Pregenerated sensors for TLX3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040610Ensembl transcript IDs: ENSMUST00000037746.8
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGCCGCGAGGACCTGGGCCCAGCCCCTCTCCGCGGCCGGCGCTGTaGGGCGCGCCCCAAGACCCACGCGAGTCGGGCCGCCCTACCCTT | + |
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Preference number: 1 (lower is better) Translates to: QPRGPGPSPSPRPAL*GAPQDPRESGRPTL Trigger: AAGGGTAGGGCGGCCCGACTCGCGTGGGTCTTGGGGCGCGCCGCACAGCGCCGGCCGCGGAGAGGGGCTGGGCCCAGGTCCTCGCGGCTG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR GCA 90 bp | CAAAGTATAATACAGGCGCCCAGCCCGGGGGTGCGGGTGCGGGGCGGAGTAACGCGCTCCTCCGCCGTCTaGCGCCGCCACTTGGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: QSIIQAPSPGVRVRGGVTRSSAV*RRHLVL Trigger: GAGGACCAAGTGGCGGCGGCAGACGGCGGAGGAGCG...CGTTACTCCGCCCCGCACCCGCACCCCCGGGCTGGGCGCCTGTATTATACTTTG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR CCA 90 bp | GGTGCGGGGCGGAGTAACGTAAGGCGCTTCTTTGTCAGGCCCGGGCCTGGGGCGGCGGGCGCGCTGTCCTaGTCCGGGCTGTTGAGGATT | + |
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Preference number: 4 (lower is better) Translates to: GAGRSNVRRFFVRPGPGAAGALS*SGLLRI Trigger: AATCCTCAACAGCCCGGACCAGGACAGCGCGCCCGC...CGCCCCAGGCCCGGGCCTGACAAAGAAGCGCCTTACGTTACTCCGCCCCGCACC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR GCA 90 bp | CAAAGTATAATACAGGCGCCCAGCCCGGGGGTGCGGGTGCGGGGCGGAGTAACGAAGCTGATGGGCTCGTaGGGGTGTGGGGTCTGCGCG | + |
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Preference number: 4 (lower is better) Translates to: QSIIQAPSPGVRVRGGVTKLMGS*GCGVCA Trigger: CGCGCAGACCCCACACCCGCACGAGCCCATCAGCTT...CGTTACTCCGCCCCGCACCCGCACCCCCGGGCTGGGCGCCTGTATTATACTTTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR GCA 90 bp | GGTGCGGGGCGGAGTAACGTAAGGCGCTTCTTTGTCAGGCCCGGGCCTGGGGCGCCCGGGAAAAGGACGTaGGCGGCTTCTTACGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: GAGRSNVRRFFVRPGPGAPGKRT*AASYAW Trigger: CCAAGCGTAAGAAGCCGCGCACGTCCTTTTCCCGGG...CGCCCCAGGCCCGGGCCTGACAAAGAAGCGCCTTACGTTACTCCGCCCCGCACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR TCA 90 bp | GGAGAGGCGTGCACCCAGCCTAAACGCTGGGTGCCCCCGGCCCCACACGCTTCCGGGCCAAGCTTAGGTTaGCACTGTAAGATCCCGCGT | + |
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Preference number: 4 (lower is better) Translates to: GEACTQPKRWVPPAPHASGPSLG*HCKIPR Trigger: ACGCGGGATCTTACAGTGTCAACCTAAGCTTGGCCC...GGAAGCGTGTGGGGCCGGGGGCACCCAGCGTTTAGGCTGGGTGCACGCCTCTCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR TCA 90 bp | CAAAGTATAATACAGGCGCCCAGCCCGGGGGTGCGGGTGCGGGGCGGAGTAACGGCGCGTCCGTCATTTTaGGGGACTTTGCGAGCGCCG | + |
