RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TM4SF4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027801

Ensembl transcript IDs: ENSMUST00000029377.8

Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp AAACCCACTGAATTTCTAGATTGTGCAAAGCTGTTTGGAAAGAGAAAAGGATCTACATGTGGTCAGGGCTaGGCCTGGGGCATGTCTTCC +
Preference number: 2 (lower is better)
Translates to: KPTEFLDCAKLFGKRKGSTCGQG*AWGMSS
Trigger: GGAAGACATGCCCCAGGCCCAGCCCTGACCACATGT...AGATCCTTTTCTCTTTCCAAACAGCTTTGCACAATCTAGAAATTCAGTGGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
3UTR CCA 72 bp ACAGGAATTAGCAACACATGTGGTCAGGGCTGGGCCTaGGGCATGTCTTCCCACGCACTGGACTGTAGACGT +
Preference number: 3 (lower is better)
Translates to: TGISNTCGQGWA*GMSSHALDCRR
Trigger: ACGTCTACAGTCCAGTGCGTGGGAAGACATGCCCCAGGCCCAGCCCTGACCACATGTGTTGCTAATTCCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
3UTR CCA 72 bp AACCAGACAGGAATTAGCAACACATGTGGTCAGGGCTaGGCCTGGGGCATGTCTTCCCACGCACTGGACTGT +
Preference number: 3 (lower is better)
Translates to: NQTGISNTCGQG*AWGMSSHALDC
Trigger: ACAGTCCAGTGCGTGGGAAGACATGCCCCAGGCCCAGCCCTGACCACATGTGTTGCTAATTCCTGTCTGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
3UTR GCA 72 bp GGAAAGAGAAAAGGATCTCTTGTGCCTCCCAAGCTCTaGCAGAGAGGAACCAGACAGGAATTAGCAACACAT +
Preference number: 3 (lower is better)
Translates to: GKRKGSLVPPKL*QRGTRQELATH
Trigger: ATGTGTTGCTAATTCCTGTCTGGTTCCTCTCTGGCAGAGCTTGGGAGGCACAAGAGATCCTTTTCTCTTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS-3UTR GCA 90 bp TGTGGTCAGGGCTGGGCCTGGGGCATGTCTTCCCACGCACTGGACTGTAGACGTTCCCACAGCCCTCATTaGCACAGCATCCGCAGCAGT +
Preference number: 4 (lower is better)
Translates to: CGQGWAWGMSSHALDCRRSHSPH*HSIRSS
Trigger: ACTGCTGCGGATGCTGTGGCAATGAGGGCTGTGGGA...ACGTCTACAGTCCAGTGCGTGGGAAGACATGCCCCAGGCCCAGCCCTGACCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS-3UTR GCA 90 bp AACACATGTGGTCAGGGCTGGGCCTGGGGCATGTCTTCCCACGCACTGGACTGTCAGCAGTCGTTGTTCTaGAGGCCCAAGAACACAAGC +
Preference number: 4 (lower is better)
Translates to: NTCGQGWAWGMSSHALDCQQSLF*RPKNTS
Trigger: GCTTGTGTTCTTGGGCCTGCAGAACAACGACTGCTG...ACAGTCCAGTGCGTGGGAAGACATGCCCCAGGCCCAGCCCTGACCACATGTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS-3UTR CCA 90 bp GGATCTCTTGTGCCTCCCAAGCTCTGCCAGAGAGGAACCAGACAGGAATTAGCAAGGCCATTGATCACCTaGATGGCACAGAGAACCATC +
Preference number: 4 (lower is better)
Translates to: GSLVPPKLCQRGTRQELARPLIT*MAQRTI
Trigger: GATGGTTCTCTGTGCCATCCAGGTGATCAATGGCCT...TGCTAATTCCTGTCTGGTTCCTCTCTGGCAGAGCTTGGGAGGCACAAGAGATCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
3UTR CAA 72 bp ATTGTGCAAAGCTGTTTGGAAAGAGAAAAGGATCTCTaGTGCCTCCCAAGCTCTGCCAGAGAGGAACCAGAC +
Preference number: 4 (lower is better)
Translates to: IVQSCLEREKDL*CLPSSAREEPD
