Pregenerated sensors for TM4SF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027800Ensembl transcript IDs: ENSMUST00000029376.13, ENSMUST00000171384.8, ENSMUST00000196506.2, ENSMUST00000196979.5
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAAGCAGGAGAGAGGACCCAGAGGAAAGCAAGACCTTGGCATAGATaGTACCCAACCTGTAGACCACAGGTCACTGAGAGGGAGGGAAAA | + |
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Preference number: 1 (lower is better) Translates to: KAGERTQRKARPWHR*YPTCRPQVTEREGK Trigger: TTTTCCCTCCCTCTCAGTGACCTGTGGTCTACAGGTTGGGTAGCATCTATGCCAAGGTCTTGCTTTCCTCTGGGTCCTCTCTCCTGCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR TCA 90 bp | ACATCTGGCCCCCAGTCCCTTTCTCTATCTGCTTCCTATCTACCATaGAGTGATCTGTGTCCTGTTATGCATGCTCCTACCAGAAGGAGG | + |
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Preference number: 1 (lower is better) Translates to: TSGPQSLSLSASYLP*SDLCPVMHAPTRRR Trigger: CCTCCTTCTGGTAGGAGCATGCATAACAGGACACAGATCACTTCATGGTAGATAGGAAGCAGATAGAGAAAGGGACTGGGGGCCAGATGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR TCA 90 bp | CCTGTAGACCACAGGTCACTGAGAGGGAGGGAAAAACAGAAGCTGTaGACAATGACATTGGCTTGTCCTACTGAGTGTATTCACTGTGTG | + |
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Preference number: 1 (lower is better) Translates to: PVDHRSLRGREKQKL*TMTLACPTECIHCV Trigger: CACACAGTGAATACACTCAGTAGGACAAGCCAATGTCATTGTTCACAGCTTCTGTTTTTCCCTCCCTCTCAGTGACCTGTGGTCTACAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR CCA 90 bp | ATGTTTTACCTGCATGCATGTCTGTGCACCACATGTAGGCACCTGTaGAACCAGAAGAGAATATTGGATCCACTGACACTGGAGTTACAG | + |
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Preference number: 1 (lower is better) Translates to: MFYLHACLCTTCRHL*NQKRILDPLTLELQ Trigger: CTGTAACTCCAGTGTCAGTGGATCCAATATTCTCTTCTGGTTCCACAGGTGCCTACATGTGGTGCACAGACATGCATGCAGGTAAAACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR GCA 90 bp | GCACATTTCCTTACAAAAGCAGAAAGGGTAGGATGTGGCACAAGGTaGAAAGTCTCACAACACAGGGAAAATATACAAATTACAGTGAAA | + |
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Preference number: 1 (lower is better) Translates to: AHFLTKAERVGCGTR*KVSQHRENIQITVK Trigger: TTTCACTGTAATTTGTATATTTTCCCTGTGTTGTGAGACTTTGCACCTTGTGCCACATCCTACCCTTTCTGCTTTTGTAAGGAAATGTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR CCA 90 bp | TCCCAATTGCTATTATCTGAATGTGTTTCTTTAATAGTTGGTCCTTaGATGGTCCTAGGAGATAGTAGGGACTTTAGAAGTAGGACCTTG | + |
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Preference number: 1 (lower is better) Translates to: SQLLLSECVSLIVGP*MVLGDSRDFRSRTL Trigger: CAAGGTCCTACTTCTAAAGTCCCTACTATCTCCTAGGACCATCCAAGGACCAACTATTAAAGAAACACATTCAGATAATAGCAATTGGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR-3UTR GCA 90 bp | GCTACCCAACCTGTAGACCACAGGTCACTGAGAGGGAGGGAAAAACAGAAGCTGGTGACTCCGATAAATTaGCTGATGAGAGAGGGTGTC | + |
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Preference number: 2 (lower is better) Translates to: ATQPVDHRSLRGREKQKLVTPIN*LMREGV Trigger: GACACCCTCTCTCATCAGGCAATTTATCGGAGTCAC...CAGCTTCTGTTTTTCCCTCCCTCTCAGTGACCTGTGGTCTACAGGTTGGGTAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR-3UTR CCA 90 bp | CTGTGCACCACATGTAGGCACCTGTGGAACCAGAAGAGAATATTGGATCCACTGGCTCAGAAGCAAGCTTaGGAAGCATTCCCCTGTGAG | + |
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Preference number: 2 (lower is better) Translates to: LCTTCRHLWNQKRILDPLAQKQA*EAFPCE Trigger: CTCACAGGGGAATGCTTCCCAAGCTTGCTTCTGAGC...CAGTGGATCCAATATTCTCTTCTGGTTCCACAGGTGCCTACATGTGGTGCACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR-3UTR TCA 90 bp | AAGCAAGACCTTGGCATAGATGCTACCCAACCTGTAGACCACAGGTCACTGAGACAGAAGCCTGTACTCTaGAAACGTCTTTTGTCTTCC | + |
