Pregenerated sensors for TM6SF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038623Ensembl transcript IDs: ENSMUST00000041890.8, ENSMUST00000119543.2, ENSMUST00000126334.8
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CAGCCTGTCTCTGAATCCCAAGTGCAAGGATTAAAGGCGTGTGCTACCACTACCCACTCACATGTATGCTaGAGAACAAGTGTGTTCTTG | + |
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Preference number: 2 (lower is better) Translates to: QPVSESQVQGLKACATTTHSHVC*RTSVFL Trigger: CAAGAACACACTTGTTCTGCAGCATACATGTGAGTG...GGTAGTGGTAGCACACGCCTTTAATCCTTGCACTTGGGATTCAGAGACAGGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126334.8 |
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| 3UTR-3UTR CCA 90 bp | CCCTTAGTTTCACTCACATGTATGCTGCAGAACAAGTGTGTTCTTGTGAGTATTTCGGCAGAGCTCAGCTaGGCAATCCAAAGCAATCTT | + |
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Preference number: 2 (lower is better) Translates to: PLVSLTCMLQNKCVLVSISAELS*AIQSNL Trigger: AAGATTGCTTTGGATTGCCCAGCTGAGCTCTGCCGA...AATACTCACAAGAACACACTTGTTCTGCAGCATACATGTGAGTGAAACTAAGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126334.8 |
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| 3UTR-3UTR GCA 90 bp | CATATGAAGCCATTTCTCCAACCTGCAATTGCTGTTTTGAATTATTTCTTATGCCACTCACATGTATGCTaGAGAACAAGTGTGTTCTTG | + |
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Preference number: 2 (lower is better) Translates to: HMKPFLQPAIAVLNYFLCHSHVC*RTSVFL Trigger: CAAGAACACACTTGTTCTGCAGCATACATGTGAGTG...GCATAAGAAATAATTCAAAACAGCAATTGCAGGTTGGAGAAATGGCTTCATATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000126334.8 |
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| 3UTR-3UTR TCA 90 bp | CATATGAAGCCATTTCTCCAACCTGCAATTGCTGTTTTGAATTATTTCTTATGCCTCATACATTTCATATaGAGCCATTTCTCCAACCTG | + |
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Preference number: 2 (lower is better) Translates to: HMKPFLQPAIAVLNYFLCLIHFI*SHFSNL Trigger: CAGGTTGGAGAAATGGCTTCATATGAAATGTATGAG...GCATAAGAAATAATTCAAAACAGCAATTGCAGGTTGGAGAAATGGCTTCATATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000126334.8 |
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| CDS-3UTR CCA 90 bp | CAGCCTGTCTCTGAATCCCAAGTGCAAGGATTAAAGGCGTGTGCTACCACTACCGTCCAGGAATCGTGCTaGGCCGCCAGGTGGTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: QPVSESQVQGLKACATTTVQESC*AARWLK Trigger: CTTCAACCACCTGGCGGCCCAGCACGATTCCTGGAC...GGTAGTGGTAGCACACGCCTTTAATCCTTGCACTTGGGATTCAGAGACAGGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126334.8 |
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| CDS-3UTR CCA 90 bp | GCTAGACCTCCAGCATGGACCAGCGTTATATCAGGCATCCATGAGCATCCAGGGCAGCAACCCCAACAATaGTCCAGGAATCGTGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: ARPPAWTSVISGIHEHPGQQPQQ*SRNRAG Trigger: CCCAGCACGATTCCTGGACCATTGTTGGGGTTGCTG...CCCTGGATGCTCATGGATGCCTGATATAACGCTGGTCCATGCTGGAGGTCTAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126334.8 |
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| CDS-3UTR TCA 90 bp | TATCAGGCATCCATGAGCATCCAGGGACCACTAAGCCATAAAGGGCAATCACAAGGTGACCGGGATGGCTaGGAGGGACAGCACAAAAAC | + |
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Preference number: 4 (lower is better) Translates to: YQASMSIQGPLSHKGQSQGDRDG*EGQHKN Trigger: GTTTTTGTGCTGTCCCTCTCAGCCATCCCGGTCACC...TTGTGATTGCCCTTTATGGCTTAGTGGTCCCTGGATGCTCATGGATGCCTGATA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000126334.8 |
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| CDS-3UTR TCA 90 bp | CAGATACTACCCTTAGTTTCACTCACATGTATGCTGCAGAACAAGTGTGTTCTTCCACCAGGAGCAGGATaGGGGCAGCAACCCCAACAA | + |
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Preference number: 4 (lower is better) Translates to: QILPLVSLTCMLQNKCVLPPGAG*GQQPQQ Trigger: TTGTTGGGGTTGCTGCCCTCATCCTGCTCCTGGTGG...AAGAACACACTTGTTCTGCAGCATACATGTGAGTGAAACTAAGGGTAGTATCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000126334.8 |