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Preference number: 4 (lower is better) Translates to: QSIIQAPSPGVRVRGGVTARPSF*GTLRAP Trigger: CGGCGCTCGCAAAGTCCCTCAAAATGACGGACGCGC...CGTTACTCCGCCCCGCACCCGCACCCCCGGGCTGGGCGCCTGTATTATACTTTG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR GCA 90 bp | AAGACCCACGCGAGTCGGGCCGCCCTACCCTTCTCGGCCCAGCTTCCCTTCCCATGGAAGGCGTCGTGTTaGAGCTGTAGCATGAGCCGG | + |
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Preference number: 4 (lower is better) Translates to: KTHASRAALPFSAQLPFPWKASC*SCSMSR Trigger: CCGGCTCATGCTACAGCTGCAACACGACGCCTTCCA...TGGGAAGGGAAGCTGGGCCGAGAAGGGTAGGGCGGCCCGACTCGCGTGGGTCTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR GCA 90 bp | AAGACCCACGCGAGTCGGGCCGCCCTACCCTTCTCGGCCCAGCTTCCCTTCCCATCCAGCTCACAGATCTaGACCCGGGAAAAGGACGTG | + |
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Preference number: 4 (lower is better) Translates to: KTHASRAALPFSAQLPFPSSSQI*TREKDV Trigger: CACGTCCTTTTCCCGGGTGCAGATCTGTGAGCTGGA...TGGGAAGGGAAGCTGGGCCGAGAAGGGTAGGGCGGCCCGACTCGCGTGGGTCTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR GCA 90 bp | ACAAAGTATAATACAGGCGCCCAGCCCGGGGGTGCGGGTGCGGGGCGGAGTAACCATTTTGAGGGACTTTaGGAGCGCCGCCCTCTCGGC | + |
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Preference number: 4 (lower is better) Translates to: TKYNTGAQPGGAGAGRSNHFEGL*ERRPLG Trigger: GCCGAGAGGGCGGCGCTCGCAAAGTCCCTCAAAATG...GTTACTCCGCCCCGCACCCGCACCCCCGGGCTGGGCGCCTGTATTATACTTTGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR CCA 90 bp | AATACAGGCGCCCAGCCCGGGGGTGCGGGTGCGGGGCGGAGTAACGTAAGGCGCAGGTACTTTTGGCGATaGAAGCGCTTTTCCAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: NTGAQPGGAGAGRSNVRRRYFWR*KRFSSS Trigger: TGAGCTGGAAAAGCGCTTCCATCGCCAAAAGTACCT...GCGCCTTACGTTACTCCGCCCCGCACCCGCACCCCCGGGCTGGGCGCCTGTATT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR TCA 90 bp | ACAAAGTATAATACAGGCGCCCAGCCCGGGGGTGCGGGTGCGGGGCGGAGTAACGCTGGATGGAATCGTTaGGGCTCTTCTGGAAGGCGT | + |
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Preference number: 4 (lower is better) Translates to: TKYNTGAQPGGAGAGRSNAGWNR*GSSGRR Trigger: ACGCCTTCCAGAAGAGCCTCAACGATTCCATCCAGC...GTTACTCCGCCCCGCACCCGCACCCCCGGGCTGGGCGCCTGTATTATACTTTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR TCA 90 bp | ACACGTTTGGGCAAAAGTACAAAGTATAATACAGGCGCCCAGCCCGGGGGTGCGCCATCCAGGGGAAATTaGGGCCGCCTAGGCTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: TRLGKSTKYNTGAQPGGAPSRGN*GRLGWR Trigger: TCTCCAGCCTAGGCGGCCTCAATTTCCCCTGGATGG...CGCACCCCCGGGCTGGGCGCCTGTATTATACTTTGTACTTTTGCCCAAACGTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR CCA 90 bp | ATAAAAGGAACGGAAAAGGAGAGGCGTGCACCCAGCCTAAACGCTGGGTGCCCCTCGTTGAGGCTCTTCTaGAAGGCGTCGTGTTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: IKGTEKERRAPSLNAGCPSLRLF*KASCCS Trigger: