Pregenerated sensors for TLX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025215Ensembl transcript IDs: ENSMUST00000026236.11, ENSMUST00000174617.3
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCAGAGTGAGGGCAGGATCACACAGGCTTCTGGGAAGATGTCTCTaGCTGTATCCCCAGCCCTCTTCCACCGAAGACAGGAAGTGTCCG | + |
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Preference number: 1 (lower is better) Translates to: SRVRAGSHRLLGRCL*LYPQPSSTEDRKCP Trigger: CGGACACTTCCTGTCTTCGGTGGAAGAGGGCTGGGGATACAGGCAGAGACATCTTCCCAGAAGCCTGTGTGATCCTGCCCTCACTCTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| 3UTR GCA 90 bp | ACAACAAGGGTCATTTGCTGTGATCCTGTGTGTGCACTGATGCTCTaGGATAGGCCCCTGTGTGTAGCTCTGGGTGACACCAGGAGGGAC | + |
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Preference number: 1 (lower is better) Translates to: TTRVICCDPVCALML*DRPLCVALGDTRRD Trigger: GTCCCTCCTGGTGTCACCCAGAGCTACACACAGGGGCCTATCGCAGAGCATCAGTGCACACACAGGATCACAGCAAATGACCCTTGTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| 3UTR CCA 90 bp | TTATGTGAAAGCCTGTCTGTGCATACCTGGGTGACCTGGGTGACCTaGGTGATGCTGGGATGTGTGGCTGAGGGCCTGACAGACCAAGTT | + |
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Preference number: 1 (lower is better) Translates to: LCESLSVHTWVTWVT*VMLGCVAEGLTDQV Trigger: AACTTGGTCTGTCAGGCCCTCAGCCACACATCCCAGCATCACCCAGGTCACCCAGGTCACCCAGGTATGCACAGACAGGCTTTCACATAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| 3UTR CCA 90 bp | GTGTCACAGTGTGACTATGGCCGTGTGTTTGAGGTCCGTGCTGTTTaGGTGAGTCTGAGAGTCACCCCAGACTATGCCCTACAACAAGGG | + |
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Preference number: 1 (lower is better) Translates to: VSQCDYGRVFEVRAV*VSLRVTPDYALQQG Trigger: CCCTTGTTGTAGGGCATAGTCTGGGGTGACTCTCAGACTCACCCAAACAGCACGGACCTCAAACACACGGCCATAGTCACACTGTGACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| 3UTR CCA 90 bp | TGGAGAAATGGGCTGCATTTATGTGAAAGCCTGTCTGTGCATACCTaGGTGACCTGGGTGACCTGGGTGATGCTGGGATGTGTGGCTGAG | + |
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Preference number: 1 (lower is better) Translates to: WRNGLHLCESLSVHT*VTWVTWVMLGCVAE Trigger: CTCAGCCACACATCCCAGCATCACCCAGGTCACCCAGGTCACCCAGGTATGCACAGACAGGCTTTCACATAAATGCAGCCCATTTCTCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| 3UTR-3UTR GCA 90 bp | TGGGTGACACCAGGAGGGACAGTGGTATCACCTCTGTGTGGACCTCCGGGCTCTGGGGAGTGGAGGCGGTaGTTGGGAGCCTTGCTGAGA | + |
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Preference number: 2 (lower is better) Translates to: WVTPGGTVVSPLCGPPGSGEWRR*LGALLR Trigger: TCTCAGCAAGGCTCCCAAGCACCGCCTCCACTCCCC...AGAGCCCGGAGGTCCACACAGAGGTGATACCACTGTCCCTCCTGGTGTCACCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| 3UTR-3UTR GCA 90 bp | AGAGTGAGGGCAGGATCACACAGGCTTCTGGGAAGATGTCTCTGCCTGTATCCCCCCCCATTTCCCTCCTaGGTGCAGTCAGAAAGGGTG | + |
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Preference number: 2 (lower is better) Translates to: RVRAGSHRLLGRCLCLYPPPFPS*VQSERV Trigger: CACCCTTTCTGACTGCACGCAGGAGGGAAATGGGGG...GGGATACAGGCAGAGACATCTTCCCAGAAGCCTGTGTGATCCTGCCCTCACTCT 57% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| 3UTR-3UTR GCA 90 bp | ATTCTGAACTGTTCCAGAGTGAGGGCAGGATCACACAGGCTTCTGGGAAGATGTGGGGAGTGGAGGCGGTaGTTGGGAGCCTTGCTGAGA | + |
