Pregenerated sensors for TM4SF20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026149Ensembl transcript IDs: ENSMUST00000027331.3
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTAGGCAGGCCTCAAACTCTGAATCCTCCAGCCTCTGCTCCTGAGTaGTGGGATCGAAGGCCTGTACCAGCCCTGCCCAGCTTGATAGGT | + |
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Preference number: 1 (lower is better) Translates to: LGRPQTLNPPASAPE*WDRRPVPALPSLIG Trigger: ACCTATCAAGCTGGGCAGGGCTGGTACAGGCCTTCGATCCCAGCACTCAGGAGCAGAGGCTGGAGGATTCAGAGTTTGAGGCCTGCCTAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| 3UTR-3UTR TCA 90 bp | AAGACACATACTTCTGTAACCATGAGGTGGACAATTGTTCTTTTGGCATACATATCCAGCCTCTGCTCCTaGGTGCTGGGATCGAAGGCC | + |
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Preference number: 2 (lower is better) Translates to: KTHTSVTMRWTIVLLAYISSLCS*VLGSKA Trigger: GGCCTTCGATCCCAGCACTCAGGAGCAGAGGCTGGA...TATGTATGCCAAAAGAACAATTGTCCACCTCATGGTTACAGAAGTATGTGTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| 3UTR-3UTR TCA 90 bp | AAGACACATACTTCTGTAACCATGAGGTGGACAATTGTTCTTTTGGCATACATAGCAGGCCTCAAACTCTaGATCCTCCAGCCTCTGCTC | + |
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Preference number: 2 (lower is better) Translates to: KTHTSVTMRWTIVLLAYIAGLKL*ILQPLL Trigger: GAGCAGAGGCTGGAGGATTCAGAGTTTGAGGCCTGC...TATGTATGCCAAAAGAACAATTGTCCACCTCATGGTTACAGAAGTATGTGTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| 3UTR-3UTR TCA 90 bp | AAGACACATACTTCTGTAACCATGAGGTGGACAATTGTTCTTTTGGCATACATACTGTTTGCACTAAAATaGCTCTGTGTTCTAGAAGAT | + |
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Preference number: 2 (lower is better) Translates to: KTHTSVTMRWTIVLLAYILFALK*LCVLED Trigger: ATCTTCTAGAACACAGAGTCATTTTAGTGCAAACAG...TATGTATGCCAAAAGAACAATTGTCCACCTCATGGTTACAGAAGTATGTGTCTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR TCA 90 bp | GCTCCTGAGTGCTGGGATCGAAGGCCTGTACCAGCCCTGCCCAGCTTGATAGGTCTGCCTCCACTAAGCTaGTTCCCAGGGGTATACAAT | + |
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Preference number: 4 (lower is better) Translates to: APECWDRRPVPALPSLIGLPPLS*FPGVYN Trigger: ATTGTATACCCCTGGGAATCAGCTTAGTGGAGGCAG...ACCTATCAAGCTGGGCAGGGCTGGTACAGGCCTTCGATCCCAGCACTCAGGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR TCA 90 bp | GCTCCTGAGTGCTGGGATCGAAGGCCTGTACCAGCCCTGCCCAGCTTGATAGGTCAAGAGAGCCTGGAGTaGTACCAACATGCAATACAC | + |
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Preference number: 4 (lower is better) Translates to: APECWDRRPVPALPSLIGQESLE*YQHAIH Trigger: GTGTATTGCATGTTGGTATCACTCCAGGCTCTCTTG...ACCTATCAAGCTGGGCAGGGCTGGTACAGGCCTTCGATCCCAGCACTCAGGAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR GCA 90 bp | GCTCCTGAGTGCTGGGATCGAAGGCCTGTACCAGCCCTGCCCAGCTTGATAGGTCGCTCTTTTTCTTGCTaGCAAGGACATTGTTGTTGC | + |
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Preference number: 4 (lower is better) Translates to: APECWDRRPVPALPSLIGRSFSC*QGHCCC Trigger: GCAACAACAATGTCCTTGGCAGCAAGAAAAAGAGCG...ACCTATCAAGCTGGGCAGGGCTGGTACAGGCCTTCGATCCCAGCACTCAGGAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR CCA 90 bp | GCTCCTGAGTGCTGGGATCGAAGGCCTGTACCAGCCCTGCCCAGCTTGATAGGTACTCATAGCAGGAGATaGGGTTTTGAGAAGTCGAGT | + |
