Pregenerated sensors for TM4SF19 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079625Ensembl transcript IDs: ENSMUST00000115149.3
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TGCAGAAAAGGTTGGGGGAAGCTTGTCCTGAGCGCGCCAATTCACGAGAGGGCATGGCATGCTTGCCAATaGGGCCCCTCATCAGGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: CRKGWGKLVLSAPIHERAWHACQ*GPSSGR Trigger: CCTACCTGATGAGGGGCCTCATTGGCAAGCATGCCA...TGCCCTCTCGTGAATTGGCGCGCTCAGGACAAGCTTCCCCCAACCTTTTCTGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS-3UTR TCA 90 bp | TATTCTTGCAGAAAAGGTTGGGGGAAGCTTGTCCTGAGCGCGCCAATTCACGAGCTGCCAGGAGAACCATaGGGCCTCCTCCCCAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: YSCRKGWGKLVLSAPIHELPGEP*GLLPRA Trigger: GGCTCTGGGGAGGAGGCCTCATGGTTCTCCTGGCAG...CTCGTGAATTGGCGCGCTCAGGACAAGCTTCCCCCAACCTTTTCTGCAAGAATA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS-3UTR GCA 90 bp | TATTCTTGCAGAAAAGGTTGGGGGAAGCTTGTCCTGAGCGCGCCAATTCACGAGGGAGATGAGGGTGGCTaGCAGGAGAACCATGAGGCC | + |
|
Preference number: 4 (lower is better) Translates to: YSCRKGWGKLVLSAPIHEGDEGG*QENHEA Trigger: GGCCTCATGGTTCTCCTGGCAGCCACCCTCATCTCC...CTCGTGAATTGGCGCGCTCAGGACAAGCTTCCCCCAACCTTTTCTGCAAGAATA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS-3UTR CCA 90 bp | ACAGCCTATTCTTGCAGAAAAGGTTGGGGGAAGCTTGTCCTGAGCGCGCCAATTAGAGGAGCGCGATGTTaGCACCAGCAGCACACAGGG | + |
|
Preference number: 4 (lower is better) Translates to: TAYSCRKGWGKLVLSAPIRGARC*HQQHTG Trigger: CCCTGTGTGCTGCTGGTGCCAACATCGCGCTCCTCT...AATTGGCGCGCTCAGGACAAGCTTCCCCCAACCTTTTCTGCAAGAATAGGCTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS-3UTR TCA 90 bp | ACAGCCTATTCTTGCAGAAAAGGTTGGGGGAAGCTTGTCCTGAGCGCGCCAATTTGCCTGTCATGGAGATaGGGGTGGCTGCCAGGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: TAYSCRKGWGKLVLSAPICLSWR*GWLPGE Trigger: TTCTCCTGGCAGCCACCCTCATCTCCATGACAGGCA...AATTGGCGCGCTCAGGACAAGCTTCCCCCAACCTTTTCTGCAAGAATAGGCTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS-3UTR TCA 90 bp | TATTCTTGCAGAAAAGGTTGGGGGAAGCTTGTCCTGAGCGCGCCAATTCACGAGGGCCGAGGATGCTATTaGCAAGATGGATGGCCACCA | + |
|
Preference number: 4 (lower is better) Translates to: YSCRKGWGKLVLSAPIHEGRGCY*QDGWPP Trigger: TGGTGGCCATCCATCTTGTCAATAGCATCCTCGGCC...CTCGTGAATTGGCGCGCTCAGGACAAGCTTCCCCCAACCTTTTCTGCAAGAATA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS-3UTR GCA 90 bp | GCCTATTCTTGCAGAAAAGGTTGGGGGAAGCTTGTCCTGAGCGCGCCAATTCACAGAGCAATGAGCACCTaGAGGCAGGGTGCACTCTTA | + |
|
Preference number: 4 (lower is better) Translates to: AYSCRKGWGKLVLSAPIHRAMST*RQGALL Trigger: TAAGAGTGCACCCTGCCTGCAGGTGCTCATTGCTCT...GTGAATTGGCGCGCTCAGGACAAGCTTCCCCCAACCTTTTCTGCAAGAATAGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS-3UTR TCA 90 bp | TATTCTTGCAGAAAAGGTTGGGGGAAGCTTGTCCTGAGCGCGCCAATTCACGAGTTGACAAAAGAGCAATaGGCACCTGCAGGCAGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: YSCRKGWGKLVLSAPIHELTKEQ*APAGRV Trigger: CACCCTGCCTGCAGGTGCTCATTGCTCTTTTGTCAA...CTCGTGAATTGGCGCGCTCAGGACAAGCTTCCCCCAACCTTTTCTGCAAGAATA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS-3UTR TCA 90 bp | TGCAGAAAAGGTTGGGGGAAGCTTGTCCTGAGCGCGCCAATTCACGAGAGGGCAAACGGAGGTCCAAAGTaGACGGTCATACAGATAATT | + |