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Preference number: 2 (lower is better) Translates to: ILNCSRVRAGSHRLLGRCGEWRR*LGALLR Trigger: TCTCAGCAAGGCTCCCAAGCACCGCCTCCACTCCCC...ACATCTTCCCAGAAGCCTGTGTGATCCTGCCCTCACTCTGGAACAGTTCAGAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| 3UTR-3UTR CCA 90 bp | CTTCCGGACCCTACTTCCTTTGGGTCTCTCTGTCCCATGTTAAAAATCAGTAAAGATCACACAGGCTTCTaGGAAGATGTCTCTGCCTGT | + |
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Preference number: 2 (lower is better) Translates to: LPDPTSFGSLCPMLKISKDHTGF*EDVSAC Trigger: ACAGGCAGAGACATCTTCCCAGAAGCCTGTGTGATC...TTTACTGATTTTTAACATGGGACAGAGAGACCCAAAGGAAGTAGGGTCCGGAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| 3UTR CCA 72 bp | CTCTTCCACCGAAGACAGGAAGTGTCCGCAGGGGAGTaGAGGCGGTGCTTGGGAGCCTTGCTGAGAAGCCCC | + |
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Preference number: 3 (lower is better) Translates to: LFHRRQEVSAGE*RRCLGALLRSP Trigger: GGGGCTTCTCAGCAAGGCTCCCAAGCACCGCCTCCACTCCCCTGCGGACACTTCCTGTCTTCGGTGGAAGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| 3UTR CCA 72 bp | AGCCTGTCTGTGCATACCTGGGTGACCTGGGTGACCTaGGTGATGCTGGGATGTGTGGCTGAGGGCCTGACA | + |
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Preference number: 3 (lower is better) Translates to: SLSVHTWVTWVT*VMLGCVAEGLT Trigger: TGTCAGGCCCTCAGCCACACATCCCAGCATCACCCAGGTCACCCAGGTCACCCAGGTATGCACAGACAGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| 3UTR CCA 72 bp | CCTCCTGCGTGCAGTCAGAAAGGGTGTCGAGAGTTCTaGTTCTCCGGAAAGTCCTCAACGGGCCTTGGGTCC | + |
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Preference number: 3 (lower is better) Translates to: PPACSQKGCREF*FSGKSSTGLGS Trigger: GGACCCAAGGCCCGTTGAGGACTTTCCGGAGAACCAGAACTCTCGACACCCTTTCTGACTGCACGCAGGAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| 3UTR GCA 72 bp | AGGGCAGGATCACACAGGCTTCTGGGAAGATGTCTCTaGCTGTATCCCCAGCCCTCTTCCACCGAAGACAGG | + |
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Preference number: 3 (lower is better) Translates to: RAGSHRLLGRCL*LYPQPSSTEDR Trigger: CCTGTCTTCGGTGGAAGAGGGCTGGGGATACAGGCAGAGACATCTTCCCAGAAGCCTGTGTGATCCTGCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| 3UTR TCA 72 bp | GACCTGGGTGACCTGGGTGATGCTGGGATGTGTGGCTaGGGGCCTGACAGACCAAGTTTAGCTGTTGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: DLGDLGDAGMCG*GPDRPSLAVVC Trigger: ACACACAACAGCTAAACTTGGTCTGTCAGGCCCTCAGCCACACATCCCAGCATCACCCAGGTCACCCAGGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| 3UTR CCA 72 bp | ACAGAGAGGTTTCCAGCTTTAGTACAGATGGCTGCCTaGGGATCCCAGAAGCCTTCCGGACCCTACTTCCTT | + |
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Preference number: 3 (lower is better) Translates to: TERFPALVQMAA*GSQKPSGPYFL Trigger: AAGGAAGTAGGGTCCGGAAGGCTTCTGGGATCCCCAGGCAGCCATCTGTACTAAAGCTGGAAACCTCTCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| 3UTR GCA 72 bp | TGCTGTTTGGGTGAGTCTGAGAGTCACCCCAGACTATaGCCTACAACAAGGGTCATTTGCTGTGATCCTGTG | + |