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Preference number: 4 (lower is better) Translates to: APECWDRRPVPALPSLIGTHSRR*GFEKSS Trigger: ACTCGACTTCTCAAAACCCCATCTCCTGCTATGAGT...ACCTATCAAGCTGGGCAGGGCTGGTACAGGCCTTCGATCCCAGCACTCAGGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR TCA 90 bp | GCTCCTGAGTGCTGGGATCGAAGGCCTGTACCAGCCCTGCCCAGCTTGATAGGTATGAAAATTCACAAGTaGCAGTACTGTTGGCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: APECWDRRPVPALPSLIGMKIHK*QYCWPE Trigger: CTCAGGCCAACAGTACTGTCACTTGTGAATTTTCAT...ACCTATCAAGCTGGGCAGGGCTGGTACAGGCCTTCGATCCCAGCACTCAGGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR TCA 90 bp | GCTCCTGAGTGCTGGGATCGAAGGCCTGTACCAGCCCTGCCCAGCTTGATAGGTGAGACTCATAAATACTaGGAAGTGGAAAATCCTGTG | + |
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Preference number: 4 (lower is better) Translates to: APECWDRRPVPALPSLIGETHKY*EVENPV Trigger: CACAGGATTTTCCACTTCTCAGTATTTATGAGTCTC...ACCTATCAAGCTGGGCAGGGCTGGTACAGGCCTTCGATCCCAGCACTCAGGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR CCA 90 bp | AAGACACATACTTCTGTAACCATGAGGTGGACAATTGTTCTTTTGGCATACATAGGACATTGTTGTTGCTaGGATGGCCATCAGACCTGC | + |
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Preference number: 4 (lower is better) Translates to: KTHTSVTMRWTIVLLAYIGHCCC*DGHQTC Trigger: GCAGGTCTGATGGCCATCCCAGCAACAACAATGTCC...TATGTATGCCAAAAGAACAATTGTCCACCTCATGGTTACAGAAGTATGTGTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR TCA 90 bp | AAGACACATACTTCTGTAACCATGAGGTGGACAATTGTTCTTTTGGCATACATAAAACCAATGAGTATCTaGCTGAGCCCAAACAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: KTHTSVTMRWTIVLLAYIKPMSI*LSPNRS Trigger: GCTCCTGTTTGGGCTCAGTCAGATACTCATTGGTTT...TATGTATGCCAAAAGAACAATTGTCCACCTCATGGTTACAGAAGTATGTGTCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR GCA 90 bp | AAGACACATACTTCTGTAACCATGAGGTGGACAATTGTTCTTTTGGCATACATATCCCAGTCTTATTGTTaGAGCACGCTCTTTTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: KTHTSVTMRWTIVLLAYISQSYC*STLFFL Trigger: CAAGAAAAAGAGCGTGCTGCAACAATAAGACTGGGA...TATGTATGCCAAAAGAACAATTGTCCACCTCATGGTTACAGAAGTATGTGTCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR CCA 90 bp | AAGACACATACTTCTGTAACCATGAGGTGGACAATTGTTCTTTTGGCATACATATGCTCCTATAATTCCTaGAAACCACCACTCATAGCA | + |
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Preference number: 4 (lower is better) Translates to: KTHTSVTMRWTIVLLAYICSYNS*KPPLIA Trigger: TGCTATGAGTGGTGGTTTCCAGGAATTATAGGAGCA...TATGTATGCCAAAAGAACAATTGTCCACCTCATGGTTACAGAAGTATGTGTCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR TCA 90 bp | AAGACACATACTTCTGTAACCATGAGGTGGACAATTGTTCTTTTGGCATACATAACAGTACTGTTGGCCTaGGTATTACAAATTAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: KTHTSVTMRWTIVLLAYITVLLA*VLQIRG Trigger: ACCTCTAATTTGTAATACTCAGGCCAACAGTACTGT...TATGTATGCCAAAAGAACAATTGTCCACCTCATGGTTACAGAAGTATGTGTCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR CAA 90 bp | GCTCCTGAGTGCTGGGATCGAAGGCCTGTACCAGCCCTGCCCAGCTTGATAGGTCCAAGGACATTGTTGTaGCTGGGATGGCCATCAGAC | + |
