Pregenerated sensors for TLR8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040522Ensembl transcript IDs: ENSMUST00000049023.3, ENSMUST00000112170.2, ENSMUST00000133722.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TTGGGATTGTTGGGCCACTGGAGGATGGAGCTCTTACAGATCCTCTaGCGAAGCCTCAGGTACTGTGAGTACTGTAACACTGGTTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: LGLLGHWRMELLQIL*RSLRYCEYCNTGSR Trigger: CCTGGAACCAGTGTTACAGTACTCACAGTACCTGAGGCTTCGGCAGAGGATCTGTAAGAGCTCCATCCTCCAGTGGCCCAACAATCCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CCA 90 bp | AGACTTTGCCAAAACAAGTTTTCTGCTTTGGGATTGTTGGGCCACTaGAGGATGGAGCTCTTACAGATCCTCTGCCGAAGCCTCAGGTAC | + |
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Preference number: 5 (lower is better) Translates to: RLCQNKFSALGLLGH*RMELLQILCRSLRY Trigger: GTACCTGAGGCTTCGGCAGAGGATCTGTAAGAGCTCCATCCTCCAGTGGCCCAACAATCCCAAAGCAGAAAACTTGTTTTGGCAAAGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CCA 90 bp | TCTCGTCACAAGGATAGCTTCTGGAATAGTTCGCTTTATGGAAGATaGCACTGGTTCCAGAGGACAGCAGACAAAAGCACGTCAGAATCC | + |
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Preference number: 5 (lower is better) Translates to: SRHKDSFWNSSLYGR*HWFQRTADKSTSES Trigger: GGATTCTGACGTGCTTTTGTCTGCTGTCCTCTGGAACCAGTGCCATCTTCCATAAAGCGAACTATTCCAGAAGCTATCCTTGTGACGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 ENSMUST00000133722.2 |
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| CDS GCA 90 bp | GCCTATAGTTTGGGGAACTTCATGCAGTTGACGATGGTTGCATTCTaGAATCACAAGGGAGTTGTGCCTTATCTCGTCACAAGGATAGCT | + |
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Preference number: 5 (lower is better) Translates to: AYSLGNFMQLTMVAF*NHKGVVPYLVTRIA Trigger: AGCTATCCTTGTGACGAGATAAGGCACAACTCCCTTGTGATTGCAGAATGCAACCATCGTCAACTGCATGAAGTTCCCCAAACTATAGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 ENSMUST00000133722.2 |
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| CDS CCA 90 bp | CACAAGGATAGCTTCTGGAATAGTTCGCTTTATGGAAGATGGCACTaGTTCCAGAGGACAGCAGACAAAAGCACGTCAGAATCCATGACT | + |
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Preference number: 5 (lower is better) Translates to: HKDSFWNSSLYGRWH*FQRTADKSTSESMT Trigger: AGTCATGGATTCTGACGTGCTTTTGTCTGCTGTCCTCTGGAACCAGTGCCATCTTCCATAAAGCGAACTATTCCAGAAGCTATCCTTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 ENSMUST00000133722.2 |
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| CDS CCA 90 bp | CAATCACAAGGGAGTTGTGCCTTATCTCGTCACAAGGATAGCTTCTaGAATAGTTCGCTTTATGGAAGATGGCACTGGTTCCAGAGGACA | + |
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Preference number: 5 (lower is better) Translates to: QSQGSCALSRHKDSF*NSSLYGRWHWFQRT Trigger: TGTCCTCTGGAACCAGTGCCATCTTCCATAAAGCGAACTATTCCAGAAGCTATCCTTGTGACGAGATAAGGCACAACTCCCTTGTGATTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 ENSMUST00000133722.2 |
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| CDS GCA 90 bp | AAGCCAGAGGATGTATGTGGATGGATGAGTTTTCCTTGCAAGGTGTaGAAGGAAATGGAGCATTGTAACACCTTGGACAGTTTCCACTCA | + |
