Pregenerated sensors for TMA7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091537Ensembl transcript IDs: ENSMUST00000167504.3, ENSMUST00000192801.2
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | ACTTCCATTTATTTCTTGGAGAGTCTTTATGTCCTGAGCGCTGGTTaGGTAGAGACAATGAAGCTCAAGAGGTCAAGGAAGGCTCGCTGG | + |
Preference number: 1 (lower is better) Translates to: TSIYFLESLYVLSAG*VETMKLKRSRKARW Trigger: CCAGCGAGCCTTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCAACCAGCGCTCAGGACATAAAGACTCTCCAAGAAATAAATGGAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192801.2 |
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3UTR CCA 90 bp | GTTAACTTCCATTTATTTCTTGGAGAGTCTTTATGTCCTGAGCGCTaGTTGCGTAGAGACAATGAAGCTCAAGAGGTCAAGGAAGGCTCG | + |
Preference number: 1 (lower is better) Translates to: VNFHLFLGESLCPER*LRRDNEAQEVKEGS Trigger: CGAGCCTTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCAACCAGCGCTCAGGACATAAAGACTCTCCAAGAAATAAATGGAAGTTAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192801.2 |
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3UTR CAA 90 bp | CGTGCCTATTCGGAACTGCTCCAACTGTTAACTTCCATTTATTTCTaGGAGAGTCTTTATGTCCTGAGCGCTGGTTGCGTAGAGACAATG | + |
Preference number: 2 (lower is better) Translates to: RAYSELLQLLTSIYF*ESLYVLSAGCVETM Trigger: CATTGTCTCTACGCAACCAGCGCTCAGGACATAAAGACTCTCCAAGAAATAAATGGAAGTTAACAGTTGGAGCAGTTCCGAATAGGCACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192801.2 |
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3UTR-3UTR CCA 90 bp | AGAAGTATCCCACTAGATAAACAAGCACACACAAATGATAGGCTTTTAAAGGAGATCCAGATGTTTGACTaGTCACAGGATAACACTTCA | + |
Preference number: 2 (lower is better) Translates to: RSIPLDKQAHTNDRLLKEIQMFD*SQDNTS Trigger: TGAAGTGTTATCCTGTGACCAGTCAAACATCTGGAT...CTCCTTTAAAAGCCTATCATTTGTGTGTGCTTGTTTATCTAGTGGGATACTTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167504.3 |
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3UTR-3UTR CCA 90 bp | AGAAGTATCCCACTAGATAAACAAGCACACACAAATGATAGGCTTTTAAAGGAGATTCTAGCTATTACATaGCAAAGATGTTATGACAGG | + |
Preference number: 2 (lower is better) Translates to: RSIPLDKQAHTNDRLLKEILAIT*QRCYDR Trigger: CCTGTCATAACATCTTTGCCATGTAATAGCTAGAAT...CTCCTTTAAAAGCCTATCATTTGTGTGTGCTTGTTTATCTAGTGGGATACTTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167504.3 |
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3UTR TCA 72 bp | TCAAGAGGTCAAGGAAGGCTCGCTGGGAGTGGTCCTTaGATTACCCAACAGATTGAGGGGGAAATAGCAAGA | + |
Preference number: 3 (lower is better) Translates to: SRGQGRLAGSGP*ITQQIEGEIAR Trigger: TCTTGCTATTTCCCCCTCAATCTGTTGGGTAATTCAAGGACCACTCCCAGCGAGCCTTCCTTGACCTCTTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000192801.2 |
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3UTR GCA 72 bp | TATTTCTTGGAGAGTCTTTATGTCCTGAGCGCTGGTTaGGTAGAGACAATGAAGCTCAAGAGGTCAAGGAAG | + |
Preference number: 3 (lower is better) Translates to: YFLESLYVLSAG*VETMKLKRSRK Trigger: CTTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCAACCAGCGCTCAGGACATAAAGACTCTCCAAGAAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192801.2 |
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3UTR-3UTR CAA 90 bp | AGAAGTATCCCACTAGATAAACAAGCACACACAAATGATAGGCTTTTAAAGGAGAGGGAATCCAGATGTTaGACTGGTCACAGGATAACA | + |
Preference number: 3 (lower is better) Translates to: RSIPLDKQAHTNDRLLKERESRC*TGHRIT Trigger: TGTTATCCTGTGACCAGTCAAACATCTGGATTCCCT...CTCCTTTAAAAGCCTATCATTTGTGTGTGCTTGTTTATCTAGTGGGATACTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167504.3 |
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CDS-3UTR CCA 90 bp | CTGAGCGCTGGTTGCGTAGAGACAATGAAGCTCAAGAGGTCAAGGAAGGCTCGCGACAAGGATGCCAGGTaGATGCCTCCTCTTTGCGAC | + |
