Pregenerated sensors for TM4SF5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018919Ensembl transcript IDs: ENSMUST00000019063.3
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCTCTGAAGGCCCACGTACACTCTTTCCAAAGGCTAAACCAGAACTaGGGGAAGGGGCTCAGGGTGGTTTATTCCACTAAGGAAGAGCCT | + |
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Preference number: 1 (lower is better) Translates to: SLKAHVHSFQRLNQN*GKGLRVVYSTKEEP Trigger: AGGCTCTTCCTTAGTGGAATAAACCACCCTGAGCCCCTTCCCCCAGTTCTGGTTTAGCCTTTGGAAAGAGTGTACGTGGGCCTTCAGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| 3UTR-3UTR TCA 90 bp | GAGAATAACAAGAGGGGGTGGGGGTTGTGGGTAGAGTGGGAGGTACATATAGAACAACCAGGGAGTGGGTaGCCACTCAGACTTCCAGAA | + |
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Preference number: 2 (lower is better) Translates to: ENNKRGWGLWVEWEVHIEQPGSG*PLRLPE Trigger: TTCTGGAAGTCTGAGTGGTCACCCACTCCCTGGTTG...TTCTATATGTACCTCCCACTCTACCCACAACCCCCACCCCCTCTTGTTATTCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| 3UTR-3UTR TCA 90 bp | AATAACTATGTTGTTGTTGTTAAGAGAATAACAAGAGGGGGTGGGGGTTGTGGGCTAGACACATATCTCTaGAGGCCCACGTACACTCTT | + |
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Preference number: 2 (lower is better) Translates to: NNYVVVVKRITRGGGGCGLDTYL*RPTYTL Trigger: AAGAGTGTACGTGGGCCTTCAGAGATATGTGTCTAG...CCCACAACCCCCACCCCCTCTTGTTATTCTCTTAACAACAACAACATAGTTATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| 3UTR CCA 72 bp | GCCCACGTACACTCTTTCCAAAGGCTAAACCAGAACTaGGGGAAGGGGCTCAGGGTGGTTTATTCCACTAAG | + |
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Preference number: 3 (lower is better) Translates to: AHVHSFQRLNQN*GKGLRVVYSTK Trigger: CTTAGTGGAATAAACCACCCTGAGCCCCTTCCCCCAGTTCTGGTTTAGCCTTTGGAAAGAGTGTACGTGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS-3UTR CCA 90 bp | CAGAACTGGGGGAAGGGGCTCAGGGTGGTTTATTCCACTAAGGAAGAGCCTGAACCAGCAGGAGGGCGTTaGCCACGATGCAGACCAGGG | + |
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Preference number: 4 (lower is better) Translates to: QNWGKGLRVVYSTKEEPEPAGGR*PRCRPG Trigger: CCCTGGTCTGCATCGTGGCCAACGCCCTCCTGCTGG...TTCAGGCTCTTCCTTAGTGGAATAAACCACCCTGAGCCCCTTCCCCCAGTTCTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS-3UTR TCA 90 bp | CAGAACTGGGGGAAGGGGCTCAGGGTGGTTTATTCCACTAAGGAAGAGCCTGAAGCCAAACTTGCAAGCTaGGGTTGCCGTCCGTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: QNWGKGLRVVYSTKEEPEAKLAS*GCRPSR Trigger: CCTGGACGGACGGCAACCTCAGCTTGCAAGTTTGGC...TTCAGGCTCTTCCTTAGTGGAATAAACCACCCTGAGCCCCTTCCCCCAGTTCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS-3UTR GCA 90 bp | GAGAATAACAAGAGGGGGTGGGGGTTGTGGGTAGAGTGGGAGGTACATATAGAAGCATCCTGCAGCGGTTaGCACAGCAACCTGCACCGC | + |
