Pregenerated sensors for TM9SF5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079584Ensembl transcript IDs: ENSMUST00000114725.3
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CAGGTAGTGGCCAAGAAACACAGCAACAGCCACCACTTCAGCCCGTaGAGGCCAGGGCAGAGTTTGGTTTCCACACGGCGACCACTGAGA | + |
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Preference number: 5 (lower is better) Translates to: QVVAKKHSNSHHFSP*RPGQSLVSTRRPLR Trigger: TCTCAGTGGTCGCCGTGTGGAAACCAAACTCTGCCCTGGCCTTCACGGGCTGAAGTGGTGGCTGTTGCTGTGTTTCTTGGCCACTACCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114725.3 |
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| CDS TCA 90 bp | CTTGACCAAGAAGGATGGACAGCAACATGCCATGCTCTGGGAGCCTaGATAGATTCCCATGAATCAACCTCCAACCAAACAGCCTCCGGT | + |
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Preference number: 5 (lower is better) Translates to: LDQEGWTATCHALGA*IDSHESTSNQTASG Trigger: ACCGGAGGCTGTTTGGTTGGAGGTTGATTCATGGGAATCTATTCAGGCTCCCAGAGCATGGCATGTTGCTGTCCATCCTTCTTGGTCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114725.3 |
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| CDS TCA 90 bp | GCCAAAAATAAAGACAGAAATGTCATTATGAAAACTTGTGTTCCTTaGCCAAGAAGGATGGACAGCAACATGCCATGCTCTGGGAGCCTG | + |
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Preference number: 5 (lower is better) Translates to: AKNKDRNVIMKTCVP*PRRMDSNMPCSGSL Trigger: CAGGCTCCCAGAGCATGGCATGTTGCTGTCCATCCTTCTTGGTCAAGGAACACAAGTTTTCATAATGACATTTCTGTCTTTATTTTTGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114725.3 |
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| CDS TCA 72 bp | GCCAAGAAACACAGCAACAGCCACCACTTCAGCCCGTaGAGGCCAGGGCAGAGTTTGGTTTCCACACGGCGA | + |
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Preference number: 6 (lower is better) Translates to: AKKHSNSHHFSP*RPGQSLVSTRR Trigger: TCGCCGTGTGGAAACCAAACTCTGCCCTGGCCTTCACGGGCTGAAGTGGTGGCTGTTGCTGTGTTTCTTGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114725.3 |
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| CDS TCA 72 bp | AACATGCCATGCTCTGGGAGCCTGAATAGATTCCCATaGATCAACCTCCAACCAAACAGCCTCCGGTCATAT | + |
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Preference number: 6 (lower is better) Translates to: NMPCSGSLNRFP*INLQPNSLRSY Trigger: ATATGACCGGAGGCTGTTTGGTTGGAGGTTGATTCATGGGAATCTATTCAGGCTCCCAGAGCATGGCATGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114725.3 |
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| CDS TCA 72 bp | GAAGGATGGACAGCAACATGCCATGCTCTGGGAGCCTaGATAGATTCCCATGAATCAACCTCCAACCAAACA | + |
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Preference number: 6 (lower is better) Translates to: EGWTATCHALGA*IDSHESTSNQT Trigger: TGTTTGGTTGGAGGTTGATTCATGGGAATCTATTCAGGCTCCCAGAGCATGGCATGTTGCTGTCCATCCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114725.3 |
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| CDS CAA 72 bp | GAAAGAAAGTCCTTTGGGGACTCCCATGCTCATGTTTaGGTGCATAAACTGGAAACTCAAACTTTTCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: ERKSFGDSHAHV*VHKLETQTFPF Trigger: AAAGGGAAAAGTTTGAGTTTCCAGTTTATGCACCAAAACATGAGCATGGGAGTCCCCAAAGGACTTTCTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114725.3 |
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| CDS TCA 72 bp | AAAGACAGAAATGTCATTATGAAAACTTGTGTTCCTTaGCCAAGAAGGATGGACAGCAACATGCCATGCTCT | + |
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Preference number: 6 (lower is better) Translates to: KDRNVIMKTCVP*PRRMDSNMPCS Trigger: AGAGCATGGCATGTTGCTGTCCATCCTTCTTGGTCAAGGAACACAAGTTTTCATAATGACATTTCTGTCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114725.3 |
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| CDS CAA 72 bp | CTCCGGTCATATACAGAAATTTTTATACGGTTAAATTaGGCAATGTCTCTCCAGATACTCCTTAAGAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: LRSYTEIFIRLN*AMSLQILLKRR Trigger: CCTCCTCTTAAGGAGTATCTGGAGAGACATTGCCAAATTTAACCGTATAAAAATTTCTGTATATGACCGGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114725.3 |
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| CDS GCA 72 bp | ATAGCTTTTGGGATCGACTCTGGAACTAATCAGTTTTaGAACCTTGACAGTTGTATCACTTTCTATGTGATA | + |
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Preference number: 6 (lower is better) Translates to: IAFGIDSGTNQF*NLDSCITFYVI Trigger: TATCACATAGAAAGTGATACAACTGTCAAGGTTGCAAAACTGATTAGTTCCAGAGTCGATCCCAAAAGCTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114725.3 |
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| CDS CCA 72 bp | TTGAATTCGGGATTAATCAAGCAAGAACCTTTCACTTaGTCACTTGGGGCATTAAAACATCCTATTGGAAAT | + |
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Preference number: 6 (lower is better) Translates to: LNSGLIKQEPFT*SLGALKHPIGN Trigger: ATTTCCAATAGGATGTTTTAATGCCCCAAGTGACCAAGTGAAAGGTTCTTGCTTGATTAATCCCGAATTCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114725.3 |
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| CDS TCA 72 bp | AGTTTTGCAACCTTGACAGTTGTATCACTTTCTATGTaGTATGTAATAGTAATGTCAAGGTGGTTGAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: SFATLTVVSLSM*YVIVMSRWLKR Trigger: CCTCTTCAACCACCTTGACATTACTATTACATATCACATAGAAAGTGATACAACTGTCAAGGTTGCAAAACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114725.3 |
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| CDS CAA 72 bp | TCAAGGTGGTTGAAGAGGTACAAACTATTATTTTTGTaGAATTCGGGATTAATCAAGCAAGAACCTTTCACT | + |
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Preference number: 6 (lower is better) Translates to: SRWLKRYKLLFL*NSGLIKQEPFT Trigger: AGTGAAAGGTTCTTGCTTGATTAATCCCGAATTCAACAAAAATAATAGTTTGTACCTCTTCAACCACCTTGA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114725.3 |
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| CDS CAA 72 bp | ATGTCAAGGTGGTTGAAGAGGTACAAACTATTATTTTaGTTGAATTCGGGATTAATCAAGCAAGAACCTTTC | + |
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Preference number: 6 (lower is better) Translates to: MSRWLKRYKLLF*LNSGLIKQEPF Trigger: GAAAGGTTCTTGCTTGATTAATCCCGAATTCAACAAAAATAATAGTTTGTACCTCTTCAACCACCTTGACAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114725.3 |
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