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| CDS-3UTR TCA 90 bp | CTTAGTTTCACTCACATGTATGCTGCAGAACAAGTGTGTTCTTGTGAGTATTCCGGTGACCGGGATGGCTaGGAGGGACAGCACAAAAAC | + |
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Preference number: 4 (lower is better) Translates to: LSFTHMYAAEQVCSCEYSGDRDG*EGQHKN Trigger: GTTTTTGTGCTGTCCCTCTCAGCCATCCCGGTCACC...GGAATACTCACAAGAACACACTTGTTCTGCAGCATACATGTGAGTGAAACTAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000126334.8 |
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| CDS-3UTR GCA 90 bp | CTCTTGAAACTGCGTGTAGAGTCGGCAGAGCTCAGCTGGGCAATCCAAAGCAATGGTAAATCCAAACACTaGATACACGTAGAACAGAGG | + |
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Preference number: 4 (lower is better) Translates to: LLKLRVESAELSWAIQSNGKSKH*IHVEQR Trigger: CCTCTGTTCTACGTGTATGCAGTGTTTGGATTTACC...ATTGCTTTGGATTGCCCAGCTGAGCTCTGCCGACTCTACACGCAGTTTCAAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126334.8 |
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| CDS-3UTR GCA 90 bp | CTCTTGAAACTGCGTGTAGAGTCGGCAGAGCTCAGCTGGGCAATCCAAAGCAATTCAATGATGCCATCTTaGTCCAAGCCTATGATAAGG | + |
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Preference number: 4 (lower is better) Translates to: LLKLRVESAELSWAIQSNSMMPS*SKPMIR Trigger: CCTTATCATAGGCTTGGAGCAAGATGGCATCATTGA...ATTGCTTTGGATTGCCCAGCTGAGCTCTGCCGACTCTACACGCAGTTTCAAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126334.8 |
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| CDS-3UTR TCA 90 bp | CATATGAAGCCATTTCTCCAACCTGCAATTGCTGTTTTGAATTATTTCTTATGCCCACCAGGAGCAGGATaGGGGCAGCAACCCCAACAA | + |
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Preference number: 4 (lower is better) Translates to: HMKPFLQPAIAVLNYFLCPPGAG*GQQPQQ Trigger: TTGTTGGGGTTGCTGCCCTCATCCTGCTCCTGGTGG...GCATAAGAAATAATTCAAAACAGCAATTGCAGGTTGGAGAAATGGCTTCATATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000126334.8 |
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| CDS-3UTR CCA 90 bp | CATATGAAGCCATTTCTCCAACCTGCAATTGCTGTTTTGAATTATTTCTTATGCGTCCAGGAATCGTGCTaGGCCGCCAGGTGGTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: HMKPFLQPAIAVLNYFLCVQESC*AARWLK Trigger: CTTCAACCACCTGGCGGCCCAGCACGATTCCTGGAC...GCATAAGAAATAATTCAAAACAGCAATTGCAGGTTGGAGAAATGGCTTCATATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000126334.8 |
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| CDS-3UTR CCA 90 bp | GTCAACAACTCATACATTTCATATGAAGCCATTTCTCCAACCTGCAATTGCTGTTTTCCTCCCAGGCTATaGCGGCCACCATCACTAGGT | + |
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Preference number: 4 (lower is better) Translates to: VNNSYISYEAISPTCNCCFPPRL*RPPSLG Trigger: ACCTAGTGATGGTGGCCGCCATAGCCTGGGAGGAAA...ACAGCAATTGCAGGTTGGAGAAATGGCTTCATATGAAATGTATGAGTTGTTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041890.8 |
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| CDS-3UTR CCA 90 bp | TTGTCAACAACTCATACATTTCATATGAAGCCATTTCTCCAACCTGCAATTGCTCTTTCTCCCAGGCTATaGCGGCCACCATCACTAGGT | + |
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Preference number: 4 (lower is better) Translates to: LSTTHTFHMKPFLQPAIALSPRL*RPPSLG Trigger: ACCTAGTGATGGTGGCCGCCATAGCCTGGGAGAAAG...AGCAATTGCAGGTTGGAGAAATGGCTTCATATGAAATGTATGAGTTGTTGACAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126334.8 |
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| CDS-3UTR TCA 90 bp | CCCTTAGTTTCACTCACATGTATGCTGCAGAACAAGTGTGTTCTTGTGAGTATTGTTGATTATAGATTCTaGAGCCAGCCCAGACCGGAA | + |