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Preference number: 4 (lower is better) Translates to: ENNKRGWGLWVEWEVHIEASCSG*HSNLHR Trigger: GCGGTGCAGGTTGCTGTGGCAACCGCTGCAGGATGC...TTCTATATGTACCTCCCACTCTACCCACAACCCCCACCCCCTCTTGTTATTCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS-3UTR CCA 90 bp | CAGAACTGGGGGAAGGGGCTCAGGGTGGTTTATTCCACTAAGGAAGAGCCTGAACTGACAGGCAGTAGATaGCGCCAAGCACCCCAAAGG | + |
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Preference number: 4 (lower is better) Translates to: QNWGKGLRVVYSTKEEPELTGSR*RQAPQR Trigger: CCTTTGGGGTGCTTGGCGCCATCTACTGCCTGTCAG...TTCAGGCTCTTCCTTAGTGGAATAAACCACCCTGAGCCCCTTCCCCCAGTTCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS-3UTR TCA 90 bp | GAGAATAACAAGAGGGGGTGGGGGTTGTGGGTAGAGTGGGAGGTACATATAGAATGCGACCACCAGGATTaGGAAGAGTGTCACATTCCA | + |
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Preference number: 4 (lower is better) Translates to: ENNKRGWGLWVEWEVHIECDHQD*EECHIP Trigger: TGGAATGTGACACTCTTCTCAATCCTGGTGGTCGCA...TTCTATATGTACCTCCCACTCTACCCACAACCCCCACCCCCTCTTGTTATTCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS-3UTR GCA 90 bp | CAGAACAATAACTATGTTGTTGTTGTTAAGAGAATAACAAGAGGGGGTGGGGGTGTTGCCACAGCAACCTaGACCGCAGCAGCCCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: QNNNYVVVVKRITRGGGGVATAT*TAAALS Trigger: GGAAAGGGCTGCTGCGGTGCAGGTTGCTGTGGCAAC...ACCCCCACCCCCTCTTGTTATTCTCTTAACAACAACAACATAGTTATTGTTCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS-3UTR CCA 90 bp | AATAACTATGTTGTTGTTGTTAAGAGAATAACAAGAGGGGGTGGGGGTTGTGGGTGCCGTCCGTCCAGGTaGTCTTCCCATCAGGTACCA | + |
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Preference number: 4 (lower is better) Translates to: NNYVVVVKRITRGGGGCGCRPSR*SSHQVP Trigger: TGGTACCTGATGGGAAGACCACCTGGACGGACGGCA...CCCACAACCCCCACCCCCTCTTGTTATTCTCTTAACAACAACAACATAGTTATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS-3UTR CCA 90 bp | CAGAACAATAACTATGTTGTTGTTGTTAAGAGAATAACAAGAGGGGGTGGGGGTTGTCTATTAAGCATTTaGGTCCAATTCGGAGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: QNNNYVVVVKRITRGGGGCLLSI*VQFGAQ Trigger: CTGGGCTCCGAATTGGACCCAAATGCTTAATAGACA...ACCCCCACCCCCTCTTGTTATTCTCTTAACAACAACAACATAGTTATTGTTCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS GCA 90 bp | GCAGCGGTTGCCACAGCAACCTGCACCGCAGCAGCCCTTTCCCCCTaGCCGGACCGCTGCAATTCCTGGACACAGCACCATCAGGCCCCC | + |
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Preference number: 5 (lower is better) Translates to: AAVATATCTAAALSP*PDRCNSWTQHHQAP Trigger: GGGGGCCTGATGGTGCTGTGTCCAGGAATTGCAGCGGTCCGGGCAGGGGGAAAGGGCTGCTGCGGTGCAGGTTGCTGTGGCAACCGCTGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS GCA 90 bp | GGAGAAGACGGAGCGCAGCATCCTGCAGCGGTTGCCACAGCAACCTaGACCGCAGCAGCCCTTTCCCCCTGCCCGGACCGCTGCAATTCC | + |