GCTGCAACACGACGCCTTCCAGAAGAGCCTCAACGA...GGGGCACCCAGCGTTTAGGCTGGGTGCACGCCTCTCCTTTTCCGTTCCTTTTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR TCA 90 bp | TTATTTACACGTTTGGGCAAAAGTACAAAGTATAATACAGGCGCCCAGCCCGGGGTTGCAGCTGTAGCATaGGCCGGCTCGCCTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: LFTRLGKSTKYNTGAQPGVAAVA*AGSPAA Trigger: GGCAGCAGGCGAGCCGGCTCATGCTACAGCTGCAAC...CCCGGGCTGGGCGCCTGTATTATACTTTGTACTTTTGCCCAAACGTGTAAATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR GCA 90 bp | CACGTTTGGGCAAAAGTACAAAGTATAATACAGGCGCCCAGCCCGGGGGTGCGGTTACAAAGCGGCGACTaGTCTCCATCCAGGGGAAAT | + |
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Preference number: 4 (lower is better) Translates to: HVWAKVQSIIQAPSPGVRLQSGD*SPSRGN Trigger: ATTTCCCCTGGATGGAGAGCAGTCGCCGCTTTGTAA...CCGCACCCCCGGGCTGGGCGCCTGTATTATACTTTGTACTTTTGCCCAAACGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR CCA 90 bp | TTTACACGTTTGGGCAAAAGTACAAAGTATAATACAGGCGCCCAGCCCGGGGGTTCTGCCGCCGCCACTTaGTCCTCCGATTTTGGAACC | + |
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Preference number: 4 (lower is better) Translates to: FTRLGKSTKYNTGAQPGGSAAAT*SSDFGT Trigger: GGTTCCAAAATCGGAGGACCAAGTGGCGGCGGCAGA...ACCCCCGGGCTGGGCGCCTGTATTATACTTTGTACTTTTGCCCAAACGTGTAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR GCA 90 bp | TTTACACGTTTGGGCAAAAGTACAAAGTATAATACAGGCGCCCAGCCCGGGGGTTCCTCCTCCCAGGGCTaGAGATTCTGCAGAGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: FTRLGKSTKYNTGAQPGGSSSQG*RFCRAK Trigger: CTTTGCTCTGCAGAATCTGCAGCCCTGGGAGGAGGA...ACCCCCGGGCTGGGCGCCTGTATTATACTTTGTACTTTTGCCCAAACGTGTAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR CCA 90 bp | TTATTTACACGTTTGGGCAAAAGTACAAAGTATAATACAGGCGCCCAGCCCGGGCAGAGCGGGTCGGGCTaGATGGAATCGTTGAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: LFTRLGKSTKYNTGAQPGQSGSG*MESLRL Trigger: GAGCCTCAACGATTCCATCCAGCCCGACCCGCTCTG...CCCGGGCTGGGCGCCTGTATTATACTTTGTACTTTTGCCCAAACGTGTAAATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS TCA 90 bp | TGTGCGCTGGCACCCGGATCACGCCGGCGGGGGCCAAGCTTAGGTTaGCACTGTAAGATCCCGCGTCCTCGAAGGGCGCGCCGAGGCCCG | + |
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Preference number: 5 (lower is better) Translates to: CALAPGSRRRGPSLG*HCKIPRPRRARRGP Trigger: CGGGCCTCGGCGCGCCCTTCGAGGACGCGGGATCTTACAGTGTCAACCTAAGCTTGGCCCCCGCCGGCGTGATCCGGGTGCCAGCGCACA 70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS CCA 90 bp | TGCAGACAGAGCGGGTCGGGCTGGATGGAATCGTTGAGGCTCTTCTaGAAGGCGTCGTGTTGCAGCTGTAGCATGAGCCGGCTCGCCTGC | + |
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Preference number: 5 (lower is better) Translates to: CRQSGSGWMESLRLF*KASCCSCSMSRLAC Trigger: GCAGGCGAGCCGGCTCATGCTACAGCTGCAACACGACGCCTTCCAGAAGAGCCTCAACGATTCCATCCAGCCCGACCCGCTCTGTCTGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR CAA 90 bp | CACGTTTGGGCAAAAGTACAAAGTATAATACAGGCGCCCAGCCCGGGGGTGCGGTGCGCGTCCGTCATTTaGAGGGACTTTGCGAGCGCC | + |