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Preference number: 3 (lower is better) Translates to: CCLGESESHPRL*PTTRVICCDPV Trigger: CACAGGATCACAGCAAATGACCCTTGTTGTAGGGCATAGTCTGGGGTGACTCTCAGACTCACCCAAACAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR GCA 90 bp | ACACCAGGAGGGACAGTGGTATCACCTCTGTGTGGACCTCCGGGCTCTCCTCCCCACGCACAGTGGGTCTaGAGGCAGCGGCTGGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: TPGGTVVSPLCGPPGSPPHAQWV*RQRLGQ Trigger: CTGGCCCAGCCGCTGCCTGCAGACCCACTGTGCGTG...GGGAGGAGAGCCCGGAGGTCCACACAGAGGTGATACCACTGTCCCTCCTGGTGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR CCA 90 bp | GGGCAGGATCACACAGGCTTCTGGGAAGATGTCTCTGCCTGTATCCCCAGCCCTTCCGCGTGGCCCGGGTaGAGATGGTGCGGACCCAGG | + |
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Preference number: 4 (lower is better) Translates to: GQDHTGFWEDVSACIPSPSAWPG*RWCGPR Trigger: CCTGGGTCCGCACCATCTCCACCCGGGCCACGCGGA...AGGGCTGGGGATACAGGCAGAGACATCTTCCCAGAAGCCTGTGTGATCCTGCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR CCA 90 bp | GGCCGTGTGTTTGAGGTCCGTGCTGTTTGGGTGAGTCTGAGAGTCACCCCAGACTGGCCCGGGTGGAGATaGTGCGGACCCAGGTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: GRVFEVRAVWVSLRVTPDWPGWR*CGPRCS Trigger: GGAGCACCTGGGTCCGCACCATCTCCACCCGGGCCA...GTCTGGGGTGACTCTCAGACTCACCCAAACAGCACGGACCTCAAACACACGGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR CCA 90 bp | ATGGCTGCCTGGGGATCCCAGAAGCCTTCCGGACCCTACTTCCTTTGGGTCTCTACCACCAGGACCACCTaGGCCACCCGCGCCGTAAGC | + |
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Preference number: 4 (lower is better) Translates to: MAAWGSQKPSGPYFLWVSTTRTT*ATRAVS Trigger: GCTTACGGCGCGGGTGGCCCAGGTGGTCCTGGTGGT...AGAGACCCAAAGGAAGTAGGGTCCGGAAGGCTTCTGGGATCCCCAGGCAGCCAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR GCA 90 bp | ACCTCTGTGTGGACCTCCGGGCTCTCCTCCCAGGAGAGGAACAGAGAGGTTTCCATGCGGTTCGCCTGCTaGCTCTCGGCCTCACGTTCC | + |
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Preference number: 4 (lower is better) Translates to: TSVWTSGLSSQERNREVSMRFAC*LSASRS Trigger: GGAACGTGAGGCCGAGAGGCAGCAGGCGAACCGCAT...GGAAACCTCTCTGTTCCTCTCCTGGGAGGAGAGCCCGGAGGTCCACACAGAGGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR GCA 90 bp | GGAAGTGTCCGCAGGGGAGTGGAGGCGGTGCTTGGGAGCCTTGCTGAGAAGCCCAAGAGCGAGGAGTTGTaGACGCACAGTGGGTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: GSVRRGVEAVLGSLAEKPKSEEL*THSGSA Trigger: TGCAGACCCACTGTGCGTGCACAACTCCTCGCTCTT...GGGCTTCTCAGCAAGGCTCCCAAGCACCGCCTCCACTCCCCTGCGGACACTTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| CDS-3UTR CCA 90 bp | ACACCAGGAGGGACAGTGGTATCACCTCTGTGTGGACCTCCGGGCTCTCCTCCCTGGGCCAGGCTCTTCTaGAAGGCTTCCTGCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: TPGGTVVSPLCGPPGSPPWARLF*KASCCS Trigger: GCTGCAGCAGGAAGCCTTCCAGAAGAGCCTGGCCCA...GGGAGGAGAGCCCGGAGGTCCACACAGAGGTGATACCACTGTCCCTCCTGGTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR TCA 90 bp | TGGGTGACACCAGGAGGGACAGTGGTATCACCTCTGTGTGGACCTCCGGGCTCTGCGCATCGGTCATTTTaGGCGCCTTGGCCAGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: WVTPGGTVVSPLCGPPGSAHRSF*APWPEQ Trigger: CTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGC...AGAGCCCGGAGGTCCACACAGAGGTGATACCACTGTCCCTCCTGGTGTCACCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR GCA 90 bp | AGAGTGAGGGCAGGATCACACAGGCTTCTGGGAAGATGTCTCTGCCTGTATCCCCACGCACAGTGGGTCTaGAGGCAGCGGCTGGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: RVRAGSHRLLGRCLCLYPHAQWV*RQRLGQ Trigger: CTGGCCCAGCCGCTGCCTGCAGACCCACTGTGCGTG...GGGATACAGGCAGAGACATCTTCCCAGAAGCCTGTGTGATCCTGCCCTCACTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| CDS-3UTR CCA 90 bp | GGCCGTGTGTTTGAGGTCCGTGCTGTTTGGGTGAGTCTGAGAGTCACCCCAGACGTTGTGCACGCACAGTaGGTCTGCAGGCAGCGGCTG | + |
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Preference number: 4 (lower is better) Translates to: GRVFEVRAVWVSLRVTPDVVHAQ*VCRQRL Trigger: CAGCCGCTGCCTGCAGACCCACTGTGCGTGCACAAC...GTCTGGGGTGACTCTCAGACTCACCCAAACAGCACGGACCTCAAACACACGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR GCA 90 bp | GCAGTCAGAAAGGGTGTCGAGAGTTCTGGTTCTCCGGAAAGTCCTCAACGGGCCGCAGCTGCAGGAGGATaGGGTTCGCCTGCTGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: AVRKGVESSGSPESPQRAAAAGG*GSPAAS Trigger: AGAGGCAGCAGGCGAACCGCATCCTCCTGCAGCTGC...GGCCCGTTGAGGACTTTCCGGAGAACCAGAACTCTCGACACCCTTTCTGACTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| CDS-3UTR GCA 90 bp | GGGCAGGATCACACAGGCTTCTGGGAAGATGTCTCTGCCTGTATCCCCAGCCCTTCGTCAGACCACGGCTaGAGGTTCTGCAGGGCGAAG | + |
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Preference number: 4 (lower is better) Translates to: GQDHTGFWEDVSACIPSPSSDHG*RFCRAK Trigger: CTTCGCCCTGCAGAACCTGCAGCCGTGGTCTGACGA...AGGGCTGGGGATACAGGCAGAGACATCTTCCCAGAAGCCTGTGTGATCCTGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| CDS-3UTR CCA 90 bp | TTCCAGAGTGAGGGCAGGATCACACAGGCTTCTGGGAAGATGTCTCTGCCTGTACTGATGGGCTCCGCGTaGCCCGGGTGGAGATGGTGC | + |
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Preference number: 4 (lower is better) Translates to: FQSEGRITQASGKMSLPVLMGSA*PGWRWC Trigger: GCACCATCTCCACCCGGGCCACGCGGAGCCCATCAG...TACAGGCAGAGACATCTTCCCAGAAGCCTGTGTGATCCTGCCCTCACTCTGGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR CCA 90 bp | AGAGTGAGGGCAGGATCACACAGGCTTCTGGGAAGATGTCTCTGCCTGTATCCCCCCATGCAGCCGCCCTaGTCGGGGCTGTTGAGGATC | + |
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Preference number: 4 (lower is better) Translates to: RVRAGSHRLLGRCLCLYPPMQPP*SGLLRI Trigger: GATCCTCAACAGCCCCGACCAGGGCGGCTGCATGGG...GGGATACAGGCAGAGACATCTTCCCAGAAGCCTGTGTGATCCTGCCCTCACTCT 60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR GCA 90 bp | TGTTCCAGAGTGAGGGCAGGATCACACAGGCTTCTGGGAAGATGTCTCTGCCTGATGCGGTTCGCCTGCTaGCTCTCGGCCTCACGTTCC | + |
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Preference number: 4 (lower is better) Translates to: CSRVRAGSHRLLGRCLCLMRFAC*LSASRS Trigger: GGAACGTGAGGCCGAGAGGCAGCAGGCGAACCGCAT...CAGGCAGAGACATCTTCCCAGAAGCCTGTGTGATCCTGCCCTCACTCTGGAACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| CDS-3UTR GCA 90 bp | TGTTCCAGAGTGAGGGCAGGATCACACAGGCTTCTGGGAAGATGTCTCTGCCTGAGGATGCGGTTCGCCTaGTGCCTCTCGGCCTCACGT | + |