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Preference number: 5 (lower is better) Translates to: APECWDRRPVPALPSLIGPRTLL*LGWPSD Trigger: GTCTGATGGCCATCCCAGCAACAACAATGTCCTTGG...ACCTATCAAGCTGGGCAGGGCTGGTACAGGCCTTCGATCCCAGCACTCAGGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR CAA 90 bp | GCTCCTGAGTGCTGGGATCGAAGGCCTGTACCAGCCCTGCCCAGCTTGATAGGTAGCACGCTCTTTTTCTaGCTGCCAAGGACATTGTTG | + |
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Preference number: 5 (lower is better) Translates to: APECWDRRPVPALPSLIGSTLFF*LPRTLL Trigger: CAACAATGTCCTTGGCAGCAAGAAAAAGAGCGTGCT...ACCTATCAAGCTGGGCAGGGCTGGTACAGGCCTTCGATCCCAGCACTCAGGAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR CAA 90 bp | GCTCCTGAGTGCTGGGATCGAAGGCCTGTACCAGCCCTGCCCAGCTTGATAGGTTCTTCAGAGTTGGAGTaGGGTATTTTCCAGTTACTG | + |
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Preference number: 5 (lower is better) Translates to: APECWDRRPVPALPSLIGSSELE*GIFQLL Trigger: CAGTAACTGGAAAATACCCAACTCCAACTCTGAAGA...ACCTATCAAGCTGGGCAGGGCTGGTACAGGCCTTCGATCCCAGCACTCAGGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS GCA 90 bp | AAGAAACATCCCAGTCTTATTGTTGCAGCACGCTCTTTTTCTTGCTaGCAAGGACATTGTTGTTGCTGGGATGGCCATCAGACCTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: KKHPSLIVAARSFSC*QGHCCCWDGHQTCS Trigger: GGAGCAGGTCTGATGGCCATCCCAGCAACAACAATGTCCTTGGCAGCAAGAAAAAGAGCGTGCTGCAACAATAAGACTGGGATGTTTCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS CCA 90 bp | CATTGTTGTTGCTGGGATGGCCATCAGACCTGCTCCTATAATTCCTaGAAACCACCACTCATAGCAGGAGATGGGGTTTTGAGAAGTCGA | + |
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Preference number: 5 (lower is better) Translates to: HCCCWDGHQTCSYNS*KPPLIAGDGVLRSR Trigger: TCGACTTCTCAAAACCCCATCTCCTGCTATGAGTGGTGGTTTCCAGGAATTATAGGAGCAGGTCTGATGGCCATCCCAGCAACAACAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR CAA 90 bp | AAGACACATACTTCTGTAACCATGAGGTGGACAATTGTTCTTTTGGCATACATACTGCCAAGGACATTGTaGTTGCTGGGATGGCCATCA | + |
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Preference number: 5 (lower is better) Translates to: KTHTSVTMRWTIVLLAYILPRTL*LLGWPS Trigger: TGATGGCCATCCCAGCAACAACAATGTCCTTGGCAG...TATGTATGCCAAAAGAACAATTGTCCACCTCATGGTTACAGAAGTATGTGTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS TCA 90 bp | CTTAAGTTTTTCAATGAAAATTCACAAGTGACAGTACTGTTGGCCTaGGTATTACAAATTAGAGGTCCTTCCAAGAGAGCCTGGAGTGAT | + |
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Preference number: 5 (lower is better) Translates to: LKFFNENSQVTVLLA*VLQIRGPSKRAWSD Trigger: ATCACTCCAGGCTCTCTTGGAAGGACCTCTAATTTGTAATACTCAGGCCAACAGTACTGTCACTTGTGAATTTTCATTGAAAAACTTAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR CAA 90 bp | AAGACACATACTTCTGTAACCATGAGGTGGACAATTGTTCTTTTGGCATACATAATCCCAGTCTTATTGTaGCAGCACGCTCTTTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: KTHTSVTMRWTIVLLAYIIPVLL*QHALFL Trigger: AAGAAAAAGAGCGTGCTGCAACAATAAGACTGGGAT...TATGTATGCCAAAAGAACAATTGTCCACCTCATGGTTACAGAAGTATGTGTCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR CAA 90 bp | AAGACACATACTTCTGTAACCATGAGGTGGACAATTGTTCTTTTGGCATACATAAACATCCCAGTCTTATaGTTGCAGCACGCTCTTTTT | + |