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Preference number: 5 (lower is better) Translates to: GEDGAQHPAAVATAT*TAAALSPCPDRCNS Trigger: GGAATTGCAGCGGTCCGGGCAGGGGGAAAGGGCTGCTGCGGTGCAGGTTGCTGTGGCAACCGCTGCAGGATGCTGCGCTCCGTCTTCTCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS CCA 90 bp | TGGGTCCAATTCGGAGCCCAGCTCCCGCCACTGACAGGCAGTAGATaGCGCCAAGCACCCCAAAGGCGGAGGAGAAGACGGAGCGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: WVQFGAQLPPLTGSR*RQAPQRRRRRRSAA Trigger: TGCTGCGCTCCGTCTTCTCCTCCGCCTTTGGGGTGCTTGGCGCCATCTACTGCCTGTCAGTGGCGGGAGCTGGGCTCCGAATTGGACCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS GCA 90 bp | AGCACCATCAGGCCCCCTCCAATGAAGCCACCCATGAGCCAAACTTaGAAGCTGAGGTTGCCGTCCGTCCAGGTGGTCTTCCCATCAGGT | + |
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Preference number: 5 (lower is better) Translates to: STIRPPPMKPPMSQT*KLRLPSVQVVFPSG Trigger: ACCTGATGGGAAGACCACCTGGACGGACGGCAACCTCAGCTTGCAAGTTTGGCTCATGGGTGGCTTCATTGGAGGGGGCCTGATGGTGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS-3UTR CAA 90 bp | AACCAGAACTGGGGGAAGGGGCTCAGGGTGGTTTATTCCACTAAGGAAGAGCCTACCAGCAGGAGGGCGTaGGCCACGATGCAGACCAGG | + |
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Preference number: 5 (lower is better) Translates to: NQNWGKGLRVVYSTKEEPTSRRA*ATMQTR Trigger: CCTGGTCTGCATCGTGGCCAACGCCCTCCTGCTGGT...AGGCTCTTCCTTAGTGGAATAAACCACCCTGAGCCCCTTCCCCCAGTTCTGGTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS-3UTR CAA 90 bp | CTAAACCAGAACTGGGGGAAGGGGCTCAGGGTGGTTTATTCCACTAAGGAAGAGAGCATCCTGCAGCGGTaGCCACAGCAACCTGCACCG | + |
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Preference number: 5 (lower is better) Translates to: LNQNWGKGLRVVYSTKEESILQR*PQQPAP Trigger: CGGTGCAGGTTGCTGTGGCAACCGCTGCAGGATGCT...CTCTTCCTTAGTGGAATAAACCACCCTGAGCCCCTTCCCCCAGTTCTGGTTTAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS-3UTR CAA 90 bp | CTAAACCAGAACTGGGGGAAGGGGCTCAGGGTGGTTTATTCCACTAAGGAAGAGACTTGCAAGCTGAGGTaGCCGTCCGTCCAGGTGGTC | + |
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Preference number: 5 (lower is better) Translates to: LNQNWGKGLRVVYSTKEETCKLR*PSVQVV Trigger: GACCACCTGGACGGACGGCAACCTCAGCTTGCAAGT...CTCTTCCTTAGTGGAATAAACCACCCTGAGCCCCTTCCCCCAGTTCTGGTTTAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS-3UTR CAA 90 bp | CTAAACCAGAACTGGGGGAAGGGGCTCAGGGTGGTTTATTCCACTAAGGAAGAGACCCATGAGCCAAACTaGCAAGCTGAGGTTGCCGTC | + |
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Preference number: 5 (lower is better) Translates to: LNQNWGKGLRVVYSTKEETHEPN*QAEVAV Trigger: GACGGCAACCTCAGCTTGCAAGTTTGGCTCATGGGT...CTCTTCCTTAGTGGAATAAACCACCCTGAGCCCCTTCCCCCAGTTCTGGTTTAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS TCA 90 bp | GCGACCACCAGGATTGAGAAGAGTGTCACATTCCAGGGTACCACGTaGGGTGGCGCCTCACACAAATTCCAAAGAGTGTCATTTCGCAAG | + |