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Preference number: 5 (lower is better) Translates to: KPEDVCGWMSFPCKV*KEMEHCNTLDSFHS Trigger: TGAGTGGAAACTGTCCAAGGTGTTACAATGCTCCATTTCCTTGCACACCTTGCAAGGAAAACTCATCCATCCACATACATCCTCTGGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS TCA 90 bp | ATGTTTGTCACATACTTGCCTATAGTTTGGGGAACTTCATGCAGTTaGCGATGGTTGCATTCTGCAATCACAAGGGAGTTGTGCCTTATC | + |
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Preference number: 5 (lower is better) Translates to: MFVTYLPIVWGTSCS*RWLHSAITRELCLI Trigger: GATAAGGCACAACTCCCTTGTGATTGCAGAATGCAACCATCGTCAACTGCATGAAGTTCCCCAAACTATAGGCAAGTATGTGACAAACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 ENSMUST00000133722.2 |
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| CDS TCA 90 bp | AAGTTGGGTGAGACTTTGAAAAGCCAGAGGATGTATGTGGATGGATaGGTTTTCCTTGCAAGGTGTGCAAGGAAATGGAGCATTGTAACA | + |
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Preference number: 5 (lower is better) Translates to: KLGETLKSQRMYVDG*VFLARCARKWSIVT Trigger: TGTTACAATGCTCCATTTCCTTGCACACCTTGCAAGGAAAACTCATCCATCCACATACATCCTCTGGCTTTTCAAAGTCTCACCCAACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS GCA 90 bp | AGGCCTTGCCATAAGCAGTACACTGTGGCTTTATTAAAGGTTTGGTaGTATGGTAAAAATTCACGTGTGGATCAAACTCATCATCGTCTG | + |
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Preference number: 5 (lower is better) Translates to: RPCHKQYTVALLKVW*YGKNSRVDQTHHRL Trigger: CAGACGATGATGAGTTTGATCCACACGTGAATTTTTACCATAGCACCAAACCTTTAATAAAGCCACAGTGTACTGCTTATGGCAAGGCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CCA 90 bp | CCAAGGCCTTGCCATAAGCAGTACACTGTGGCTTTATTAAAGGTTTaGTGCTATGGTAAAAATTCACGTGTGGATCAAACTCATCATCGT | + |
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Preference number: 5 (lower is better) Translates to: PRPCHKQYTVALLKV*CYGKNSRVDQTHHR Trigger: ACGATGATGAGTTTGATCCACACGTGAATTTTTACCATAGCACCAAACCTTTAATAAAGCCACAGTGTACTGCTTATGGCAAGGCCTTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS TCA 90 bp | GTGCATTGTGGCTCAGGTCCAGCACTTCTAGATCGTGAAGATCACTaGAAGCATTGTTATCATCAAAGTCTAGTCTGTTGTTGGTTAAAT | + |
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Preference number: 5 (lower is better) Translates to: VHCGSGPALLDREDH*KHCYHQSLVCCWLN Trigger: ATTTAACCAACAACAGACTAGACTTTGATGATAACAATGCTTTCAGTGATCTTCACGATCTAGAAGTGCTGGACCTGAGCCACAATGCAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS TCA 90 bp | ATTTGCCATCATTTGCATTCCACAAACGGTCAAGACGATTTCCACTaGAAACCAATTCTTTCAGTGAGATGCTTTTCAGCTCACTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: ICHHLHSTNGQDDFH*KPILSVRCFSAHFP Trigger: AGGAAAGTGAGCTGAAAAGCATCTCACTGAAAGAATTGGTTTTCAGTGGAAATCGTCTTGACCGTTTGTGGAATGCAAATGATGGCAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CCA 90 bp | AATTTTCTCAATAAAGTTAATGCCCAAGTTGATGGTTGCCAAGTTTaGAAGACTCTGGAGATGCTCGAAATGCTTCTTTTTAAGTTCTCG | + |
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Preference number: 5 (lower is better) Translates to: NFLNKVNAQVDGCQV*KTLEMLEMLLFKFS Trigger: CGAGAACTTAAAAAGAAGCATTTCGAGCATCTCCAGAGTCTTCCAAACTTGGCAACCATCAACTTGGGCATTAACTTTATTGAGAAAATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS GCA 90 bp | TTCCCATGTAGCTCCAGAATAGACAAGTTCGTTTTCATCTTGGTTTaGAGGGAGGATTTATTGATCATCTTTATTGTGTTGAAACTTAGA | + |
