Pregenerated sensors for TMCO2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078577Ensembl transcript IDs: ENSMUST00000106268.4
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTCTCTATTTTATTGATACACCACTGCACACATGAGGGAAGCAGTGCTTTTCTGGTGGGCAAGGGACTCTaGCAGTCAGAGCAGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: FSILLIHHCTHEGSSAFLVGKGL*QSEQLQ Trigger: CTGCAGCTGCTCTGACTGTCAGAGTCCCTTGCCCAC...CAGAAAAGCACTGCTTCCCTCATGTGTGCAGTGGTGTATCAATAAAATAGAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS-3UTR TCA 90 bp | TTCTCTATTTTATTGATACACCACTGCACACATGAGGGAAGCAGTGCTTTTCTGTGTGGAAGTGAACCCTaGTGTGGGCAAGGGACTCTG | + |
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Preference number: 4 (lower is better) Translates to: FSILLIHHCTHEGSSAFLCGSEP*CGQGTL Trigger: CAGAGTCCCTTGCCCACATCAGGGTTCACTTCCACA...CAGAAAAGCACTGCTTCCCTCATGTGTGCAGTGGTGTATCAATAAAATAGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS-3UTR GCA 90 bp | TTCTCTATTTTATTGATACACCACTGCACACATGAGGGAAGCAGTGCTTTTCTGGACAGTCAGAGCAGCTaGAGTAGGGTTCAGAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: FSILLIHHCTHEGSSAFLDSQSS*SRVQRS Trigger: GCTCCTCTGAACCCTACTGCAGCTGCTCTGACTGTC...CAGAAAAGCACTGCTTCCCTCATGTGTGCAGTGGTGTATCAATAAAATAGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS-3UTR TCA 90 bp | TCTATTTTATTGATACACCACTGCACACATGAGGGAAGCAGTGCTTTTCTGGAAAGGAAATCCCAAGGATaGTTTGCACAGCTGGAGCGA | + |
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Preference number: 4 (lower is better) Translates to: SILLIHHCTHEGSSAFLERKSQG*FAQLER Trigger: TCGCTCCAGCTGTGCAAATCATCCTTGGGATTTCCT...TTCCAGAAAAGCACTGCTTCCCTCATGTGTGCAGTGGTGTATCAATAAAATAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS-3UTR TCA 90 bp | TCTATTTTATTGATACACCACTGCACACATGAGGGAAGCAGTGCTTTTCTGGAATTGGCTAGCAAAACCTaGAAAAAGTCTGAGCCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: SILLIHHCTHEGSSAFLELASKT*KKSEPF Trigger: GAAGGGCTCAGACTTTTTTCAGGTTTTGCTAGCCAA...TTCCAGAAAAGCACTGCTTCCCTCATGTGTGCAGTGGTGTATCAATAAAATAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS-3UTR TCA 90 bp | TTGATACACCACTGCACACATGAGGGAAGCAGTGCTTTTCTGGAAAAGATTGGAATATTATTATTGTCTTaGATCTGGCGACCGCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LIHHCTHEGSSAFLEKIGILLLS*IWRPLP Trigger: AGGAAGCGGTCGCCAGATTCAAGACAATAATAATAT...TCCAATCTTTTCCAGAAAAGCACTGCTTCCCTCATGTGTGCAGTGGTGTATCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS-3UTR GCA 90 bp | TTCTCTATTTTATTGATACACCACTGCACACATGAGGGAAGCAGTGCTTTTCTGATCCCAAGGATGATTTaGACAGCTGGAGCGAGATTA | + |
|
Preference number: 4 (lower is better) Translates to: FSILLIHHCTHEGSSAFLIPRMI*TAGARL Trigger: TAATCTCGCTCCAGCTGTGCAAATCATCCTTGGGAT...CAGAAAAGCACTGCTTCCCTCATGTGTGCAGTGGTGTATCAATAAAATAGAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS-3UTR GCA 90 bp | TTGATACACCACTGCACACATGAGGGAAGCAGTGCTTTTCTGGAAAAGATTGGATCTGAATTGACCGAATaGTTCGTTTCCATAAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: LIHHCTHEGSSAFLEKIGSELTE*FVSIRQ Trigger: TTGCCTTATGGAAACGAAGCATTCGGTCAATTCAGA...TCCAATCTTTTCCAGAAAAGCACTGCTTCCCTCATGTGTGCAGTGGTGTATCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS-3UTR CCA 90 bp | TTCTCTATTTTATTGATACACCACTGCACACATGAGGGAAGCAGTGCTTTTCTGCGCTTCCTTCTGGGTTaGCTAGCAAAACCTGAAAAA | + |
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Preference number: 4 (lower is better) Translates to: FSILLIHHCTHEGSSAFLRFLLG*LAKPEK Trigger: TTTTTCAGGTTTTGCTAGCCAACCCAGAAGGAAGCG...CAGAAAAGCACTGCTTCCCTCATGTGTGCAGTGGTGTATCAATAAAATAGAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS-3UTR GCA 90 bp | TTCTCTATTTTATTGATACACCACTGCACACATGAGGGAAGCAGTGCTTTTCTGTTCAAAATTTTCTCTTaGAGACCCAACGACAGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: FSILLIHHCTHEGSSAFLFKIFS*RPNDRK Trigger: CTTCCTGTCGTTGGGTCTGCAAGAGAAAATTTTGAA...CAGAAAAGCACTGCTTCCCTCATGTGTGCAGTGGTGTATCAATAAAATAGAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS-3UTR TCA 90 bp | TTATTGATACACCACTGCACACATGAGGGAAGCAGTGCTTTTCTGGAAAAGATTAACATCACTATTTTCTaGATTGACCGAATGCTTCGT | + |