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Preference number: 5 (lower is better) Translates to: KTHTSVTMRWTIVLLAYINIPVL*LQHALF Trigger: AAAAAGAGCGTGCTGCAACAATAAGACTGGGATGTT...TATGTATGCCAAAAGAACAATTGTCCACCTCATGGTTACAGAAGTATGTGTCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS-3UTR CAA 90 bp | AAGACACATACTTCTGTAACCATGAGGTGGACAATTGTTCTTTTGGCATACATAAAGAACCACAGCAGATaGAAGGATTCAGGATCAAAT | + |
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Preference number: 5 (lower is better) Translates to: KTHTSVTMRWTIVLLAYIKNHSR*KDSGSN Trigger: ATTTGATCCTGAATCCTTCAATCTGCTGTGGTTCTT...TATGTATGCCAAAAGAACAATTGTCCACCTCATGGTTACAGAAGTATGTGTCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS TCA 72 bp | ACGCCACACAGACAGCCAAGGAAACCAATGAGTATCTaGCTGAGCCCAAACAGGAGCTCCAGGATTCCAACA | + |
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Preference number: 6 (lower is better) Translates to: TPHRQPRKPMSI*LSPNRSSRIPT Trigger: TGTTGGAATCCTGGAGCTCCTGTTTGGGCTCAGTCAGATACTCATTGGTTTCCTTGGCTGTCTGTGTGGCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS CAA 90 bp | GAAGTCGAGTCTGCCTCCACTAAGCTGATTCCCAGGGGTATACAATaGATAACCACTCCTAGCAGGATCAGAATGAGCAGGCTGAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: EVESASTKLIPRGIQ*ITTPSRIRMSRLKP Trigger: TGGCTTCAGCCTGCTCATTCTGATCCTGCTAGGAGTGGTTATCAATTGTATACCCCTGGGAATCAGCTTAGTGGAGGCAGACTCGACTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS GCA 72 bp | CATCCCAGTCTTATTGTTGCAGCACGCTCTTTTTCTTaGTGCCAAGGACATTGTTGTTGCTGGGATGGCCAT | + |
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Preference number: 6 (lower is better) Translates to: HPSLIVAARSFS*CQGHCCCWDGH Trigger: ATGGCCATCCCAGCAACAACAATGTCCTTGGCAGCAAGAAAAAGAGCGTGCTGCAACAATAAGACTGGGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS CAA 72 bp | ACATCCCAGTCTTATTGTTGCAGCACGCTCTTTTTCTaGCTGCCAAGGACATTGTTGTTGCTGGGATGGCCA | + |
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Preference number: 6 (lower is better) Translates to: TSQSYCCSTLFF*LPRTLLLLGWP Trigger: TGGCCATCCCAGCAACAACAATGTCCTTGGCAGCAAGAAAAAGAGCGTGCTGCAACAATAAGACTGGGATGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS CAA 90 bp | ATGAAAGAAACATCCCAGTCTTATTGTTGCAGCACGCTCTTTTTCTaGCTGCCAAGGACATTGTTGTTGCTGGGATGGCCATCAGACCTG | + |
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Preference number: 6 (lower is better) Translates to: MKETSQSYCCSTLFF*LPRTLLLLGWPSDL Trigger: CAGGTCTGATGGCCATCCCAGCAACAACAATGTCCTTGGCAGCAAGAAAAAGAGCGTGCTGCAACAATAAGACTGGGATGTTTCTTTCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS TCA 72 bp | TTCAATGAAAATTCACAAGTGACAGTACTGTTGGCCTaGGTATTACAAATTAGAGGTCCTTCCAAGAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: FNENSQVTVLLA*VLQIRGPSKRA Trigger: GGCTCTCTTGGAAGGACCTCTAATTTGTAATACTCAGGCCAACAGTACTGTCACTTGTGAATTTTCATTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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| CDS CAA 72 bp | TGGAAAATCCTGTGTCTGTCTTCTTCAGAGTTGGAGTaGGGTATTTTCCAGTTACTGACCATGTTATTGATG | + |
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Preference number: 6 (lower is better) Translates to: WKILCLSSSELE*GIFQLLTMLLM Trigger: CATCAATAACATGGTCAGTAACTGGAAAATACCCAACTCCAACTCTGAAGAAGACAGACACAGGATTTTCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027331.3 |
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