RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMBIM4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020225

Ensembl transcript IDs: ENSMUST00000020446.11, ENSMUST00000134797.8, ENSMUST00000141206.8

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp TTCCAGAAACTTCAACAGGTGCAGGAAGAGGTTGATGATATCCATGTAGAGACTTCGGGAGAGAGTCTGTaGATCAGCGAGTGTGTATCA +
Preference number: 2 (lower is better)
Translates to: FQKLQQVQEEVDDIHVETSGESL*ISECVS
Trigger: TGATACACACTCGCTGATGCACAGACTCTCTCCCGA...AGTCTCTACATGGATATCATCAACCTCTTCCTGCACCTGTTGAAGTTTCTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141206.8
3UTR TCA 72 bp TCCACAAACCAGCAAACAACCCTGCTCCGAATTTGGTaGAATCTCTCTTTGATTGTAGAGTATAGGCAGTCA +
Preference number: 3 (lower is better)
Translates to: STNQQTTLLRIW*NLSLIVEYRQS
Trigger: TGACTGCCTATACTCTACAATCAAAGAGAGATTTCACCAAATTCGGAGCAGGGTTGTTTGCTGGTTTGTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141206.8
CDS-3UTR CCA 90 bp TTCCAGAAACTTCAACAGGTGCAGGAAGAGGTTGATGATATCCATGTAGAGACTTGCGGATGTGCACGCTaGCCGACGCCACGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: FQKLQQVQEEVDDIHVETCGCAR*PTPRSC
Trigger: GCAGCTGCGTGGCGTCGGCCAGCGTGCACATCCGCA...AGTCTCTACATGGATATCATCAACCTCTTCCTGCACCTGTTGAAGTTTCTGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141206.8
CDS-3UTR TCA 90 bp TGGCAGCGATCACGTACTCTTCGGGAGAGAGTCTGTGCATCAGCGAGTGTGTATTACTGTAGACTTTTCTaGGAAAGGCCATGCGGATGT +
Preference number: 4 (lower is better)
Translates to: WQRSRTLRERVCASASVYYCRLF*ERPCGC
Trigger: ACATCCGCATGGCCTTTCTCAGAAAAGTCTACAGTA...ATACACACTCGCTGATGCACAGACTCTCTCCCGAAGAGTACGTGATCGCTGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141206.8
CDS-3UTR CCA 90 bp ACACACAATTCAGTTTTATTCTCCCATTGTTACCAATACACACACACAATAGCATGCGGATGTGCACGCTaGCCGACGCCACGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: THNSVLFSHCYQYTHTIACGCAR*PTPRSC
Trigger: GCAGCTGCGTGGCGTCGGCCAGCGTGCACATCCGCA...TGCTATTGTGTGTGTGTATTGGTAACAATGGGAGAATAAAACTGAATTGTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134797.8
CDS-3UTR GCA 90 bp ACACACAATTCAGTTTTATTCTCCCATTGTTACCAATACACACACACAATAGCAGGATGCGTGTGTCTGTaGAGAGTCAGTGCAAAGATC +
Preference number: 4 (lower is better)
Translates to: THNSVLFSHCYQYTHTIAGCVCL*RVSAKI
Trigger: GATCTTTGCACTGACTCTGCACAGACACACGCATCC...TGCTATTGTGTGTGTGTATTGGTAACAATGGGAGAATAAAACTGAATTGTGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134797.8
CDS-3UTR GCA 90 bp ACACACAATTCAGTTTTATTCTCCCATTGTTACCAATACACACACACAATAGCATCTGTGCAGAGTCAGTaGAAAGATCAAGCCCAGAGA +
Preference number: 4 (lower is better)
Translates to: THNSVLFSHCYQYTHTIASVQSQ*KDQAQR
Trigger: TCTCTGGGCTTGATCTTTGCACTGACTCTGCACAGA...TGCTATTGTGTGTGTGTATTGGTAACAATGGGAGAATAAAACTGAATTGTGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134797.8
CDS-3UTR TCA 90 bp ACACACAATTCAGTTTTATTCTCCCATTGTTACCAATACACACACACAATAGCATACTGTAGACTTTTCTaGGAAAGGCCATGCGGATGT +
Preference number: 4 (lower is better)
Translates to: THNSVLFSHCYQYTHTIAYCRLF*ERPCGC
Trigger: ACATCCGCATGGCCTTTCTCAGAAAAGTCTACAGTA...TGCTATTGTGTGTGTGTATTGGTAACAATGGGAGAATAAAACTGAATTGTGTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000134797.8
CDS TCA 90 bp CCATGCGGATGTGCACGCTGGCCGACGCCACGCAGCTGCCGTAGTTaGAGTCATCCTCGATGGACGAGCGGGGATAGCCCGGGTCCGTGT +
Preference number: 5 (lower is better)
Translates to: PCGCARWPTPRSCRS*SHPRWTSGDSPGPC
Trigger: ACACGGACCCGGGCTATCCCCGCTCGTCCATCGAGGATGACTTCAACTACGGCAGCTGCGTGGCGTCGGCCAGCGTGCACATCCGCATGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020446.11
ENSMUST00000134797.8