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Preference number: 4 (lower is better) Translates to: PLVSLTCMLQNKCVLVSIVDYRF*SQPRPE Trigger: TTCCGGTCTGGGCTGGCTTCAGAATCTATAATCAAC...AATACTCACAAGAACACACTTGTTCTGCAGCATACATGTGAGTGAAACTAAGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041890.8 |
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| CDS-3UTR CCA 90 bp | ACTCATACATTTCATATGAAGCCATTTCTCCAACCTGCAATTGCTGTTTTGAATCAGCAACCCCAACAATaGTCCAGGAATCGTGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: THTFHMKPFLQPAIAVLNQQPQQ*SRNRAG Trigger: CCCAGCACGATTCCTGGACCATTGTTGGGGTTGCTG...ATTCAAAACAGCAATTGCAGGTTGGAGAAATGGCTTCATATGAAATGTATGAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000126334.8 |
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| CDS-3UTR CCA 90 bp | GTCAACAACTCATACATTTCATATGAAGCCATTTCTCCAACCTGCAATTGCTGTCCCAGTATAGGCCAATaGTTCTGTAGCTTTCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: VNNSYISYEAISPTCNCCPSIGQ*FCSFPP Trigger: GGGAGGAAAGCTACAGAACCATTGGCCTATACTGGG...ACAGCAATTGCAGGTTGGAGAAATGGCTTCATATGAAATGTATGAGTTGTTGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041890.8 |
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| CDS-3UTR TCA 90 bp | AACTCATACATTTCATATGAAGCCATTTCTCCAACCTGCAATTGCTGTTTTGAATCGGTGGTTTTCTTCTaGCAAGGACCCGGGCCAAAA | + |
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Preference number: 4 (lower is better) Translates to: NSYISYEAISPTCNCCFESVVFF*QGPGPK Trigger: TTTTGGCCCGGGTCCTTGTCAGAAGAAAACCACCGA...TTCAAAACAGCAATTGCAGGTTGGAGAAATGGCTTCATATGAAATGTATGAGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000126334.8 |
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| CDS-3UTR TCA 90 bp | CAGATACTACCCTTAGTTTCACTCACATGTATGCTGCAGAACAAGTGTGTTCTTAAGCAATCAAGCCTCTaGACAGGCAAAATCCAGTTG | + |
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Preference number: 4 (lower is better) Translates to: QILPLVSLTCMLQNKCVLKQSSL*TGKIQL Trigger: CAACTGGATTTTGCCTGTTCAGAGGCTTGATTGCTT...AAGAACACACTTGTTCTGCAGCATACATGTGAGTGAAACTAAGGGTAGTATCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041890.8 |
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| CDS-3UTR GCA 90 bp | AACTCATACATTTCATATGAAGCCATTTCTCCAACCTGCAATTGCTGTTTTGAATCTCAGCAGGGCCTTTaGTTGGGCTTCTTGAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: NSYISYEAISPTCNCCFESQQGL*LGFLKN Trigger: GTTCTTCAAGAAGCCCAAGCAAAGGCCCTGCTGAGA...TTCAAAACAGCAATTGCAGGTTGGAGAAATGGCTTCATATGAAATGTATGAGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041890.8 |
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| CDS-3UTR GCA 90 bp | CATATGAAGCCATTTCTCCAACCTGCAATTGCTGTTTTGAATTATTTCTTATGCGGTAAATCCAAACACTaGATACACGTAGAACAGAGG | + |
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Preference number: 4 (lower is better) Translates to: HMKPFLQPAIAVLNYFLCGKSKH*IHVEQR Trigger: CCTCTGTTCTACGTGTATGCAGTGTTTGGATTTACC...GCATAAGAAATAATTCAAAACAGCAATTGCAGGTTGGAGAAATGGCTTCATATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000126334.8 |
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| CDS-3UTR GCA 90 bp | ACTCATACATTTCATATGAAGCCATTTCTCCAACCTGCAATTGCTGTTTTGAATTCAATGATGCCATCTTaGTCCAAGCCTATGATAAGG | + |
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Preference number: 4 (lower is better) Translates to: THTFHMKPFLQPAIAVLNSMMPS*SKPMIR Trigger: CCTTATCATAGGCTTGGAGCAAGATGGCATCATTGA...ATTCAAAACAGCAATTGCAGGTTGGAGAAATGGCTTCATATGAAATGTATGAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000126334.8 |
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| CDS-3UTR GCA 90 bp | CATATGAAGCCATTTCTCCAACCTGCAATTGCTGTTTTGAATTATTTCTTATGCGGAATAGAACATGTATaGCAGCATCTGAATCTTAGG | + |
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Preference number: 4 (lower is better) Translates to: HMKPFLQPAIAVLNYFLCGIEHV*QHLNLR Trigger: CCTAAGATTCAGATGCTGGCATACATGTTCTATTCC...GCATAAGAAATAATTCAAAACAGCAATTGCAGGTTGGAGAAATGGCTTCATATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041890.8 |