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Preference number: 5 (lower is better) Translates to: FPCSSRIDKFVFILV*REDLLIIFIVLKLR Trigger: TCTAAGTTTCAACACAATAAAGATGATCAATAAATCCTCCCTGCAAACCAAGATGAAAACGAACTTGTCTATTCTGGAGCTACATGGGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS TCA 90 bp | GATACACAAGTCGTGAGATCTAGGCTCATGATACTCTTTGATTTTTaGTCCCCAGGATTGGAACATATAACATTTACCAATTTAGGAATT | + |
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Preference number: 5 (lower is better) Translates to: DTQVVRSRLMILFDF*SPGLEHITFTNLGI Trigger: AATTCCTAAATTGGTAAATGTTATATGTTCCAATCCTGGGGATCAAAAATCAAAGAGTATCATGAGCCTAGATCTCACGACTTGTGTATC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS GCA 90 bp | TTTGAAATCAATTTTCTCAATAAAGTTAATGCCCAAGTTGATGGTTaGCAAGTTTGGAAGACTCTGGAGATGCTCGAAATGCTTCTTTTT | + |
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Preference number: 5 (lower is better) Translates to: FEINFLNKVNAQVDG*QVWKTLEMLEMLLF Trigger: AAAAAGAAGCATTTCGAGCATCTCCAGAGTCTTCCAAACTTGGCAACCATCAACTTGGGCATTAACTTTATTGAGAAAATTGATTTCAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS GCA 72 bp | TTGGGCCACTGGAGGATGGAGCTCTTACAGATCCTCTaGCGAAGCCTCAGGTACTGTGAGTACTGTAACACT | + |
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Preference number: 6 (lower is better) Translates to: LGHWRMELLQIL*RSLRYCEYCNT Trigger: AGTGTTACAGTACTCACAGTACCTGAGGCTTCGGCAGAGGATCTGTAAGAGCTCCATCCTCCAGTGGCCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CCA 72 bp | CAAAACAAGTTTTCTGCTTTGGGATTGTTGGGCCACTaGAGGATGGAGCTCTTACAGATCCTCTGCCGAAGC | + |
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Preference number: 6 (lower is better) Translates to: QNKFSALGLLGH*RMELLQILCRS Trigger: GCTTCGGCAGAGGATCTGTAAGAGCTCCATCCTCCAGTGGCCCAACAATCCCAAAGCAGAAAACTTGTTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS GCA 72 bp | TTGGGGAACTTCATGCAGTTGACGATGGTTGCATTCTaGAATCACAAGGGAGTTGTGCCTTATCTCGTCACA | + |
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Preference number: 6 (lower is better) Translates to: LGNFMQLTMVAF*NHKGVVPYLVT Trigger: TGTGACGAGATAAGGCACAACTCCCTTGTGATTGCAGAATGCAACCATCGTCAACTGCATGAAGTTCCCCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 ENSMUST00000133722.2 |
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| CDS CCA 72 bp | GGGAGTTGTGCCTTATCTCGTCACAAGGATAGCTTCTaGAATAGTTCGCTTTATGGAAGATGGCACTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: GSCALSRHKDSF*NSSLYGRWHWF Trigger: GAACCAGTGCCATCTTCCATAAAGCGAACTATTCCAGAAGCTATCCTTGTGACGAGATAAGGCACAACTCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 ENSMUST00000133722.2 |
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| CDS CAA 72 bp | AGACTTTGCCAAAACAAGTTTTCTGCTTTGGGATTGTaGGGCCACTGGAGGATGGAGCTCTTACAGATCCTC | + |
