Pregenerated sensors for TM2D1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028563Ensembl transcript IDs: ENSMUST00000030292.12, ENSMUST00000102793.11, ENSMUST00000107051.10, ENSMUST00000125034.2, ENSMUST00000143116.2
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGAGGCTCAAATCTGTTTATCTTTTTAAACACTTATGGGTACAGCTaGGTTTTTCTAAATGTTTCATTAGTAATGCTGAGTCTTGTAAGC | + |
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Preference number: 1 (lower is better) Translates to: GGSNLFIFLNTYGYS*VFLNVSLVMLSLVS Trigger: GCTTACAAGACTCAGCATTACTAATGAAACATTTAGAAAAACCCAGCTGTACCCATAAGTGTTTAAAAAGATAAACAGATTTGAGCCTCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000125034.2 |
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| 3UTR-3UTR TCA 90 bp | GGAAAAGAAAAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGCACACACAGGGCTCTTaGTTGAAATCAGGGAGGCTC | + |
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Preference number: 2 (lower is better) Translates to: GKEKSGIPHTGLLIEIREHTQGS*LKSGRL Trigger: GAGCCTCCCTGATTTCAATCAAGAGCCCTGTGTGTG...CTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTTTTCTTTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000107051.10 ENSMUST00000125034.2 ENSMUST00000143116.2 |
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| 3UTR-3UTR TCA 90 bp | TTGAAATCAGGGAGGCTCAAATCTGTTTATCTTTTTAAACACTTATGGGTACAGCACACACAGGGCTCTTaGTTGAAATCAGGGAGGCTC | + |
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Preference number: 2 (lower is better) Translates to: LKSGRLKSVYLFKHLWVQHTQGS*LKSGRL Trigger: GAGCCTCCCTGATTTCAATCAAGAGCCCTGTGTGTG...CTGTACCCATAAGTGTTTAAAAAGATAAACAGATTTGAGCCTCCCTGATTTCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000125034.2 |
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| 3UTR-3UTR TCA 90 bp | GGAAAAGAAAAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGGTAACTACTTCCATCTaGAGGTCCAACAATCTGCAT | + |
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Preference number: 2 (lower is better) Translates to: GKEKSGIPHTGLLIEIREVTTSI*RSNNLH Trigger: ATGCAGATTGTTGGACCTTCAGATGGAAGTAGTTAC...CTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTTTTCTTTTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000125034.2 |
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| 3UTR-3UTR CCA 90 bp | GGAAAAGAAAAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGAGGAAAAGAAAAATCTaGAATTCCACACACAGGGCT | + |
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Preference number: 2 (lower is better) Translates to: GKEKSGIPHTGLLIEIRERKRKI*NSTHRA Trigger: AGCCCTGTGTGTGGAATTCCAGATTTTTCTTTTCCT...CTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTTTTCTTTTCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 5 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000107051.10 ENSMUST00000125034.2 ENSMUST00000143116.2 |
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| 3UTR-3UTR TCA 90 bp | GGAAAAGAAAAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGTCAACAAATCAAGGTTaGGCACATGTCAAAACATCA | + |
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Preference number: 2 (lower is better) Translates to: GKEKSGIPHTGLLIEIRESTNQG*AHVKTS Trigger: TGATGTTTTGACATGTGCTCAACCTTGATTTGTTGA...CTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTTTTCTTTTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000107051.10 ENSMUST00000125034.2 |
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| 3UTR-3UTR CCA 90 bp | GGAAAAGAAAAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGACTTATGGGTACAGCTaGGTTTTTCTAAATGTTTCA | + |
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Preference number: 2 (lower is better) Translates to: GKEKSGIPHTGLLIEIRETYGYS*VFLNVS Trigger: TGAAACATTTAGAAAAACCCAGCTGTACCCATAAGT...CTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTTTTCTTTTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000125034.2 |
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| 3UTR-3UTR CAA 90 bp | GGAAAAGAAAAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGCCACACACAGGGCTCTaGATTGAAATCAGGGAGGCT | + |
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Preference number: 3 (lower is better) Translates to: GKEKSGIPHTGLLIEIREPHTGL*IEIREA Trigger: AGCCTCCCTGATTTCAATCAAGAGCCCTGTGTGTGG...CTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTTTTCTTTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000107051.10 ENSMUST00000125034.2 ENSMUST00000143116.2 |
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| 3UTR-3UTR CAA 90 bp | GGAAAAGAAAAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGATCAACAAATCAAGGTaGAGCACATGTCAAAACATC | + |
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Preference number: 3 (lower is better) Translates to: GKEKSGIPHTGLLIEIREINKSR*STCQNI Trigger: GATGTTTTGACATGTGCTCAACCTTGATTTGTTGAT...CTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTTTTCTTTTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000107051.10 ENSMUST00000125034.2 |