ENSMUST00000141206.8
CDS CCA 90 bp CCCAGAGATCCCAGAGCAAACACCACAATTAAGGCAGGGCTTTCATaGACAAATGTCCGCAGAGCTTGGAAATACAGGAACAGGGCAGAG +
Preference number: 5 (lower is better)
Translates to: PRDPRANTTIKAGLS*TNVRRAWKYRNRAE
Trigger: CTCTGCCCTGTTCCTGTATTTCCAAGCTCTGCGGACATTTGTCCATGAAAGCCCTGCCTTAATTGTGGTGTTTGCTCTGGGATCTCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020446.11
ENSMUST00000134797.8
CDS CCA 90 bp ACCACAATTAAGGCAGGGCTTTCATGGACAAATGTCCGCAGAGCTTaGAAATACAGGAACAGGGCAGAGGTCACTGTAGTCAGGAGGACT +
Preference number: 5 (lower is better)
Translates to: TTIKAGLSWTNVRRA*KYRNRAEVTVVRRT
Trigger: AGTCCTCCTGACTACAGTGACCTCTGCCCTGTTCCTGTATTTCCAAGCTCTGCGGACATTTGTCCATGAAAGCCCTGCCTTAATTGTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020446.11
ENSMUST00000134797.8
CDS-3UTR CAA 90 bp GAGGTTGATGATATCCATGTAGAGACTGATGGCAGCGATCACGTACTCTTCGGGAAATGTCCGCAGAGCTaGGAAATACAGGAACAGGGC +
Preference number: 5 (lower is better)
Translates to: EVDDIHVETDGSDHVLFGKCPQS*EIQEQG
Trigger: GCCCTGTTCCTGTATTTCCAAGCTCTGCGGACATTT...CCCGAAGAGTACGTGATCGCTGCCATCAGTCTCTACATGGATATCATCAACCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141206.8
CDS TCA 90 bp ATATACATCATAGAAGGTAACAACAGCTGCCACGGCCAGGGATTCTaGCAGTGTCTTTCATGGACAAATGTCCGCAGAGCTTGGAAATAC +
Preference number: 5 (lower is better)
Translates to: IYIIEGNNSCHGQGF*QCLSWTNVRRAWKY
Trigger: GTATTTCCAAGCTCTGCGGACATTTGTCCATGAAAGACACTGTCAGAATCCCTGGCCGTGGCAGCTGTTGTTACCTTCTATGATGTATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141206.8
CDS-3UTR CAA 90 bp ACACACAATTCAGTTTTATTCTCCCATTGTTACCAATACACACACACAATAGCAAAATGTCCGCAGAGCTaGGAAATACAGGAACAGGGC +
Preference number: 5 (lower is better)
Translates to: THNSVLFSHCYQYTHTIAKCPQS*EIQEQG
Trigger: GCCCTGTTCCTGTATTTCCAAGCTCTGCGGACATTT...TGCTATTGTGTGTGTGTATTGGTAACAATGGGAGAATAAAACTGAATTGTGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000134797.8
CDS CAA 90 bp CCAGGGATTCTGACAGTGTCTTTCATGGACAAATGTCCGCAGAGCTaGGAAATACAGGAACAGGGCAGAGGTCACTGTAGTCAGGAGGAC +
Preference number: 6 (lower is better)
Translates to: PGILTVSFMDKCPQS*EIQEQGRGHCSQED
Trigger: GTCCTCCTGACTACAGTGACCTCTGCCCTGTTCCTGTATTTCCAAGCTCTGCGGACATTTGTCCATGAAAGACACTGTCAGAATCCCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141206.8
CDS CCA 72 bp AAGGCAGGGCTTTCATGGACAAATGTCCGCAGAGCTTaGAAATACAGGAACAGGGCAGAGGTCACTGTAGTC +
Preference number: 6 (lower is better)
Translates to: KAGLSWTNVRRA*KYRNRAEVTVV
Trigger: GACTACAGTGACCTCTGCCCTGTTCCTGTATTTCCAAGCTCTGCGGACATTTGTCCATGAAAGCCCTGCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020446.11
ENSMUST00000134797.8
CDS TCA 72 bp ATAGAAGGTAACAACAGCTGCCACGGCCAGGGATTCTaGCAGTGTCTTTCATGGACAAATGTCCGCAGAGCT +
Preference number: 6 (lower is better)
Translates to: IEGNNSCHGQGF*QCLSWTNVRRA
Trigger: AGCTCTGCGGACATTTGTCCATGAAAGACACTGTCAGAATCCCTGGCCGTGGCAGCTGTTGTTACCTTCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141206.8
CDS CAA 72 bp CTGACAGTGTCTTTCATGGACAAATGTCCGCAGAGCTaGGAAATACAGGAACAGGGCAGAGGTCACTGTAGT +
Preference number: 6 (lower is better)
Translates to: LTVSFMDKCPQS*EIQEQGRGHCS
Trigger: ACTACAGTGACCTCTGCCCTGTTCCTGTATTTCCAAGCTCTGCGGACATTTGTCCATGAAAGACACTGTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141206.8
CDS CAA 72 bp CAAGCCAAGAAAGACTGCAGTAGTCATTATAAACGCTaGCAGAACCAGATATACATCATAGAAGGTAACAAC +
Preference number: 6 (lower is better)
Translates to: QAKKDCSSHYKR*QNQIYIIEGNN
Trigger: GTTGTTACCTTCTATGATGTATATCTGGTTCTGCAAGCGTTTATAATGACTACTGCAGTCTTTCTTGGCTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020446.11