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Preference number: 6 (lower is better) Translates to: RLCQNKFSALGL*GHWRMELLQIL Trigger: GAGGATCTGTAAGAGCTCCATCCTCCAGTGGCCCAACAATCCCAAAGCAGAAAACTTGTTTTGGCAAAGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS TCA 72 bp | GAGACTTTGAAAAGCCAGAGGATGTATGTGGATGGATaGGTTTTCCTTGCAAGGTGTGCAAGGAAATGGAGC | + |
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Preference number: 6 (lower is better) Translates to: ETLKSQRMYVDG*VFLARCARKWS Trigger: GCTCCATTTCCTTGCACACCTTGCAAGGAAAACTCATCCATCCACATACATCCTCTGGCTTTTCAAAGTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS TCA 72 bp | GGGAAGTGCTGGAAAGGTTTAGATAGAGAAGTTGGGTaGGACTTTGAAAAGCCAGAGGATGTATGTGGATGG | + |
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Preference number: 6 (lower is better) Translates to: GKCWKGLDREVG*DFEKPEDVCGW Trigger: CCATCCACATACATCCTCTGGCTTTTCAAAGTCTCACCCAACTTCTCTATCTAAACCTTTCCAGCACTTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS GCA 72 bp | TTGATCATCTTTATTGTGTTGAAACTTAGATCCAGGTaGACCAGATTCCTGGCTTCGGAGAGGAAGCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: LIIFIVLKLRSR*TRFLASERKPE Trigger: CTCTGGCTTCCTCTCCGAAGCCAGGAATCTGGTGCACCTGGATCTAAGTTTCAACACAATAAAGATGATCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CAA 72 bp | TTCAGACTTTGCCAAAACAAGTTTTCTGCTTTGGGATaGTTGGGCCACTGGAGGATGGAGCTCTTACAGATC | + |
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Preference number: 6 (lower is better) Translates to: FRLCQNKFSALG*LGHWRMELLQI Trigger: GATCTGTAAGAGCTCCATCCTCCAGTGGCCCAACAATCCCAAAGCAGAAAACTTGTTTTGGCAAAGTCTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS TCA 72 bp | ACATACTTGCCTATAGTTTGGGGAACTTCATGCAGTTaGCGATGGTTGCATTCTGCAATCACAAGGGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: TYLPIVWGTSCS*RWLHSAITREL Trigger: CAACTCCCTTGTGATTGCAGAATGCAACCATCGTCAACTGCATGAAGTTCCCCAAACTATAGGCAAGTATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 ENSMUST00000133722.2 |
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| CDS CCA 72 bp | ATGCCCAAGTTGATGGTTGCCAAGTTTGGAAGACTCTaGAGATGCTCGAAATGCTTCTTTTTAAGTTCTCGG | + |
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Preference number: 6 (lower is better) Translates to: MPKLMVAKFGRL*RCSKCFFLSSR Trigger: CCGAGAACTTAAAAAGAAGCATTTCGAGCATCTCCAGAGTCTTCCAAACTTGGCAACCATCAACTTGGGCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CAA 72 bp | CACATACTTGCCTATAGTTTGGGGAACTTCATGCAGTaGACGATGGTTGCATTCTGCAATCACAAGGGAGTT | + |
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Preference number: 6 (lower is better) Translates to: HILAYSLGNFMQ*TMVAFCNHKGV Trigger: AACTCCCTTGTGATTGCAGAATGCAACCATCGTCAACTGCATGAAGTTCCCCAAACTATAGGCAAGTATGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 ENSMUST00000133722.2 |
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| CDS CAA 72 bp | AAAAATTCACGTGTGGATCAAACTCATCATCGTCTGTaGAGAGAGGTTTCCGAAGACGATTTCGCCAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: KNSRVDQTHHRL*REVSEDDFAKR Trigger: CCTCTTGGCGAAATCGTCTTCGGAAACCTCTCTCAACAGACGATGATGAGTTTGATCCACACGTGAATTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS TCA 72 bp | GGCTCAGGTCCAGCACTTCTAGATCGTGAAGATCACTaGAAGCATTGTTATCATCAAAGTCTAGTCTGTTGT | + |