Preference number: 4 (lower is better) Translates to: LSAGCVETMKLKRSRKARDKDAR*MPPLCD Trigger: GTCGCAAAGAGGAGGCATCCACCTGGCATCCTTGTC...GCGAGCCTTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCAACCAGCGCTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192801.2 |
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CDS-3UTR GCA 90 bp | GGTTGCGTAGAGACAATGAAGCTCAAGAGGTCAAGGAAGGCTCGCTGGGAGTGGTGGATGCCTCCTCTTTaGGACAGACTTCATGGAGGA | + |
Preference number: 4 (lower is better) Translates to: GCVETMKLKRSRKARWEWWMPPL*DRLHGG Trigger: TCCTCCATGAAGTCTGTCGCAAAGAGGAGGCATCCA...CCACTCCCAGCGAGCCTTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCAACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192801.2 |
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CDS-3UTR CCA 90 bp | AGCGCTGGTTGCGTAGAGACAATGAAGCTCAAGAGGTCAAGGAAGGCTCGCTGGAGCAATGATTTGAGTTaGGCTTGGGTGTATGACTGG | + |
Preference number: 4 (lower is better) Translates to: SAGCVETMKLKRSRKARWSNDLS*AWVYDW Trigger: CCAGTCATACACCCAAGCCCAACTCAAATCATTGCT...CCAGCGAGCCTTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCAACCAGCGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192801.2 |
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CDS-3UTR TCA 90 bp | GAACGGCGTGCCTATTCGGAACTGCTCCAACTGTTAACTTCCATTTATTTCTTGGGAGGAGCAATGATTTaGGTTGGGCTTGGGTGTATG | + |
Preference number: 4 (lower is better) Translates to: ERRAYSELLQLLTSIYFLGGAMI*VGLGCM Trigger: CATACACCCAAGCCCAACTCAAATCATTGCTCCTCC...CAAGAAATAAATGGAAGTTAACAGTTGGAGCAGTTCCGAATAGGCACGCCGTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192801.2 |
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3UTR CAA 72 bp | TTATTTCTTGGAGAGTCTTTATGTCCTGAGCGCTGGTaGCGTAGAGACAATGAAGCTCAAGAGGTCAAGGAA | + |
Preference number: 4 (lower is better) Translates to: LFLGESLCPERW*RRDNEAQEVKE Trigger: TTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCAACCAGCGCTCAGGACATAAAGACTCTCCAAGAAATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192801.2 |
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3UTR CAA 72 bp | TCGGAACTGCTCCAACTGTTAACTTCCATTTATTTCTaGGAGAGTCTTTATGTCCTGAGCGCTGGTTGCGTA | + |
Preference number: 4 (lower is better) Translates to: SELLQLLTSIYF*ESLYVLSAGCV Trigger: TACGCAACCAGCGCTCAGGACATAAAGACTCTCCAAGAAATAAATGGAAGTTAACAGTTGGAGCAGTTCCGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192801.2 |
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CDS-3UTR CAA 90 bp | TGCGTAGAGACAATGAAGCTCAAGAGGTCAAGGAAGGCTCGCTGGGAGTGGTCCGTGGATGCCTCCTCTTaGCGACAGACTTCATGGAGG | + |
Preference number: 5 (lower is better) Translates to: CVETMKLKRSRKARWEWSVDASS*RQTSWR Trigger: CCTCCATGAAGTCTGTCGCAAAGAGGAGGCATCCAC...GGACCACTCCCAGCGAGCCTTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192801.2 |
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CDS-3UTR CAA 90 bp | TGCGTAGAGACAATGAAGCTCAAGAGGTCAAGGAAGGCTCGCTGGGAGTGGTCCTGGAGGAGCAATGATTaGAGTTGGGCTTGGGTGTAT | + |
Preference number: 5 (lower is better) Translates to: CVETMKLKRSRKARWEWSWRSND*SWAWVY Trigger: ATACACCCAAGCCCAACTCAAATCATTGCTCCTCCA...GGACCACTCCCAGCGAGCCTTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192801.2 |
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CDS TCA 72 bp | CCTCTTTGCGACAGACTTCATGGAGGAGCAATGATTTaGGTTGGGCTTGGGTGTATGACTGGCTTTTATGAG | + |
Preference number: 6 (lower is better) Translates to: PLCDRLHGGAMI*VGLGCMTGFYE Trigger: CTCATAAAAGCCAGTCATACACCCAAGCCCAACTCAAATCATTGCTCCTCCATGAAGTCTGTCGCAAAGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192801.2 |