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Preference number: 4 (lower is better) Translates to: CSRVRAGSHRLLGRCLCLRMRFA*CLSASR Trigger: ACGTGAGGCCGAGAGGCAGCAGGCGAACCGCATCCT...CAGGCAGAGACATCTTCCCAGAAGCCTGTGTGATCCTGCCCTCACTCTGGAACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| CDS-3UTR GCA 90 bp | AGAGTGAGGGCAGGATCACACAGGCTTCTGGGAAGATGTCTCTGCCTGTATCCCGCAGCTGCAGGAGGATaGGGTTCGCCTGCTGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: RVRAGSHRLLGRCLCLYPAAAGG*GSPAAS Trigger: AGAGGCAGCAGGCGAACCGCATCCTCCTGCAGCTGC...GGGATACAGGCAGAGACATCTTCCCAGAAGCCTGTGTGATCCTGCCCTCACTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| CDS-3UTR GCA 90 bp | TGCTGTTTGGGTGAGTCTGAGAGTCACCCCAGACTATGCCCTACAACAAGGGTCAGGATGCGGTTCGCCTaGTGCCTCTCGGCCTCACGT | + |
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Preference number: 4 (lower is better) Translates to: CCLGESESHPRLCPTTRVRMRFA*CLSASR Trigger: ACGTGAGGCCGAGAGGCAGCAGGCGAACCGCATCCT...GACCCTTGTTGTAGGGCATAGTCTGGGGTGACTCTCAGACTCACCCAAACAGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR GCA 90 bp | TCACCTCTGTGTGGACCTCCGGGCTCTCCTCCCAGGAGAGGAACAGAGAGGTTTTTCTGGAAGGCTTCCTaGTGCAGCTGCAGGAGGATG | + |
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Preference number: 4 (lower is better) Translates to: SPLCGPPGSPPRRGTERFFWKAS*CSCRRM Trigger: CATCCTCCTGCAGCTGCAGCAGGAAGCCTTCCAGAA...AAACCTCTCTGTTCCTCTCCTGGGAGGAGAGCCCGGAGGTCCACACAGAGGTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR CCA 90 bp | TGCGTGCAGTCAGAAAGGGTGTCGAGAGTTCTGGTTCTCCGGAAAGTCCTCAACGTTGTGCACGCACAGTaGGTCTGCAGGCAGCGGCTG | + |
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Preference number: 4 (lower is better) Translates to: CVQSERVSRVLVLRKVLNVVHAQ*VCRQRL Trigger: CAGCCGCTGCCTGCAGACCCACTGTGCGTGCACAAC...GTTGAGGACTTTCCGGAGAACCAGAACTCTCGACACCCTTTCTGACTGCACGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| CDS-3UTR GCA 90 bp | GAAAGGGTGTCGAGAGTTCTGGTTCTCCGGAAAGTCCTCAACGGGCCTTGGGTCAAGAGCGAGGAGTTGTaGACGCACAGTGGGTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: ERVSRVLVLRKVLNGPWVKSEEL*THSGSA Trigger: TGCAGACCCACTGTGCGTGCACAACTCCTCGCTCTT...GACCCAAGGCCCGTTGAGGACTTTCCGGAGAACCAGAACTCTCGACACCCTTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| CDS-3UTR GCA 90 bp | TGCTGTTTGGGTGAGTCTGAGAGTCACCCCAGACTATGCCCTACAACAAGGGTCTCGTCAGACCACGGCTaGAGGTTCTGCAGGGCGAAG | + |
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Preference number: 4 (lower is better) Translates to: CCLGESESHPRLCPTTRVSSDHG*RFCRAK Trigger: CTTCGCCCTGCAGAACCTGCAGCCGTGGTCTGACGA...GACCCTTGTTGTAGGGCATAGTCTGGGGTGACTCTCAGACTCACCCAAACAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR CCA 90 bp | TTCCAGAGTGAGGGCAGGATCACACAGGCTTCTGGGAAGATGTCTCTGCCTGTATGGGCCAGGCTCTTCTaGAAGGCTTCCTGCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: FQSEGRITQASGKMSLPVWARLF*KASCCS Trigger: GCTGCAGCAGGAAGCCTTCCAGAAGAGCCTGGCCCA...TACAGGCAGAGACATCTTCCCAGAAGCCTGTGTGATCCTGCCCTCACTCTGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| CDS-3UTR TCA 90 bp | GCAGTCAGAAAGGGTGTCGAGAGTTCTGGTTCTCCGGAAAGTCCTCAACGGGCCGATAGGGGTGACCTGTaGACCTGTCCTTTGTGTATC | + |