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Preference number: 2 (lower is better) Translates to: KQDLGIDATQPVDHRSLRQKPVL*KRLLSS Trigger: GGAAGACAAAAGACGTTTTCAGAGTACAGGCTTCTG...TCTCAGTGACCTGTGGTCTACAGGTTGGGTAGCATCTATGCCAAGGTCTTGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR-3UTR CCA 90 bp | ATAACAAGGTGTAATTTGTGCACCAAGAGAGAAAAACATACTACCTTACCCAGGGCTCAGAAGCAAGCTTaGGAAGCATTCCCCTGTGAG | + |
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Preference number: 2 (lower is better) Translates to: ITRCNLCTKREKHTTLPRAQKQA*EAFPCE Trigger: CTCACAGGGGAATGCTTCCCAAGCTTGCTTCTGAGC...CCTGGGTAAGGTAGTATGTTTTTCTCTCTTGGTGCACAAATTACACCTTGTTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR CAA 90 bp | TTTCTATGTGTTAGGAAGAAGTCCTCTCTACGTGACTCCGATAAATaGCCTGATGAGAGAGGGTGTCACTTCAGACGTAAAACTAAAGCC | + |
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Preference number: 2 (lower is better) Translates to: FLCVRKKSSLRDSDK*PDERGCHFRRKTKA Trigger: GGCTTTAGTTTTACGTCTGAAGTGACACCCTCTCTCATCAGGCAATTTATCGGAGTCACGTAGAGAGGACTTCTTCCTAACACATAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR-3UTR GCA 90 bp | ATTGTCAGTATTATATATTTCCTCTCCCATACTTGGGTTAGCACGCTCTCAATGGGATGTGGCACAAGGTaGAAAGTCTCACAACACAGG | + |
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Preference number: 2 (lower is better) Translates to: IVSIIYFLSHTWVSTLSMGCGTR*KVSQHR Trigger: CCTGTGTTGTGAGACTTTGCACCTTGTGCCACATCC...CATTGAGAGCGTGCTAACCCAAGTATGGGAGAGGAAATATATAATACTGACAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR-3UTR GCA 90 bp | AAGCAAGACCTTGGCATAGATGCTACCCAACCTGTAGACCACAGGTCACTGAGAGAATACTTAATTTTATaGTCAGAAGCAAGCTTGGGA | + |
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Preference number: 2 (lower is better) Translates to: KQDLGIDATQPVDHRSLREYLIL*SEASLG Trigger: TCCCAAGCTTGCTTCTGAGCATAAAATTAAGTATTC...TCTCAGTGACCTGTGGTCTACAGGTTGGGTAGCATCTATGCCAAGGTCTTGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR-3UTR GCA 90 bp | CTGTGCACCACATGTAGGCACCTGTGGAACCAGAAGAGAATATTGGATCCACTGACAAGGTGTAATTTGTaGACCAAGAGAGAAAAACAT | + |
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Preference number: 2 (lower is better) Translates to: LCTTCRHLWNQKRILDPLTRCNL*TKREKH Trigger: ATGTTTTTCTCTCTTGGTGCACAAATTACACCTTGT...CAGTGGATCCAATATTCTCTTCTGGTTCCACAGGTGCCTACATGTGGTGCACAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR-3UTR CCA 90 bp | AAGCAAGACCTTGGCATAGATGCTACCCAACCTGTAGACCACAGGTCACTGAGATCATTCACATACAAATaGGAAACAGCATATGAACAG | + |
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Preference number: 2 (lower is better) Translates to: KQDLGIDATQPVDHRSLRSFTYK*ETAYEQ Trigger: CTGTTCATATGCTGTTTCCCATTTGTATGTGAATGA...TCTCAGTGACCTGTGGTCTACAGGTTGGGTAGCATCTATGCCAAGGTCTTGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR-3UTR TCA 90 bp | TATTTCCTCTCCCATACTTGGGTTAGCACGCTCTCAATGAGATTTCCGAATCCAATATACAAATTACAGTaGAATACAGGAAGCACGCCC | + |
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Preference number: 2 (lower is better) Translates to: YFLSHTWVSTLSMRFPNPIYKLQ*NTGSTP Trigger: GGGCGTGCTTCCTGTATTTCACTGTAATTTGTATAT...TGGATTCGGAAATCTCATTGAGAGCGTGCTAACCCAAGTATGGGAGAGGAAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR-3UTR TCA 90 bp | CTTAAGTCTGTAAAATCCCTTCGGAGAGAGTGCAGTTTGCTGCCTTGTTTGTTTATATACAAATTACAGTaGAATACAGGAAGCACGCCC | + |