Trigger: GTCTGGTTCCTCTCTGGCAGAGCTTGGGAGGCACAAGAGATCCTTTTCTCTTTCCAAACAGCTTTGCACAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS-3UTR CCA 90 bp TGCAAAGCTGTTTGGAAAGAGAAAAGGATCTCTTGTGCCTCCCAAGCTCTGCCAACCTCATCCGAAAGGTaGCTTTTGTCGTTCACCACT +
Preference number: 4 (lower is better)
Translates to: CKAVWKEKRISCASQALPTSSER*LLSFTT
Trigger: AGTGGTGAACGACAAAAGCCACCTTTCGGATGAGGT...TGGCAGAGCTTGGGAGGCACAAGAGATCCTTTTCTCTTTCCAAACAGCTTTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS-3UTR CCA 90 bp AAACCCACTGAATTTCTAGATTGTGCAAAGCTGTTTGGAAAGAGAAAAGGATCTGCACAGAGAACCATCTaGATCCCTCCGATGACCAGC +
Preference number: 4 (lower is better)
Translates to: KPTEFLDCAKLFGKRKGSAQRTI*IPPMTS
Trigger: GCTGGTCATCGGAGGGATCCAGATGGTTCTCTGTGC...AGATCCTTTTCTCTTTCCAAACAGCTTTGCACAATCTAGAAATTCAGTGGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS-3UTR CAA 90 bp GTGGTCAGGGCTGGGCCTGGGGCATGTCTTCCCACGCACTGGACTGTAGACGTGAGAACAACAGGATATTaGCCAGGAGGCCAAACACAG +
Preference number: 5 (lower is better)
Translates to: VVRAGPGACLPTHWTVDVRTTGY*PGGQTQ
Trigger: CTGTGTTTGGCCTCCTGGCAAATATCCTGTTGTTCT...CACGTCTACAGTCCAGTGCGTGGGAAGACATGCCCCAGGCCCAGCCCTGACCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS CCA 90 bp CACTGGCAGTCTCCACAGAGAGTTCCCAGGAGGCCATTGATCACCTaGATGGCACAGAGAACCATCTGGATCCCTCCGATGACCAGCAGA +
Preference number: 5 (lower is better)
Translates to: HWQSPQRVPRRPLIT*MAQRTIWIPPMTSR
Trigger: TCTGCTGGTCATCGGAGGGATCCAGATGGTTCTCTGTGCCATCCAGGTGATCAATGGCCTCCTGGGAACTCTCTGTGGAGACTGCCAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS GCA 90 bp TTCCCACAGCCCTCATTGCCACAGCATCCGCAGCAGTCGTTGTTCTaGAGGCCCAAGAACACAAGCGCAGGGAAGATCATCAAGACTCCA +
Preference number: 5 (lower is better)
Translates to: FPQPSLPQHPQQSLF*RPKNTSAGKIIKTP
Trigger: TGGAGTCTTGATGATCTTCCCTGCGCTTGTGTTCTTGGGCCTGCAGAACAACGACTGCTGCGGATGCTGTGGCAATGAGGGCTGTGGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS CCA 90 bp GTTCCCAGGAGGCCATTGATCACCTGGATGGCACAGAGAACCATCTaGATCCCTCCGATGACCAGCAGAATGGAGAAGAGGGTGAGGTTC +
Preference number: 5 (lower is better)
Translates to: VPRRPLITWMAQRTI*IPPMTSRMEKRVRF
Trigger: GAACCTCACCCTCTTCTCCATTCTGCTGGTCATCGGAGGGATCCAGATGGTTCTCTGTGCCATCCAGGTGATCAATGGCCTCCTGGGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS-3UTR CAA 90 bp TGCAAAGCTGTTTGGAAAGAGAAAAGGATCTCTTGTGCCTCCCAAGCTCTGCCATTCCCACAGCCCTCATaGCCACAGCATCCGCAGCAG +
Preference number: 5 (lower is better)
Translates to: CKAVWKEKRISCASQALPFPQPS*PQHPQQ
Trigger: CTGCTGCGGATGCTGTGGCAATGAGGGCTGTGGGAA...TGGCAGAGCTTGGGAGGCACAAGAGATCCTTTTCTCTTTCCAAACAGCTTTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS-3UTR CAA 90 bp AAAGCTGTTTGGAAAGAGAAAAGGATCTCTTGTGCCTCCCAAGCTCTGCCAGAGCATCCGCAGCAGTCGTaGTTCTGCAGGCCCAAGAAC +
Preference number: 5 (lower is better)