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Preference number: 4 (lower is better) Translates to: AVRKGVESSGSPESPQRADRGDL*TCPLCI Trigger: GATACACAAAGGACAGGTTCACAGGTCACCCCTATC...GGCCCGTTGAGGACTTTCCGGAGAACCAGAACTCTCGACACCCTTTCTGACTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR GCA 90 bp | GTTTCCAGCTTTAGTACAGATGGCTGCCTGGGGATCCCAGAAGCCTTCCGGACCTGTCCTTTGTGTATCTaGGGTTACTCTCCATCCAGG | + |
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Preference number: 4 (lower is better) Translates to: VSSFSTDGCLGIPEAFRTCPLCI*GYSPSR Trigger: CCTGGATGGAGAGTAACCGCAGATACACAAAGGACA...GGTCCGGAAGGCTTCTGGGATCCCCAGGCAGCCATCTGTACTAAAGCTGGAAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR GCA 90 bp | ATTCTGAACTGTTCCAGAGTGAGGGCAGGATCACACAGGCTTCTGGGAAGATGTTTCTGGAAGGCTTCCTaGTGCAGCTGCAGGAGGATG | + |
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Preference number: 4 (lower is better) Translates to: ILNCSRVRAGSHRLLGRCFWKAS*CSCRRM Trigger: CATCCTCCTGCAGCTGCAGCAGGAAGCCTTCCAGAA...ACATCTTCCCAGAAGCCTGTGTGATCCTGCCCTCACTCTGGAACAGTTCAGAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| CDS CCA 90 bp | GGGGCCGCCCGCCAAGGCCATGTTCACGTTGTAGGAGCCGGGCAGTaGGCCCATGCTGCAGGCACCGCCGCCGCCGCCCGCCGGACCACC | + |
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Preference number: 5 (lower is better) Translates to: GAARQGHVHVVGAGQ*AHAAGTAAAARRTT Trigger: GGTGGTCCGGCGGGCGGCGGCGGCGGTGCCTGCAGCATGGGCCCACTGCCCGGCTCCTACAACGTGAACATGGCCTTGGCGGGCGGCCCC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS GCA 90 bp | CCGCCAAGGCCATGTTCACGTTGTAGGAGCCGGGCAGTGGGCCCATaGTGCAGGCACCGCCGCCGCCGCCCGCCGGACCACCAGGACCAC | + |
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Preference number: 5 (lower is better) Translates to: PPRPCSRCRSRAVGP*CRHRRRRPPDHQDH Trigger: GTGGTCCTGGTGGTCCGGCGGGCGGCGGCGGCGGTGCCTGCAGCATGGGCCCACTGCCCGGCTCCTACAACGTGAACATGGCCTTGGCGG 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS GCA 90 bp | CCAAGGCCATGTTCACGTTGTAGGAGCCGGGCAGTGGGCCCATGCTaGAGGCACCGCCGCCGCCGCCCGCCGGACCACCAGGACCACCTG | + |
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Preference number: 5 (lower is better) Translates to: PRPCSRCRSRAVGPC*RHRRRRPPDHQDHL Trigger: CAGGTGGTCCTGGTGGTCCGGCGGGCGGCGGCGGCGGTGCCTGCAGCATGGGCCCACTGCCCGGCTCCTACAACGTGAACATGGCCTTGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR CAA 90 bp | GGAAGTGTCCGCAGGGGAGTGGAGGCGGTGCTTGGGAGCCTTGCTGAGAAGCCCGTCATTTTGAGCGCCTaGGCCAGAGCAGCGCGCTCC | + |
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Preference number: 5 (lower is better) Translates to: GSVRRGVEAVLGSLAEKPVILSA*ARAARS Trigger: GGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGAC...GGGCTTCTCAGCAAGGCTCCCAAGCACCGCCTCCACTCCCCTGCGGACACTTCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR CAA 90 bp | TGGGTGACACCAGGAGGGACAGTGGTATCACCTCTGTGTGGACCTCCGGGCTCTGTGAGGCCGGTGAGGTaGTTGACACCCGGCACCGCA | + |
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Preference number: 5 (lower is better) Translates to: WVTPGGTVVSPLCGPPGSVRPVR*LTPGTA Trigger: TGCGGTGCCGGGTGTCAACAACCTCACCGGCCTCAC...AGAGCCCGGAGGTCCACACAGAGGTGATACCACTGTCCCTCCTGGTGTCACCCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR CAA 90 bp | AGAGTGAGGGCAGGATCACACAGGCTTCTGGGAAGATGTCTCTGCCTGTATCCCTGCGCATCGGTCATTTaGAGCGCCTTGGCCAGAGCA | + |