|
Preference number: 4 (lower is better) Translates to: CRKGWGKLVLSAPIHERANGGPK*TVIQII Trigger: AATTATCTGTATGACCGTTCACTTTGGACCTCCGTT...TGCCCTCTCGTGAATTGGCGCGCTCAGGACAAGCTTCCCCCAACCTTTTCTGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS-3UTR CCA 90 bp | CACAGCCTATTCTTGCAGAAAAGGTTGGGGGAAGCTTGTCCTGAGCGCGCCAATATGCTATTGACAAGATaGATGGCCACCAAGAGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: HSLFLQKRLGEACPERANMLLTR*MATKRS Trigger: GCTTCTCTTGGTGGCCATCCATCTTGTCAATAGCAT...ATTGGCGCGCTCAGGACAAGCTTCCCCCAACCTTTTCTGCAAGAATAGGCTGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS-3UTR GCA 90 bp | CATCCTATAAGAAGGTCTAAAGGGGATTCACAGCCTATTCTTGCAGAAAAGGTTGAGCCCAGCATGGCATaGTTGCCAATGAGGCCCCTC | + |
|
Preference number: 4 (lower is better) Translates to: HPIRRSKGDSQPILAEKVEPSMA*LPMRPL Trigger: GAGGGGCCTCATTGGCAAGCATGCCATGCTGGGCTC...AACCTTTTCTGCAAGAATAGGCTGTGAATCCCCTTTAGACCTTCTTATAGGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS-3UTR TCA 90 bp | TATTCTTGCAGAAAAGGTTGGGGGAAGCTTGTCCTGAGCGCGCCAATTCACGAGTTCCAAGCTTGTGTCTaGTTGAAGGATGAGACATCA | + |
|
Preference number: 4 (lower is better) Translates to: YSCRKGWGKLVLSAPIHEFQACV*LKDETS Trigger: TGATGTCTCATCCTTCAATCAGACACAAGCTTGGAA...CTCGTGAATTGGCGCGCTCAGGACAAGCTTCCCCCAACCTTTTCTGCAAGAATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS-3UTR TCA 90 bp | TATTCTTGCAGAAAAGGTTGGGGGAAGCTTGTCCTGAGCGCGCCAATTCACGAGAAGCTTGTGTCTGATTaGAGGATGAGACATCAAACA | + |
|
Preference number: 4 (lower is better) Translates to: YSCRKGWGKLVLSAPIHEKLVSD*RMRHQT Trigger: TGTTTGATGTCTCATCCTTCAATCAGACACAAGCTT...CTCGTGAATTGGCGCGCTCAGGACAAGCTTCCCCCAACCTTTTCTGCAAGAATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS-3UTR GCA 90 bp | CACAGCCTATTCTTGCAGAAAAGGTTGGGGGAAGCTTGTCCTGAGCGCGCCAATATGAGACATCAAACATaGAAAAGGGACCATCTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: HSLFLQKRLGEACPERANMRHQT*KRDHLS Trigger: TGAAAGATGGTCCCTTTTGCATGTTTGATGTCTCAT...ATTGGCGCGCTCAGGACAAGCTTCCCCCAACCTTTTCTGCAAGAATAGGCTGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS-3UTR TCA 90 bp | ACAGCCTATTCTTGCAGAAAAGGTTGGGGGAAGCTTGTCCTGAGCGCGCCAATTTGTCTGATTGAAGGATaGGACATCAAACATGCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: TAYSCRKGWGKLVLSAPICLIEG*DIKHAK Trigger: TTTTGCATGTTTGATGTCTCATCCTTCAATCAGACA...AATTGGCGCGCTCAGGACAAGCTTCCCCCAACCTTTTCTGCAAGAATAGGCTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS-3UTR TCA 90 bp | CATCCTATAAGAAGGTCTAAAGGGGATTCACAGCCTATTCTTGCAGAAAAGGTTAGGCTACTCCAGAAGTaGCAAAGCAAATCACAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: HPIRRSKGDSQPILAEKVRLLQK*QSKSQP Trigger: GGGCTGTGATTTGCTTTGTCACTTCTGGAGTAGCCT...AACCTTTTCTGCAAGAATAGGCTGTGAATCCCCTTTAGACCTTCTTATAGGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS GCA 90 bp | GCCCCAAGCAGAGCCAGGCCACTTGACAAAAGAGCAATGAGCACCTaGAGGCAGGGTGCACTCTTACTGAAGCTGCCTGTCATGGAGATG | + |