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Preference number: 5 (lower is better) Translates to: HVWAKVQSIIQAPSPGVRCASVI*RDFASA Trigger: GGCGCTCGCAAAGTCCCTCAAAATGACGGACGCGCA...CCGCACCCCCGGGCTGGGCGCCTGTATTATACTTTGTACTTTTGCCCAAACGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR CAA 90 bp | ACACGTTTGGGCAAAAGTACAAAGTATAATACAGGCGCCCAGCCCGGGGGTGCGGTGACAGCGGGGACCTaGGAACTGTCCTCCTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: TRLGKSTKYNTGAQPGGAVTAGT*ELSSSQ Trigger: CTGGGAGGAGGACAGTTCCAAGGTCCCCGCTGTCAC...CGCACCCCCGGGCTGGGCGCCTGTATTATACTTTGTACTTTTGCCCAAACGTGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR CAA 90 bp | ATAAAAGGAACGGAAAAGGAGAGGCGTGCACCCAGCCTAAACGCTGGGTGCCCCGGCTGGATGGAATCGTaGAGGCTCTTCTGGAAGGCG | + |
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Preference number: 5 (lower is better) Translates to: IKGTEKERRAPSLNAGCPGWMES*RLFWKA Trigger: CGCCTTCCAGAAGAGCCTCAACGATTCCATCCAGCC...GGGGCACCCAGCGTTTAGGCTGGGTGCACGCCTCTCCTTTTCCGTTCCTTTTAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR CAA 90 bp | ATAAAAGGAACGGAAAAGGAGAGGCGTGCACCCAGCCTAAACGCTGGGTGCCCCCTTGGTCCTCCGATTTaGGAACCAGGTCTTGACCTG | + |
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Preference number: 5 (lower is better) Translates to: IKGTEKERRAPSLNAGCPLGPPI*EPGLDL Trigger: CAGGTCAAGACCTGGTTCCAAAATCGGAGGACCAAG...GGGGCACCCAGCGTTTAGGCTGGGTGCACGCCTCTCCTTTTCCGTTCCTTTTAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS-3UTR CAA 90 bp | TTATTTACACGTTTGGGCAAAAGTACAAAGTATAATACAGGCGCCCAGCCCGGGTCCATCCAGGGGAAATaGAGGCCGCCTAGGCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: LFTRLGKSTKYNTGAQPGSIQGK*RPPRLE Trigger: CTCCAGCCTAGGCGGCCTCAATTTCCCCTGGATGGA...CCCGGGCTGGGCGCCTGTATTATACTTTGTACTTTTGCCCAAACGTGTAAATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS TCA 72 bp | GCACCCGGATCACGCCGGCGGGGGCCAAGCTTAGGTTaGCACTGTAAGATCCCGCGTCCTCGAAGGGCGCGC | + |
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Preference number: 6 (lower is better) Translates to: APGSRRRGPSLG*HCKIPRPRRAR Trigger: GCGCGCCCTTCGAGGACGCGGGATCTTACAGTGTCAACCTAAGCTTGGCCCCCGCCGGCGTGATCCGGGTGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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| CDS CCA 72 bp | AGCGGGTCGGGCTGGATGGAATCGTTGAGGCTCTTCTaGAAGGCGTCGTGTTGCAGCTGTAGCATGAGCCGG | + |
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Preference number: 6 (lower is better) Translates to: SGSGWMESLRLF*KASCCSCSMSR Trigger: CCGGCTCATGCTACAGCTGCAACACGACGCCTTCCAGAAGAGCCTCAACGATTCCATCCAGCCCGACCCGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037746.8 |
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