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Preference number: 2 (lower is better) Translates to: LKSVKSLRRECSLLPCLFIYKLQ*NTGSTP Trigger: GGGCGTGCTTCCTGTATTTCACTGTAATTTGTATAT...AAACAAACAAGGCAGCAAACTGCACTCTCTCCGAAGGGATTTTACAGACTTAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR-3UTR GCA 90 bp | ACATACTACCTTACCCAGGACTTTGATAACTGGAGCACCCAGCAGAAAGAAAGAGAATACTTAATTTTATaGTCAGAAGCAAGCTTGGGA | + |
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Preference number: 2 (lower is better) Translates to: TYYLTQDFDNWSTQQKEREYLIL*SEASLG Trigger: TCCCAAGCTTGCTTCTGAGCATAAAATTAAGTATTC...TCTTTCTTTCTGCTGGGTGCTCCAGTTATCAAAGTCCTGGGTAAGGTAGTATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR-3UTR TCA 90 bp | ATCTCAAACACTGAAGAGTTTATCTCAGCTATGCTGAGAACAGTCCTTAAGTCTATATACAAATTACAGTaGAATACAGGAAGCACGCCC | + |
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Preference number: 2 (lower is better) Translates to: ISNTEEFISAMLRTVLKSIYKLQ*NTGSTP Trigger: GGGCGTGCTTCCTGTATTTCACTGTAATTTGTATAT...AGACTTAAGGACTGTTCTCAGCATAGCTGAGATAAACTCTTCAGTGTTTGAGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR CAA 90 bp | TCTTTGAAAGGCAAAAAGGTTTCTACAAGCTGCACAACTTCAGCCTaGAGTAGTGTTTCACAGACATTGTCAGTATTATATATTTCCTCT | + |
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Preference number: 2 (lower is better) Translates to: SLKGKKVSTSCTTSA*SSVSQTLSVLYISS Trigger: AGAGGAAATATATAATACTGACAATGTCTGTGAAACACTACTCAAGGCTGAAGTTGTGCAGCTTGTAGAAACCTTTTTGCCTTTCAAAGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR CAA 90 bp | AGGACAATGAATAACCAAAGCCAAGTCCTCTGTATAAAATCCCAATaGCTATTATCTGAATGTGTTTCTTTAATAGTTGGTCCTTGGATG | + |
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Preference number: 2 (lower is better) Translates to: RTMNNQSQVLCIKSQ*LLSECVSLIVGPWM Trigger: CATCCAAGGACCAACTATTAAAGAAACACATTCAGATAATAGCAATTGGGATTTTATACAGAGGACTTGGCTTTGGTTATTCATTGTCCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR GCA 72 bp | GAGAGGACCCAGAGGAAAGCAAGACCTTGGCATAGATaGTACCCAACCTGTAGACCACAGGTCACTGAGAGG | + |
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Preference number: 3 (lower is better) Translates to: ERTQRKARPWHR*YPTCRPQVTER Trigger: CCTCTCAGTGACCTGTGGTCTACAGGTTGGGTAGCATCTATGCCAAGGTCTTGCTTTCCTCTGGGTCCTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR TCA 72 bp | CCCCAGTCCCTTTCTCTATCTGCTTCCTATCTACCATaGAGTGATCTGTGTCCTGTTATGCATGCTCCTACC | + |
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Preference number: 3 (lower is better) Translates to: PQSLSLSASYLP*SDLCPVMHAPT Trigger: GGTAGGAGCATGCATAACAGGACACAGATCACTTCATGGTAGATAGGAAGCAGATAGAGAAAGGGACTGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR-3UTR CAA 90 bp | CTGTGCACCACATGTAGGCACCTGTGGAACCAGAAGAGAATATTGGATCCACTGAGCCATGGTTATCTGTaGATAGAAAAGGCAGAAGAG | + |
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Preference number: 3 (lower is better) Translates to: LCTTCRHLWNQKRILDPLSHGYL*IEKAEE Trigger: CTCTTCTGCCTTTTCTATCAACAGATAACCATGGCT...CAGTGGATCCAATATTCTCTTCTGGTTCCACAGGTGCCTACATGTGGTGCACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR GCA 72 bp | ACTGGAGTTACAGACAGTTATAACCTGCAGTGTGAGTaGTGGGACTCAAAACTAGGTCCTCTGGAAGAGCAA | + |
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Preference number: 3 (lower is better) Translates to: TGVTDSYNLQCE*WDSKLGPLEEQ Trigger: TTGCTCTTCCAGAGGACCTAGTTTTGAGTCCCAGCACTCACACTGCAGGTTATAACTGTCTGTAACTCCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR TCA 72 bp | GTCCCTTTCTCTATCTGCTTCCTATCTACCATGAAGTaGTCTGTGTCCTGTTATGCATGCTCCTACCAGAAG | + |