Translates to: KAVWKEKRISCASQALPEHPQQS*FCRPKN
Trigger: GTTCTTGGGCCTGCAGAACAACGACTGCTGCGGATG...CTCTGGCAGAGCTTGGGAGGCACAAGAGATCCTTTTCTCTTTCCAAACAGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS-3UTR CAA 90 bp AAAGCTGTTTGGAAAGAGAAAAGGATCTCTTGTGCCTCCCAAGCTCTGCCAGAGGTTCCCAGGAGGCCATaGATCACCTGGATGGCACAG +
Preference number: 5 (lower is better)
Translates to: KAVWKEKRISCASQALPEVPRRP*ITWMAQ
Trigger: CTGTGCCATCCAGGTGATCAATGGCCTCCTGGGAAC...CTCTGGCAGAGCTTGGGAGGCACAAGAGATCCTTTTCTCTTTCCAAACAGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS TCA 90 bp AGTAGCCAGCACCTAAGAATCCAATCACAGCAAACAACGTGGAGGTaGACATCGCAAATCGCTTCCCACAGCCCTCATTGCCACAGCATC +
Preference number: 5 (lower is better)
Translates to: SSQHLRIQSQQTTWR*TSQIASHSPHCHSI
Trigger: GATGCTGTGGCAATGAGGGCTGTGGGAAGCGATTTGCGATGTTCACCTCCACGTTGTTTGCTGTGATTGGATTCTTAGGTGCTGGCTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS-3UTR CAA 90 bp GAGAAAAGGATCTCTTGTGCCTCCCAAGCTCTGCCAGAGAGGAACCAGACAGGACATTTAGGACCCTTGTaGATAGAAACAGCTGAGACG +
Preference number: 5 (lower is better)
Translates to: EKRISCASQALPERNQTGHLGPL*IETAET
Trigger: CGTCTCAGCTGTTTCTATCAACAAGGGTCCTAAATG...TCCTGTCTGGTTCCTCTCTGGCAGAGCTTGGGAGGCACAAGAGATCCTTTTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS CCA 90 bp CCACTTCCCAATATTCCTCCGAAGTACCAGACCTCATCCGAAAGGTaGCTTTTGTCGTTCACCACTTTTCCTCCAGGAAAGAACAACAGG +
Preference number: 5 (lower is better)
Translates to: PLPNIPPKYQTSSER*LLSFTTFPPGKNNR
Trigger: CCTGTTGTTCTTTCCTGGAGGAAAAGTGGTGAACGACAAAAGCCACCTTTCGGATGAGGTCTGGTACTTCGGAGGAATATTGGGAAGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS-3UTR CAA 90 bp GGATCTCTTGTGCCTCCCAAGCTCTGCCAGAGAGGAACCAGACAGGAATTAGCAAAGCATTTAGGACCCTaGTTGATAGAAACAGCTGAG +
Preference number: 5 (lower is better)
Translates to: GSLVPPKLCQRGTRQELAKHLGP*LIETAE
Trigger: CTCAGCTGTTTCTATCAACAAGGGTCCTAAATGCTT...TGCTAATTCCTGTCTGGTTCCTCTCTGGCAGAGCTTGGGAGGCACAAGAGATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS CAA 72 bp CCACAGCCCTCATTGCCACAGCATCCGCAGCAGTCGTaGTTCTGCAGGCCCAAGAACACAAGCGCAGGGAAG +
Preference number: 6 (lower is better)
Translates to: PQPSLPQHPQQS*FCRPKNTSAGK
Trigger: CTTCCCTGCGCTTGTGTTCTTGGGCCTGCAGAACAACGACTGCTGCGGATGCTGTGGCAATGAGGGCTGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS CAA 90 bp CAGCCACAGCACTGGCAGTCTCCACAGAGAGTTCCCAGGAGGCCATaGATCACCTGGATGGCACAGAGAACCATCTGGATCCCTCCGATG +
Preference number: 6 (lower is better)
Translates to: QPQHWQSPQRVPRRP*ITWMAQRTIWIPPM
Trigger: CATCGGAGGGATCCAGATGGTTCTCTGTGCCATCCAGGTGATCAATGGCCTCCTGGGAACTCTCTGTGGAGACTGCCAGTGCTGTGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS GCA 72 bp CCCTCATTGCCACAGCATCCGCAGCAGTCGTTGTTCTaGAGGCCCAAGAACACAAGCGCAGGGAAGATCATC +