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Preference number: 5 (lower is better) Translates to: RVRAGSHRLLGRCLCLYPCASVI*SALARA Trigger: TGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCA...GGGATACAGGCAGAGACATCTTCCCAGAAGCCTGTGTGATCCTGCCCTCACTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS-3UTR CAA 90 bp | TCAGAAAGGGTGTCGAGAGTTCTGGTTCTCCGGAAAGTCCTCAACGGGCCTTGGGTGACGCTGGTGATTTaGGTGGAGTCGTCAGACCAC | + |
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Preference number: 5 (lower is better) Translates to: SERVSRVLVLRKVLNGPWVTLVI*VESSDH Trigger: GTGGTCTGACGACTCCACCAAAATCACCAGCGTCAC...CCAAGGCCCGTTGAGGACTTTCCGGAGAACCAGAACTCTCGACACCCTTTCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| CDS GCA 72 bp | TGTTCACGTTGTAGGAGCCGGGCAGTGGGCCCATGCTaGAGGCACCGCCGCCGCCGCCCGCCGGACCACCAG | + |
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Preference number: 6 (lower is better) Translates to: CSRCRSRAVGPC*RHRRRRPPDHQ Trigger: CTGGTGGTCCGGCGGGCGGCGGCGGCGGTGCCTGCAGCATGGGCCCACTGCCCGGCTCCTACAACGTGAACA 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS GCA 72 bp | CCATGTTCACGTTGTAGGAGCCGGGCAGTGGGCCCATaGTGCAGGCACCGCCGCCGCCGCCCGCCGGACCAC | + |
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Preference number: 6 (lower is better) Translates to: PCSRCRSRAVGP*CRHRRRRPPDH Trigger: GTGGTCCGGCGGGCGGCGGCGGCGGTGCCTGCAGCATGGGCCCACTGCCCGGCTCCTACAACGTGAACATGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS CAA 72 bp | TCGCAGGCCGAAGCCACGGACGTGACGCTGGTGATTTaGGTGGAGTCGTCAGACCACGGCTGCAGGTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: SQAEATDVTLVI*VESSDHGCRFC Trigger: GCAGAACCTGCAGCCGTGGTCTGACGACTCCACCAAAATCACCAGCGTCACGTCCGTGGCTTCGGCCTGCGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026236.11 ENSMUST00000174617.3 |
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| CDS CAA 72 bp | CTCTCCATCCAGGGAAAGGTGAGGCCGGTGAGGTTGTaGACACCCGGCACCGCAGGCACAGAGGGTACTGTA | + |
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Preference number: 6 (lower is better) Translates to: LSIQGKVRPVRL*TPGTAGTEGTV Trigger: TACAGTACCCTCTGTGCCTGCGGTGCCGGGTGTCAACAACCTCACCGGCCTCACCTTTCCCTGGATGGAGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS CAA 72 bp | TTACTCTCCATCCAGGGAAAGGTGAGGCCGGTGAGGTaGTTGACACCCGGCACCGCAGGCACAGAGGGTACT | + |
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Preference number: 6 (lower is better) Translates to: LLSIQGKVRPVR*LTPGTAGTEGT Trigger: AGTACCCTCTGTGCCTGCGGTGCCGGGTGTCAACAACCTCACCGGCCTCACCTTTCCCTGGATGGAGAGTAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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| CDS CAA 90 bp | TATCTGCGGTTACTCTCCATCCAGGGAAAGGTGAGGCCGGTGAGGTaGTTGACACCCGGCACCGCAGGCACAGAGGGTACTGTAGGCAAG | + |
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Preference number: 6 (lower is better) Translates to: YLRLLSIQGKVRPVR*LTPGTAGTEGTVGK Trigger: CTTGCCTACAGTACCCTCTGTGCCTGCGGTGCCGGGTGTCAACAACCTCACCGGCCTCACCTTTCCCTGGATGGAGAGTAACCGCAGATA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026236.11 |
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