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Preference number: 5 (lower is better) Translates to: ATTRIEKSVTFQGTT*GGASHKFQRVSFRK Trigger: CTTGCGAAATGACACTCTTTGGAATTTGTGTGAGGCGCCACCTCACGTGGTACCCTGGAATGTGACACTCTTCTCAATCCTGGTGGTCGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS TCA 90 bp | TTCCTGCAATCGCCACACAACACACCAAAGGTCGCATTCACCAGCTaGATTCCACACAGCACAAGTTCCAGACTTGATGCGACCACCAGG | + |
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Preference number: 5 (lower is better) Translates to: FLQSPHNTPKVAFTS*IPHSTSSRLDATTR Trigger: CCTGGTGGTCGCATCAAGTCTGGAACTTGTGCTGTGTGGAATTCAGCTGGTGAATGCGACCTTTGGTGTGTTGTGTGGCGATTGCAGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS-3UTR CAA 90 bp | AACCAGAACTGGGGGAAGGGGCTCAGGGTGGTTTATTCCACTAAGGAAGAGCCTATGCGACCACCAGGATaGAGAAGAGTGTCACATTCC | + |
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Preference number: 5 (lower is better) Translates to: NQNWGKGLRVVYSTKEEPMRPPG*RRVSHS Trigger: GGAATGTGACACTCTTCTCAATCCTGGTGGTCGCAT...AGGCTCTTCCTTAGTGGAATAAACCACCCTGAGCCCCTTCCCCCAGTTCTGGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS CCA 90 bp | CTGTTTCTTGGAAGTGGTAGTCCCACTTGTTGTCTATTAAGCATTTaGGTCCAATTCGGAGCCCAGCTCCCGCCACTGACAGGCAGTAGA | + |
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Preference number: 5 (lower is better) Translates to: LFLGSGSPTCCLLSI*VQFGAQLPPLTGSR Trigger: TCTACTGCCTGTCAGTGGCGGGAGCTGGGCTCCGAATTGGACCCAAATGCTTAATAGACAACAAGTGGGACTACCACTTCCAAGAAACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS-3UTR CAA 90 bp | ACCAGGGAGTGGGTGACCACTCAGACTTCCAGAAATGAGGTATTAGGGGTGGCCTTGTCTATTAAGCATTaGGGTCCAATTCGGAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: TREWVTTQTSRNEVLGVALSIKH*GPIRSP Trigger: TGGGCTCCGAATTGGACCCAAATGCTTAATAGACAA...GGCCACCCCTAATACCTCATTTCTGGAAGTCTGAGTGGTCACCCACTCCCTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS GCA 72 bp | GGAGCGCAGCATCCTGCAGCGGTTGCCACAGCAACCTaGACCGCAGCAGCCCTTTCCCCCTGCCCGGACCGC | + |
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Preference number: 6 (lower is better) Translates to: GAQHPAAVATAT*TAAALSPCPDR Trigger: GCGGTCCGGGCAGGGGGAAAGGGCTGCTGCGGTGCAGGTTGCTGTGGCAACCGCTGCAGGATGCTGCGCTCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS GCA 72 bp | CGGAGGAGAAGACGGAGCGCAGCATCCTGCAGCGGTTaGCACAGCAACCTGCACCGCAGCAGCCCTTTCCCC | + |
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Preference number: 6 (lower is better) Translates to: RRRRRSAASCSG*HSNLHRSSPFP Trigger: GGGGAAAGGGCTGCTGCGGTGCAGGTTGCTGTGGCAACCGCTGCAGGATGCTGCGCTCCGTCTTCTCCTCCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS GCA 72 bp | CCCCAAAGGCGGAGGAGAAGACGGAGCGCAGCATCCTaGAGCGGTTGCCACAGCAACCTGCACCGCAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: PQRRRRRRSAAS*SGCHSNLHRSS Trigger: GCTGCTGCGGTGCAGGTTGCTGTGGCAACCGCTGCAGGATGCTGCGCTCCGTCTTCTCCTCCGCCTTTGGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS GCA 72 bp | GCCACAGCAACCTGCACCGCAGCAGCCCTTTCCCCCTaGCCGGACCGCTGCAATTCCTGGACACAGCACCAT | + |