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Preference number: 4 (lower is better) Translates to: LLIHHCTHEGSSAFLEKINITIF*IDRMLR Trigger: ACGAAGCATTCGGTCAATTCAGAAAATAGTGATGTT...AATCTTTTCCAGAAAAGCACTGCTTCCCTCATGTGTGCAGTGGTGTATCAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS-3UTR CAA 90 bp | TTGATACACCACTGCACACATGAGGGAAGCAGTGCTTTTCTGGAAAAGATTGGAAATCCCAAGGATGATTaGCACAGCTGGAGCGAGATT | + |
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Preference number: 5 (lower is better) Translates to: LIHHCTHEGSSAFLEKIGNPKDD*HSWSEI Trigger: AATCTCGCTCCAGCTGTGCAAATCATCCTTGGGATT...TCCAATCTTTTCCAGAAAAGCACTGCTTCCCTCATGTGTGCAGTGGTGTATCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS TCA 90 bp | TGCACAGCTGGAGCGAGATTATCTAGTATTCCCAAGTTTGTTGGCTaGGGCGCACTAGTAGTCTCTCCTATAAACATTGCTTGTAACCAA | + |
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Preference number: 5 (lower is better) Translates to: CTAGARLSSIPKFVG*GALVVSPINIACNQ Trigger: TTGGTTACAAGCAATGTTTATAGGAGAGACTACTAGTGCGCCTCAGCCAACAAACTTGGGAATACTAGATAATCTCGCTCCAGCTGTGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS GCA 90 bp | AGTCCAATTGCCAACAAAGTCAAAAAGGAAATCCCAAGGATGATTTaGACAGCTGGAGCGAGATTATCTAGTATTCCCAAGTTTGTTGGC | + |
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Preference number: 5 (lower is better) Translates to: SPIANKVKKEIPRMI*TAGARLSSIPKFVG Trigger: GCCAACAAACTTGGGAATACTAGATAATCTCGCTCCAGCTGTGCAAATCATCCTTGGGATTTCCTTTTTGACTTTGTTGGCAATTGGACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS-3UTR CAA 90 bp | TCTATTTTATTGATACACCACTGCACACATGAGGGAAGCAGTGCTTTTCTGGAAGCCCTTCTTGTAAAGTaGGTAGAGTGTGATCACAAA | + |
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Preference number: 5 (lower is better) Translates to: SILLIHHCTHEGSSAFLEALLVK*VECDHK Trigger: TTTGTGATCACACTCTACCAACTTTACAAGAAGGGC...TTCCAGAAAAGCACTGCTTCCCTCATGTGTGCAGTGGTGTATCAATAAAATAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS-3UTR CAA 90 bp | TTATTGATACACCACTGCACACATGAGGGAAGCAGTGCTTTTCTGGAAAAGATTGATATTATTATTGTCTaGAATCTGGCGACCGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: LLIHHCTHEGSSAFLEKIDIIIV*NLATAS Trigger: GGAAGCGGTCGCCAGATTCAAGACAATAATAATATC...AATCTTTTCCAGAAAAGCACTGCTTCCCTCATGTGTGCAGTGGTGTATCAATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS-3UTR CAA 90 bp | TTCTCTATTTTATTGATACACCACTGCACACATGAGGGAAGCAGTGCTTTTCTGTCACTATTTTCTGAATaGACCGAATGCTTCGTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: FSILLIHHCTHEGSSAFLSLFSE*TECFVS Trigger: GGAAACGAAGCATTCGGTCAATTCAGAAAATAGTGA...CAGAAAAGCACTGCTTCCCTCATGTGTGCAGTGGTGTATCAATAAAATAGAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS-3UTR CAA 90 bp | TCTATTTTATTGATACACCACTGCACACATGAGGGAAGCAGTGCTTTTCTGGAATTTCAAAATTTTCTCTaGCAGACCCAACGACAGGAA | + |
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Preference number: 5 (lower is better) Translates to: SILLIHHCTHEGSSAFLEFQNFL*QTQRQE Trigger: TTCCTGTCGTTGGGTCTGCAAGAGAAAATTTTGAAA...TTCCAGAAAAGCACTGCTTCCCTCATGTGTGCAGTGGTGTATCAATAAAATAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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| CDS TCA 72 bp | GGAGCGAGATTATCTAGTATTCCCAAGTTTGTTGGCTaGGGCGCACTAGTAGTCTCTCCTATAAACATTGCT | + |
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Preference number: 6 (lower is better) Translates to: GARLSSIPKFVG*GALVVSPINIA Trigger: AGCAATGTTTATAGGAGAGACTACTAGTGCGCCTCAGCCAACAAACTTGGGAATACTAGATAATCTCGCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106268.4 |
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