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Preference number: 6 (lower is better) Translates to: GSGPALLDREDH*KHCYHQSLVCC Trigger: ACAACAGACTAGACTTTGATGATAACAATGCTTTCAGTGATCTTCACGATCTAGAAGTGCTGGACCTGAGCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS TCA 72 bp | TGTGCATTGTGGCTCAGGTCCAGCACTTCTAGATCGTaGAGATCACTGAAAGCATTGTTATCATCAAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: CALWLRSSTSRS*RSLKALLSSKS Trigger: AGACTTTGATGATAACAATGCTTTCAGTGATCTTCACGATCTAGAAGTGCTGGACCTGAGCCACAATGCACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CAA 90 bp | TATGTTTGTCACATACTTGCCTATAGTTTGGGGAACTTCATGCAGTaGACGATGGTTGCATTCTGCAATCACAAGGGAGTTGTGCCTTAT | + |
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Preference number: 6 (lower is better) Translates to: YVCHILAYSLGNFMQ*TMVAFCNHKGVVPY Trigger: ATAAGGCACAACTCCCTTGTGATTGCAGAATGCAACCATCGTCAACTGCATGAAGTTCCCCAAACTATAGGCAAGTATGTGACAAACATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 ENSMUST00000133722.2 |
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| CDS GCA 72 bp | AAGTTGATGGTTGCCAAGTTTGGAAGACTCTGGAGATaGTCGAAATGCTTCTTTTTAAGTTCTCGGAACACA | + |
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Preference number: 6 (lower is better) Translates to: KLMVAKFGRLWR*SKCFFLSSRNT Trigger: TGTGTTCCGAGAACTTAAAAAGAAGCATTTCGAGCATCTCCAGAGTCTTCCAAACTTGGCAACCATCAACTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CAA 72 bp | GACTCAGGCAACCCAGCAGGTATAGTATATAACTGGTaGTCTTCCAGCAGTAAAACTGTTAGATTTCTTAGG | + |
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Preference number: 6 (lower is better) Translates to: DSGNPAGIVYNW*SSSSKTVRFLR Trigger: CCTAAGAAATCTAACAGTTTTACTGCTGGAAGACAACCAGTTATATACTATACCTGCTGGGTTGCCTGAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CAA 72 bp | GTTTGCAGGGAGGATTTATTGATCATCTTTATTGTGTaGAAACTTAGATCCAGGTGCACCAGATTCCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: VCREDLLIIFIV*KLRSRCTRFLA Trigger: AGCCAGGAATCTGGTGCACCTGGATCTAAGTTTCAACACAATAAAGATGATCAATAAATCCTCCCTGCAAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS TCA 72 bp | CATTTGCATTCCACAAACGGTCAAGACGATTTCCACTaGAAACCAATTCTTTCAGTGAGATGCTTTTCAGCT | + |
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Preference number: 6 (lower is better) Translates to: HLHSTNGQDDFH*KPILSVRCFSA Trigger: AGCTGAAAAGCATCTCACTGAAAGAATTGGTTTTCAGTGGAAATCGTCTTGACCGTTTGTGGAATGCAAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CAA 72 bp | AGTGTCTCCAGGGAATGTGCAAACTTAGATAGGCAATaGGGTAGAAAATACAGCTCATTTCTCGATAAATCC | + |
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Preference number: 6 (lower is better) Translates to: SVSRECANLDRQ*GRKYSSFLDKS Trigger: GGATTTATCGAGAAATGAGCTGTATTTTCTACCCAATTGCCTATCTAAGTTTGCACATTCCCTGGAGACACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CAA 90 bp | GTGCTGTTGTTTGGCATTGTGGTTCAGATCGATTTTAGTGAGGTTTaGCAGCTTTTGAAAGGACTCTTTCGTTATATGTGTAATGGCATT | + |