|
Preference number: 5 (lower is better) Translates to: APSRARPLDKRAMST*RQGALLLKLPVMEM Trigger: CATCTCCATGACAGGCAGCTTCAGTAAGAGTGCACCCTGCCTGCAGGTGCTCATTGCTCTTTTGTCAAGTGGCCTGGCTCTGCTTGGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS-3UTR CAA 90 bp | CACAGCCTATTCTTGCAGAAAAGGTTGGGGGAAGCTTGTCCTGAGCGCGCCAATCCCAGCATGGCATGCTaGCCAATGAGGCCCCTCATC | + |
|
Preference number: 5 (lower is better) Translates to: HSLFLQKRLGEACPERANPSMAC*PMRPLI Trigger: GATGAGGGGCCTCATTGGCAAGCATGCCATGCTGGG...ATTGGCGCGCTCAGGACAAGCTTCCCCCAACCTTTTCTGCAAGAATAGGCTGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS CCA 90 bp | AGGCCGAGGATGCTATTGACAAGATGGATGGCCACCAAGAGAAGCTaGAGGAGGCTGATACACAGGAGGATGGAGAAGAAGGCCACGTGC | + |
|
Preference number: 5 (lower is better) Translates to: RPRMLLTRWMATKRS*RRLIHRRMEKKATC Trigger: GCACGTGGCCTTCTTCTCCATCCTCCTGTGTATCAGCCTCCTCCAGCTTCTCTTGGTGGCCATCCATCTTGTCAATAGCATCCTCGGCCT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS TCA 90 bp | AGAAGTGACAAAGCAAATCACAGCCCCAAGCAGAGCCAGGCCACTTaGCAAAAGAGCAATGAGCACCTGCAGGCAGGGTGCACTCTTACT | + |
|
Preference number: 5 (lower is better) Translates to: RSDKANHSPKQSQAT*QKSNEHLQAGCTLT Trigger: AGTAAGAGTGCACCCTGCCTGCAGGTGCTCATTGCTCTTTTGTCAAGTGGCCTGGCTCTGCTTGGGGCTGTGATTTGCTTTGTCACTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS TCA 90 bp | CATCAAACATGCAAAAGGGACCATCTTTCAAGGCTACTCCAGAAGTaGCAAAGCAAATCACAGCCCCAAGCAGAGCCAGGCCACTTGACA | + |
|
Preference number: 5 (lower is better) Translates to: HQTCKRDHLSRLLQK*QSKSQPQAEPGHLT Trigger: TGTCAAGTGGCCTGGCTCTGCTTGGGGCTGTGATTTGCTTTGTCACTTCTGGAGTAGCCTTGAAAGATGGTCCCTTTTGCATGTTTGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS TCA 90 bp | TTTAAAGGGATAGCCGAATTTCCAAGCTTGTGTCTGATTGAAGGATaGGACATCAAACATGCAAAAGGGACCATCTTTCAAGGCTACTCC | + |
|
Preference number: 5 (lower is better) Translates to: FKGIAEFPSLCLIEG*DIKHAKGTIFQGYS Trigger: GGAGTAGCCTTGAAAGATGGTCCCTTTTGCATGTTTGATGTCTCATCCTTCAATCAGACACAAGCTTGGAAATTCGGCTATCCCTTTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS CAA 72 bp | TTCTCACAGAAGCTGCAGAACAGGCCGAGGATGCTATaGACAAGATGGATGGCCACCAAGAGAAGCTGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: FSQKLQNRPRML*TRWMATKRSWR Trigger: CCTCCAGCTTCTCTTGGTGGCCATCCATCTTGTCAATAGCATCCTCGGCCTGTTCTGCAGCTTCTGTGAGAA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS CCA 72 bp | ATGCTATTGACAAGATGGATGGCCACCAAGAGAAGCTaGAGGAGGCTGATACACAGGAGGATGGAGAAGAAG | + |
|
Preference number: 6 (lower is better) Translates to: MLLTRWMATKRS*RRLIHRRMEKK Trigger: CTTCTTCTCCATCCTCCTGTGTATCAGCCTCCTCCAGCTTCTCTTGGTGGCCATCCATCTTGTCAATAGCAT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||
| CDS TCA 72 bp | ATAGCCGAATTTCCAAGCTTGTGTCTGATTGAAGGATaGGACATCAAACATGCAAAAGGGACCATCTTTCAA | + |
|
Preference number: 6 (lower is better) Translates to: IAEFPSLCLIEG*DIKHAKGTIFQ Trigger: TTGAAAGATGGTCCCTTTTGCATGTTTGATGTCTCATCCTTCAATCAGACACAAGCTTGGAAATTCGGCTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115149.3 |
||