RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMA7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091537

Ensembl transcript IDs: ENSMUST00000167504.3, ENSMUST00000192801.2

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACTTCCATTTATTTCTTGGAGAGTCTTTATGTCCTGAGCGCTGGTTaGGTAGAGACAATGAAGCTCAAGAGGTCAAGGAAGGCTCGCTGG +
Preference number: 1 (lower is better)
Translates to: TSIYFLESLYVLSAG*VETMKLKRSRKARW
Trigger: CCAGCGAGCCTTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCAACCAGCGCTCAGGACATAAAGACTCTCCAAGAAATAAATGGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192801.2
3UTR CCA 90 bp GTTAACTTCCATTTATTTCTTGGAGAGTCTTTATGTCCTGAGCGCTaGTTGCGTAGAGACAATGAAGCTCAAGAGGTCAAGGAAGGCTCG +
Preference number: 1 (lower is better)
Translates to: VNFHLFLGESLCPER*LRRDNEAQEVKEGS
Trigger: CGAGCCTTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCAACCAGCGCTCAGGACATAAAGACTCTCCAAGAAATAAATGGAAGTTAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192801.2
3UTR CAA 90 bp CGTGCCTATTCGGAACTGCTCCAACTGTTAACTTCCATTTATTTCTaGGAGAGTCTTTATGTCCTGAGCGCTGGTTGCGTAGAGACAATG +
Preference number: 2 (lower is better)
Translates to: RAYSELLQLLTSIYF*ESLYVLSAGCVETM
Trigger: CATTGTCTCTACGCAACCAGCGCTCAGGACATAAAGACTCTCCAAGAAATAAATGGAAGTTAACAGTTGGAGCAGTTCCGAATAGGCACG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192801.2
3UTR-3UTR CCA 90 bp AGAAGTATCCCACTAGATAAACAAGCACACACAAATGATAGGCTTTTAAAGGAGATCCAGATGTTTGACTaGTCACAGGATAACACTTCA +
Preference number: 2 (lower is better)
Translates to: RSIPLDKQAHTNDRLLKEIQMFD*SQDNTS
Trigger: TGAAGTGTTATCCTGTGACCAGTCAAACATCTGGAT...CTCCTTTAAAAGCCTATCATTTGTGTGTGCTTGTTTATCTAGTGGGATACTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167504.3
3UTR-3UTR CCA 90 bp AGAAGTATCCCACTAGATAAACAAGCACACACAAATGATAGGCTTTTAAAGGAGATTCTAGCTATTACATaGCAAAGATGTTATGACAGG +
Preference number: 2 (lower is better)
Translates to: RSIPLDKQAHTNDRLLKEILAIT*QRCYDR
Trigger: CCTGTCATAACATCTTTGCCATGTAATAGCTAGAAT...CTCCTTTAAAAGCCTATCATTTGTGTGTGCTTGTTTATCTAGTGGGATACTTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167504.3
3UTR TCA 72 bp TCAAGAGGTCAAGGAAGGCTCGCTGGGAGTGGTCCTTaGATTACCCAACAGATTGAGGGGGAAATAGCAAGA +
Preference number: 3 (lower is better)
Translates to: SRGQGRLAGSGP*ITQQIEGEIAR
Trigger: TCTTGCTATTTCCCCCTCAATCTGTTGGGTAATTCAAGGACCACTCCCAGCGAGCCTTCCTTGACCTCTTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000192801.2
3UTR GCA 72 bp TATTTCTTGGAGAGTCTTTATGTCCTGAGCGCTGGTTaGGTAGAGACAATGAAGCTCAAGAGGTCAAGGAAG +
Preference number: 3 (lower is better)
Translates to: YFLESLYVLSAG*VETMKLKRSRK
Trigger: CTTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCAACCAGCGCTCAGGACATAAAGACTCTCCAAGAAATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192801.2
3UTR-3UTR CAA 90 bp AGAAGTATCCCACTAGATAAACAAGCACACACAAATGATAGGCTTTTAAAGGAGAGGGAATCCAGATGTTaGACTGGTCACAGGATAACA +
Preference number: 3 (lower is better)
Translates to: RSIPLDKQAHTNDRLLKERESRC*TGHRIT
Trigger: TGTTATCCTGTGACCAGTCAAACATCTGGATTCCCT...CTCCTTTAAAAGCCTATCATTTGTGTGTGCTTGTTTATCTAGTGGGATACTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167504.3