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| CDS-3UTR GCA 90 bp | AAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGGCTCAAATCTCACGAGCCACAGGGTaGGGAGAAGGCCCGGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: KSGIPHTGLLIEIREAQISRATG*GEGPEA Trigger: GGCCTCCGGGCCTTCTCCGCACCCTGTGGCTCGTGA...GATTTGAGCCTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000143116.2 |
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| CDS-3UTR GCA 90 bp | GGAAAAGAAAAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGTCACGAGCCACAGGGTaGGGAGAAGGCCCGGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: GKEKSGIPHTGLLIEIRESRATG*GEGPEA Trigger: GGCCTCCGGGCCTTCTCCGCACCCTGTGGCTCGTGA...CTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTTTTCTTTTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000143116.2 |
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| CDS-3UTR TCA 90 bp | AAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGGCTCAAATCGGCAAGATATGGGCTTaGGAAAACCGACTTCACTTC | + |
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Preference number: 4 (lower is better) Translates to: KSGIPHTGLLIEIREAQIGKIWA*ENRLHF Trigger: GAAGTGAAGTCGGTTTTCTCAAGCCCATATCTTGCC...GATTTGAGCCTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000107051.10 ENSMUST00000125034.2 |
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| CDS-3UTR GCA 90 bp | AAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGGCTCAAATCGAGGTAAAATCGATCTaGTCCCAGCCATCCCAAAAA | + |
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Preference number: 4 (lower is better) Translates to: KSGIPHTGLLIEIREAQIEVKSI*SQPSQK Trigger: TTTTTGGGATGGCTGGGAGCAGATCGATTTTACCTC...GATTTGAGCCTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000107051.10 |
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| CDS-3UTR TCA 90 bp | AAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGGCTCAAATCGTAACTACTTCCATCTaGAGGTCCAACAATCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: KSGIPHTGLLIEIREAQIVTTSI*RSNNLH Trigger: ATGCAGATTGTTGGACCTTCAGATGGAAGTAGTTAC...GATTTGAGCCTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000107051.10 ENSMUST00000143116.2 |
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| CDS-3UTR GCA 90 bp | GGAAAAGAAAAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGGAGGTAAAATCGATCTaGTCCCAGCCATCCCAAAAA | + |
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Preference number: 4 (lower is better) Translates to: GKEKSGIPHTGLLIEIREEVKSI*SQPSQK Trigger: TTTTTGGGATGGCTGGGAGCAGATCGATTTTACCTC...CTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTTTTCTTTTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000107051.10 |
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| CDS-3UTR CCA 90 bp | AAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGGCTCAAATCAGTTATTTTGGGTGCTaGAAAACATTGAACTCCCGG | + |
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Preference number: 4 (lower is better) Translates to: KSGIPHTGLLIEIREAQISYFGC*KTLNSR Trigger: CCGGGAGTTCAATGTTTTCCAGCACCCAAAATAACT...GATTTGAGCCTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107051.10 |
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| CDS-3UTR GCA 90 bp | AAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGGCTCAAATCACAAGTTATTTTGGGTaGTGGAAAACATTGAACTCC | + |
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Preference number: 4 (lower is better) Translates to: KSGIPHTGLLIEIREAQITSYFG*WKTLNS Trigger: GGAGTTCAATGTTTTCCAGCACCCAAAATAACTTGT...GATTTGAGCCTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107051.10 |
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| CDS-3UTR CCA 90 bp | AAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGGCTCAAATCAGTTATTTTGGGTGCTaGAAAACATTGAACATGAGC | + |
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Preference number: 4 (lower is better) Translates to: KSGIPHTGLLIEIREAQISYFGC*KTLNMS Trigger: GCTCATGTTCAATGTTTTCCAGCACCCAAAATAACT...GATTTGAGCCTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102793.11 |
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| CDS-3UTR TCA 90 bp | TTGAAATCAGGGAGGCTCAAATCTGTTTATCTTTTTAAACACTTATGGGTACAGGGCAAGATATGGGCTTaGGAAAACCGACTTCACTTC | + |
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Preference number: 4 (lower is better) Translates to: LKSGRLKSVYLFKHLWVQGKIWA*ENRLHF Trigger: GAAGTGAAGTCGGTTTTCTCAAGCCCATATCTTGCC...CTGTACCCATAAGTGTTTAAAAAGATAAACAGATTTGAGCCTCCCTGATTTCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000125034.2 |
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| CDS-3UTR GCA 90 bp | GGAAAAGAAAAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGACAAGTTATTTTGGGTaGATGAGCTGTGTAGTTTGT | + |