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Preference number: 3 (lower is better) Translates to: VPFSICFLSTMK*SVSCYACSYQK Trigger: CTTCTGGTAGGAGCATGCATAACAGGACACAGATCACTTCATGGTAGATAGGAAGCAGATAGAGAAAGGGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR-3UTR CAA 90 bp | GACTTTGATAACTGGAGCACCCAGCAGAAAGAAAGATATCTAGCTGATTTGAGACGTGACTCCGATAAATaGCCTGATGAGAGAGGGTGT | + |
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Preference number: 3 (lower is better) Translates to: DFDNWSTQQKERYLADLRRDSDK*PDERGC Trigger: ACACCCTCTCTCATCAGGCAATTTATCGGAGTCACG...TCTCAAATCAGCTAGATATCTTTCTTTCTGCTGGGTGCTCCAGTTATCAAAGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR GCA 72 bp | TTAGGAAGAAGTCCTCTCTACGTGACTCCGATAAATTaGCTGATGAGAGAGGGTGTCACTTCAGACGTAAAA | + |
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Preference number: 3 (lower is better) Translates to: LGRSPLYVTPIN*LMREGVTSDVK Trigger: TTTTACGTCTGAAGTGACACCCTCTCTCATCAGGCAATTTATCGGAGTCACGTAGAGAGGACTTCTTCCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR TCA 72 bp | AAGTCTCACAACACAGGGAAAATATACAAATTACAGTaGAATACAGGAAGCACGCCCTTCTGTCTTGTGTTC | + |
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Preference number: 3 (lower is better) Translates to: KSHNTGKIYKLQ*NTGSTPFCLVF Trigger: GAACACAAGACAGAAGGGCGTGCTTCCTGTATTTCACTGTAATTTGTATATTTTCCCTGTGTTGTGAGACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR CCA 72 bp | GACATTGTCAGTATTATATATTTCCTCTCCCATACTTaGGTTAGCACGCTCTCAATGAGATTTCCGAATCCA | + |
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Preference number: 3 (lower is better) Translates to: DIVSIIYFLSHT*VSTLSMRFPNP Trigger: TGGATTCGGAAATCTCATTGAGAGCGTGCTAACCCAAGTATGGGAGAGGAAATATATAATACTGACAATGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR CCA 72 bp | AGAAAAACATACTACCTTACCCAGGACTTTGATAACTaGAGCACCCAGCAGAAAGAAAGATATCTAGCTGAT | + |
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Preference number: 3 (lower is better) Translates to: RKTYYLTQDFDN*STQQKERYLAD Trigger: ATCAGCTAGATATCTTTCTTTCTGCTGGGTGCTCCAGTTATCAAAGTCCTGGGTAAGGTAGTATGTTTTTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR-3UTR CAA 90 bp | TTTATCTCAGCTATGCTGAGAACAGTCCTTAAGTCTGTAAAATCCCTTCGGAGAAGTTTGCTGCCTTGTTaGTTTTGTGAATGTAAACAC | + |
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Preference number: 3 (lower is better) Translates to: FISAMLRTVLKSVKSLRRSLLPC*FCECKH Trigger: GTGTTTACATTCACAAAACAAACAAGGCAGCAAACT...TCTCCGAAGGGATTTTACAGACTTAAGGACTGTTCTCAGCATAGCTGAGATAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR TCA 72 bp | AGTTTGCTGCCTTGTTTGTTTTGTGAATGTAAACACTaGCATCATGTGATGACGTCAGCACATTTCCTTACA | + |
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Preference number: 3 (lower is better) Translates to: SLLPCLFCECKH*HHVMTSAHFLT Trigger: TGTAAGGAAATGTGCTGACGTCATCACATGATGTCAGTGTTTACATTCACAAAACAAACAAGGCAGCAAACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR-3UTR CAA 90 bp | ATTGTCAGTATTATATATTTCCTCTCCCATACTTGGGTTAGCACGCTCTCAATGAGTTTGCTGCCTTGTTaGTTTTGTGAATGTAAACAC | + |
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Preference number: 3 (lower is better) Translates to: IVSIIYFLSHTWVSTLSMSLLPC*FCECKH Trigger: GTGTTTACATTCACAAAACAAACAAGGCAGCAAACT...CATTGAGAGCGTGCTAACCCAAGTATGGGAGAGGAAATATATAATACTGACAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR CCA 72 bp | CTATTATCTGAATGTGTTTCTTTAATAGTTGGTCCTTaGATGGTCCTAGGAGATAGTAGGGACTTTAGAAGT | + |