Preference number: 6 (lower is better)
Translates to: PSLPQHPQQSLF*RPKNTSAGKII
Trigger: GATGATCTTCCCTGCGCTTGTGTTCTTGGGCCTGCAGAACAACGACTGCTGCGGATGCTGTGGCAATGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS CAA 72 bp GAGGTGAACATCGCAAATCGCTTCCCACAGCCCTCATaGCCACAGCATCCGCAGCAGTCGTTGTTCTGCAGG +
Preference number: 6 (lower is better)
Translates to: EVNIANRFPQPS*PQHPQQSLFCR
Trigger: CCTGCAGAACAACGACTGCTGCGGATGCTGTGGCAATGAGGGCTGTGGGAAGCGATTTGCGATGTTCACCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS CAA 90 bp AATCGCTTCCCACAGCCCTCATTGCCACAGCATCCGCAGCAGTCGTaGTTCTGCAGGCCCAAGAACACAAGCGCAGGGAAGATCATCAAG +
Preference number: 6 (lower is better)
Translates to: NRFPQPSLPQHPQQS*FCRPKNTSAGKIIK
Trigger: CTTGATGATCTTCCCTGCGCTTGTGTTCTTGGGCCTGCAGAACAACGACTGCTGCGGATGCTGTGGCAATGAGGGCTGTGGGAAGCGATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS CAA 90 bp AACAACGTGGAGGTGAACATCGCAAATCGCTTCCCACAGCCCTCATaGCCACAGCATCCGCAGCAGTCGTTGTTCTGCAGGCCCAAGAAC +
Preference number: 6 (lower is better)
Translates to: NNVEVNIANRFPQPS*PQHPQQSLFCRPKN
Trigger: GTTCTTGGGCCTGCAGAACAACGACTGCTGCGGATGCTGTGGCAATGAGGGCTGTGGGAAGCGATTTGCGATGTTCACCTCCACGTTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS CCA 72 bp TCTCCACAGAGAGTTCCCAGGAGGCCATTGATCACCTaGATGGCACAGAGAACCATCTGGATCCCTCCGATG +
Preference number: 6 (lower is better)
Translates to: SPQRVPRRPLIT*MAQRTIWIPPM
Trigger: CATCGGAGGGATCCAGATGGTTCTCTGTGCCATCCAGGTGATCAATGGCCTCCTGGGAACTCTCTGTGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS CAA 72 bp CACTGGCAGTCTCCACAGAGAGTTCCCAGGAGGCCATaGATCACCTGGATGGCACAGAGAACCATCTGGATC +
Preference number: 6 (lower is better)
Translates to: HWQSPQRVPRRP*ITWMAQRTIWI
Trigger: GATCCAGATGGTTCTCTGTGCCATCCAGGTGATCAATGGCCTCCTGGGAACTCTCTGTGGAGACTGCCAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS CCA 72 bp AGGCCATTGATCACCTGGATGGCACAGAGAACCATCTaGATCCCTCCGATGACCAGCAGAATGGAGAAGAGG +
Preference number: 6 (lower is better)
Translates to: RPLITWMAQRTI*IPPMTSRMEKR
Trigger: CCTCTTCTCCATTCTGCTGGTCATCGGAGGGATCCAGATGGTTCTCTGTGCCATCCAGGTGATCAATGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS TCA 72 bp CACCTAAGAATCCAATCACAGCAAACAACGTGGAGGTaGACATCGCAAATCGCTTCCCACAGCCCTCATTGC +
Preference number: 6 (lower is better)
Translates to: HLRIQSQQTTWR*TSQIASHSPHC
Trigger: GCAATGAGGGCTGTGGGAAGCGATTTGCGATGTTCACCTCCACGTTGTTTGCTGTGATTGGATTCTTAGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8
CDS CCA 72 bp AATATTCCTCCGAAGTACCAGACCTCATCCGAAAGGTaGCTTTTGTCGTTCACCACTTTTCCTCCAGGAAAG +
Preference number: 6 (lower is better)
Translates to: NIPPKYQTSSER*LLSFTTFPPGK
Trigger: CTTTCCTGGAGGAAAAGTGGTGAACGACAAAAGCCACCTTTCGGATGAGGTCTGGTACTTCGGAGGAATATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029377.8