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Preference number: 6 (lower is better) Translates to: VLLFGIVVQIDFSEV*QLLKGLFRYMCNGI Trigger: AATGCCATTACACATATAACGAAAGAGTCCTTTCAAAAGCTGCAAAACCTCACTAAAATCGATCTGAACCACAATGCCAAACAACAGCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 ENSMUST00000133722.2 |
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| CDS CAA 90 bp | TGGAAAGCTTTGAAATCAATTTTCTCAATAAAGTTAATGCCCAAGTaGATGGTTGCCAAGTTTGGAAGACTCTGGAGATGCTCGAAATGC | + |
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Preference number: 6 (lower is better) Translates to: WKALKSIFSIKLMPK*MVAKFGRLWRCSKC Trigger: GCATTTCGAGCATCTCCAGAGTCTTCCAAACTTGGCAACCATCAACTTGGGCATTAACTTTATTGAGAAAATTGATTTCAAAGCTTTCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS GCA 72 bp | AATTTTCTCAATAAAGTTAATGCCCAAGTTGATGGTTaGCAAGTTTGGAAGACTCTGGAGATGCTCGAAATG | + |
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Preference number: 6 (lower is better) Translates to: NFLNKVNAQVDG*QVWKTLEMLEM Trigger: CATTTCGAGCATCTCCAGAGTCTTCCAAACTTGGCAACCATCAACTTGGGCATTAACTTTATTGAGAAAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS GCA 72 bp | GAGACTTTTAAAAATGGACCAGTATTTGCCATCATTTaGATTCCACAAACGGTCAAGACGATTTCCACTGAA | + |
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Preference number: 6 (lower is better) Translates to: ETFKNGPVFAII*IPQTVKTISTE Trigger: TTCAGTGGAAATCGTCTTGACCGTTTGTGGAATGCAAATGATGGCAAATACTGGTCCATTTTTAAAAGTCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS GCA 72 bp | AAAACAAAGATTGTTTTCTTGCTCTGGTTTATGCTCTaGATGAGGTTATCAATGATGGGTAATCCTGGATCC | + |
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Preference number: 6 (lower is better) Translates to: KTKIVFLLWFML*MRLSMMGNPGS Trigger: GGATCCAGGATTACCCATCATTGATAACCTCATGCAGAGCATAAACCAGAGCAAGAAAACAATCTTTGTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CCA 72 bp | AATAAAGTTAATGCCCAAGTTGATGGTTGCCAAGTTTaGAAGACTCTGGAGATGCTCGAAATGCTTCTTTTT | + |
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Preference number: 6 (lower is better) Translates to: NKVNAQVDGCQV*KTLEMLEMLLF Trigger: AAAAAGAAGCATTTCGAGCATCTCCAGAGTCTTCCAAACTTGGCAACCATCAACTTGGGCATTAACTTTATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CCA 72 bp | TGCCATAAGCAGTACACTGTGGCTTTATTAAAGGTTTaGTGCTATGGTAAAAATTCACGTGTGGATCAAACT | + |
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Preference number: 6 (lower is better) Translates to: CHKQYTVALLKV*CYGKNSRVDQT Trigger: AGTTTGATCCACACGTGAATTTTTACCATAGCACCAAACCTTTAATAAAGCCACAGTGTACTGCTTATGGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CAA 90 bp | AGAATAGACAAGTTCGTTTTCATCTTGGTTTGCAGGGAGGATTTATaGATCATCTTTATTGTGTTGAAACTTAGATCCAGGTGCACCAGA | + |
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Preference number: 6 (lower is better) Translates to: RIDKFVFILVCREDL*IIFIVLKLRSRCTR Trigger: TCTGGTGCACCTGGATCTAAGTTTCAACACAATAAAGATGATCAATAAATCCTCCCTGCAAACCAAGATGAAAACGAACTTGTCTATTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS TCA 72 bp | TTGGCATTGAAGGACAGATTTAAGCAGGCGATATCCTaGAAACCTTCAAATTGGCTTTTCCCAATAATGAAA | + |