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Preference number: 3 (lower is better) Translates to: LLSECVSLIVGP*MVLGDSRDFRS Trigger: ACTTCTAAAGTCCCTACTATCTCCTAGGACCATCCAAGGACCAACTATTAAAGAAACACATTCAGATAATAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR TCA 72 bp | CCAAGTCCTCTGTATAAAATCCCAATTGCTATTATCTaGATGTGTTTCTTTAATAGTTGGTCCTTGGATGGT | + |
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Preference number: 3 (lower is better) Translates to: PSPLYKIPIAII*MCFFNSWSLDG Trigger: ACCATCCAAGGACCAACTATTAAAGAAACACATTCAGATAATAGCAATTGGGATTTTATACAGAGGACTTGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR CCA 90 bp | GCAGAAAGGGTAGGATGTGGCACAAGGTGCAAAGTCTCACAACACAGGGAAAATGGCATCGCTGCACTTTaGTCCTTCTGCCAAACCCAG | + |
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Preference number: 4 (lower is better) Translates to: AERVGCGTRCKVSQHRENGIAAL*SFCQTQ Trigger: CTGGGTTTGGCAGAAGGACCAAAGTGCAGCGATGCC...ATTTTCCCTGTGTTGTGAGACTTTGCACCTTGTGCCACATCCTACCCTTTCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR TCA 90 bp | CTGTGCACCACATGTAGGCACCTGTGGAACCAGAAGAGAATATTGGATCCACTGTTCTGCCAAACCCAGTaGTGCCACAATGACACAGTA | + |
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Preference number: 4 (lower is better) Translates to: LCTTCRHLWNQKRILDPLFCQTQ*CHNDTV Trigger: TACTGTGTCATTGTGGCATCACTGGGTTTGGCAGAA...CAGTGGATCCAATATTCTCTTCTGGTTCCACAGGTGCCTACATGTGGTGCACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR GCA 90 bp | TCATGTGATGACGTCAGCACATTTCCTTACAAAAGCAGAAAGGGTAGGATGTGGCTCCATGGGCATCGCTaGACTTTGGTCCTTCTGCCA | + |
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Preference number: 4 (lower is better) Translates to: SCDDVSTFPYKSRKGRMWLHGHR*TLVLLP Trigger: TGGCAGAAGGACCAAAGTGCAGCGATGCCCATGGAG...CCACATCCTACCCTTTCTGCTTTTGTAAGGAAATGTGCTGACGTCATCACATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR CCA 90 bp | CTTACAAAAGCAGAAAGGGTAGGATGTGGCACAAGGTGCAAAGTCTCACAACACAATGAACACAAACGCTaGCAGGAGCATCAGCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: LTKAERVGCGTRCKVSQHNEHKR*QEHQQA Trigger: GGCCTGCTGATGCTCCTGCCAGCGTTTGTGTTCATT...GTGTTGTGAGACTTTGCACCTTGTGCCACATCCTACCCTTTCTGCTTTTGTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR CCA 90 bp | ATGACGTCAGCACATTTCCTTACAAAAGCAGAAAGGGTAGGATGTGGCACAAGGAATGAACACAAACGCTaGCAGGAGCATCAGCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: MTSAHFLTKAERVGCGTRNEHKR*QEHQQA Trigger: GGCCTGCTGATGCTCCTGCCAGCGTTTGTGTTCATT...CCTTGTGCCACATCCTACCCTTTCTGCTTTTGTAAGGAAATGTGCTGACGTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR GCA 90 bp | GAAAGGGTAGGATGTGGCACAAGGTGCAAAGTCTCACAACACAGGGAAAATATAGGTACTGTCCCTCAGTaGTGGCAAAGGTGTAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: ERVGCGTRCKVSQHRENIGTVPQ*WQRCSS Trigger: GGAACTACACCTTTGCCAGCACTGAGGGACAGTACC...TATATTTTCCCTGTGTTGTGAGACTTTGCACCTTGTGCCACATCCTACCCTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR GCA 90 bp | AAGGGTAGGATGTGGCACAAGGTGCAAAGTCTCACAACACAGGGAAAATATACAGGTACTGTCCCTCAGTaGTGGCAAAGGTGTAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: KGRMWHKVQSLTTQGKYTGTVPQ*WQRCSS Trigger: GGAACTACACCTTTGCCAGCACTGAGGGACAGTACC...TGTATATTTTCCCTGTGTTGTGAGACTTTGCACCTTGTGCCACATCCTACCCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR CCA 90 bp | GCAGAAAGGGTAGGATGTGGCACAAGGTGCAAAGTCTCACAACACAGGGAAAATACTGTCCCTCAGTGCTaGCAAAGGTGTAGTTCCATA | + |