CDS-3UTR CCA 90 bp CTGAGCGCTGGTTGCGTAGAGACAATGAAGCTCAAGAGGTCAAGGAAGGCTCGCGACAAGGATGCCAGGTaGATGCCTCCTCTTTGCGAC +
Preference number: 4 (lower is better)
Translates to: LSAGCVETMKLKRSRKARDKDAR*MPPLCD
Trigger: GTCGCAAAGAGGAGGCATCCACCTGGCATCCTTGTC...GCGAGCCTTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCAACCAGCGCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192801.2
CDS-3UTR GCA 90 bp GGTTGCGTAGAGACAATGAAGCTCAAGAGGTCAAGGAAGGCTCGCTGGGAGTGGTGGATGCCTCCTCTTTaGGACAGACTTCATGGAGGA +
Preference number: 4 (lower is better)
Translates to: GCVETMKLKRSRKARWEWWMPPL*DRLHGG
Trigger: TCCTCCATGAAGTCTGTCGCAAAGAGGAGGCATCCA...CCACTCCCAGCGAGCCTTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192801.2
CDS-3UTR CCA 90 bp AGCGCTGGTTGCGTAGAGACAATGAAGCTCAAGAGGTCAAGGAAGGCTCGCTGGAGCAATGATTTGAGTTaGGCTTGGGTGTATGACTGG +
Preference number: 4 (lower is better)
Translates to: SAGCVETMKLKRSRKARWSNDLS*AWVYDW
Trigger: CCAGTCATACACCCAAGCCCAACTCAAATCATTGCT...CCAGCGAGCCTTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCAACCAGCGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192801.2
CDS-3UTR TCA 90 bp GAACGGCGTGCCTATTCGGAACTGCTCCAACTGTTAACTTCCATTTATTTCTTGGGAGGAGCAATGATTTaGGTTGGGCTTGGGTGTATG +
Preference number: 4 (lower is better)
Translates to: ERRAYSELLQLLTSIYFLGGAMI*VGLGCM
Trigger: CATACACCCAAGCCCAACTCAAATCATTGCTCCTCC...CAAGAAATAAATGGAAGTTAACAGTTGGAGCAGTTCCGAATAGGCACGCCGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192801.2
3UTR CAA 72 bp TTATTTCTTGGAGAGTCTTTATGTCCTGAGCGCTGGTaGCGTAGAGACAATGAAGCTCAAGAGGTCAAGGAA +
Preference number: 4 (lower is better)
Translates to: LFLGESLCPERW*RRDNEAQEVKE
Trigger: TTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCAACCAGCGCTCAGGACATAAAGACTCTCCAAGAAATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192801.2
3UTR CAA 72 bp TCGGAACTGCTCCAACTGTTAACTTCCATTTATTTCTaGGAGAGTCTTTATGTCCTGAGCGCTGGTTGCGTA +
Preference number: 4 (lower is better)
Translates to: SELLQLLTSIYF*ESLYVLSAGCV
Trigger: TACGCAACCAGCGCTCAGGACATAAAGACTCTCCAAGAAATAAATGGAAGTTAACAGTTGGAGCAGTTCCGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192801.2
CDS-3UTR CAA 90 bp TGCGTAGAGACAATGAAGCTCAAGAGGTCAAGGAAGGCTCGCTGGGAGTGGTCCGTGGATGCCTCCTCTTaGCGACAGACTTCATGGAGG +
Preference number: 5 (lower is better)
Translates to: CVETMKLKRSRKARWEWSVDASS*RQTSWR
Trigger: CCTCCATGAAGTCTGTCGCAAAGAGGAGGCATCCAC...GGACCACTCCCAGCGAGCCTTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192801.2
CDS-3UTR CAA 90 bp TGCGTAGAGACAATGAAGCTCAAGAGGTCAAGGAAGGCTCGCTGGGAGTGGTCCTGGAGGAGCAATGATTaGAGTTGGGCTTGGGTGTAT +
Preference number: 5 (lower is better)
Translates to: CVETMKLKRSRKARWEWSWRSND*SWAWVY
Trigger: ATACACCCAAGCCCAACTCAAATCATTGCTCCTCCA...GGACCACTCCCAGCGAGCCTTCCTTGACCTCTTGAGCTTCATTGTCTCTACGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192801.2
CDS TCA 72 bp CCTCTTTGCGACAGACTTCATGGAGGAGCAATGATTTaGGTTGGGCTTGGGTGTATGACTGGCTTTTATGAG +
Preference number: 6 (lower is better)
Translates to: PLCDRLHGGAMI*VGLGCMTGFYE
Trigger: CTCATAAAAGCCAGTCATACACCCAAGCCCAACTCAAATCATTGCTCCTCCATGAAGTCTGTCGCAAAGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192801.2