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| CDS CCA 90 bp | GGTAAATCCAAACACTGCATACACGTAGAACAGAGGGTCCCTCGGTaGTTTTCTTCTGACAAGGACCCGGGCCAAAAGGGCCACCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: GKSKHCIHVEQRVPR*FSSDKDPGQKGHQE Trigger: CTCCTGGTGGCCCTTTTGGCCCGGGTCCTTGTCAGAAGAAAACCACCGAGGGACCCTCTGTTCTACGTGTATGCAGTGTTTGGATTTACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000126334.8 |
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| CDS-3UTR CAA 90 bp | CCCTTAGTTTCACTCACATGTATGCTGCAGAACAAGTGTGTTCTTGTGAGTATTCAGCAGGGCCTTTGCTaGGGCTTCTTGAAGAACCTT | + |
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Preference number: 5 (lower is better) Translates to: PLVSLTCMLQNKCVLVSIQQGLC*GFLKNL Trigger: AAGGTTCTTCAAGAAGCCCAAGCAAAGGCCCTGCTG...AATACTCACAAGAACACACTTGTTCTGCAGCATACATGTGAGTGAAACTAAGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041890.8 |
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| CDS TCA 90 bp | CCTTTGAGGGATAATTATAGTTTTCTGATGGTTGATTATAGATTCTaGAGCCAGCCCAGACCGGAAGACATGTATATGGTATGCTTAAGA | + |
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Preference number: 5 (lower is better) Translates to: PLRDNYSFLMVDYRF*SQPRPEDMYMVCLR Trigger: TCTTAAGCATACCATATACATGTCTTCCGGTCTGGGCTGGCTTCAGAATCTATAATCAACCATCAGAAAACTATAATTATCCCTCAAAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000119543.2 |
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| CDS TCA 72 bp | ACACGTAGAACAGAGGGTCCCTCGGTGGTTTTCTTCTaGCAAGGACCCGGGCCAAAAGGGCCACCAGGAGCA | + |
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Preference number: 6 (lower is better) Translates to: TRRTEGPSVVFF*QGPGPKGPPGA Trigger: TGCTCCTGGTGGCCCTTTTGGCCCGGGTCCTTGTCAGAAGAAAACCACCGAGGGACCCTCTGTTCTACGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000126334.8 |
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| CDS CCA 72 bp | CTCTTGAAACTGCGTGTAGAGTCGGCAGAGCTCAGCTaGGCAATCCAAAGCAATCAAGCCTCTGAACAGGCA | + |
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Preference number: 6 (lower is better) Translates to: LLKLRVESAELS*AIQSNQASEQA Trigger: TGCCTGTTCAGAGGCTTGATTGCTTTGGATTGCCCAGCTGAGCTCTGCCGACTCTACACGCAGTTTCAAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000119543.2 |
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| CDS CCA 72 bp | ATAGGCCAATGGTTCTGTAGCTTTCCTCCCAGGCTATaGCGGCCACCATCACTAGGTACATCAGGTAATGAA | + |
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Preference number: 6 (lower is better) Translates to: IGQWFCSFPPRL*RPPSLGTSGNE Trigger: TTCATTACCTGATGTACCTAGTGATGGTGGCCGCCATAGCCTGGGAGGAAAGCTACAGAACCATTGGCCTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000119543.2 |
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| CDS CAA 90 bp | ACCCTCTCTCAAGTAGTGCGTCATGAATCCATCAATGATGCCATCTaGCTCCAAGCCTATGATAAGGTTCACCACACTGGTAAATCCAAA | + |
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Preference number: 6 (lower is better) Translates to: TLSQVVRHESINDAI*LQAYDKVHHTGKSK Trigger: TTTGGATTTACCAGTGTGGTGAACCTTATCATAGGCTTGGAGCAAGATGGCATCATTGATGGATTCATGACGCACTACTTGAGAGAGGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000126334.8 |
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| CDS CAA 90 bp | GACACAAAACCAACACTAAGTCAAACGGTCTTCTCAGCAGGGCCTTaGCTTGGGCTTCTTGAAGAACCTTTGAGGGATAATTATAGTTTT | + |
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Preference number: 6 (lower is better) Translates to: DTKPTLSQTVFSAGP*LGLLEEPLRDNYSF Trigger: AAAACTATAATTATCCCTCAAAGGTTCTTCAAGAAGCCCAAGCAAAGGCCCTGCTGAGAAGACCGTTTGACTTAGTGTTGGTTTTGTGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041890.8 ENSMUST00000119543.2 |
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