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Preference number: 4 (lower is better) Translates to: GKEKSGIPHTGLLIEIRETSYFG*MSCVVC Trigger: ACAAACTACACAGCTCATGCACCCAAAATAACTTGT...CTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTTTTCTTTTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030292.12 |
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| CDS-3UTR GCA 90 bp | AAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGGCTCAAATCACAAGTTATTTTGGGTaGTGGAAAACATTGAACATG | + |
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Preference number: 4 (lower is better) Translates to: KSGIPHTGLLIEIREAQITSYFG*WKTLNM Trigger: CATGTTCAATGTTTTCCAGCACCCAAAATAACTTGT...GATTTGAGCCTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102793.11 |
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| CDS-3UTR CCA 90 bp | AAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGGCTCAAATCGTTTGTACAATTAACTaGTTCTTGCGTAGCATCATT | + |
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Preference number: 4 (lower is better) Translates to: KSGIPHTGLLIEIREAQIVCTIN*FLRSII Trigger: AATGATGCTACGCAAGAACCAGTTAATTGTACAAAC...GATTTGAGCCTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000143116.2 |
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| CDS-3UTR CAA 90 bp | AAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGGCTCAAATCCTGAGGTCCTCACACTaGGGTGTCTCCTCGCCCCCG | + |
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Preference number: 5 (lower is better) Translates to: KSGIPHTGLLIEIREAQILRSSH*GVSSPP Trigger: CGGGGGCGAGGAGACACCCAAGTGTGAGGACCTCAG...GATTTGAGCCTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000143116.2 |
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| CDS-3UTR CAA 90 bp | AAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGGCTCAAATCCGGCAAGATATGGGCTaGAGAAAACCGACTTCACTT | + |
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Preference number: 5 (lower is better) Translates to: KSGIPHTGLLIEIREAQIRQDMG*RKPTSL Trigger: AAGTGAAGTCGGTTTTCTCAAGCCCATATCTTGCCG...GATTTGAGCCTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000107051.10 ENSMUST00000125034.2 |
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| CDS-3UTR CAA 90 bp | GGAAAAGAAAAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGCGGCAAGATATGGGCTaGAGAAAACCGACTTCACTT | + |
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Preference number: 5 (lower is better) Translates to: GKEKSGIPHTGLLIEIRERQDMG*RKPTSL Trigger: AAGTGAAGTCGGTTTTCTCAAGCCCATATCTTGCCG...CTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTTTTCTTTTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000107051.10 ENSMUST00000125034.2 |
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| CDS-3UTR CAA 90 bp | AAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGGCTCAAATCTTCTTTACAAATATATaGTCCCACCCTGAGGTCCTC | + |
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Preference number: 5 (lower is better) Translates to: KSGIPHTGLLIEIREAQIFFTNI*SHPEVL Trigger: GAGGACCTCAGGGTGGGACAATATATTTGTAAAGAA...GATTTGAGCCTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000143116.2 |
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| CDS-3UTR CAA 90 bp | GGAAAAGAAAAATCTGGAATTCCACACACAGGGCTCTTGATTGAAATCAGGGAGTTCTTTACAAATATATaGTCCCACCCTGAGGTCCTC | + |
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Preference number: 5 (lower is better) Translates to: GKEKSGIPHTGLLIEIREFFTNI*SHPEVL Trigger: GAGGACCTCAGGGTGGGACAATATATTTGTAAAGAA...CTCCCTGATTTCAATCAAGAGCCCTGTGTGTGGAATTCCAGATTTTTCTTTTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000143116.2 |
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| CDS CAA 72 bp | TTACAAATATATTGTCCCACCCTGAGGTCCTCACACTaGGGTGTCTCCTCGCCCCCGACAGCGCCAGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: LQIYCPTLRSSH*GVSSPPTAPEA Trigger: TGCCTCTGGCGCTGTCGGGGGCGAGGAGACACCCAAGTGTGAGGACCTCAGGGTGGGACAATATATTTGTAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000030292.12 ENSMUST00000102793.11 ENSMUST00000143116.2 |
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| CDS CCA 72 bp | TTTGGGTGCATGAGCTGTGTAGTTTGTACAATTAACTaGTTCTTGCGTAGCATCATTTATTTTTGGTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: FGCMSCVVCTIN*FLRSIIYFWFF Trigger: AAAGAACCAAAAATAAATGATGCTACGCAAGAACCAGTTAATTGTACAAACTACACAGCTCATGCACCCAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030292.12 |
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| CDS CCA 72 bp | ATTACCACTCAAATCCTTACAAGTTATTTTGGGTGCTaGAAAACATTGAACATGAGCTGTGTAGTTTGTACA | + |
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Preference number: 6 (lower is better) Translates to: ITTQILTSYFGC*KTLNMSCVVCT Trigger: TGTACAAACTACACAGCTCATGTTCAATGTTTTCCAGCACCCAAAATAACTTGTAAGGATTTGAGTGGTAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102793.11 |
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