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Preference number: 6 (lower is better) Translates to: ATATCTAAALSP*PDRCNSWTQHH Trigger: ATGGTGCTGTGTCCAGGAATTGCAGCGGTCCGGGCAGGGGGAAAGGGCTGCTGCGGTGCAGGTTGCTGTGGC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS CCA 72 bp | TTCGGAGCCCAGCTCCCGCCACTGACAGGCAGTAGATaGCGCCAAGCACCCCAAAGGCGGAGGAGAAGACGG | + |
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Preference number: 6 (lower is better) Translates to: FGAQLPPLTGSR*RQAPQRRRRRR Trigger: CCGTCTTCTCCTCCGCCTTTGGGGTGCTTGGCGCCATCTACTGCCTGTCAGTGGCGGGAGCTGGGCTCCGAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS TCA 72 bp | GCATTTGGGTCCAATTCGGAGCCCAGCTCCCGCCACTaGCAGGCAGTAGATGGCGCCAAGCACCCCAAAGGC | + |
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Preference number: 6 (lower is better) Translates to: AFGSNSEPSSRH*QAVDGAKHPKG Trigger: GCCTTTGGGGTGCTTGGCGCCATCTACTGCCTGTCAGTGGCGGGAGCTGGGCTCCGAATTGGACCCAAATGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS CAA 72 bp | CAGGTGGTCTTCCCATCAGGTACCAGCAGGAGGGCGTaGGCCACGATGCAGACCAGGGAGAGAGGGATGAGG | + |
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Preference number: 6 (lower is better) Translates to: QVVFPSGTSRRA*ATMQTRERGMR Trigger: CCTCATCCCTCTCTCCCTGGTCTGCATCGTGGCCAACGCCCTCCTGCTGGTACCTGATGGGAAGACCACCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS CAA 90 bp | CCCCCTCCAATGAAGCCACCCATGAGCCAAACTTGCAAGCTGAGGTaGCCGTCCGTCCAGGTGGTCTTCCCATCAGGTACCAGCAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: PPPMKPPMSQTCKLR*PSVQVVFPSGTSRR Trigger: CCTCCTGCTGGTACCTGATGGGAAGACCACCTGGACGGACGGCAACCTCAGCTTGCAAGTTTGGCTCATGGGTGGCTTCATTGGAGGGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS CAA 90 bp | CAGCACCATCAGGCCCCCTCCAATGAAGCCACCCATGAGCCAAACTaGCAAGCTGAGGTTGCCGTCCGTCCAGGTGGTCTTCCCATCAGG | + |
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Preference number: 6 (lower is better) Translates to: QHHQAPSNEATHEPN*QAEVAVRPGGLPIR Trigger: CCTGATGGGAAGACCACCTGGACGGACGGCAACCTCAGCTTGCAAGTTTGGCTCATGGGTGGCTTCATTGGAGGGGGCCTGATGGTGCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS GCA 72 bp | AGGCCCCCTCCAATGAAGCCACCCATGAGCCAAACTTaGAAGCTGAGGTTGCCGTCCGTCCAGGTGGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: RPPPMKPPMSQT*KLRLPSVQVVF Trigger: GAAGACCACCTGGACGGACGGCAACCTCAGCTTGCAAGTTTGGCTCATGGGTGGCTTCATTGGAGGGGGCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS CAA 72 bp | CAGGCCCCCTCCAATGAAGCCACCCATGAGCCAAACTaGCAAGCTGAGGTTGCCGTCCGTCCAGGTGGTCTT | + |
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Preference number: 6 (lower is better) Translates to: QAPSNEATHEPN*QAEVAVRPGGL Trigger: AAGACCACCTGGACGGACGGCAACCTCAGCTTGCAAGTTTGGCTCATGGGTGGCTTCATTGGAGGGGGCCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS CAA 72 bp | ATGAAGCCACCCATGAGCCAAACTTGCAAGCTGAGGTaGCCGTCCGTCCAGGTGGTCTTCCCATCAGGTACC | + |