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Preference number: 4 (lower is better) Translates to: AERVGCGTRCKVSQHRENTVPQC*QRCSSI Trigger: TATGGAACTACACCTTTGCCAGCACTGAGGGACAGT...ATTTTCCCTGTGTTGTGAGACTTTGCACCTTGTGCCACATCCTACCCTTTCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR GCA 90 bp | CTTAAGTCTGTAAAATCCCTTCGGAGAGAGTGCAGTTTGCTGCCTTGTTTGTTTGGTACTGTCCCTCAGTaGTGGCAAAGGTGTAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: LKSVKSLRRECSLLPCLFGTVPQ*WQRCSS Trigger: GGAACTACACCTTTGCCAGCACTGAGGGACAGTACC...AAACAAACAAGGCAGCAAACTGCACTCTCTCCGAAGGGATTTTACAGACTTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR CCA 90 bp | CTTACAAAAGCAGAAAGGGTAGGATGTGGCACAAGGTGCAAAGTCTCACAACACACTGTCCCTCAGTGCTaGCAAAGGTGTAGTTCCATA | + |
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Preference number: 4 (lower is better) Translates to: LTKAERVGCGTRCKVSQHTVPQC*QRCSSI Trigger: TATGGAACTACACCTTTGCCAGCACTGAGGGACAGT...GTGTTGTGAGACTTTGCACCTTGTGCCACATCCTACCCTTTCTGCTTTTGTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR CAA 72 bp | TGGAGCACCCAGCAGAAAGAAAGATATCTAGCTGATTaGAGAGCCTCGAGGGATAGCATAGCCATGGTTATC | + |
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Preference number: 4 (lower is better) Translates to: WSTQQKERYLAD*RASRDSIAMVI Trigger: GATAACCATGGCTATGCTATCCCTCGAGGCTCTCAAATCAGCTAGATATCTTTCTTTCTGCTGGGTGCTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR CCA 90 bp | GATGTGGCACAAGGTGCAAAGTCTCACAACACAGGGAAAATATACAAATTACAGAATGAACACAAACGCTaGCAGGAGCATCAGCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: DVAQGAKSHNTGKIYKLQNEHKR*QEHQQA Trigger: GGCCTGCTGATGCTCCTGCCAGCGTTTGTGTTCATT...CTGTAATTTGTATATTTTCCCTGTGTTGTGAGACTTTGCACCTTGTGCCACATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR CAA 72 bp | GTTAGGAAGAAGTCCTCTCTACGTGACTCCGATAAATaGCCTGATGAGAGAGGGTGTCACTTCAGACGTAAA | + |
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Preference number: 4 (lower is better) Translates to: VRKKSSLRDSDK*PDERGCHFRRK Trigger: TTTACGTCTGAAGTGACACCCTCTCTCATCAGGCAATTTATCGGAGTCACGTAGAGAGGACTTCTTCCTAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR TCA 90 bp | CTTAAGTCTGTAAAATCCCTTCGGAGAGAGTGCAGTTTGCTGCCTTGTTTGTTTTTCTGCCAAACCCAGTaGTGCCACAATGACACAGTA | + |
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Preference number: 4 (lower is better) Translates to: LKSVKSLRRECSLLPCLFFCQTQ*CHNDTV Trigger: TACTGTGTCATTGTGGCATCACTGGGTTTGGCAGAA...AAACAAACAAGGCAGCAAACTGCACTCTCTCCGAAGGGATTTTACAGACTTAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR GCA 90 bp | GCACATTTCCTTACAAAAGCAGAAAGGGTAGGATGTGGCACAAGGTGCAAAGTCCAAGATGAATTCAACTaGGGCAAAAGCCAAGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: AHFLTKAERVGCGTRCKVQDEFN*GKSQED Trigger: ATCCTCTTGGCTTTTGCCGCAGTTGAATTCATCTTG...GACTTTGCACCTTGTGCCACATCCTACCCTTTCTGCTTTTGTAAGGAAATGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR CCA 90 bp | CTTAAGTCTGTAAAATCCCTTCGGAGAGAGTGCAGTTTGCTGCCTTGTTTGTTTACTGTCCCTCAGTGCTaGCAAAGGTGTAGTTCCATA | + |
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Preference number: 4 (lower is better) Translates to: LKSVKSLRRECSLLPCLFTVPQC*QRCSSI Trigger: TATGGAACTACACCTTTGCCAGCACTGAGGGACAGT...AAACAAACAAGGCAGCAAACTGCACTCTCTCCGAAGGGATTTTACAGACTTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR CAA 72 bp | ACCACATGTAGGCACCTGTGGAACCAGAAGAGAATATaGGATCCACTGACACTGGAGTTACAGACAGTTATA | + |
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Preference number: 4 (lower is better) Translates to: TTCRHLWNQKRI*DPLTLELQTVI Trigger: TATAACTGTCTGTAACTCCAGTGTCAGTGGATCCAATATTCTCTTCTGGTTCCACAGGTGCCTACATGTGGT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR GCA 90 bp | GTGCAAAGTCTCACAACACAGGGAAAATATACAAATTACAGTGAAATACAGGAACTCCATGGGCATCGCTaGACTTTGGTCCTTCTGCCA | + |