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Preference number: 6 (lower is better) Translates to: LALKDRFKQAIS*KPSNWLFPIMK Trigger: TTTCATTATTGGGAAAAGCCAATTTGAAGGTTTTCAGGATATCGCCTGCTTAAATCTGTCCTTCAATGCCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS TCA 72 bp | GTCGTGAGATCTAGGCTCATGATACTCTTTGATTTTTaGTCCCCAGGATTGGAACATATAACATTTACCAAT | + |
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Preference number: 6 (lower is better) Translates to: VVRSRLMILFDF*SPGLEHITFTN Trigger: ATTGGTAAATGTTATATGTTCCAATCCTGGGGATCAAAAATCAAAGAGTATCATGAGCCTAGATCTCACGAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS GCA 72 bp | CATAAGCAGTACACTGTGGCTTTATTAAAGGTTTGGTaGTATGGTAAAAATTCACGTGTGGATCAAACTCAT | + |
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Preference number: 6 (lower is better) Translates to: HKQYTVALLKVW*YGKNSRVDQTH Trigger: ATGAGTTTGATCCACACGTGAATTTTTACCATAGCACCAAACCTTTAATAAAGCCACAGTGTACTGCTTATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CAA 72 bp | TTGAAATCAATTTTCTCAATAAAGTTAATGCCCAAGTaGATGGTTGCCAAGTTTGGAAGACTCTGGAGATGC | + |
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Preference number: 6 (lower is better) Translates to: LKSIFSIKLMPK*MVAKFGRLWRC Trigger: GCATCTCCAGAGTCTTCCAAACTTGGCAACCATCAACTTGGGCATTAACTTTATTGAGAAAATTGATTTCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CAA 90 bp | TTCCAGCTCTTGGCATATTTCTTGGTTAAAACAAAGATTGTTTTCTaGCTCTGGTTTATGCTCTGCATGAGGTTATCAATGATGGGTAAT | + |
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Preference number: 6 (lower is better) Translates to: FQLLAYFLVKTKIVF*LWFMLCMRLSMMGN Trigger: ATTACCCATCATTGATAACCTCATGCAGAGCATAAACCAGAGCAAGAAAACAATCTTTGTTTTAACCAAGAAATATGCCAAGAGCTGGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS TCA 72 bp | AAAGGACTCTTTCGTTATATGTGTAATGGCATTGTCTaGCAAGTCTATGTTTGTCACATACTTGCCTATAGT | + |
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Preference number: 6 (lower is better) Translates to: KGLFRYMCNGIV*QVYVCHILAYS Trigger: ACTATAGGCAAGTATGTGACAAACATAGACTTGTCAGACAATGCCATTACACATATAACGAAAGAGTCCTTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 ENSMUST00000133722.2 |
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| CDS CAA 72 bp | AAGTTCGTTTTCATCTTGGTTTGCAGGGAGGATTTATaGATCATCTTTATTGTGTTGAAACTTAGATCCAGG | + |
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Preference number: 6 (lower is better) Translates to: KFVFILVCREDL*IIFIVLKLRSR Trigger: CCTGGATCTAAGTTTCAACACAATAAAGATGATCAATAAATCCTCCCTGCAAACCAAGATGAAAACGAACTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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| CDS CAA 72 bp | TTGGCATATTTCTTGGTTAAAACAAAGATTGTTTTCTaGCTCTGGTTTATGCTCTGCATGAGGTTATCAATG | + |
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Preference number: 6 (lower is better) Translates to: LAYFLVKTKIVF*LWFMLCMRLSM Trigger: CATTGATAACCTCATGCAGAGCATAAACCAGAGCAAGAAAACAATCTTTGTTTTAACCAAGAAATATGCCAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049023.3 ENSMUST00000112170.2 |
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