCTGGTCAACGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028834.3 |
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| CDS GCA 72 bp | TATTTAGGCTCGTACTCCTTTCTCTCTCAGAATCCATaGTTAAGACTTTTGATACTTCTCTCTCAAGGTATC | + |
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Preference number: 6 (lower is better) Translates to: YLGSYSFLSQNP*LRLLILLSQGI Trigger: GATACCTTGAGAGAGAAGTATCAAAAGTCTTAAGCATGGATTCTGAGAGAGAAAGGAGTACGAGCCTAAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028834.3 ENSMUST00000123598.8 ENSMUST00000155470.8 |
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