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Preference number: 4 (lower is better) Translates to: VQSLTTQGKYTNYSEIQELHGHR*TLVLLP Trigger: TGGCAGAAGGACCAAAGTGCAGCGATGCCCATGGAG...TTCCTGTATTTCACTGTAATTTGTATATTTTCCCTGTGTTGTGAGACTTTGCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR CCA 90 bp | ACAAGGTGCAAAGTCTCACAACACAGGGAAAATATACAAATTACAGTGAAATACGGCATCGCTGCACTTTaGTCCTTCTGCCAAACCCAG | + |
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Preference number: 4 (lower is better) Translates to: TRCKVSQHRENIQITVKYGIAAL*SFCQTQ Trigger: CTGGGTTTGGCAGAAGGACCAAAGTGCAGCGATGCC...GTATTTCACTGTAATTTGTATATTTTCCCTGTGTTGTGAGACTTTGCACCTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| 3UTR CAA 72 bp | ACCAAGAGAGAAAAACATACTACCTTACCCAGGACTTaGATAACTGGAGCACCCAGCAGAAAGAAAGATATC | + |
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Preference number: 4 (lower is better) Translates to: TKREKHTTLPRT*ITGAPSRKKDI Trigger: GATATCTTTCTTTCTGCTGGGTGCTCCAGTTATCAAAGTCCTGGGTAAGGTAGTATGTTTTTCTCTCTTGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR GCA 90 bp | TTTATCTCAGCTATGCTGAGAACAGTCCTTAAGTCTGTAAAATCCCTTCGGAGACAAGATGAATTCAACTaGGGCAAAAGCCAAGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: FISAMLRTVLKSVKSLRRQDEFN*GKSQED Trigger: ATCCTCTTGGCTTTTGCCGCAGTTGAATTCATCTTG...TCTCCGAAGGGATTTTACAGACTTAAGGACTGTTCTCAGCATAGCTGAGATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR TCA 90 bp | GTGCAAAGTCTCACAACACAGGGAAAATATACAAATTACAGTGAAATACAGGAATTCTGCCAAACCCAGTaGTGCCACAATGACACAGTA | + |
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Preference number: 4 (lower is better) Translates to: VQSLTTQGKYTNYSEIQEFCQTQ*CHNDTV Trigger: TACTGTGTCATTGTGGCATCACTGGGTTTGGCAGAA...TTCCTGTATTTCACTGTAATTTGTATATTTTCCCTGTGTTGTGAGACTTTGCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR GCA 90 bp | AGGGAAAATATACAAATTACAGTGAAATACAGGAAGCACGCCCTTCTGTCTTGTCAAGATGAATTCAACTaGGGCAAAAGCCAAGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: RENIQITVKYRKHALLSCQDEFN*GKSQED Trigger: ATCCTCTTGGCTTTTGCCGCAGTTGAATTCATCTTG...ACAAGACAGAAGGGCGTGCTTCCTGTATTTCACTGTAATTTGTATATTTTCCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS CCA 90 bp | GCAACCACAGCAGTCCTCTTCATCCATCCCAATGAACACAAACGCTaGCAGGAGCATCAGCAGGCCTCCGCCTACAATGCCGGCAAAATA | + |
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Preference number: 5 (lower is better) Translates to: ATTAVLFIHPNEHKR*QEHQQASAYNAGKI Trigger: TATTTTGCCGGCATTGTAGGCGGAGGCCTGCTGATGCTCCTGCCAGCGTTTGTGTTCATTGGGATGGATGAAGAGGACTGCTGTGGTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196506.2 ENSMUST00000196979.5 |
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| CDS TCA 90 bp | CATCGCTGCACTTTGGTCCTTCTGCCAAACCCAGTGATGCCACAATaGCACAGTAAGCAGATCCCACGATTCCAATCAGAGCAGCCAGTA | + |
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Preference number: 5 (lower is better) Translates to: HRCTLVLLPNPVMPQ*HSKQIPRFQSEQPV Trigger: TACTGGCTGCTCTGATTGGAATCGTGGGATCTGCTTACTGTGTCATTGTGGCATCACTGGGTTTGGCAGAAGGACCAAAGTGCAGCGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196506.2 ENSMUST00000196979.5 |
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| CDS TCA 90 bp | TACTCCATGGGCATCGCTGCACTTTGGTCCTTCTGCCAAACCCAGTaGTGCCACAATGACACAGTAAGCAGATCCCACGATTCCAATCAG | + |