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Preference number: 6 (lower is better) Translates to: MKPPMSQTCKLR*PSVQVVFPSGT Trigger: GGTACCTGATGGGAAGACCACCTGGACGGACGGCAACCTCAGCTTGCAAGTTTGGCTCATGGGTGGCTTCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS CAA 90 bp | GAATTCCACACAGCACAAGTTCCAGACTTGATGCGACCACCAGGATaGAGAAGAGTGTCACATTCCAGGGTACCACGTGAGGTGGCGCCT | + |
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Preference number: 6 (lower is better) Translates to: EFHTAQVPDLMRPPG*RRVSHSRVPREVAP Trigger: AGGCGCCACCTCACGTGGTACCCTGGAATGTGACACTCTTCTCAATCCTGGTGGTCGCATCAAGTCTGGAACTTGTGCTGTGTGGAATTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS CCA 72 bp | GGAAGTGGTAGTCCCACTTGTTGTCTATTAAGCATTTaGGTCCAATTCGGAGCCCAGCTCCCGCCACTGACA | + |
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Preference number: 6 (lower is better) Translates to: GSGSPTCCLLSI*VQFGAQLPPLT Trigger: TGTCAGTGGCGGGAGCTGGGCTCCGAATTGGACCCAAATGCTTAATAGACAACAAGTGGGACTACCACTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS CAA 72 bp | ACAGCACAAGTTCCAGACTTGATGCGACCACCAGGATaGAGAAGAGTGTCACATTCCAGGGTACCACGTGAG | + |
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Preference number: 6 (lower is better) Translates to: TAQVPDLMRPPG*RRVSHSRVPRE Trigger: CTCACGTGGTACCCTGGAATGTGACACTCTTCTCAATCCTGGTGGTCGCATCAAGTCTGGAACTTGTGCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS CAA 90 bp | AGGTCGCATTCACCAGCTGAATTCCACACAGCACAAGTTCCAGACTaGATGCGACCACCAGGATTGAGAAGAGTGTCACATTCCAGGGTA | + |
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Preference number: 6 (lower is better) Translates to: RSHSPAEFHTAQVPD*MRPPGLRRVSHSRV Trigger: TACCCTGGAATGTGACACTCTTCTCAATCCTGGTGGTCGCATCAAGTCTGGAACTTGTGCTGTGTGGAATTCAGCTGGTGAATGCGACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS TCA 72 bp | AGGATTGAGAAGAGTGTCACATTCCAGGGTACCACGTaGGGTGGCGCCTCACACAAATTCCAAAGAGTGTCA | + |
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Preference number: 6 (lower is better) Translates to: RIEKSVTFQGTT*GGASHKFQRVS Trigger: TGACACTCTTTGGAATTTGTGTGAGGCGCCACCTCACGTGGTACCCTGGAATGTGACACTCTTCTCAATCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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| CDS CAA 72 bp | TCACCAGCTGAATTCCACACAGCACAAGTTCCAGACTaGATGCGACCACCAGGATTGAGAAGAGTGTCACAT | + |
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Preference number: 6 (lower is better) Translates to: SPAEFHTAQVPD*MRPPGLRRVSH Trigger: ATGTGACACTCTTCTCAATCCTGGTGGTCGCATCAAGTCTGGAACTTGTGCTGTGTGGAATTCAGCTGGTGA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019063.3 |
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