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Preference number: 5 (lower is better) Translates to: YSMGIAALWSFCQTQ*CHNDTVSRSHDSNQ Trigger: CTGATTGGAATCGTGGGATCTGCTTACTGTGTCATTGTGGCATCACTGGGTTTGGCAGAAGGACCAAAGTGCAGCGATGCCCATGGAGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196506.2 ENSMUST00000196979.5 |
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| CDS-3UTR CAA 90 bp | AGGGTAGGATGTGGCACAAGGTGCAAAGTCTCACAACACAGGGAAAATATACAAGGGCATCGCTGCACTTaGGTCCTTCTGCCAAACCCA | + |
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Preference number: 5 (lower is better) Translates to: RVGCGTRCKVSQHRENIQGHRCT*VLLPNP Trigger: TGGGTTTGGCAGAAGGACCAAAGTGCAGCGATGCCC...TTGTATATTTTCCCTGTGTTGTGAGACTTTGCACCTTGTGCCACATCCTACCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS-3UTR CAA 90 bp | GAGTTTATCTCAGCTATGCTGAGAACAGTCCTTAAGTCTGTAAAATCCCTTCGGGGGCATCGCTGCACTTaGGTCCTTCTGCCAAACCCA | + |
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Preference number: 5 (lower is better) Translates to: EFISAMLRTVLKSVKSLRGHRCT*VLLPNP Trigger: TGGGTTTGGCAGAAGGACCAAAGTGCAGCGATGCCC...CCGAAGGGATTTTACAGACTTAAGGACTGTTCTCAGCATAGCTGAGATAAACTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196979.5 |
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| CDS TCA 72 bp | CGCAGCAACCACAGCAGTCCTCTTCATCCATCCCAATaGACACAAACGCTGGCAGGAGCATCAGCAGGCCTC | + |
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Preference number: 6 (lower is better) Translates to: RSNHSSPLHPSQ*TQTLAGASAGL Trigger: GAGGCCTGCTGATGCTCCTGCCAGCGTTTGTGTTCATTGGGATGGATGAAGAGGACTGCTGTGGTTGCTGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196506.2 ENSMUST00000196979.5 |
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| CDS CCA 72 bp | GCAGTCCTCTTCATCCATCCCAATGAACACAAACGCTaGCAGGAGCATCAGCAGGCCTCCGCCTACAATGCC | + |
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Preference number: 6 (lower is better) Translates to: AVLFIHPNEHKR*QEHQQASAYNA Trigger: GGCATTGTAGGCGGAGGCCTGCTGATGCTCCTGCCAGCGTTTGTGTTCATTGGGATGGATGAAGAGGACTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196506.2 ENSMUST00000196979.5 |
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| CDS GCA 72 bp | TGGCAAAGGTGTAGTTCCATACTCCATGGGCATCGCTaGACTTTGGTCCTTCTGCCAAACCCAGTGATGCCA | + |
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Preference number: 6 (lower is better) Translates to: WQRCSSILHGHR*TLVLLPNPVMP Trigger: TGGCATCACTGGGTTTGGCAGAAGGACCAAAGTGCAGCGATGCCCATGGAGTATGGAACTACACCTTTGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196506.2 ENSMUST00000196979.5 |
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| CDS CCA 72 bp | ACAATGCCGGCAAAATACCACACGAAACGGCTGAGGTaGTCCTCCGTAGCATACTTTGTCTCCCCATTAGGA | + |
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Preference number: 6 (lower is better) Translates to: TMPAKYHTKRLR*SSVAYFVSPLG Trigger: TCCTAATGGGGAGACAAAGTATGCTACGGAGGACCACCTCAGCCGTTTCGTGTGGTATTTTGCCGGCATTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196506.2 ENSMUST00000196979.5 |
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| CDS TCA 72 bp | ACTTTGGTCCTTCTGCCAAACCCAGTGATGCCACAATaGCACAGTAAGCAGATCCCACGATTCCAATCAGAG | + |
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Preference number: 6 (lower is better) Translates to: TLVLLPNPVMPQ*HSKQIPRFQSE Trigger: CTCTGATTGGAATCGTGGGATCTGCTTACTGTGTCATTGTGGCATCACTGGGTTTGGCAGAAGGACCAAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029376.13 ENSMUST00000171384.8 ENSMUST00000196506.2 ENSMUST00000196979.5 |
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